BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7646
         (301 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4H0Q|A Chain A, Crystal Structure Of A Acidic Pla2 From Trimeresurus
           Stejnegeri Venom
 pdb|4H0Q|B Chain B, Crystal Structure Of A Acidic Pla2 From Trimeresurus
           Stejnegeri Venom
          Length = 121

 Score = 31.2 bits (69), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 171 NGID-NEDKYKYSSGPGGVVCYSRTPGSRQPSPTDDGSEL 209
           NG D  ED Y+YSS  G +VC +  P +++    D  + +
Sbjct: 55  NGCDPKEDFYRYSSNNGDIVCEANNPCTKEICECDKAAAI 94


>pdb|3RHE|A Chain A, The Crystal Structure Of Nad-Dependent Benzaldehyde
           Dehydrogenase From Legionella Pneumophila
          Length = 148

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 13/67 (19%)

Query: 24  LWGVEEGKEDSHKTGGGGILNLN-------DQMWRDSTWSTSDHGVTQGMAMVPSARRPG 76
           LW  EE +  +H+TGGG  L+         D++ R   WS  +  + Q     P+    G
Sbjct: 52  LWAQEEIEPKAHQTGGGXELSFQVNSNEXVDEIHRQ--WSDKEISIIQP----PTQXDFG 105

Query: 77  ATFPGTD 83
            TF G D
Sbjct: 106 YTFVGVD 112


>pdb|1ITV|A Chain A, Dimeric Form Of The Haemopexin Domain Of Mmp9
 pdb|1ITV|B Chain B, Dimeric Form Of The Haemopexin Domain Of Mmp9
          Length = 195

 Score = 28.1 bits (61), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 21/98 (21%)

Query: 84  NGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVLNSDGSDVKKEKDKAP 143
            GA VL PR  D  GLG  + + V G   +          RG +L   G  + +      
Sbjct: 79  TGASVLGPRRLDKLGLGADVAQ-VTGALRSG---------RGKMLLFSGRRLWR------ 122

Query: 144 ASPYDVKKELVDASGAIQTNGMVPVVQNGIDNEDKYKY 181
              +DVK ++VD   A + + M P V   +D  D +++
Sbjct: 123 ---FDVKAQMVDPRSASEVDRMFPGVP--LDTHDVFQF 155


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.129    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,297,494
Number of Sequences: 62578
Number of extensions: 476347
Number of successful extensions: 747
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 7
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (24.3 bits)