BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7646
(301 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1
SV=2
Length = 1533
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 98/200 (49%), Gaps = 42/200 (21%)
Query: 20 SAKKLWGVEEGKEDSHKTGGGGILNLN-------DQMWRDSTWSTSDHGVTQGMAMVPSA 72
+AKKLW +GK S T GG + L +W+D TWST + +VP
Sbjct: 377 TAKKLWEKSDGKGVSSSTPGGPLHPLQIPGIGDPSSVWKDHTWSTQGENI-----LVPPP 431
Query: 73 RRP----GATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDN---GLEPRMRG 125
R GA+ AG+LSPR S + K+VEYV SPT+KD+ GLEP +R
Sbjct: 432 SRAYAHGGASDTSNSGNAGILSPRDSTCA----KVVEYVFSGSPTNKDSSLSGLEPHLRN 487
Query: 126 LVLNSDGSDVKKEKDKAPASPYDVKKELVDASGAIQTNGMVPVVQNGIDNEDKYKYSSGP 185
L + D + +K+KA SP+D L +NG+V NGID++ +
Sbjct: 488 LKFD-DNDKSRDDKEKA-NSPFDTNG-LKKDDQVTNSNGVV----NGIDDDKGF------ 534
Query: 186 GGVVCYSRTPGSRQPSPTDD 205
+RTPGSRQPSP ++
Sbjct: 535 ------NRTPGSRQPSPAEE 548
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 248 GATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKD---NGLEPRMRGLVLE 301
GA+ AG+LSPR S + K+VEYV SPT+KD +GLEP +R L +
Sbjct: 439 GASDTSNSGNAGILSPRDSTCA----KVVEYVFSGSPTNKDSSLSGLEPHLRNLKFD 491
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
Length = 1066
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 95/192 (49%), Gaps = 38/192 (19%)
Query: 22 KKLWGVEEGKEDSHKTGGGGILNLNDQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFPG 81
KK W +DS K G GI L D WR++ W TS H ++Q + + RR G +F G
Sbjct: 22 KKFWE----PDDSTKDGQKGIF-LGDDEWRETAWGTSHHSMSQPIMV---QRRSGQSFHG 73
Query: 82 TDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVLNSDGSDV---KKE 138
+LSPRS +S GLGV MVEYVL +SP K L+ R R + ++ +K
Sbjct: 74 NSEVNAILSPRS-ESGGLGVSMVEYVLSSSPADK---LDSRFRKGTFGTRDAETDGPEKG 129
Query: 139 KDKAPASPY------DVKKELVDASGAIQTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYS 192
K ASP+ D+K++ D I G+ NG+D + K ++
Sbjct: 130 DQKGKASPFEEDQNRDLKQD--DEDSKINGRGL----PNGMDADCK-----------DFN 172
Query: 193 RTPGSRQPSPTD 204
RTPGSRQ SPT+
Sbjct: 173 RTPGSRQASPTE 184
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 229 SSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKD 288
+S H ++Q + + RR G +F G +LSPRS +S GLGV MVEYVL +SP K
Sbjct: 52 TSHHSMSQPIMV---QRRSGQSFHGNSEVNAILSPRS-ESGGLGVSMVEYVLSSSPADK- 106
Query: 289 NGLEPRMR 296
L+ R R
Sbjct: 107 --LDSRFR 112
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 103/203 (50%), Gaps = 48/203 (23%)
Query: 22 KKLWGVEEGKEDSHKTGGGGILNLNDQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFPG 81
KK W +E +D G GI L DQ WRDS W TSDH V+Q + + RRPG +F
Sbjct: 150 KKFWETDESSKD----GPKGIF-LGDQ-WRDSAWGTSDHSVSQPIMV---QRRPGQSFHV 200
Query: 82 TDNGAGVLSPRSSDSSGLGVKMVEYVLGTSP---TSKDNGLEPRMRGLVLNSDGSDVKKE 138
VLSPRS +S GLGV MVEYVL +SP + G PR +SD +D ++
Sbjct: 201 NSEVNSVLSPRS-ESGGLGVSMVEYVLSSSPGDSCLRKGGFGPRDA----DSDENDKGEK 255
Query: 139 KDKAPA---SPYDVKKE--LVDASGAIQTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSR 193
K+K D+K+E ++D +TNG+ VQNGID + K +SR
Sbjct: 256 KNKGTFDGDKLGDLKEEGDVMD-----KTNGL--PVQNGIDADVK-----------DFSR 297
Query: 194 TPGSRQPS--------PTDDGSE 208
TPG+ Q S P +GSE
Sbjct: 298 TPGNCQNSANEVDLLGPNQNGSE 320
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 229 SSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSP---T 285
+SDH V+Q + + RRPG +F VLSPRS +S GLGV MVEYVL +SP
Sbjct: 179 TSDHSVSQPIMV---QRRPGQSFHVNSEVNSVLSPRS-ESGGLGVSMVEYVLSSSPGDSC 234
Query: 286 SKDNGLEPR 294
+ G PR
Sbjct: 235 LRKGGFGPR 243
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 103/203 (50%), Gaps = 48/203 (23%)
Query: 22 KKLWGVEEGKEDSHKTGGGGILNLNDQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFPG 81
KK W +E +D G GI L DQ WRDS W TSDH V+Q + + RRPG +F
Sbjct: 150 KKFWETDESSKD----GPKGIF-LGDQ-WRDSAWGTSDHSVSQPIMV---QRRPGQSFHV 200
Query: 82 TDNGAGVLSPRSSDSSGLGVKMVEYVLGTSP---TSKDNGLEPRMRGLVLNSDGSDVKKE 138
VLSPRS +S GLGV MVEYVL +SP + G PR +SD +D ++
Sbjct: 201 NSEVNSVLSPRS-ESGGLGVSMVEYVLSSSPGDSCLRKGGFGPRDA----DSDENDKGEK 255
Query: 139 KDKAPA---SPYDVKKE--LVDASGAIQTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSR 193
K+K D+K+E ++D +TNG+ VQNGID + K +SR
Sbjct: 256 KNKGTFDGDKLGDLKEEGDVMD-----KTNGL--PVQNGIDADVK-----------DFSR 297
Query: 194 TPGSRQPS--------PTDDGSE 208
TPG+ Q S P +GSE
Sbjct: 298 TPGNCQNSANEVDLLGPNQNGSE 320
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 229 SSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSP---T 285
+SDH V+Q + + RRPG +F VLSPRS +S GLGV MVEYVL +SP
Sbjct: 179 TSDHSVSQPIMV---QRRPGQSFHVNSEVNSVLSPRS-ESGGLGVSMVEYVLSSSPGDSC 234
Query: 286 SKDNGLEPR 294
+ G PR
Sbjct: 235 LRKGGFGPR 243
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 103/203 (50%), Gaps = 48/203 (23%)
Query: 22 KKLWGVEEGKEDSHKTGGGGILNLNDQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFPG 81
KK W +E +D G GI L DQ WRDS W TSDH V+Q + + RRPG +F
Sbjct: 150 KKFWETDESSKD----GPKGIF-LGDQ-WRDSAWGTSDHSVSQPIMV---QRRPGQSFHV 200
Query: 82 TDNGAGVLSPRSSDSSGLGVKMVEYVLGTSP---TSKDNGLEPRMRGLVLNSDGSDVKKE 138
VLSPRS +S GLGV MVEYVL +SP + G PR +SD +D ++
Sbjct: 201 NSEVNSVLSPRS-ESGGLGVSMVEYVLSSSPGDSCLRKGGFGPRDA----DSDENDKGEK 255
Query: 139 KDKAPA---SPYDVKKE--LVDASGAIQTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSR 193
K+K D+K+E ++D +TNG+ VQNGID + K +SR
Sbjct: 256 KNKGTFDGDKLGDLKEEGDVMD-----KTNGL--PVQNGIDADVK-----------DFSR 297
Query: 194 TPGSRQPS--------PTDDGSE 208
TPG+ Q S P +GSE
Sbjct: 298 TPGNCQNSANEVDLLGPNQNGSE 320
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 229 SSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSP---T 285
+SDH V+Q + + RRPG +F VLSPRS +S GLGV MVEYVL +SP
Sbjct: 179 TSDHSVSQPIMV---QRRPGQSFHVNSEVNSVLSPRS-ESGGLGVSMVEYVLSSSPGDSC 234
Query: 286 SKDNGLEPR 294
+ G PR
Sbjct: 235 LRKGGFGPR 243
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 98/202 (48%), Gaps = 46/202 (22%)
Query: 22 KKLWGVEEGKEDSHKTGGGGILNLNDQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFPG 81
KK W +DS K G GI L DQ WRDS W TSDH V+Q + + RRPG F
Sbjct: 150 KKFWE----SDDSSKDGPKGIF-LGDQ-WRDSAWGTSDHSVSQPIMV---QRRPGQGFHV 200
Query: 82 TDNGAGVLSPRSSDSSGLGVKMVEYVLGTSP---TSKDNGLEPRMRGLVLNSDGSDVKKE 138
VLSPRS +S GLGV MVEYVL +SP + G PR D + + +
Sbjct: 201 NSEVNSVLSPRS-ESGGLGVSMVEYVLSSSPGDSCLRKGGFGPR--------DAENDEND 251
Query: 139 K-DKAPASPYDVKK--ELVDASGAI-QTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSRT 194
K DK +D K +L + + +TNG+ VQNGID + K +SRT
Sbjct: 252 KGDKKNKGTFDGDKLGDLKEEGDVMDKTNGL--PVQNGIDTDVK-----------DFSRT 298
Query: 195 PGSRQPS--------PTDDGSE 208
PG+ Q S P +GSE
Sbjct: 299 PGNCQNSASEVDLLGPNQNGSE 320
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 229 SSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSP---T 285
+SDH V+Q + + RRPG F VLSPRS +S GLGV MVEYVL +SP
Sbjct: 179 TSDHSVSQPIMV---QRRPGQGFHVNSEVNSVLSPRS-ESGGLGVSMVEYVLSSSPGDSC 234
Query: 286 SKDNGLEPR 294
+ G PR
Sbjct: 235 LRKGGFGPR 243
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2
Length = 1066
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 90/191 (47%), Gaps = 35/191 (18%)
Query: 22 KKLWGVEEGKEDSHKTGGGGILNLNDQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFPG 81
KK W +DS K G GI L D WR++ W S H ++Q + + RR G F G
Sbjct: 22 KKFWE----PDDSTKDGQKGIF-LGDDEWRETAWGASHHSMSQPIMV---QRRSGQGFHG 73
Query: 82 TDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVL-----NSDGSDVK 136
+LSPRS +S GLGV MVEYVL +SP K L+ R R +DG +
Sbjct: 74 NSEVNAILSPRS-ESGGLGVSMVEYVLSSSPADK---LDSRFRKGNFGTRDAETDGPEKG 129
Query: 137 KEKDKAPASPYDVKKELV---DASGAIQTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSR 193
+K KA D ++L D I G+ NG+D + K ++R
Sbjct: 130 DQKGKASPFEEDQNRDLKQGDDDDSKINGRGL----PNGMDADCK-----------DFNR 174
Query: 194 TPGSRQPSPTD 204
TPGSRQ SPT+
Sbjct: 175 TPGSRQASPTE 185
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 229 SSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKD 288
+S H ++Q + + RR G F G +LSPRS +S GLGV MVEYVL +SP K
Sbjct: 52 ASHHSMSQPIMV---QRRSGQGFHGNSEVNAILSPRS-ESGGLGVSMVEYVLSSSPADK- 106
Query: 289 NGLEPRMR 296
L+ R R
Sbjct: 107 --LDSRFR 112
>sp|Q930I4|HISX2_RHIME Histidinol dehydrogenase 2 OS=Rhizobium meliloti (strain 1021)
GN=hisD2 PE=3 SV=1
Length = 456
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 83 DNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVLNSDGSDVKKEKDKA 142
+ A +L +D SG ++ V +L T D L R L D +DV + K
Sbjct: 29 EEKAALLRRSETDISGF-IEKVAPILEAVRTEGDKALARFGREL----DKADVTEANLKV 83
Query: 143 PASPYDVKKELVDASGAIQTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSRTPGS 197
A+ +D +LVDAS ++ VQ GIDN K+ P + PG+
Sbjct: 84 TAAEFDAAFKLVDAS-------VLESVQFGIDNIRKFHEEQKPEAMWLKEIRPGA 131
>sp|A6W2W4|GUAA_MARMS GMP synthase [glutamine-hydrolyzing] OS=Marinomonas sp. (strain
MWYL1) GN=guaA PE=3 SV=1
Length = 525
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 189 VCYSRTPGSRQPSPTDDGSELAAVQAAVHHSHQKPARFSDSSDHGVTQGMAMV 241
+CY + Q GSE+ A H+ PA F D DH G+A++
Sbjct: 85 ICYGMQTMAEQLGGKVQGSEIREFGYAQIRKHEGPALFDDIQDHIANNGVALL 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,089,145
Number of Sequences: 539616
Number of extensions: 6351321
Number of successful extensions: 12560
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 12492
Number of HSP's gapped (non-prelim): 72
length of query: 301
length of database: 191,569,459
effective HSP length: 117
effective length of query: 184
effective length of database: 128,434,387
effective search space: 23631927208
effective search space used: 23631927208
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (28.1 bits)