RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7646
(301 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 2e-10
Identities = 79/397 (19%), Positives = 128/397 (32%), Gaps = 143/397 (36%)
Query: 1 QDYTKFVVGNDDTKQTIAPSAKKLWGVEEGKEDSHKTGGGGILNLNDQMWRDSTWSTSDH 60
Q Y V I SA+ L + D+ K G LN+ + W ++ +T D
Sbjct: 178 QTYHVLV------GDLIKFSAETLSELIRTTLDAEKVFTQG-LNILE--WLENPSNTPDK 228
Query: 61 -------------GVTQGMAMVPSARRPGATFPG---------TDNGAGVLSPR---SSD 95
GV Q V +A+ G T PG T + G+++ +D
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 96 SS----GLGVKMVEYV--LG-----TSPTSKDNGLEPRMRGLVLNSDGSDVKKEKDKAPA 144
S K + + +G P + L P + D + + P
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNT---SLPPSIL--------EDSLENNEGVP- 335
Query: 145 SP----YDVKKELVDASGAI-QTNGMVPV-------VQNGIDN-------ED-------- 177
SP ++ +E V + +TN +P + NG N +
Sbjct: 336 SPMLSISNLTQEQVQD--YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 178 -KYKYSSGPGGVVCYSRTPGS-RQP--------------SP----------TD------- 204
K K SG SR P S R+ S D
Sbjct: 394 RKAKAPSGLD----QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 205 -DGSELAAVQAAVHHSH--QKPARFSDSSDHGVTQGMAMVP----SARRPGAT----F-P 252
+ ++ Q V+ + S S + + +P + + AT F P
Sbjct: 450 FNAKDI---QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 253 GTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDN 289
G +G GVL+ R+ D G GV+++ V GT + D+
Sbjct: 507 GGASGLGVLTHRNKD--GTGVRVI--VAGTLDINPDD 539
>2xdb_A TOXN; abortive infection, phage; HET: A23; 2.55A {Pectobacterium
atrosepticum} PDB: 2xd0_A* 2xdd_A*
Length = 171
Score = 29.9 bits (67), Expect = 0.54
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 17/74 (22%)
Query: 125 GLVLNSDG-------SDVKKEKDKAPASPYDVKKELVDAS-----GAIQTNGMVPVVQN- 171
G+VL G + KK + S K + G I M+P+++
Sbjct: 37 GIVLEIQGHKYLAPLTSPKKWHNNVKESSLSCFKLHENGVPENQLGLINLKFMIPIIEAE 96
Query: 172 ----GIDNEDKYKY 181
+ N Y
Sbjct: 97 VSLLDLGNMPNTPY 110
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 30.3 bits (69), Expect = 0.67
Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 32/121 (26%)
Query: 122 RMRGLVLNSDGSD----VKKEKDKAPASPYD-----VK----KELVDA-SGAIQTNGMVP 167
GL L + D V D + D VK + A A+ + +V
Sbjct: 58 EATGLRLETQSFDEQVKVSASSDPSAVQGADLVLFCVKSTDTQSAALAMKPALAKSALVL 117
Query: 168 VVQNGIDNEDKYK----------------YSSGPGGVVCYSRTPGSRQPSPTDDGSELAA 211
+QNG++N D + +GPG V G PT G+ LAA
Sbjct: 118 SLQNGVENADTLRSLLEQEVAAAVVYVATEMAGPGHVRH--HGRGELVIEPTSHGANLAA 175
Query: 212 V 212
+
Sbjct: 176 I 176
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 30.3 bits (69), Expect = 0.72
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 23/100 (23%)
Query: 122 RMRGLVLNSDGSDVKKEKDKAPASP---------------YDVKKELVDASGAIQTNGMV 166
GL + S D K +P + + ++ +
Sbjct: 40 AGNGLKVFSINGDFTLPHVKGYRAPEEIGPMDLVLVGLKTFANSRYEELIRPLVEEGTQI 99
Query: 167 PVVQNGIDNEDKYKYSSGP----GGVVCYSRTPGSRQPSP 202
+QNG+ NE+ G GGV S + P
Sbjct: 100 LTLQNGLGNEEALATLFGAERIIGGVA----FLCSNRGEP 135
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 0.90
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 68 MVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVL--GTSPTSKDNGLEPRMRG 125
+ + ++ G F D L + + GL + + GTS T ++ E
Sbjct: 1302 LRAAQQQWGNDFYKRDPRIAPLR-GALATYGLTIDDLGVASFHGTS-TKANDKNESATIN 1359
Query: 126 LVLNSDGSDVKKEKDKAPASPYDVKKELVD----ASGAIQTNGMVPVVQNGI-------D 174
++ G + + +K L A+GA NG + ++ +GI D
Sbjct: 1360 EMMKHLG------RSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNAD 1413
Query: 175 NED 177
N D
Sbjct: 1414 NVD 1416
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 27.7 bits (61), Expect = 5.7
Identities = 5/55 (9%), Positives = 18/55 (32%)
Query: 1 QDYTKFVVGNDDTKQTIAPSAKKLWGVEEGKEDSHKTGGGGILNLNDQMWRDSTW 55
++ +G + + K WG++ + + + D + + +
Sbjct: 136 EEEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKF 190
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83,
structural genomics, PSI-2; HET: MSE; 2.15A
{Porphyromonas gingivalis}
Length = 317
Score = 26.8 bits (60), Expect = 9.7
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 36/124 (29%)
Query: 125 GLVLNSDGSDVKKEKDKAPASP---------------YDVKKELVDASGAIQTNGMVPVV 169
GL + + D +P YD+++ + + I N + +
Sbjct: 57 GLRVVTPSRDFLARPTCVTDNPAEVGTVDYILFCTKDYDMERGVAEIRPMIGQNTKILPL 116
Query: 170 QNGIDNEDK---------------YKYSS--GPGGVVCYSRTP----GSRQPSPTDDGSE 208
NG D ++ Y + PG + + GS P TDD
Sbjct: 117 LNGADIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELFYFGSGLPEQTDDEVR 176
Query: 209 LAAV 212
LA +
Sbjct: 177 LAEL 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.129 0.374
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,480,920
Number of extensions: 267113
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 18
Length of query: 301
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 208
Effective length of database: 4,105,140
Effective search space: 853869120
Effective search space used: 853869120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (25.7 bits)