BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7649
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 67.0 bits (162), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+EVY+DGG+R GTDV KA+ LGA+ +F+GR LWGLA G +G VL L ++
Sbjct: 273 IEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAEL 327
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 67.0 bits (162), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+EVY+DGG+R GTDV KA+ LGA+ +F+GR LWGLA G +G VL L ++
Sbjct: 273 IEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAEL 327
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/51 (60%), Positives = 37/51 (72%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
+EV+LDGG+R GTDV KA+ LGAK VFVGR +WGLA G G VL+ L
Sbjct: 286 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEIL 336
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/51 (60%), Positives = 37/51 (72%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
+EV+LDGG+R GTDV KA+ LGAK VFVGR +WGLA G G VL+ L
Sbjct: 308 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEIL 358
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 37/51 (72%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
+EV+LDGG+R GTDV KA+ LGAK VFVGR +WGLA G G VL+ L
Sbjct: 303 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEIL 353
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
pdb|1GYL|B Chain B, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
Length = 369
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
V+LDGG+R GTDVFKA+ LGA VF+GR ++ LA G G +VLQ +
Sbjct: 282 VFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMM 330
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2
Angstroms Resolution
Length = 370
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
V+LDGG+R GTDVFKA+ LGA VF+GR ++ LA G G +VLQ +
Sbjct: 283 VFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMM 331
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With
Bound Active- Site Inhibitors
pdb|1AL8|A Chain A, Three-Dimensional Structure Of Glycolate Oxidase With
Bound Active- Site Inhibitors
Length = 359
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
V+LDGG+R GTDVFKA+ LGA VF+GR ++ LA G G +VLQ +
Sbjct: 282 VFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMM 330
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
V+LDGG+R GTDVFKA+ LGA VF+GR ++ LA G G +VLQ +
Sbjct: 166 VFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMM 214
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+EV++DGG+R GTDV KA+ LGAK V +GR L+ + G NG + ++ L +I
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 458
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+EV++DGG+R GTDV KA+ LGAK V +GR L+ + G NG + ++ L +I
Sbjct: 305 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 359
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+EV++DGG+R GTDV KA+ LGAK V +GR L+ + G NG + ++ L +I
Sbjct: 303 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 357
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+EV++DGG+R GTDV KA+ LGAK V +GR L+ + G NG + ++ L +I
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 458
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+EV++DGG+R GTDV KA+ LGAK V +GR L+ + G NG + ++ L +I
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 458
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+EV++DGG+R GTDV KA+ LGAK V +GR L+ + G NG + ++ L +I
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 458
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+EV++DGG+R GTDV KA+ LGAK V +GR L+ + G NG + ++ L +I
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 458
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+EV++DGG+R GTDV KA+ LGAK V +GR L+ + G NG + ++ L +I
Sbjct: 399 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 453
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
V +D G R G+D+ KA+ LGA+ V +GRA L+GLA G G VL L
Sbjct: 281 VLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLL 329
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
V +D G R G+D+ KA+ LGA+ V +GRA L+GLA G G VL L
Sbjct: 281 VLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLL 329
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQ 49
+ D G+R G V KA+ GA V +GR L+GLA G GA VL
Sbjct: 293 IVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLD 339
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQ 49
+ D G+R G V KA+ GA V +GR L+GLA G GA VL
Sbjct: 287 IVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLD 333
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQ 49
+ D G+R G V KA+ GA V +GR L+GLA G GA VL
Sbjct: 293 IVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLD 339
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIRY D+ KA+ GA+ V VG
Sbjct: 346 DGGIRYSGDIVKALAAGAESVMVG 369
>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIR+ DV KAI GA V +G
Sbjct: 262 DGGIRFSGDVVKAIAAGADSVMIG 285
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 32.3 bits (72), Expect = 0.075, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVG 29
V DGGIRY D+ KAI GA V +G
Sbjct: 331 VIADGGIRYSGDIVKAIAAGADAVMLG 357
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 32.0 bits (71), Expect = 0.084, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIRY D+ KA+ +GA V +G
Sbjct: 252 DGGIRYSGDIGKALAVGASSVMIG 275
>pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
pdb|4FEZ|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
Length = 388
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVG 29
V DGGIR+ D+ KAI GA V VG
Sbjct: 236 VIADGGIRFSGDISKAIAAGASCVMVG 262
>pdb|4FO4|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4FO4|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4HLV|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4HLV|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4IX2|A Chain A, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|B Chain B, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|C Chain C, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|D Chain D, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
Length = 366
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVG 29
V DGGIR+ D+ KAI GA V VG
Sbjct: 214 VIADGGIRFSGDISKAIAAGASCVMVG 240
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIRY D+ KA+ +GA V +G
Sbjct: 213 DGGIRYSGDIGKALAVGASSVMIG 236
>pdb|3SR7|A Chain A, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|B Chain B, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|C Chain C, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|D Chain D, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
Length = 365
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33
+E+ GGIR+ D+ KA+ LGAK V + R L
Sbjct: 279 VEILASGGIRHPLDIIKALVLGAKAVGLSRTML 311
>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae Complexed With Imp And Mycophenolic Acid
Length = 496
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVG 29
V DGGIR+ D+ KAI GA V VG
Sbjct: 337 VIADGGIRFSGDISKAIAAGASCVXVG 363
>pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate
Dehydrogenase From Legionella Pneumophila
Length = 361
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGI+ D+ KA+ GA +V +G
Sbjct: 205 DGGIKTSGDIVKALAFGADFVMIG 228
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS 39
V DGGI+Y D+ KA+ GA V +G + G+A S
Sbjct: 362 VIADGGIKYSGDMVKALAAGAHVVMLG-SMFAGVAES 397
>pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|1YPF|B Chain B, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|2A1Y|A Chain A, Crystal Structure Of Guac-Gmp Complex From Bacillus
Anthracis At 2.26 A Resolution
Length = 336
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIR DV K+I GA V +G
Sbjct: 216 DGGIRTNGDVAKSIRFGATMVMIG 239
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS 39
V DGGI+Y D KA+ GA V +G + G+A S
Sbjct: 362 VIADGGIKYSGDXVKALAAGAHVVXLG-SXFAGVAES 397
>pdb|1OKJ|A Chain A, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|B Chain B, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|C Chain C, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|D Chain D, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
Length = 251
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 8 GIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSL 51
G+R G + + + LGA+ +G + L +A NGA RVL ++
Sbjct: 90 GVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWRKNGATRVLAAI 135
>pdb|3L96|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L96|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L97|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L97|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L98|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L98|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L99|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
pdb|3L99|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
Length = 426
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 26 VFVGRAALWGLAHSGSNGAA-RVLQSLVHK-ILPEAV 60
+ G A+LWG AH G+N AA ++L+ + K +PE V
Sbjct: 252 IAAGIASLWGPAHGGANEAALKMLEEIGKKENIPEFV 288
>pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWB|B Chain B, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWC|A Chain A, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
pdb|1OWC|B Chain B, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
Length = 427
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 26 VFVGRAALWGLAHSGSNGAA-RVLQSLVH-KILPE 58
+ G A+LWG AH G+N AA ++L+ + K +PE
Sbjct: 253 IAAGIASLWGPAHGGANEAALKMLEEISSVKHIPE 287
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
pdb|1K3P|B Chain B, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
Length = 426
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 26 VFVGRAALWGLAHSGSNGAA-RVLQSLVH-KILPE 58
+ G A+LWG AH G+N AA ++L+ + K +PE
Sbjct: 252 IAAGIASLWGPAHGGANEAALKMLEEISSVKHIPE 286
>pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXE|B Chain B, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXG|A Chain A, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
pdb|1NXG|B Chain B, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
Length = 427
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 26 VFVGRAALWGLAHSGSNGAA-RVLQSLVH-KILPE 58
+ G A+LWG AH G+N AA ++L+ + K +PE
Sbjct: 253 IAAGIASLWGPAHGGANEAALKMLEEISSVKHIPE 287
>pdb|2A7R|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
Length = 366
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG 40
DGG DV KA G GA +V +G L G + SG
Sbjct: 237 DGGCSCPGDVAKAFGAGADFVMLG-GMLAGHSESG 270
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVG 29
+ DGGI+Y D+ KA+ G V +G
Sbjct: 339 IIADGGIKYSGDIVKALAAGGNAVXLG 365
>pdb|2BZN|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|E Chain E, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|F Chain F, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|G Chain G, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|H Chain H, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2C6Q|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|E Chain E, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|F Chain F, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|G Chain G, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|H Chain H, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
Length = 351
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG 40
DGG DV KA G GA +V +G L G + SG
Sbjct: 229 DGGCSCPGDVAKAFGAGADFVMLG-GMLAGHSESG 262
>pdb|1P0K|A Chain A, Ipp:dmapp Isomerase Type Ii Apo Structure
pdb|1P0K|B Chain B, Ipp:dmapp Isomerase Type Ii Apo Structure
pdb|1P0N|A Chain A, Ipp:dmapp Isomerase Type Ii, Fmn Complex
pdb|1P0N|B Chain B, Ipp:dmapp Isomerase Type Ii, Fmn Complex
Length = 349
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 7 GGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
GG++ DV KAI LGA + L L SG G +Q ++ ++
Sbjct: 258 GGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEEL 306
>pdb|1N7K|A Chain A, Unique Tetrameric Structure Of Deoxyribose Phosphate
Aldolase From Aeropyrum Pernix
pdb|1N7K|B Chain B, Unique Tetrameric Structure Of Deoxyribose Phosphate
Aldolase From Aeropyrum Pernix
Length = 234
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 13/50 (26%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQS 50
M V GGIR G D A+G GA + G++ A +VL+S
Sbjct: 193 MGVKASGGIRSGIDAVLAVGAGADII-------------GTSSAVKVLES 229
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRAAL 33
DGG++ G D+ A LGA+ +G A+L
Sbjct: 1070 DGGLKTGRDIVIAAMLGAEEFGIGTASL 1097
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRAAL 33
DGG++ G D+ A LGA+ +G A+L
Sbjct: 1070 DGGLKTGRDIVIAAMLGAEEFGIGTASL 1097
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGR 30
DGGI Y + A+ +GA ++ +GR
Sbjct: 358 DGGIVYDYHMTLALAMGADFIMLGR 382
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGR 30
DGGI Y + A+ +GA ++ +GR
Sbjct: 358 DGGIVYDYHMTLALAMGADFIMLGR 382
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
Tular
pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
Tular
Length = 427
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 26 VFVGRAALWGLAHSGSNGA 44
+ G ALWG AH G+N A
Sbjct: 257 IIAGITALWGPAHGGANEA 275
>pdb|3ECQ|A Chain A, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
pdb|3ECQ|B Chain B, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
Length = 1531
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 14 DVFKAIGLGAKYVFVGRAALWGLAHSGSNGA 44
D+ K +G G +++V +WG SG NGA
Sbjct: 713 DLKKKLGDGLDFIYVD---VWGNGQSGDNGA 740
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 7 GGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARV 47
GG+R+ +V A + + + +L GL + G+ GA RV
Sbjct: 70 GGVRFHPEVTLADDVALAILMTLKNSLAGLPYGGAKGAVRV 110
>pdb|1PVN|A Chain A, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|B Chain B, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|C Chain C, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|D Chain D, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
Length = 376
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGR 30
DGGI Y + A+ +GA ++ +GR
Sbjct: 231 DGGIVYDYHMTLALAMGADFIMLGR 255
>pdb|1LRT|A Chain A, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|B Chain B, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|C Chain C, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|D Chain D, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
Length = 376
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGR 30
DGGI Y + A+ +GA ++ +GR
Sbjct: 231 DGGIVYDYHMTLALAMGADFIMLGR 255
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 11 YGTDVFKAIGLGA---KYVFVGRAA-LWGLAHSGSNGAARVLQSLVHKILPEAVADKVHN 66
+G +F+AIGLGA +Y F G + + GL + G V + PE +A K+ N
Sbjct: 727 HGAQIFEAIGLGAELVEYAFAGTTSRVGGLTIADVAGEVMVFHGMA---FPE-MAKKLEN 782
>pdb|2BLE|A Chain A, Structure Of Human Guanosine Monophosphate Reductase Gmpr1
In Complex With Gmp
pdb|2BWG|A Chain A, Structure Of Human Guanosine Monophosphate Reductase Gmpr1
In Complex With Gmp
pdb|2BWG|B Chain B, Structure Of Human Guanosine Monophosphate Reductase Gmpr1
In Complex With Gmp
pdb|2BWG|C Chain C, Structure Of Human Guanosine Monophosphate Reductase Gmpr1
In Complex With Gmp
pdb|2BWG|D Chain D, Structure Of Human Guanosine Monophosphate Reductase Gmpr1
In Complex With Gmp
Length = 367
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGG DV KA G GA +V +G
Sbjct: 241 DGGCTCPGDVAKAFGAGADFVMLG 264
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIR+ D+ KA+ GA V +G
Sbjct: 358 DGGIRFSGDLAKAMVAGAYCVMMG 381
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIR+ D+ KA+ GA V +G
Sbjct: 338 DGGIRFSGDLAKAMVAGAYCVMMG 361
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus
Length = 432
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 26 VFVGRAALWGLAHSGSNGA 44
+ G A+LWG AH G+N A
Sbjct: 256 IAAGIASLWGPAHGGANEA 274
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
Length = 436
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 29 GRAALWGLAHSGSNGA 44
G AALWG AH G+N A
Sbjct: 263 GIAALWGPAHGGANEA 278
>pdb|2ZRU|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRV|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRW|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRX|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRY|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRZ|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|3B03|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B04|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B05|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B06|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3VKJ|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
Length = 368
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 7 GGIRYGTDVFKAIGLGA 23
GGIR G D KAI LGA
Sbjct: 274 GGIRSGLDAAKAIALGA 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,612,633
Number of Sequences: 62578
Number of extensions: 82504
Number of successful extensions: 232
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 67
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)