RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7645
(418 letters)
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 718 bits (1857), Expect = 0.0
Identities = 259/339 (76%), Positives = 305/339 (89%)
Query: 3 LFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 62
+FEV+STAGDTHLGGEDFDNR+V+H EFKRK+KKD+S N RA+RRLRTA ERAKRTLS
Sbjct: 216 IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLS 275
Query: 63 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVV 122
SST+ASIEID+LY+GIDFYT I+RARFEEL +DLFR TL PVEKAL+DAKLDKS IHD+V
Sbjct: 276 SSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIV 335
Query: 123 LVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVD 182
LVGGSTRIPK+Q LLQ+FF GK LN SINPDEAVAYGAAVQAAILSGD+S +QD+LL+D
Sbjct: 336 LVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLD 395
Query: 183 VTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNL 242
VTPLSLGIETAGGVMT LI+RNT IP KQTQTFTTY+DNQP V IQV+EGERAMTKDNNL
Sbjct: 396 VTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNL 455
Query: 243 LGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEI 302
LG F+LTGIPPAPRGVP+I+VTFD+DANGILNV+A D S+GK ITI NDKGRLSKE+I
Sbjct: 456 LGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDI 515
Query: 303 DRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALD 341
+RM+ +AE+YK EDE+Q++++S++N+LE+Y FN+K ++
Sbjct: 516 ERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVE 554
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 662 bits (1711), Expect = 0.0
Identities = 108/425 (25%), Positives = 190/425 (44%), Gaps = 24/425 (5%)
Query: 4 FEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS 63
+V TA D H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS+
Sbjct: 221 LKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSA 280
Query: 64 STEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVL 123
+T A ++++ + +D +++SR EEL L +PV KAL AKL + V +
Sbjct: 281 NTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEI 340
Query: 124 VGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDV 183
+GG+TRIP ++ + F GK L+ ++N DEA+A GAA AI S ++ D+
Sbjct: 341 IGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICAIHSPTL--RVRPFKFEDI 397
Query: 184 TPLSLGIETAGGV----MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKD 239
P S+ V ++ + P + T D A + T +
Sbjct: 398 HPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPE 457
Query: 240 NNLLGTFDLTGI--PPAPRGVPKIDVTFDLDANGILNV----------TAKDTSSGKSQN 287
+ +++TG+ P VP + + D +G+ + DT + K +
Sbjct: 458 Q--IANWEITGVQLPEGQDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDD 514
Query: 288 ITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL-DNAGNK 346
+TI L ++++ +I +D+ E +N LE Y++ ++ L +
Sbjct: 515 LTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPF 574
Query: 347 LTESEKSRCREECDATLKWL-DNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAG 405
+++EK++ + + +WL D + K +Y K ++L + +
Sbjct: 575 ASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKKQA 634
Query: 406 DMPRG 410
+
Sbjct: 635 IRSKQ 639
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 512 bits (1321), Expect = e-179
Identities = 187/397 (47%), Positives = 254/397 (63%), Gaps = 13/397 (3%)
Query: 4 FEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS 63
FEV +T GDTHLGGEDFD+RL+++L EEFK+ D+ +P A++RL+ AAE+AK LSS
Sbjct: 216 FEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSS 275
Query: 64 STEASIE---IDALYDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIH 119
+ + + I A G K++RA+ E L DL +++P++ ALQDA L S I
Sbjct: 276 AQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDID 335
Query: 120 DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVL 179
DV+LVGG TR+P VQ + FF GK +NPDEAVA GAAVQ +L+GD ++DVL
Sbjct: 336 DVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVL 390
Query: 180 LVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKD 239
L+DVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ AVTI V +GER D
Sbjct: 391 LLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD 450
Query: 240 NNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSK 299
N LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L++
Sbjct: 451 NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNE 509
Query: 300 EEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREEC 359
+EI +M+ DAE + D + E + RN + + + ++ ++ AG+KL +K+
Sbjct: 510 DEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESAL 569
Query: 360 DATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 396
A L DK + K+Q+L + LM
Sbjct: 570 TALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQ 603
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 482 bits (1244), Expect = e-169
Identities = 172/331 (51%), Positives = 229/331 (69%), Gaps = 10/331 (3%)
Query: 4 FEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS 63
FEV++TAGD HLGG+DFD ++ +L +FK+++ D+S + AL+RL+ AAE+AK+ LS
Sbjct: 185 FEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSG 244
Query: 64 STEASIE---IDALYDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIH 119
T+ I I A +G + ++RA+FEEL + L T+ PV +ALQDA L + I
Sbjct: 245 VTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADID 304
Query: 120 DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVL 179
V+LVGGSTRIP VQ ++ GK + +NPDE VA GAA+Q +++G+ ++DV+
Sbjct: 305 KVILVGGSTRIPAVQEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVV 359
Query: 180 LVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKD 239
L+DVTPLSLGIET GGV TKLIERNT IP ++Q FTT ADNQ V I V +GER M D
Sbjct: 360 LLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAAD 419
Query: 240 NNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSK 299
N LG F LTGIPPAPRGVP+I+VTFD+DANGI++V AKD + K Q+ITIK+ G LS+
Sbjct: 420 NKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG-LSE 478
Query: 300 EEIDRMINDAERYKDEDERQKERISARNNLE 330
EEI RMI +AE + D ++KE RN +
Sbjct: 479 EEIQRMIKEAEENAEADRKRKEAAELRNEAD 509
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 368 bits (948), Expect = e-126
Identities = 135/168 (80%), Positives = 153/168 (91%)
Query: 3 LFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 62
+FEV+STAGDTHLGGEDFDNR+VSHLAEEFKRK+KKD+ N RA+RRLRTA ERAKRTLS
Sbjct: 237 IFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLS 296
Query: 63 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVV 122
SST+ASIEID+LY+G+DFYT I+RARFEEL +DLFR TL+PVEKAL+DAKLDK I ++V
Sbjct: 297 SSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIV 356
Query: 123 LVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 170
LVGGSTRIPK+Q LLQ+FF GK LN SINPDEAVAYGAAVQAAIL GD
Sbjct: 357 LVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 364 bits (936), Expect = e-124
Identities = 98/166 (59%), Positives = 127/166 (76%)
Query: 3 LFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 62
+FEV++T+GDTHLGGEDFD ++V L + FK+K+ D+S N +AL +L+ AE+AKR LS
Sbjct: 229 VFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALS 288
Query: 63 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVV 122
S IEID+ DGID ++RA+FEEL DLF+ TL+PVEK LQD+ L+K + D+V
Sbjct: 289 SQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIV 348
Query: 123 LVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 168
LVGGSTRIPKVQ LL+++F GK + INPDEAVAYGAAVQA +LS
Sbjct: 349 LVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGVLS 394
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 330 bits (849), Expect = e-114
Identities = 104/149 (69%), Positives = 133/149 (89%)
Query: 182 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 241
DV PLSLGIETAGGVMT LI+RNTRIP K +TFTTYADNQP V+IQV+EGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 242 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 301
LGTF+L+GIPPAPRGVP+I+VTF++DANGILNV+A+D S+GKS ITI+N+KGRL++ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 302 IDRMINDAERYKDEDERQKERISARNNLE 330
IDRM+++A++++ ED Q+ER+ ARN LE
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 330 bits (848), Expect = e-114
Identities = 98/149 (65%), Positives = 122/149 (81%)
Query: 182 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 241
DV L+LGIET GGVMT LI+RNT IP K++Q F+T DNQP V I+V+EGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 242 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 301
LLG F+LTGIPPAPRGVP+I+VTF LDANGIL V+A D +GKS++ITI NDKGRL++EE
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 302 IDRMINDAERYKDEDERQKERISARNNLE 330
IDRM+ +AE++ ED K ++ +RN LE
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 326 bits (839), Expect = e-113
Identities = 90/149 (60%), Positives = 119/149 (79%)
Query: 182 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 241
DV PL+LGIET GGVMTKLI RNT IP K++Q F+T AD+Q AV+I ++EGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 242 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 301
LG FD+TGIPPAPRGVP+I+VTF++D NGIL+V+A+D +G +TI ND RLS E+
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 302 IDRMINDAERYKDEDERQKERISARNNLE 330
I+RMINDA+++ +D+ QKE++ +RN LE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 297 bits (764), Expect = e-100
Identities = 102/223 (45%), Positives = 139/223 (62%), Gaps = 4/223 (1%)
Query: 178 VLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 237
VLL+DVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ AVTI V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 238 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRL 297
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-L 119
Query: 298 SKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCRE 357
+++EI +M+ DAE + D + +E + RN + + + ++ ++ AG+KL +K+
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIES 179
Query: 358 ECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAG 400
A L DK + K+Q+L + LM
Sbjct: 180 ALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQQHA 219
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 284 bits (730), Expect = 3e-96
Identities = 91/179 (50%), Positives = 122/179 (68%), Gaps = 5/179 (2%)
Query: 163 QAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQ 222
L + +DVTPLSLGIET GGV TKLI RNT IP K++Q F+T AD Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 223 PAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSS 282
V I+V +GER M DN LLG F L GIPPAPRGVP+I+VTFD+DANGI++V+AKD +
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 283 GKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALD 341
G+ Q I I++ G LSK++I+ M+ +AE+Y +ED R+KER+ A N E + + + ++
Sbjct: 125 GREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 277 bits (710), Expect = 2e-92
Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 5/225 (2%)
Query: 182 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 241
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 242 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 301
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G L+ E
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDSE 120
Query: 302 IDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDA 361
I MI D+ Y ++D + + + + ++ AL L+ +E+ +
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 362 TLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSK-MHGGAGGASAG 405
+ + D + + ++ + K ++ M A G
Sbjct: 181 LSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKG 222
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 256 bits (655), Expect = 2e-85
Identities = 87/149 (58%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 182 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 241
DVTPLSLGIET GG+MTKLI RNT IP K++Q F+T AD Q V I+VF+GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 242 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 301
LLG F L GIPPAPRGVP+++VTFD+DANGI+NV+A+D +GK Q I I++ G LSK++
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
Query: 302 IDRMINDAERYKDEDERQKERISARNNLE 330
I+ MI +AE+ ED ++KE + N E
Sbjct: 123 IENMIKEAEKNAAEDAKRKELVEVINQAE 151
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 227 bits (581), Expect = 2e-74
Identities = 75/132 (56%), Positives = 92/132 (69%)
Query: 164 AAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQP 223
++ + +VDVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 224 AVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSG 283
AVTI V +GER DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SG
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 122
Query: 284 KSQNITIKNDKG 295
K Q ITIK G
Sbjct: 123 KEQKITIKASSG 134
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 219 bits (561), Expect = 5e-68
Identities = 81/171 (47%), Positives = 112/171 (65%), Gaps = 9/171 (5%)
Query: 4 FEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS 63
FEV +T GDTHLGGEDFD+RL+++L EEFK+ D+ +P A++RL+ AAE+AK LSS
Sbjct: 216 FEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSS 275
Query: 64 STEASIE---IDALYDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA 117
+ + + I A G ++ K++RA+ E L DL +++ ++ ALQDA L S
Sbjct: 276 AQQTDVNLPYITADATGPKHMN--IKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSD 333
Query: 118 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 168
I DV+LVGG TR+P VQ + FF GK +NPDEAVA GAAVQ +L+
Sbjct: 334 IDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 383
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 131 bits (330), Expect = 2e-37
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 8/118 (6%)
Query: 309 AERYKDEDERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWL 366
+ + + LE+Y FN+KQ + + +K++ +K + ++CD LKWL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 367 DNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRG------GPTVEEVD 418
D+N A+KEE++ + + L+ P++SK++ AGGA G P G GPT+EEVD
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGAAPGGAAGGAGGPTIEEVD 120
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 113 bits (283), Expect = 9e-31
Identities = 43/110 (39%), Positives = 71/110 (64%), Gaps = 10/110 (9%)
Query: 319 QKERISARNNLEAYVFNVKQALDNAGN--KLTESEKSRCREECDATLKWLDNNTLADKEE 376
ER+SA+N LE+Y FN+K A+++ G K++E++K + ++C + WLD NTLA+K+E
Sbjct: 4 AAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDE 63
Query: 377 YQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRG--------GPTVEEVD 418
++ K ++L++ C P++S ++ GAGG G GPT+EEVD
Sbjct: 64 FEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPKGGSGSGPTIEEVD 113
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 103 bits (257), Expect = 6e-27
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 15/112 (13%)
Query: 322 RISARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQD 379
+ LE+Y FN+K +++ K+ + +K + ++C+ + WLD N A+KEE++
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 380 KLQQLQKSCMPLMSKMHGGAGGASAGDMPRG-------------GPTVEEVD 418
+ ++L+K C P+++K++ AGG G GPT+EEVD
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.5 bits (169), Expect = 8e-13
Identities = 60/479 (12%), Positives = 139/479 (29%), Gaps = 171/479 (35%)
Query: 12 DTHLGGEDFDNR-LVSHLAEEFKRKYKKDMSVN--PRALRRLRTAAE------------R 56
D G + + ++S + F + + + + E
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFV----DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 57 AKR---TLSSSTEASIE-----------------------------------IDALYDGI 78
R TL S E ++ D LY+
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 79 DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVG--GSTRIPKVQSL 136
+ K + +R + L+ +AL + + K +V++ G G
Sbjct: 124 QVFAKYNVSRLQPY------LKLR---QALLELRPAK----NVLIDGVLG---------- 160
Query: 137 LQNFFCGKS-LNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLG-IETAG 194
GK+ + A+ S +Q + + L+L +
Sbjct: 161 -----SGKTWV--------------ALDVC-----LSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 195 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 254
V+ L + +I +T+ +D+ + +++ + LL + P
Sbjct: 197 TVLEMLQKLLYQI----DPNWTSRSDHSSNIKLRI---HSIQAELRRLLKS------KPY 243
Query: 255 PRG------V--PKIDVTFDLDANGILNVTAKDTS------SGKSQNITIKNDKGRLSKE 300
V K F+L IL +T + + + +I++ + L+ +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCK-IL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 301 EIDRMINDAERYKDED-----------------ERQKERISARNNLEAYVFN-VKQALDN 342
E+ ++ + +D E ++ ++ +N + + + +++
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 343 AGNKLTESEKSRCREEC-----DA-----TLK--WLDNNTLADKEEYQDKLQQLQKSCM 389
+ N L +E + + A L W D K + + +L K +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD----VIKSDVMVVVNKLHKYSL 416
Score = 47.2 bits (111), Expect = 9e-06
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 39/155 (25%)
Query: 266 DLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK---ER 322
+ D + ++ K LSKEEID +I KD
Sbjct: 32 NFDCKDVQDMP-----------------KSILSKEEIDHIIMS----KDAVSGTLRLFWT 70
Query: 323 ISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLD--NNTLADKEEY--- 377
+ ++ F V++ L L K+ R+ T +++ + D + +
Sbjct: 71 LLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 378 ----QDKLQQLQKSCMPLMSK----MHGGAG-GAS 403
+L+++ + L + G G G +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Score = 44.8 bits (105), Expect = 5e-05
Identities = 68/528 (12%), Positives = 136/528 (25%), Gaps = 185/528 (35%)
Query: 5 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVN-PRALRRLRTAAERA------ 57
E R + T + + +RL + + + K +V+ + +LR A
Sbjct: 101 EQRQPSMMTRMY-IEQRDRLYND-----NQVFAK-YNVSRLQPYLKLRQALLELRPAKNV 153
Query: 58 ---------KRTLSSSTEASIEI-DALYDGIDFYTKISRARFEE--------LC------ 93
K ++ S ++ + I F+ + E L
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 94 ----------------------SDLFRSTLQPVEKAL------QDAKL------------ 113
L +S +P E L Q+AK
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKS--KPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 114 ---DKSAIHDVVLVGGSTRIPKVQSLLQNF-------FCGKSLNLSIN--PDEAVA---- 157
K + D + +T I + K L+ P E +
Sbjct: 271 TTRFKQ-VTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 158 ----YGAAVQAAI--------LSGDQSSAIQDVLLVDVTP-------LSLGIETAGGVMT 198
+++ + ++ D+ + I + L + P L +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-------- 380
Query: 199 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGE---RAMTKDNNLLGTFDLTGIPPAP 255
+ IP T + + + V + ++ + T IP
Sbjct: 381 --FPPSAHIP---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI---SIP--- 429
Query: 256 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMI--------N 307
+ +L + N A S NI D L +D+
Sbjct: 430 ------SIYLELKVK-LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 308 DAERYKDEDE-----------RQKERISARN-NLEAYVFNVKQALDNAGNKLTESEKSRC 355
+ E + QK R + N + N Q L + +++
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 356 REECDATLKWLDNN---------------TLADKEE--YQDKLQQLQK 386
R L +L L ++E +++ +Q+Q+
Sbjct: 543 RLVNA-ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 43.3 bits (101), Expect = 1e-04
Identities = 39/228 (17%), Positives = 66/228 (28%), Gaps = 78/228 (34%)
Query: 217 TYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVT 276
Y D + VFE A + FD + P+ + + + I+
Sbjct: 17 QYKD-----ILSVFE--DAFVDN------FDCKDVQDMPKSILS-----KEEIDHIIM-- 56
Query: 277 AKDTSSGKSQNITIKNDKGRLSKEEIDRMIND---------AERYKDEDERQKER----- 322
+KD SG + K +E + + + + K E RQ
Sbjct: 57 SKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMY 112
Query: 323 ISARNNL--EAYVF---NV-----KQALDNAGNKLTESE-----------KS-----RCR 356
I R+ L + VF NV L A +L ++ K+ C
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 357 EECDATLK--------WLDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 396
++ WL L + + L+ LQK +
Sbjct: 173 ---SYKVQCKMDFKIFWL---NLKNCNSPETVLEMLQKLLYQIDPNWT 214
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 57.1 bits (137), Expect = 3e-09
Identities = 21/166 (12%), Positives = 49/166 (29%), Gaps = 31/166 (18%)
Query: 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT 60
G L + GD+ LG + + L+ +
Sbjct: 183 GKLSGISKIYGDSSLGVSLVTSAVKDALSLARTK-------------------------- 216
Query: 61 LSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHD 120
SS A I D +I+ + ++ L+ +E+ + + + S
Sbjct: 217 -GSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTH 275
Query: 121 VVLVGGSTRIPKVQSLLQNFF--CGKSLNLSINPDEAVAYGAAVQA 164
V+++GG + + ++ + + N + G +
Sbjct: 276 VMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 2e-08
Identities = 71/393 (18%), Positives = 126/393 (32%), Gaps = 116/393 (29%)
Query: 4 FEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS 63
FE + +L G D + L + L +E K + + R A+R S+
Sbjct: 91 FE------NCYLEGNDI-HALAAKLLQENDTTLVKTKEL-IKNYITARIMAKRPFDKKSN 142
Query: 64 S------TEASIEIDALYDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLD 114
S E + ++ A++ G D Y FEEL DL+ T + L +
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDY-------FEEL-RDLY-QTYHVLVGDL----IK 189
Query: 115 KSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL-------SINPDEAVAYGAAV----- 162
SA L+ + K + LN+ S PD+ +
Sbjct: 190 FSAETLSELIRTTLDAEK--------VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 163 ---QAAILSGDQSSAIQDVLLVDVTPLSLGIETAG--GVMTKLIERNTRIPCKQTQTFTT 217
Q A +L TP L G G L+ T + +T ++ +
Sbjct: 242 GVIQLA-----HYVVTAKLL--GFTPGELRSYLKGATGHSQGLV---TAVAIAETDSWES 291
Query: 218 YADN-QPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANG----- 271
+ + + A+T+ F G R + T +PP+ + D N
Sbjct: 292 FFVSVRKAITVLFFIGVRC-------YEAYPNTSLPPS--------ILEDSLENNEGVPS 336
Query: 272 -ILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLE 330
+L+++ L++E++ +N + ++ IS N +
Sbjct: 337 PMLSIS-------------------NLTQEQVQDYVNKTNSHLPAGKQV--EISLVNGAK 375
Query: 331 AYVFNVK---QALDNAGNKLTESEKSRCREECD 360
V V Q+L L K++ D
Sbjct: 376 NLV--VSGPPQSLYGLNLTL---RKAKAPSGLD 403
Score = 47.7 bits (113), Expect = 6e-06
Identities = 54/316 (17%), Positives = 97/316 (30%), Gaps = 119/316 (37%)
Query: 77 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKS---AIHDVVLVGGSTRIPKV 133
G+D Y A+ D++ +A D + +I D+V+ P
Sbjct: 1632 GMDLYKTSKAAQ------DVW-------NRA--DNHFKDTYGFSILDIVINN-----PV- 1670
Query: 134 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 193
+L +F K + N Y A + I+ G + + + ++ S
Sbjct: 1671 -NLTIHFGGEKGKRIREN------YSAMIFETIVDGKLKT---EKIFKEINEHS------ 1714
Query: 194 GGVMTKLIERNTRIPCKQTQTFTTYADNQPA-VTIQV--FEGERAMTKDNNLLGTFDLTG 250
T R+ + TQ FT QPA ++ FE +
Sbjct: 1715 ----TSYTFRSEKGLLSATQ-FT-----QPALTLMEKAAFE---DLKS------------ 1749
Query: 251 IPPAPRGVPKIDVTFDLDA-------------NGILNVTAKDTSS-----GKSQNITIKN 292
+G+ D TF A ++++ + G + + +
Sbjct: 1750 -----KGLIPADATF---AGHSLGEYAALASLADVMSI--ESLVEVVFYRGMTMQVAVPR 1799
Query: 293 DKGRLSKEEI-----DRMINDAERYKDEDERQ-KERISARNN--LEAYV-FNV------- 336
D+ S + R+ A + E + ER+ R +E V +NV
Sbjct: 1800 DELGRSNYGMIAINPGRV---AASFSQEALQYVVERVGKRTGWLVEI-VNYNVENQQYVA 1855
Query: 337 ---KQALDNAGNKLTE 349
+ALD N L
Sbjct: 1856 AGDLRALDTVTNVLNF 1871
Score = 46.2 bits (109), Expect = 2e-05
Identities = 60/336 (17%), Positives = 101/336 (30%), Gaps = 118/336 (35%)
Query: 17 GEDFDNRLVSHLAEE-FKR--KYKKDM---SV------NPRAL---------RRLRTAAE 55
G D S A++ + R + KD S+ NP L +R+R E
Sbjct: 1632 GMDL--YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR---E 1686
Query: 56 R-AKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFR--STLQP----VEKA- 107
+ + + ++ + ++ I+ + F L T QP +EKA
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINE--HSTSYTFRSEKGLLSATQFT-QPALTLMEKAA 1743
Query: 108 LQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSL-----------NLSINPDEA- 155
+D K K G IP F G SL +SI +
Sbjct: 1744 FEDLK-SK---------GL---IPA-----DATFAGHSLGEYAALASLADVMSI--ESLV 1783
Query: 156 --VAY-GAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQT 212
V Y G +Q A+ + + + ++ + P + + + ++ER K+T
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRS--NYGMIAINPGRVAASFSQEALQYVVERV----GKRT 1837
Query: 213 QTFTTYA-DNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLD-AN 270
N V G+ LD
Sbjct: 1838 GWLVEIVNYNVENQQY-VAAGDLR------------------------------ALDTVT 1866
Query: 271 GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMI 306
+LN K Q I I + LS EE++ +
Sbjct: 1867 NVLNFI-------KLQKIDIIELQKSLSLEEVEGHL 1895
Score = 38.9 bits (90), Expect = 0.003
Identities = 55/262 (20%), Positives = 92/262 (35%), Gaps = 84/262 (32%)
Query: 185 PLSL--G-IETAGGVMTKLIERNTRIPCKQTQ-TFTTYADNQPAVTIQVFEGERAMTKDN 240
PL+L G +E L+ + Q Q F P T + F + T
Sbjct: 8 PLTLSHGSLEH-----VLLVPTASFFIASQLQEQFN---KILPEPT-EGFAADDEPTTPA 58
Query: 241 NLLGTFDL----TGIPPAPRG----VPKIDVT-FD---LDANGILNVTAK-----DTSSG 283
L+G F L + + P+ G V + +T F+ L+ N I + AK DT+
Sbjct: 59 ELVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 284 KSQNITIKN--DKGRLSKEEIDRMINDA----------------------ERYKDEDERQ 319
K++ + IKN ++K D+ N A + Y +E
Sbjct: 118 KTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE---- 172
Query: 320 KERISARNNL----EAYVFNVKQALDNAGNKLTESEKSRCREE------CDATLKWLDNN 369
L + Y V + + L+E ++ E + L+WL+N
Sbjct: 173 ---------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LEWLENP 222
Query: 370 TLADKEEYQDKLQQLQKSCMPL 391
+ ++Y L + SC PL
Sbjct: 223 SNTPDKDY---LLSIPISC-PL 240
Score = 37.7 bits (87), Expect = 0.008
Identities = 30/176 (17%), Positives = 51/176 (28%), Gaps = 76/176 (43%)
Query: 44 PRALRRLRTAAERAK--------RT------------------------LSSSTE----- 66
P++L L +AK R L +++
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 67 ---ASIEIDA------LY---DGIDFYTKISRARFEELCSDLFRSTLQPV--EKALQDAK 112
++ +A +Y DG D +S + E + + R PV E Q
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDL-RVLSGSISERIVDCIIR---LPVKWETTTQF-- 496
Query: 113 LDKSAIHDVVLV---GGSTRIPK-VQSLLQNFFCGKSLN------LSINPDEAVAY 158
A H +L GG++ + G + L INPD+ +
Sbjct: 497 ---KATH--ILDFGPGGASGLGVLTHRNKD----GTGVRVIVAGTLDINPDDDYGF 543
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 48.0 bits (115), Expect = 2e-06
Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 46/156 (29%)
Query: 9 TAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEAS 68
D GG L F+ AE K+ S E
Sbjct: 163 ATFDEPTGGTHLSLVLAGSYKIPFE-------------------EAETIKKDFSRHREIM 203
Query: 69 IEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST 128
+ + ++ + +++ + V +VGG+
Sbjct: 204 RVVRPV--------------------------IEKMALIVKEVIKNYDQTLPVYVVGGTA 237
Query: 129 RIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 164
+ F GK + + I+P G A+
Sbjct: 238 YLTGFSEEFSRFL-GKEVQVPIHPLLVTPLGIALFG 272
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.1 bits (98), Expect = 9e-05
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 301 EIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL-DNAGNKLTESEKSRCREEC 359
+ DR+ + E + E Q++R+ + ++Q + A L E + + E+
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASK---VMEQEWREKAKKDLEEWNQRQ-SEQV 131
Query: 360 DATLKWLDNNTLADKEEYQD 379
+ K NN +ADK YQ
Sbjct: 132 E---KNKINNRIADKAFYQQ 148
Score = 32.4 bits (73), Expect = 0.16
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 284 KSQNITIKNDKGRLSKEEIDRMINDAERYKDE-DERQKERI-----SARNNLEAYV 333
+ Q ++ + SK A++ +E ++RQ E++ + R +A+
Sbjct: 92 EEQRKRLQ-ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
Score = 30.1 bits (67), Expect = 0.84
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 350 SEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKS 387
++ R +E ++ KW +EE + +LQ+L +
Sbjct: 75 AQADRLTQEPESIRKW--------REEQRKRLQELDAA 104
Score = 30.1 bits (67), Expect = 1.0
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 349 ESEKSRC-REECDATLKWLDNNTLADKEEYQDKLQQ 383
E E R REE L+ LD + ++E+++K ++
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 40.0 bits (93), Expect = 0.001
Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 4/116 (3%)
Query: 56 RAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDK 115
+ T E AL +G + + L+ K ++
Sbjct: 218 TDLNNGNLITNEQAE-SALNNGYMKKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFKL 276
Query: 116 SAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 171
+ ++ +GG+T+ ++ + + + ++ N G A Q
Sbjct: 277 DQLDSLIFIGGTTQK--LKEQISKTY-PNNSIITNNSQWTTCEGLYKVAVAKYCIQ 329
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 37.1 bits (86), Expect = 0.007
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 45 RALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPV 104
R+ AAE KRT +T + + + L D + S R + + Q +
Sbjct: 232 RSFNLDLLAAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQEL 291
Query: 105 EKALQ--DAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF 141
++L+ +L++++ L+GG +++ + SLL +
Sbjct: 292 RRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTL 330
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 37.4 bits (87), Expect = 0.008
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 118 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSS 173
I ++L+GG + +++L + G + DE VA GAA QAA + ++
Sbjct: 425 ITRILLIGGGAKSEAIRTLAPSIL-GMDVTR-PATDEYVAIGAARQAAWVLSGETE 478
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 35.0 bits (80), Expect = 0.038
Identities = 21/169 (12%), Positives = 44/169 (26%), Gaps = 31/169 (18%)
Query: 6 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST 65
V + + G DF R+ A +K + R + E + L+ T
Sbjct: 207 VEEESFVINKGTIDFYKRI----ASHVSKKSE----GASITPRMIEKGLEYKQCKLNQKT 258
Query: 66 EASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVG 125
+ F + L + E + + I +++ G
Sbjct: 259 VIDF----------------KDEFYKEQDSLIEEVMSNFEITVGNINS----IDRIIVTG 298
Query: 126 GSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSA 174
G I L +++ + + + G +L
Sbjct: 299 GGANI--HFDSLSHYY-SDVFEKADDSQFSNVRGYEKLGELLKNKVEQE 344
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 33.7 bits (78), Expect = 0.097
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 118 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSS 173
V L+GG R + +L + G+ L+ D A GAA A I + + S
Sbjct: 387 PQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAANPEKS 441
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.14
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 202 ERNTRIPCKQTQ-TFTTYA-DNQPAVTIQ 228
E+ + K+ Q + YA D+ PA+ I+
Sbjct: 18 EKQA-L--KKLQASLKLYADDSAPALAIK 43
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation
initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1
c.65.1.1 PDB: 2fmt_A* 3r8x_A
Length = 314
Score = 32.9 bits (76), Expect = 0.15
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 38/106 (35%)
Query: 159 GAA-VQAAILSGDQSSAIQ-----------DVLLVDVTPLSLGIETAGGVMTKL------ 200
GAA +Q ++ +GD + + D+L P++ +T+G + KL
Sbjct: 119 GAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAE-DTSGTLYDKLAELGPQ 177
Query: 201 --------IERNTRIPCKQTQTFTTYAD-----------NQPAVTI 227
+ T P Q +T TYA+ + A +
Sbjct: 178 GLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQL 223
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 32.4 bits (73), Expect = 0.24
Identities = 20/155 (12%), Positives = 49/155 (31%), Gaps = 33/155 (21%)
Query: 6 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST 65
V + +G D + L +A+E D+ A+ A
Sbjct: 215 VVELSFSLQIGVGDAISALSRKIAKETGFVVPFDL-------------AQEALSHPVMFR 261
Query: 66 EASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVG 125
+ + ++S E+L + + ++ + L+ + + ++ VG
Sbjct: 262 QKQVGG----------PEVSGPILEDLANRI----IENIRLNLRG---EVDRVTSLIPVG 304
Query: 126 GSTRIPKVQSLLQNFFCGKSLNLSI-NPDEAVAYG 159
G + + + + G + + + A A G
Sbjct: 305 GGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A
{Coxiella burnetii}
Length = 314
Score = 32.1 bits (74), Expect = 0.28
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 38/106 (35%)
Query: 159 GAA-VQAAILSGDQSSAIQ-----------DVLLVDVTPLSLGIETAGGVMTKL------ 200
GAA +Q AIL+GD+ + I DVL +S +TA + +L
Sbjct: 118 GAAPIQRAILAGDRETGISIMQMNEGLDTGDVLAKSACVISSE-DTAADLHDRLSLIGAD 176
Query: 201 --------IERNTRIPCKQTQTFTTYAD-----------NQPAVTI 227
+E+ KQ + TYA + AV I
Sbjct: 177 LLLESLAKLEKGDIKLEKQDEASATYASKIQKQEALIDWRKSAVEI 222
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 31.6 bits (72), Expect = 0.54
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 17/110 (15%)
Query: 45 RALRRLRTAAERAKRT-----LSSSTEASIEIDALYDGIDFYTKISR--------ARFEE 91
L +ER T + E I+ L + + AR E
Sbjct: 247 AVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLDG--NTIKTTTAKKLSVIIHARLRE 304
Query: 92 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF 141
+ S + + VE + + VVL GG +IP++ L F
Sbjct: 305 IMS-KSKKFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVF 352
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 31.5 bits (72), Expect = 0.57
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 3/94 (3%)
Query: 94 SDLFRSTLQPVEKALQDA--KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSIN 151
+ + + L+ +L+ L + + +VGG R ++ + SL + +
Sbjct: 377 AQILLAVLEGAALSLRWCAELLGMEKVGLLKVVGGGARSEAWLRMIADNL-NVSLLVKPD 435
Query: 152 PDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTP 185
G A AA+ S + D+
Sbjct: 436 AHLHPLRGLAALAAVELEWSHSIQDFLREADLRE 469
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport,
iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli
K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A*
3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A*
3qim_A
Length = 502
Score = 30.0 bits (68), Expect = 1.4
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 268 DANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 320
D + L+ + + +G K ID+ I + DE +RQ
Sbjct: 403 DPHAFLSSMRVPSHADFQAQ------QGLADKPLIDKEIGEVLATHDETQRQA 449
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 29.2 bits (65), Expect = 1.8
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 306 INDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKW 365
IND ++K E E ++ + ++Q +S++ R+ +
Sbjct: 13 INDWRKFKLESEDGDSIPPSKKEI------LRQMSSPQSRDDKDSKERMSRKMSIQEYEL 66
Query: 366 LDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 396
+ +E + L++ ++ CM M +
Sbjct: 67 IH-----QDKEDEGCLRKYRRQCMQDMHQKL 92
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 28.8 bits (64), Expect = 2.2
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 255 PRGVPKIDVTFDLDANGILNVTA-KDTSSGKSQNITIK 291
P V + +T L ++G+L V + SG + I I
Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPIT 162
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 28.9 bits (65), Expect = 3.4
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 153 DEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIER 203
+ A GAA+ A++ +G + IE A M ++ +
Sbjct: 474 KQTPALGAAMFASVAAGSEVGGYDS------------IEEAAKKMGRVKDE 512
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 28.7 bits (64), Expect = 3.9
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 335 NVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 386
+ +A + S+C C ++ K EY+ Q K
Sbjct: 200 KLNSECISAECTNGSVDNSKCTHACVNYKNYILTK----KTEYE---IQTNK 244
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide
biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP:
b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Length = 329
Score = 28.3 bits (64), Expect = 4.5
Identities = 17/107 (15%), Positives = 29/107 (27%), Gaps = 39/107 (36%)
Query: 159 GAA-VQAAILSGDQSSAIQ-----------DVLLVDVTPLSLGIETAGGVMTK------- 199
GA+ + ++ GD+ D+LL + +T + +
Sbjct: 137 GASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPD-DTVSTLYNRFLFPEGI 195
Query: 200 --------LIERNTRIPCKQTQTFTTYAD-----------NQPAVTI 227
LI Q + TY +QPA I
Sbjct: 196 KGMVQAVRLIAEGKAPRLPQPEEGATYEGIQKKETAKINWDQPAEAI 242
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 28.4 bits (63), Expect = 5.1
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 317 ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEE 376
ER + + R N K+ N+ + + + C+ +C+ K++ K+E
Sbjct: 247 ERLRYEQNIREACTINGKNEKKC-INSKSGQGDKIQGACKRKCEKYKKYISEK----KQE 301
Query: 377 YQDKLQQLQK 386
+ +Q K
Sbjct: 302 W---DKQKTK 308
>1d8h_A MRNA triphosphatase CET1; beta subunit, polynucleotide 5'-triphosp
mRNA processing, mRNA capping, nuclear protein beta
barrel; 2.00A {Saccharomyces cerevisiae} SCOP: d.63.1.1
PDB: 1d8i_A 3kyh_A
Length = 311
Score = 27.7 bits (61), Expect = 6.6
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 18/115 (15%)
Query: 251 IPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGR------LSKEEIDR 304
+ + + + ++ D+ + K + + + K L+ E
Sbjct: 144 VGLSTQRPRFLRMSTDIKTGRVGQFIEKR----HVAQLLLYSPKDSYDVKISLNLELPVP 199
Query: 305 MINDAERYKDED---ERQKERISARNNLEAYVF---NVKQALDNAGNKLTESEKS 353
+ E+YK + ER K+R+S +N V+ N +K +SE +
Sbjct: 200 DNDPPEKYKSQSPISERTKDRVSYIHNDSCTRIDITKVEN--HNQNSKSRQSETT 252
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 27.2 bits (61), Expect = 7.5
Identities = 3/21 (14%), Positives = 12/21 (57%)
Query: 296 RLSKEEIDRMINDAERYKDED 316
R+++++ + + + +D D
Sbjct: 117 RITEDQCNDIFTFCDIREDID 137
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 27.1 bits (61), Expect = 7.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 296 RLSKEEIDRMINDAERYKDED 316
RLS E++D +I + +D +
Sbjct: 116 RLSDEDVDEIIKLTDLQEDLE 136
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine
sulfoxide reductase B, reduced form, disulfide bond;
1.82A {Neisseria meningitidis serogroup A} PDB: 3hch_A*
1l1d_A
Length = 146
Score = 26.7 bits (60), Expect = 8.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 5 EVRSTAGDTHLG 16
EVRS A D+HLG
Sbjct: 92 EVRSHAADSHLG 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 27.8 bits (61), Expect = 8.7
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 338 QALDNAGNKLTESEKSRCREECDATLKWLD--NNTLADKEEYQDKLQQL 384
Q L N+L +S + C L L+ N+L +E Q++L ++
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSC-PRLVLLNLQGNSLCQEEGIQERLAEM 558
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.363
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,220,088
Number of extensions: 379661
Number of successful extensions: 1303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1260
Number of HSP's successfully gapped: 89
Length of query: 418
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 322
Effective length of database: 4,021,377
Effective search space: 1294883394
Effective search space used: 1294883394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.0 bits)