Query psy7646
Match_columns 301
No_of_seqs 65 out of 67
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 23:44:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7646.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7646hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g1tme.1 b.121.4.1 (4:,2:) Thei 8.9 30 0.0022 29.8 -0.3 32 246-283 121-153 (280)
2 d1j26a_ d.50.4.1 (A:) Ict1 pro 7.5 94 0.0069 23.0 2.1 29 161-194 12-40 (112)
3 g1ncq.1 b.121.4.1 (D:,B:) Rhin 5.2 83 0.0061 27.2 0.6 19 267-285 151-170 (295)
4 d2cs5a1 b.36.1.1 (A:8-113) Tyr 4.9 4.3E+02 0.031 17.9 4.5 20 275-294 37-57 (106)
5 d1i16a_ b.36.1.2 (A:) Interleu 4.7 3.4E+02 0.025 19.0 3.8 20 275-294 60-79 (130)
6 d2cyua1 a.9.1.1 (A:2-40) E3-bi 4.5 1.5E+02 0.011 18.2 1.4 18 170-189 11-28 (39)
7 d1e2wa1 b.2.6.1 (A:1-168,A:233 4.4 3.8E+02 0.028 21.6 4.2 46 229-282 139-184 (187)
8 d1ci3m1 b.2.6.1 (M:1-169,M:232 4.3 3.6E+02 0.026 21.8 4.0 46 229-282 140-185 (187)
9 d1uhpa_ b.36.1.1 (A:) Hypothet 4.3 1.3E+02 0.0095 20.9 1.1 21 276-296 45-65 (107)
10 d1xeqa1 a.16.1.1 (A:15-103) N- 4.0 43 0.0031 24.5 -1.9 24 270-293 65-88 (89)
No 1
>g1tme.1 b.121.4.1 (4:,2:) Theilovirus capsid proteins {Theiler's murine encephalomyelitis virus, strain da [TaxId: 12124]}
Probab=8.93 E-value=30 Score=29.80 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCCceeEEE-eeeecCC
Q psy7646 246 RPGATFPGTDNGAGVLSPRSSDSSGLGVKMV-EYVLGTS 283 (301)
Q Consensus 246 r~G~~~~g~~~~~~vLSPRss~sGGLGVkMV-EYVL~~S 283 (301)
|-|-.-|.|-.+ |+= |.|.|+|.|| ||+++++
T Consensus 121 R~G~~VhVQcNa----SkF--HqG~LlV~~VPE~~~~~~ 153 (280)
T g1tme.1 121 KTGWRVQVQCNA----SQF--HAGSLLVFMAPEFYTGKG 153 (280)
T ss_dssp EEEEEEEEECCC----CTT--CEEEEEEEEEETCCCCCE
T ss_pred hCCeEEEEEeCC----Chh--hhheEeEEEccceeeccc
Confidence 345445555443 222 6799999999 8887653
No 2
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.50 E-value=94 Score=23.00 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=18.4
Q ss_pred ccCCCccccccCcccccccccCCCCCCcccccCC
Q psy7646 161 QTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSRT 194 (301)
Q Consensus 161 ~~NG~~pv~qNGiD~D~K~~~~~~~~~~~~FnRT 194 (301)
+.|...| .+-|+- ++.-||||||. .-|+|
T Consensus 12 ~~~~~Ip--~~~i~~--~f~RSsGPGGQ-~VNKv 40 (112)
T d1j26a_ 12 QASSYIP--LDRLSI--SYCRSSGPGGQ-NVNKV 40 (112)
T ss_dssp SSCCCCC--TTTSEE--EEECCCCSSSS-CCSSC
T ss_pred hhcCccC--HHHeEE--EEEEcCCCCCC-cccee
Confidence 4455554 355544 48889999996 34544
No 3
>g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14) [TaxId: 12131]}
Probab=5.21 E-value=83 Score=27.18 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=15.3
Q ss_pred CCCCceeEEE-eeeecCCCC
Q psy7646 267 DSSGLGVKMV-EYVLGTSPT 285 (301)
Q Consensus 267 ~sGGLGVkMV-EYVL~~SPt 285 (301)
|.|-|+|.|| ||++++...
T Consensus 151 HqG~LlV~~VPE~~~~~~~~ 170 (295)
T g1ncq.1 151 HSGCLLVVVIPEHQLASHEG 170 (295)
T ss_dssp CEEEEEEEEEETCCCCBTTC
T ss_pred ccceEEEEEecceeecccCC
Confidence 6799999999 788876543
No 4
>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.95 E-value=4.3e+02 Score=17.90 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=13.5
Q ss_pred EEeeeecCCCCCC-CCCCccc
Q psy7646 275 MVEYVLGTSPTSK-DNGLEPR 294 (301)
Q Consensus 275 MVEYVL~~SPt~k-~~~lepr 294 (301)
.|..|.-++|..+ .++|.+-
T Consensus 37 ~V~~v~~g~~A~~~~g~L~~G 57 (106)
T d2cs5a1 37 IVSRVAPGTPADLCVPRLNEG 57 (106)
T ss_dssp EEEEECSSSTTTSSSSCCCTT
T ss_pred EEEEEcCCCcchhccCCCCCC
Confidence 3556778888887 4567654
No 5
>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.66 E-value=3.4e+02 Score=19.00 Aligned_cols=20 Identities=5% Similarity=0.326 Sum_probs=14.5
Q ss_pred EEeeeecCCCCCCCCCCccc
Q psy7646 275 MVEYVLGTSPTSKDNGLEPR 294 (301)
Q Consensus 275 MVEYVL~~SPt~k~~~lepr 294 (301)
.|..|.-++|..+.+-|.+-
T Consensus 60 ~V~~v~~gg~A~~~G~L~~G 79 (130)
T d1i16a_ 60 TINRIFKGAASEQSETVQPG 79 (130)
T ss_dssp EEEEECSSCCCSSSCCCCTT
T ss_pred EEEEECCCChHHhcCCcccC
Confidence 47788889998876546554
No 6
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=4.49 E-value=1.5e+02 Score=18.15 Aligned_cols=18 Identities=22% Similarity=0.446 Sum_probs=12.4
Q ss_pred ccCcccccccccCCCCCCcc
Q psy7646 170 QNGIDNEDKYKYSSGPGGVV 189 (301)
Q Consensus 170 qNGiD~D~K~~~~~~~~~~~ 189 (301)
.||||-+ .+..|||+|-+
T Consensus 11 e~gidl~--~i~GtG~~GRI 28 (39)
T d2cyua1 11 EHNLDAS--AIKGTGVGGRL 28 (39)
T ss_dssp HHTCCGG--GSCCCSSSSCC
T ss_pred HcCCCHH--HCcCCCCCCcE
Confidence 3667665 56778888865
No 7
>d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.39 E-value=3.8e+02 Score=21.64 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=36.6
Q ss_pred CCCccccccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCceeEEEeeeecC
Q psy7646 229 SSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGT 282 (301)
Q Consensus 229 ~~dH~vsqpi~m~~~~rr~G~~~~g~~~~~~vLSPRss~sGGLGVkMVEYVL~~ 282 (301)
..-|-..-|| .+-+-|+||+=|+-+.-+|+ .-||.|-.=.|-||+.
T Consensus 139 k~v~f~KY~i-yvGgNRGRGQvYP~G~kSNN-------NVGGFGQ~e~EiVLQ~ 184 (187)
T d1e2wa1 139 KNVSYLKYPI-YFGGNRGRGQVYPDGKKSNF-------NVGGFGQAETEIVLQN 184 (187)
T ss_dssp TTCCSSEEEE-EEEEEESCCSBCTTSCBCSS-------CCCEEEEEEEEEEECC
T ss_pred CcccceeccE-EEeccccccccCCCCccccC-------ccccccccceeEEecC
Confidence 4557788899 66578899998888766655 4699999999999985
No 8
>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain {Phormidium laminosum [TaxId: 32059]}
Probab=4.34 E-value=3.6e+02 Score=21.83 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=36.6
Q ss_pred CCCccccccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCceeEEEeeeecC
Q psy7646 229 SSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGT 282 (301)
Q Consensus 229 ~~dH~vsqpi~m~~~~rr~G~~~~g~~~~~~vLSPRss~sGGLGVkMVEYVL~~ 282 (301)
..-|-..-|| .+-+-|+||+=|+-+.-+|+ .-||.|-.=.|-||+.
T Consensus 140 k~v~f~KY~i-yvGgNRGRGQvYP~G~kSNN-------NVGGFGQ~d~EiVLQ~ 185 (187)
T d1ci3m1 140 KSVAFGKYSI-HLGANRGRGQIYPTGEKSNN-------NVGGFGQKDTEIVLQS 185 (187)
T ss_dssp TTCCSEEEEE-EEEEEESCCSBCTTSCBCSS-------CCCEEEEEEEEEEECC
T ss_pred CccceeeccE-EEeccccccccCCCCccccC-------cccccCccceEEEecC
Confidence 3457788899 66678899998888766655 4699999999999985
No 9
>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.33 E-value=1.3e+02 Score=20.86 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=13.9
Q ss_pred EeeeecCCCCCCCCCCccccc
Q psy7646 276 VEYVLGTSPTSKDNGLEPRMR 296 (301)
Q Consensus 276 VEYVL~~SPt~k~~~leprmr 296 (301)
|..|.-.+|..+...|.+.-+
T Consensus 45 V~~V~~gs~A~~~G~L~~GD~ 65 (107)
T d1uhpa_ 45 VSKIVDSGPAAKEGGLQIHDR 65 (107)
T ss_dssp EEEECSSSHHHHTTCCCSSCE
T ss_pred EEEECCCCHHHHhCCCcceeE
Confidence 667888888777654665433
No 10
>d1xeqa1 a.16.1.1 (A:15-103) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza B virus [TaxId: 11520]}
Probab=3.95 E-value=43 Score=24.51 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=14.1
Q ss_pred CceeEEEeeeecCCCCCCCCCCcc
Q psy7646 270 GLGVKMVEYVLGTSPTSKDNGLEP 293 (301)
Q Consensus 270 GLGVkMVEYVL~~SPt~k~~~lep 293 (301)
-|||||...+|=--|..-..|+||
T Consensus 65 aigvkm~k~llf~~psagiegfep 88 (89)
T d1xeqa1 65 AIGVKMMKVLLFMDPSAGIEGFEP 88 (89)
T ss_dssp HHHHHHHHHHTTCCCCSSSTTCCC
T ss_pred hhhHhHHhhhheeccccCccCCCC
Confidence 356777666665555544445554
Done!