Query psy7646
Match_columns 301
No_of_seqs 65 out of 67
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 23:44:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4drb_C Fanconi anemia group M 10.0 2.1E+02 0.0071 24.5 3.3 51 9-61 37-93 (141)
2 1mb1_A MBP1, MLU1-box binding 6.5 1.2E+02 0.004 25.3 0.2 22 188-209 99-120 (130)
3 3nrl_A Uncharacterized protein 6.2 2E+02 0.007 22.5 1.4 20 277-296 55-74 (81)
4 1uew_A Membrane associated gua 5.3 5.6E+02 0.019 18.6 3.4 24 275-298 46-69 (114)
5 4gb3_2 Coat protein 2; capsid 4.7 2.1E+02 0.0072 26.2 0.7 20 267-286 118-138 (263)
6 2jva_A Peptidyl-tRNA hydrolase 4.1 2.6E+02 0.0089 22.3 0.8 15 179-194 19-33 (108)
7 2ymv_A ACG nitroreductase; oxi 3.7 2.1E+02 0.0071 25.8 -0.2 20 208-228 16-35 (330)
8 1ev7_A Type IIE restriction en 3.4 2.8E+02 0.0095 26.4 0.4 10 169-178 88-97 (317)
9 2eq7_C 2-oxoglutarate dehydrog 3.3 5.1E+02 0.017 16.1 1.6 18 170-189 12-29 (40)
10 2eq9_C Pyruvate dehydrogenase 3.3 5.2E+02 0.018 16.1 1.6 18 170-189 13-30 (41)
No 1
>4drb_C Fanconi anemia group M protein; DNA repair, DNA binding complex, histone fold, DNA damage RE binding, DNA binding-protein binding complex; 2.63A {Homo sapiens}
Probab=9.98 E-value=2.1e+02 Score=24.47 Aligned_cols=51 Identities=24% Similarity=0.541 Sum_probs=27.2
Q ss_pred eccccccccCccccccccccCCCCCCC-CCCCCCccc--cCc-ccccCCCCCC--CCCC
Q psy7646 9 GNDDTKQTIAPSAKKLWGVEEGKEDSH-KTGGGGILN--LND-QMWRDSTWST--SDHG 61 (301)
Q Consensus 9 ~~~~~~~~iap~aKKlWe~~e~~kd~~-k~~~~gil~--l~d-q~WrDstWs~--s~Hs 61 (301)
-+|.|++.|+|.+ .|=-..+ .++.. ..+..||-. |.+ ..|++..-.+ .+|+
T Consensus 37 esd~ik~~~lp~~-~F~sL~~-~~~~~~~~~~~~~~~LSLsEWr~WQn~p~PTh~VdHS 93 (141)
T 4drb_C 37 DSDEIKEITLPQV-QFSSLQN-EENKPAQESTTGIHQLSLSEWRLWQDHPLPTHQVDHS 93 (141)
T ss_dssp TTSSSCEEECCCC-CCTTTC-----------CCSEEECCSSTTGGGCSSCCCCSSSCCC
T ss_pred cccccccccccce-eeeeccC-CCCCcccCCCCCccccchhhhhhhcCCCCCccccChH
Confidence 3577889999987 4433332 22221 233446643 445 6688877777 5676
No 2
>1mb1_A MBP1, MLU1-box binding protein; transcription regulation, cell-cycle, transcription factor; 2.10A {Saccharomyces cerevisiae} SCOP: d.34.1.1 PDB: 1l3g_A
Probab=6.50 E-value=1.2e+02 Score=25.30 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=1.1
Q ss_pred cccccCCCCCCCCCCCCccchh
Q psy7646 188 VVCYSRTPGSRQPSPTDDGSEL 209 (301)
Q Consensus 188 ~~~FnRTPGsrQpSp~E~~~~~ 209 (301)
.++|.+++|.|.|.|+-.-..+
T Consensus 99 Lf~~~~~~g~~~pp~ap~h~~~ 120 (130)
T 1mb1_A 99 LFDFTQTDGSASPPPAPKHHHA 120 (130)
T ss_dssp TC--------------------
T ss_pred eeccCCCCCCcCCCCCCccccc
Confidence 4589999999888777554333
No 3
>3nrl_A Uncharacterized protein rumgna_01417; beta protein, structural genomics, PSI-2, protein structure initiative; 1.90A {Ruminococcus gnavus}
Probab=6.16 E-value=2e+02 Score=22.51 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=16.2
Q ss_pred eeeecCCCCCCCCCCccccc
Q psy7646 277 EYVLGTSPTSKDNGLEPRMR 296 (301)
Q Consensus 277 EYVL~~SPt~k~~~leprmr 296 (301)
|+.|=++|+++++||.-||-
T Consensus 55 eWYLVG~~~~~l~gl~v~~~ 74 (81)
T 3nrl_A 55 DWYLVGLNVSRLDGLRVRML 74 (81)
T ss_dssp SEEEESCCCSCSTTCEEEC-
T ss_pred eEEEEeccccccCCcEEEee
Confidence 67788889999999988874
No 4
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=5.27 E-value=5.6e+02 Score=18.63 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=17.6
Q ss_pred EEeeeecCCCCCCCCCCccccccc
Q psy7646 275 MVEYVLGTSPTSKDNGLEPRMRGL 298 (301)
Q Consensus 275 MVEYVL~~SPt~k~~~leprmr~l 298 (301)
+|..|.-.||..+..+|.+.-+=|
T Consensus 46 ~V~~V~~~spA~~~agL~~GD~I~ 69 (114)
T 1uew_A 46 KIGRIIDGSPADRCAKLKVGDRIL 69 (114)
T ss_dssp EEEEECTTCTTGGGSSCCTTCBEE
T ss_pred EEEEECCCChHHHhCCCCCCCEEE
Confidence 788899999998845677654433
No 5
>4gb3_2 Coat protein 2; capsid protein; HET: PLM MYR; 2.74A {Human coxsackievirus B3} PDB: 1cov_2* 1jew_2 1oop_B* 1mqt_B* 1d4m_2* 1h8t_B* 1upn_B 2x5i_B* 3iyp_C* 1ev1_2* 1m11_2 2c8i_B
Probab=4.68 E-value=2.1e+02 Score=26.15 Aligned_cols=20 Identities=25% Similarity=0.195 Sum_probs=15.8
Q ss_pred CCCCceeEEE-eeeecCCCCC
Q psy7646 267 DSSGLGVKMV-EYVLGTSPTS 286 (301)
Q Consensus 267 ~sGGLGVkMV-EYVL~~SPt~ 286 (301)
|.|-|+|.|| |+.++....+
T Consensus 118 HqG~LlV~~VPE~~~~~~~~~ 138 (263)
T 4gb3_2 118 HQGCLLVVCVPEAEMGCATLD 138 (263)
T ss_dssp CEEEEEEEEEETCCCCBSSTT
T ss_pred hcceEEEEEecceeeccccCC
Confidence 7899999999 8888765543
No 6
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=4.10 E-value=2.6e+02 Score=22.25 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=10.2
Q ss_pred cccCCCCCCcccccCC
Q psy7646 179 YKYSSGPGGVVCYSRT 194 (301)
Q Consensus 179 ~~~~~~~~~~~~FnRT 194 (301)
+.-||||||- .-|.|
T Consensus 19 ~~RssGpGGQ-nVNKv 33 (108)
T 2jva_A 19 AIRAQGAGGQ-NVNKV 33 (108)
T ss_dssp ECCCTTCSSS-SSCCC
T ss_pred EEECCCCCCC-CcCCC
Confidence 5668999995 34443
No 7
>2ymv_A ACG nitroreductase; oxidoreductase, dormancy, reduced FMN; HET: MSE FNR PGE; 1.60A {Mycobacterium smegmatis}
Probab=3.68 E-value=2.1e+02 Score=25.84 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=15.0
Q ss_pred hhhhhhhhhcccCCCCCCCCC
Q psy7646 208 ELAAVQAAVHHSHQKPARFSD 228 (301)
Q Consensus 208 ~~~~~~~~~~h~h~~p~~~s~ 228 (301)
...+..|+++||. |||+|--
T Consensus 16 l~~a~~APs~~n~-qpw~~~~ 35 (330)
T 2ymv_A 16 VQLAARAPSLHNT-QPWRLIA 35 (330)
T ss_dssp HHHHTTCCCGGGC-CCEEEEE
T ss_pred HHHHHhCcCcCCC-cCeEEEE
Confidence 3455778888886 7999975
No 8
>1ev7_A Type IIE restriction endonuclease NAEI; APO-NAEI, topoisomerase, helix- turn-helix, CAP, hydrolase; 2.38A {Lechevalieria aerocolonigenes} SCOP: c.52.1.9 PDB: 1iaw_A
Probab=3.36 E-value=2.8e+02 Score=26.44 Aligned_cols=10 Identities=20% Similarity=0.235 Sum_probs=8.6
Q ss_pred cccCcccccc
Q psy7646 169 VQNGIDNEDK 178 (301)
Q Consensus 169 ~qNGiD~D~K 178 (301)
...|+|.|||
T Consensus 88 ~IaG~dVDcK 97 (317)
T 1ev7_A 88 EIAGVQVDCK 97 (317)
T ss_dssp EETTEEEEEE
T ss_pred EecCceeeee
Confidence 4589999999
No 9
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=3.34 E-value=5.1e+02 Score=16.09 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=10.0
Q ss_pred ccCcccccccccCCCCCCcc
Q psy7646 170 QNGIDNEDKYKYSSGPGGVV 189 (301)
Q Consensus 170 qNGiD~D~K~~~~~~~~~~~ 189 (301)
++|||-. .+..+||+|.+
T Consensus 12 e~gidl~--~v~gtG~~gri 29 (40)
T 2eq7_C 12 EKGVSPA--EVQGTGLGGRI 29 (40)
T ss_dssp HTTCCTT--TSCCCSSSSCC
T ss_pred HhCCChh--hcCCCCCCCcc
Confidence 3556554 34556676654
No 10
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=3.33 E-value=5.2e+02 Score=16.13 Aligned_cols=18 Identities=44% Similarity=0.414 Sum_probs=10.3
Q ss_pred ccCcccccccccCCCCCCcc
Q psy7646 170 QNGIDNEDKYKYSSGPGGVV 189 (301)
Q Consensus 170 qNGiD~D~K~~~~~~~~~~~ 189 (301)
.+|||-. .+..+||+|.+
T Consensus 13 e~gidl~--~v~gtG~~gri 30 (41)
T 2eq9_C 13 ELGIPIE--EVPGSGPLGRV 30 (41)
T ss_dssp HTTCCGG--GSCCCSTTCCB
T ss_pred HcCCChh--hcCCCCCCCcc
Confidence 3566554 34566777654
Done!