RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7646
         (301 letters)



>gnl|CDD|222473 pfam13958, ToxN_toxin, Toxin ToxN, type III toxin-antitoxin system.
            ToxN acts as a toxin, it is part of a type III
           toxin-antitoxin system. It acts as a ribosome
           independent endoribonuclease. It interacts with, and is
           inhibited by, the RNA antitoxin, ToxI. Three ToxN
           monomers bind to three ToxI monomers to create a
           trimeric ToxN-ToxI complex.
          Length = 160

 Score = 31.0 bits (71), Expect = 0.35
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 25/88 (28%)

Query: 115 KDNGLEPRMR-GLVLNSDGSDV------KKEKDKAPASPYDV-------KKELVDASGAI 160
           KD G   R   G+VL  +G          KEK K   +  D         K L    G I
Sbjct: 25  KDPGKHKRPYVGIVLKINGFKYFAPLSSPKEKHKKMKNNLDFIKIKEGKNKLL----GVI 80

Query: 161 QTNGMVPVVQN-----GIDNE--DKYKY 181
             N M+PV  +      I+ E  +KYK 
Sbjct: 81  NLNNMIPVPDSELKEIDINKEKDEKYKN 108


>gnl|CDD|202956 pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain. 
          Length = 75

 Score = 28.3 bits (64), Expect = 1.2
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 194 TPGSRQPSPTDDGSELAAVQAAVHHSHQK 222
               + P   DD   +AA+ AA+H    +
Sbjct: 47  EAAPKSPPAEDDPELVAAISAAIHAYRAQ 75


>gnl|CDD|223259 COG0181, HemC, Porphobilinogen deaminase [Coenzyme metabolism].
          Length = 307

 Score = 28.7 bits (65), Expect = 4.2
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 116 DNGLEPRMRGLVLNSDGSDV-KKEKDKAPASPYDVKKEL 153
             G E R+R LV + DGS + K E         ++ KEL
Sbjct: 251 TGGGELRLRALVGSPDGSQIIKAEIRGDAEDAEELGKEL 289


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.308    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0774    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,009,334
Number of extensions: 1400877
Number of successful extensions: 706
Number of sequences better than 10.0: 1
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 11
Length of query: 301
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 205
Effective length of database: 6,679,618
Effective search space: 1369321690
Effective search space used: 1369321690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (26.4 bits)