Query psy7649
Match_columns 100
No_of_seqs 165 out of 1240
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 23:47:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1304 idi Isopentenyl diphos 99.9 5.9E-22 1.3E-26 156.1 7.5 75 1-75 274-348 (360)
2 KOG0538|consensus 99.8 3.8E-21 8.3E-26 149.1 3.8 73 1-73 279-351 (363)
3 PF01070 FMN_dh: FMN-dependent 99.8 1.3E-20 2.8E-25 148.1 6.2 72 1-72 281-352 (356)
4 PLN02493 probable peroxisomal 99.8 5.5E-20 1.2E-24 145.3 8.1 78 1-78 280-357 (367)
5 PRK11197 lldD L-lactate dehydr 99.8 5.2E-20 1.1E-24 146.0 7.9 74 1-74 301-374 (381)
6 PLN02979 glycolate oxidase 99.8 8.3E-20 1.8E-24 144.2 8.5 75 1-75 279-353 (366)
7 TIGR02708 L_lactate_ox L-lacta 99.8 6.8E-20 1.5E-24 144.8 6.8 75 1-75 284-358 (367)
8 cd04736 MDH_FMN Mandelate dehy 99.8 9.8E-20 2.1E-24 143.7 7.5 71 1-71 290-360 (361)
9 cd03332 LMO_FMN L-Lactate 2-mo 99.8 1.4E-19 3.1E-24 143.6 7.6 72 1-72 309-380 (383)
10 cd02922 FCB2_FMN Flavocytochro 99.8 7.6E-19 1.6E-23 137.7 7.5 71 1-71 272-342 (344)
11 PLN02535 glycolate oxidase 99.8 1.4E-18 3E-23 137.3 7.7 73 1-73 279-351 (364)
12 PRK05437 isopentenyl pyrophosp 99.7 5.1E-18 1.1E-22 133.0 9.2 85 1-85 262-352 (352)
13 cd04737 LOX_like_FMN L-Lactate 99.7 1.5E-18 3.2E-23 136.4 6.0 73 1-73 277-349 (351)
14 cd02811 IDI-2_FMN Isopentenyl- 99.7 3.2E-17 7E-22 127.1 7.3 70 1-71 256-325 (326)
15 cd02809 alpha_hydroxyacid_oxid 99.7 5.7E-17 1.2E-21 124.0 7.7 71 1-71 228-298 (299)
16 TIGR02151 IPP_isom_2 isopenten 99.7 1.3E-16 2.7E-21 124.1 7.5 74 1-74 255-328 (333)
17 cd02808 GltS_FMN Glutamate syn 99.7 1.8E-16 4E-21 125.7 7.1 86 1-86 286-380 (392)
18 PF01645 Glu_synthase: Conserv 99.6 4.1E-17 8.8E-22 129.1 1.5 85 1-85 275-368 (368)
19 COG0069 GltB Glutamate synthas 99.6 3.8E-16 8.1E-21 127.0 3.0 93 1-93 375-476 (485)
20 PRK11750 gltB glutamate syntha 99.4 5.4E-14 1.2E-18 125.1 3.2 89 1-90 1068-1165(1485)
21 PRK05458 guanosine 5'-monophos 99.3 9.4E-13 2E-17 103.0 4.3 74 1-74 202-312 (326)
22 PRK08649 inosine 5-monophospha 99.3 3.9E-12 8.4E-17 100.8 3.9 75 1-75 257-365 (368)
23 TIGR01304 IMP_DH_rel_2 IMP deh 99.2 3.4E-11 7.4E-16 95.5 4.8 75 1-75 256-367 (369)
24 TIGR01306 GMP_reduct_2 guanosi 99.1 7.2E-11 1.6E-15 92.3 3.3 74 1-74 199-309 (321)
25 PRK07107 inosine 5-monophospha 99.1 1.7E-10 3.6E-15 94.5 4.8 72 1-72 353-471 (502)
26 TIGR01305 GMP_reduct_1 guanosi 99.0 2.7E-10 5.8E-15 89.7 3.9 72 1-72 213-328 (343)
27 PRK05567 inosine 5'-monophosph 99.0 3.8E-10 8.3E-15 91.7 4.0 72 1-72 332-454 (486)
28 PF00478 IMPDH: IMP dehydrogen 99.0 2.8E-10 6E-15 90.0 3.0 74 1-74 212-336 (352)
29 PTZ00314 inosine-5'-monophosph 99.0 7.5E-10 1.6E-14 90.5 4.7 72 1-72 345-466 (495)
30 PRK05096 guanosine 5'-monophos 98.9 4.7E-10 1E-14 88.4 3.2 72 1-72 214-329 (346)
31 PRK06843 inosine 5-monophospha 98.9 6.6E-10 1.4E-14 89.2 3.8 72 1-72 257-380 (404)
32 TIGR01303 IMP_DH_rel_1 IMP deh 98.9 1.3E-09 2.8E-14 88.8 4.6 72 1-72 329-455 (475)
33 cd00381 IMPDH IMPDH: The catal 98.9 1.4E-09 2.9E-14 84.7 3.9 73 1-73 198-319 (325)
34 PRK07565 dihydroorotate dehydr 98.9 5.2E-09 1.1E-13 81.2 6.4 63 1-71 240-302 (334)
35 PLN02274 inosine-5'-monophosph 98.8 7.7E-09 1.7E-13 84.9 5.0 73 1-73 352-473 (505)
36 PRK07807 inosine 5-monophospha 98.7 1.7E-08 3.6E-13 82.5 4.5 36 1-36 331-366 (479)
37 TIGR01302 IMP_dehydrog inosine 98.6 1.1E-08 2.4E-13 82.5 1.6 39 1-39 328-366 (450)
38 cd04739 DHOD_like Dihydroorota 98.6 8.1E-08 1.8E-12 74.6 5.9 63 1-71 238-300 (325)
39 TIGR01037 pyrD_sub1_fam dihydr 98.5 3.5E-07 7.5E-12 69.6 6.2 62 1-71 235-296 (300)
40 PLN02826 dihydroorotate dehydr 98.5 4.9E-07 1.1E-11 72.7 6.8 63 1-71 342-404 (409)
41 COG2070 Dioxygenases related t 98.4 1.8E-07 3.8E-12 73.5 3.8 48 1-48 185-232 (336)
42 cd04740 DHOD_1B_like Dihydroor 98.4 6.3E-07 1.4E-11 68.0 5.4 62 1-71 232-293 (296)
43 PRK07259 dihydroorotate dehydr 98.4 8.1E-07 1.7E-11 67.7 5.7 62 1-71 235-296 (301)
44 PRK02506 dihydroorotate dehydr 98.3 1.7E-06 3.8E-11 66.9 7.2 63 1-71 242-304 (310)
45 PF03060 NMO: Nitronate monoox 98.3 3.8E-07 8.3E-12 70.9 2.9 49 1-49 191-239 (330)
46 KOG0399|consensus 98.3 4.3E-07 9.4E-12 80.9 2.4 87 2-90 1171-1266(2142)
47 TIGR03151 enACPred_II putative 98.2 8.2E-07 1.8E-11 68.7 3.4 48 1-48 162-209 (307)
48 KOG2550|consensus 98.1 1.1E-06 2.3E-11 71.4 1.0 33 1-33 355-387 (503)
49 cd04742 NPD_FabD 2-Nitropropan 98.1 2.6E-06 5.6E-11 68.9 3.1 48 1-48 220-267 (418)
50 TIGR02814 pfaD_fam PfaD family 98.1 3.1E-06 6.8E-11 68.9 3.2 48 1-48 225-272 (444)
51 PRK05286 dihydroorotate dehydr 97.9 3.1E-05 6.7E-10 60.7 6.6 34 1-34 290-323 (344)
52 PF01180 DHO_dh: Dihydroorotat 97.9 1.3E-05 2.9E-10 61.0 4.2 34 1-34 245-278 (295)
53 cd02810 DHOD_DHPD_FMN Dihydroo 97.9 1.1E-05 2.5E-10 60.8 3.6 34 1-34 244-277 (289)
54 cd04730 NPD_like 2-Nitropropan 97.8 1.1E-05 2.5E-10 58.8 2.6 49 1-49 157-205 (236)
55 PRK08318 dihydropyrimidine deh 97.8 3.1E-05 6.6E-10 61.8 4.8 63 1-71 254-316 (420)
56 cd04738 DHOD_2_like Dihydrooro 97.8 2.5E-05 5.4E-10 60.7 4.0 34 1-34 281-314 (327)
57 PLN02495 oxidoreductase, actin 97.8 3.1E-05 6.8E-10 62.0 4.6 63 1-71 271-333 (385)
58 cd02940 DHPD_FMN Dihydropyrimi 97.8 1.1E-05 2.4E-10 61.8 1.9 34 1-34 253-286 (299)
59 PRK13125 trpA tryptophan synth 97.7 8E-05 1.7E-09 55.6 6.0 52 2-53 187-238 (244)
60 cd04741 DHOD_1A_like Dihydroor 97.7 5.5E-05 1.2E-09 58.1 4.9 34 1-34 244-277 (294)
61 PRK01130 N-acetylmannosamine-6 97.7 5.6E-05 1.2E-09 55.2 4.0 34 1-34 174-207 (221)
62 PRK00208 thiG thiazole synthas 97.6 5.9E-05 1.3E-09 57.5 3.7 44 1-47 176-219 (250)
63 TIGR00262 trpA tryptophan synt 97.6 0.00015 3.2E-09 55.0 5.7 38 1-38 199-236 (256)
64 cd04728 ThiG Thiazole synthase 97.6 3.9E-05 8.4E-10 58.5 2.5 34 1-34 176-209 (248)
65 TIGR01036 pyrD_sub2 dihydrooro 97.6 8.5E-05 1.8E-09 58.2 4.1 34 1-34 289-322 (335)
66 cd02801 DUS_like_FMN Dihydrour 97.6 6.1E-05 1.3E-09 54.6 2.9 34 1-34 184-218 (231)
67 COG0167 PyrD Dihydroorotate de 97.5 0.00016 3.5E-09 56.6 4.8 63 1-71 242-304 (310)
68 cd04729 NanE N-acetylmannosami 97.4 0.0001 2.2E-09 53.8 2.3 34 1-34 178-211 (219)
69 TIGR00736 nifR3_rel_arch TIM-b 97.4 0.00012 2.6E-09 55.1 2.3 34 1-34 192-225 (231)
70 cd04743 NPD_PKS 2-Nitropropane 97.3 0.00018 3.9E-09 56.5 3.1 38 1-38 166-211 (320)
71 TIGR00734 hisAF_rel hisA/hisF 97.3 0.00018 3.8E-09 53.3 2.8 33 1-33 185-217 (221)
72 PRK00748 1-(5-phosphoribosyl)- 97.3 0.00017 3.7E-09 52.6 2.6 80 1-85 75-161 (233)
73 cd04731 HisF The cyclase subun 97.3 0.00023 4.9E-09 52.6 3.1 35 1-35 194-229 (243)
74 PRK13111 trpA tryptophan synth 97.3 0.00066 1.4E-08 51.7 5.6 52 1-53 201-254 (258)
75 TIGR00007 phosphoribosylformim 97.3 0.0002 4.3E-09 52.4 2.6 34 1-34 190-223 (230)
76 cd04732 HisA HisA. Phosphorib 97.2 0.00026 5.5E-09 51.6 2.8 34 1-34 191-224 (234)
77 PRK14024 phosphoribosyl isomer 97.2 0.0004 8.8E-09 51.8 3.7 79 1-85 76-161 (241)
78 TIGR00737 nifR3_yhdG putative 97.1 0.00031 6.8E-09 54.1 2.6 34 1-34 193-227 (319)
79 CHL00200 trpA tryptophan synth 97.1 0.0015 3.2E-08 49.9 6.2 56 1-56 203-258 (263)
80 PRK01033 imidazole glycerol ph 97.1 0.00015 3.2E-09 54.7 0.8 35 1-35 197-232 (258)
81 CHL00162 thiG thiamin biosynth 97.1 0.00017 3.7E-09 55.4 0.8 34 1-34 190-223 (267)
82 PF05690 ThiG: Thiazole biosyn 97.1 0.00029 6.4E-09 53.6 2.0 33 1-33 176-208 (247)
83 PRK00748 1-(5-phosphoribosyl)- 97.1 0.00041 8.8E-09 50.6 2.7 35 1-35 191-226 (233)
84 TIGR00735 hisF imidazoleglycer 97.1 0.00041 8.8E-09 52.0 2.7 34 1-34 75-108 (254)
85 cd04735 OYE_like_4_FMN Old yel 97.1 0.00066 1.4E-08 53.3 4.0 34 1-34 285-318 (353)
86 cd04723 HisA_HisF Phosphoribos 97.1 0.00045 9.8E-09 51.3 2.7 34 1-34 190-223 (233)
87 PRK11840 bifunctional sulfur c 97.0 0.00021 4.7E-09 56.3 0.9 33 1-33 250-282 (326)
88 PRK14024 phosphoribosyl isomer 97.0 0.00048 1E-08 51.4 2.6 35 1-35 191-228 (241)
89 cd02911 arch_FMN Archeal FMN-b 97.0 0.00033 7.1E-09 52.4 1.6 31 1-31 192-222 (233)
90 PRK04128 1-(5-phosphoribosyl)- 97.0 0.00046 1E-08 51.4 2.4 34 1-34 183-216 (228)
91 PRK13587 1-(5-phosphoribosyl)- 97.0 0.00056 1.2E-08 51.1 2.8 34 1-34 193-226 (234)
92 PF04131 NanE: Putative N-acet 97.0 0.0006 1.3E-08 50.3 2.8 34 1-34 145-178 (192)
93 PRK11815 tRNA-dihydrouridine s 97.0 0.00058 1.3E-08 53.3 2.8 33 1-34 206-238 (333)
94 PRK02083 imidazole glycerol ph 97.0 0.00059 1.3E-08 50.9 2.7 34 1-34 75-108 (253)
95 cd00331 IGPS Indole-3-glycerol 96.9 0.00067 1.5E-08 49.3 2.6 34 1-34 173-206 (217)
96 cd04731 HisF The cyclase subun 96.9 0.0012 2.7E-08 48.7 4.0 33 1-33 72-104 (243)
97 PRK10415 tRNA-dihydrouridine s 96.9 0.00066 1.4E-08 52.8 2.7 33 1-33 195-228 (321)
98 PRK13585 1-(5-phosphoribosyl)- 96.9 0.00073 1.6E-08 49.7 2.7 34 1-34 194-227 (241)
99 cd02803 OYE_like_FMN_family Ol 96.9 0.00081 1.7E-08 51.5 3.0 34 1-34 282-316 (327)
100 TIGR00735 hisF imidazoleglycer 96.9 0.00079 1.7E-08 50.5 2.9 34 1-34 200-234 (254)
101 TIGR03572 WbuZ glycosyl amidat 96.9 0.00065 1.4E-08 49.8 2.4 32 1-32 198-230 (232)
102 cd04724 Tryptophan_synthase_al 96.9 0.0021 4.6E-08 48.0 4.9 53 1-54 188-240 (242)
103 PLN02591 tryptophan synthase 96.8 0.0032 6.9E-08 47.8 5.8 55 1-55 190-245 (250)
104 PF01884 PcrB: PcrB family; I 96.8 0.00058 1.3E-08 51.5 1.5 33 1-33 183-215 (230)
105 TIGR00742 yjbN tRNA dihydrouri 96.8 0.00095 2.1E-08 52.1 2.6 33 1-34 196-228 (318)
106 KOG1436|consensus 96.7 0.0054 1.2E-07 48.9 6.2 63 1-71 332-394 (398)
107 PRK02083 imidazole glycerol ph 96.6 0.0015 3.2E-08 48.7 2.7 34 1-34 198-232 (253)
108 cd04732 HisA HisA. Phosphorib 96.6 0.0013 2.8E-08 48.0 2.3 33 1-33 74-106 (234)
109 cd02931 ER_like_FMN Enoate red 96.5 0.0019 4.2E-08 51.3 2.9 33 1-33 306-339 (382)
110 PRK04128 1-(5-phosphoribosyl)- 96.5 0.0014 3E-08 48.8 1.9 33 1-33 74-106 (228)
111 PF00977 His_biosynth: Histidi 96.5 0.002 4.2E-08 47.8 2.7 33 1-33 192-224 (229)
112 cd04734 OYE_like_3_FMN Old yel 96.5 0.0023 4.9E-08 50.2 3.0 33 1-33 286-319 (343)
113 PRK13523 NADPH dehydrogenase N 96.5 0.0035 7.6E-08 49.2 3.9 33 1-33 276-309 (337)
114 PRK04180 pyridoxal biosynthesi 96.5 0.0047 1E-07 48.2 4.5 34 1-34 204-239 (293)
115 PRK00043 thiE thiamine-phospha 96.4 0.0034 7.4E-08 44.8 3.4 32 1-33 161-192 (212)
116 COG1902 NemA NADH:flavin oxido 96.4 0.0025 5.4E-08 50.8 2.7 33 1-33 289-322 (363)
117 cd04733 OYE_like_2_FMN Old yel 96.4 0.0029 6.3E-08 49.2 2.9 33 1-33 293-326 (338)
118 cd02932 OYE_YqiM_FMN Old yello 96.3 0.0039 8.4E-08 48.4 3.4 34 1-34 291-325 (336)
119 cd02929 TMADH_HD_FMN Trimethyl 96.3 0.0033 7.2E-08 49.8 3.0 33 1-33 290-323 (370)
120 PRK07695 transcriptional regul 96.2 0.0073 1.6E-07 43.5 4.2 33 1-34 150-182 (201)
121 PRK13587 1-(5-phosphoribosyl)- 96.2 0.0065 1.4E-07 45.4 4.0 33 1-33 77-109 (234)
122 PRK13585 1-(5-phosphoribosyl)- 96.2 0.004 8.6E-08 45.8 2.7 33 1-33 77-109 (241)
123 cd02812 PcrB_like PcrB_like pr 96.2 0.0036 7.7E-08 46.9 2.4 34 1-34 176-209 (219)
124 PRK04169 geranylgeranylglycery 96.1 0.0043 9.3E-08 46.8 2.6 32 2-33 186-217 (232)
125 TIGR00343 pyridoxal 5'-phospha 96.1 0.0082 1.8E-07 46.7 4.2 34 1-34 198-233 (287)
126 PRK14114 1-(5-phosphoribosyl)- 96.1 0.0039 8.5E-08 46.9 2.4 33 1-33 189-227 (241)
127 COG2022 ThiG Uncharacterized e 96.1 0.0048 1E-07 47.2 2.7 35 1-35 183-217 (262)
128 PRK10550 tRNA-dihydrouridine s 96.1 0.0043 9.3E-08 48.3 2.4 34 1-34 195-229 (312)
129 cd04727 pdxS PdxS is a subunit 96.0 0.011 2.3E-07 46.0 4.4 34 1-34 195-230 (283)
130 TIGR00007 phosphoribosylformim 96.0 0.012 2.5E-07 43.0 4.4 34 1-34 73-106 (230)
131 PF00977 His_biosynth: Histidi 96.0 0.0059 1.3E-07 45.2 2.9 33 1-33 74-106 (229)
132 cd02930 DCR_FMN 2,4-dienoyl-Co 96.0 0.0085 1.8E-07 46.9 3.9 33 1-33 277-310 (353)
133 PF00724 Oxidored_FMN: NADH:fl 96.0 0.0051 1.1E-07 48.0 2.6 33 1-33 292-325 (341)
134 PRK04302 triosephosphate isome 96.0 0.0041 8.8E-08 45.8 1.9 35 1-35 174-208 (223)
135 TIGR01768 GGGP-family geranylg 96.0 0.0053 1.2E-07 46.1 2.5 34 1-34 180-213 (223)
136 PLN02334 ribulose-phosphate 3- 95.9 0.01 2.2E-07 43.7 3.8 53 1-60 175-227 (229)
137 cd02933 OYE_like_FMN Old yello 95.9 0.0061 1.3E-07 47.8 2.6 32 1-33 286-318 (338)
138 PRK13586 1-(5-phosphoribosyl)- 95.9 0.0057 1.2E-07 45.8 2.3 32 2-33 191-222 (232)
139 TIGR01919 hisA-trpF 1-(5-phosp 95.8 0.0068 1.5E-07 45.6 2.6 33 1-33 194-229 (243)
140 PRK01033 imidazole glycerol ph 95.5 0.025 5.5E-07 42.6 4.5 33 1-33 75-107 (258)
141 PRK00278 trpC indole-3-glycero 95.4 0.011 2.4E-07 44.8 2.4 34 2-35 213-246 (260)
142 cd00564 TMP_TenI Thiamine mono 95.4 0.013 2.7E-07 40.8 2.5 33 1-34 151-183 (196)
143 PRK00507 deoxyribose-phosphate 95.4 0.013 2.8E-07 43.7 2.6 32 1-32 180-211 (221)
144 TIGR03572 WbuZ glycosyl amidat 95.4 0.014 3E-07 42.8 2.6 46 1-51 75-120 (232)
145 cd04726 KGPDC_HPS 3-Keto-L-gul 95.3 0.0098 2.1E-07 42.3 1.8 32 1-33 159-190 (202)
146 TIGR01919 hisA-trpF 1-(5-phosp 95.3 0.012 2.7E-07 44.2 2.2 33 1-33 75-107 (243)
147 COG0042 tRNA-dihydrouridine sy 95.2 0.02 4.2E-07 44.9 3.2 34 1-34 199-233 (323)
148 COG0107 HisF Imidazoleglycerol 95.1 0.025 5.5E-07 43.2 3.5 35 1-35 200-235 (256)
149 cd04723 HisA_HisF Phosphoribos 95.1 0.014 3E-07 43.4 2.1 33 1-33 79-111 (233)
150 PRK13586 1-(5-phosphoribosyl)- 95.1 0.034 7.3E-07 41.6 4.0 32 2-33 75-106 (232)
151 PRK08255 salicylyl-CoA 5-hydro 95.0 0.022 4.7E-07 48.9 3.1 33 1-33 688-721 (765)
152 cd04747 OYE_like_5_FMN Old yel 95.0 0.026 5.7E-07 44.8 3.4 33 1-33 281-332 (361)
153 PRK14114 1-(5-phosphoribosyl)- 94.8 0.02 4.2E-07 43.1 2.2 33 1-33 74-106 (241)
154 PLN02411 12-oxophytodienoate r 94.8 0.023 5.1E-07 45.4 2.7 32 1-33 314-346 (391)
155 PRK10605 N-ethylmaleimide redu 94.7 0.026 5.6E-07 44.7 2.6 32 1-33 293-325 (362)
156 TIGR00693 thiE thiamine-phosph 94.6 0.031 6.7E-07 39.7 2.7 33 1-34 153-185 (196)
157 COG0106 HisA Phosphoribosylfor 94.6 0.027 5.9E-07 42.9 2.5 34 1-34 192-226 (241)
158 TIGR02129 hisA_euk phosphoribo 94.6 0.022 4.8E-07 43.6 2.0 33 1-34 77-109 (253)
159 PF01207 Dus: Dihydrouridine s 94.4 0.016 3.4E-07 44.9 0.7 34 1-34 184-218 (309)
160 PRK07226 fructose-bisphosphate 94.1 0.083 1.8E-06 39.9 4.1 34 1-34 197-236 (267)
161 cd00429 RPE Ribulose-5-phospha 94.0 0.042 9E-07 39.0 2.2 33 1-34 167-199 (211)
162 TIGR01163 rpe ribulose-phospha 93.8 0.056 1.2E-06 38.4 2.6 32 2-34 167-198 (210)
163 COG0159 TrpA Tryptophan syntha 93.8 0.19 4.1E-06 38.8 5.6 54 1-55 206-259 (265)
164 PRK09140 2-dehydro-3-deoxy-6-p 93.8 0.14 3.1E-06 37.6 4.8 33 1-34 152-184 (206)
165 PRK08883 ribulose-phosphate 3- 93.7 0.073 1.6E-06 39.6 3.2 48 1-55 168-215 (220)
166 PRK07028 bifunctional hexulose 93.6 0.082 1.8E-06 42.4 3.5 73 1-81 163-235 (430)
167 COG0107 HisF Imidazoleglycerol 93.6 0.06 1.3E-06 41.2 2.6 34 1-34 75-108 (256)
168 COG3010 NanE Putative N-acetyl 93.4 0.049 1.1E-06 41.1 1.8 32 1-32 181-212 (229)
169 cd00452 KDPG_aldolase KDPG and 93.4 0.061 1.3E-06 38.5 2.3 32 1-33 144-175 (190)
170 PF00218 IGPS: Indole-3-glycer 93.4 0.052 1.1E-06 41.4 1.9 34 2-35 211-244 (254)
171 PRK06552 keto-hydroxyglutarate 93.3 0.17 3.8E-06 37.4 4.7 52 1-53 156-207 (213)
172 PF00290 Trp_syntA: Tryptophan 93.2 0.27 5.9E-06 37.6 5.7 49 1-51 199-247 (259)
173 COG0106 HisA Phosphoribosylfor 93.1 0.074 1.6E-06 40.5 2.4 80 1-85 76-162 (241)
174 PRK05581 ribulose-phosphate 3- 93.1 0.11 2.5E-06 37.2 3.3 31 3-34 173-203 (220)
175 TIGR02129 hisA_euk phosphoribo 93.0 0.084 1.8E-06 40.4 2.6 33 1-33 202-236 (253)
176 TIGR00126 deoC deoxyribose-pho 92.9 0.1 2.3E-06 38.7 3.0 30 1-30 176-205 (211)
177 PLN02446 (5-phosphoribosyl)-5- 92.9 0.061 1.3E-06 41.4 1.7 32 1-32 208-241 (262)
178 TIGR03128 RuMP_HxlA 3-hexulose 92.9 0.076 1.6E-06 38.0 2.1 32 2-34 160-191 (206)
179 cd00958 DhnA Class I fructose- 92.9 0.16 3.6E-06 37.1 3.9 34 1-34 180-219 (235)
180 PRK05848 nicotinate-nucleotide 92.7 0.089 1.9E-06 40.5 2.4 31 2-33 231-261 (273)
181 PRK11750 gltB glutamate syntha 92.4 0.72 1.6E-05 43.0 8.0 26 2-27 651-677 (1485)
182 PRK13307 bifunctional formalde 92.1 0.14 3E-06 41.4 2.9 32 1-33 331-362 (391)
183 COG1646 Predicted phosphate-bi 92.1 0.087 1.9E-06 40.1 1.6 31 2-32 193-223 (240)
184 PF04309 G3P_antiterm: Glycero 92.0 0.062 1.4E-06 39.0 0.8 34 1-34 141-174 (175)
185 TIGR01949 AroFGH_arch predicte 91.8 0.29 6.3E-06 36.7 4.2 34 1-34 193-232 (258)
186 PLN02617 imidazole glycerol ph 91.5 0.09 1.9E-06 44.0 1.3 34 1-34 483-517 (538)
187 KOG2335|consensus 91.3 0.14 3E-06 41.1 2.1 34 1-34 204-238 (358)
188 PLN02460 indole-3-glycerol-pho 91.2 0.18 3.9E-06 40.1 2.6 33 3-35 291-323 (338)
189 PRK07455 keto-hydroxyglutarate 91.0 0.15 3.2E-06 36.9 1.8 32 1-33 153-184 (187)
190 PLN02446 (5-phosphoribosyl)-5- 90.9 0.16 3.5E-06 39.0 2.1 33 1-34 84-116 (262)
191 COG0214 SNZ1 Pyridoxine biosyn 90.9 0.13 2.9E-06 39.6 1.6 33 3-35 211-243 (296)
192 cd00956 Transaldolase_FSA Tran 90.6 0.65 1.4E-05 34.2 5.0 46 4-49 160-207 (211)
193 TIGR00734 hisAF_rel hisA/hisF 90.6 0.19 4.1E-06 37.2 2.1 33 1-33 78-112 (221)
194 KOG1606|consensus 90.5 0.43 9.2E-06 36.5 3.9 31 4-34 213-243 (296)
195 PRK13802 bifunctional indole-3 90.0 0.19 4.2E-06 43.3 2.0 34 2-35 213-246 (695)
196 PRK03903 transaldolase; Provis 89.8 3 6.4E-05 32.4 8.1 71 2-72 179-268 (274)
197 cd00405 PRAI Phosphoribosylant 89.6 0.24 5.3E-06 35.6 2.0 33 1-34 153-186 (203)
198 PRK13957 indole-3-glycerol-pho 89.4 0.25 5.5E-06 37.6 2.0 33 2-35 204-236 (247)
199 PRK02615 thiamine-phosphate py 89.3 0.55 1.2E-05 37.4 3.9 33 1-34 295-327 (347)
200 COG0134 TrpC Indole-3-glycerol 89.0 0.41 8.9E-06 36.7 2.9 34 2-35 209-242 (254)
201 PRK06512 thiamine-phosphate py 88.9 0.76 1.6E-05 34.1 4.2 33 1-34 165-197 (221)
202 PRK12376 putative translaldola 88.9 1 2.2E-05 34.1 5.0 49 4-52 174-229 (236)
203 PRK13813 orotidine 5'-phosphat 87.8 0.27 5.9E-06 35.5 1.2 48 3-56 165-213 (215)
204 cd01573 modD_like ModD; Quinol 87.3 0.48 1E-05 36.3 2.4 31 1-32 231-261 (272)
205 PTZ00170 D-ribulose-5-phosphat 86.9 1.1 2.4E-05 33.2 4.0 48 2-56 175-222 (228)
206 TIGR01304 IMP_DH_rel_2 IMP deh 86.6 0.39 8.5E-06 38.5 1.6 28 1-29 189-216 (369)
207 cd04737 LOX_like_FMN L-Lactate 86.4 2.2 4.8E-05 34.0 5.7 29 62-90 318-346 (351)
208 PF01791 DeoC: DeoC/LacD famil 86.2 0.58 1.3E-05 34.4 2.2 30 3-32 196-233 (236)
209 COG0274 DeoC Deoxyribose-phosp 85.6 0.69 1.5E-05 35.1 2.4 31 2-32 185-215 (228)
210 PRK08649 inosine 5-monophospha 85.2 0.52 1.1E-05 37.7 1.6 29 1-30 188-216 (368)
211 PRK05742 nicotinate-nucleotide 85.1 0.71 1.5E-05 35.6 2.3 32 1-33 234-265 (277)
212 PRK09427 bifunctional indole-3 85.1 0.56 1.2E-05 38.6 1.8 33 2-35 212-244 (454)
213 PLN02617 imidazole glycerol ph 85.0 0.73 1.6E-05 38.7 2.5 34 1-34 315-359 (538)
214 PRK12655 fructose-6-phosphate 84.5 2.7 5.9E-05 31.4 5.2 49 4-52 162-212 (220)
215 TIGR00875 fsa_talC_mipB fructo 84.1 3.2 6.9E-05 30.8 5.3 49 4-52 160-210 (213)
216 cd01568 QPRTase_NadC Quinolina 83.8 0.97 2.1E-05 34.4 2.5 31 1-32 228-258 (269)
217 TIGR00078 nadC nicotinate-nucl 83.7 0.99 2.1E-05 34.5 2.5 31 1-32 223-253 (265)
218 PRK12653 fructose-6-phosphate 83.6 3.1 6.8E-05 31.0 5.1 49 4-52 162-212 (220)
219 PRK01362 putative translaldola 83.0 4.1 8.8E-05 30.3 5.5 50 3-52 159-210 (214)
220 cd03332 LMO_FMN L-Lactate 2-mo 82.7 2 4.3E-05 34.7 4.0 87 2-90 255-378 (383)
221 PRK07428 nicotinate-nucleotide 82.6 1.1 2.4E-05 34.8 2.4 32 1-33 244-275 (288)
222 PF02662 FlpD: Methyl-viologen 82.4 3 6.4E-05 28.3 4.3 25 4-29 35-59 (124)
223 PLN02898 HMP-P kinase/thiamin- 82.1 1.7 3.7E-05 35.5 3.5 33 1-34 445-480 (502)
224 PRK12656 fructose-6-phosphate 81.3 4.5 9.8E-05 30.3 5.3 49 4-52 164-214 (222)
225 PRK08745 ribulose-phosphate 3- 81.2 1.9 4.2E-05 32.2 3.2 46 2-54 173-218 (223)
226 PF04898 Glu_syn_central: Glut 80.2 5.3 0.00011 31.2 5.5 67 3-69 198-273 (287)
227 cd01572 QPRTase Quinolinate ph 79.8 1.1 2.3E-05 34.3 1.5 32 1-33 227-258 (268)
228 cd02808 GltS_FMN Glutamate syn 79.7 0.89 1.9E-05 36.4 1.1 38 39-76 353-390 (392)
229 PRK09722 allulose-6-phosphate 79.6 2.7 5.8E-05 31.6 3.6 49 2-55 171-219 (229)
230 cd02922 FCB2_FMN Flavocytochro 79.4 6.3 0.00014 31.2 5.8 30 60-89 311-340 (344)
231 PF04481 DUF561: Protein of un 79.1 6.5 0.00014 30.0 5.5 49 1-53 187-235 (242)
232 COG1908 FrhD Coenzyme F420-red 78.6 1.2 2.5E-05 31.1 1.2 29 1-30 33-61 (132)
233 PRK14057 epimerase; Provisiona 78.2 2.4 5.2E-05 32.5 3.0 47 2-55 195-241 (254)
234 PRK08091 ribulose-phosphate 3- 77.1 2.8 6E-05 31.6 3.0 46 2-54 181-226 (228)
235 PRK08072 nicotinate-nucleotide 76.9 2.1 4.6E-05 33.0 2.4 32 1-33 233-264 (277)
236 PF00834 Ribul_P_3_epim: Ribul 76.7 1.7 3.7E-05 31.9 1.8 32 1-33 167-198 (201)
237 TIGR02134 transald_staph trans 76.5 6.4 0.00014 29.8 4.8 48 5-52 175-229 (236)
238 COG0352 ThiE Thiamine monophos 75.6 6.2 0.00014 29.3 4.5 33 1-34 159-191 (211)
239 PRK13958 N-(5'-phosphoribosyl) 75.2 1.6 3.6E-05 31.9 1.3 22 7-28 6-27 (207)
240 PRK07114 keto-hydroxyglutarate 75.1 4.6 9.9E-05 30.3 3.7 33 1-33 159-192 (222)
241 KOG1799|consensus 74.9 4.6 9.9E-05 33.0 3.8 61 2-70 358-418 (471)
242 PRK08385 nicotinate-nucleotide 74.5 2.5 5.4E-05 32.7 2.2 31 2-33 233-263 (278)
243 TIGR01182 eda Entner-Doudoroff 74.5 5.3 0.00011 29.5 3.8 33 1-34 149-181 (204)
244 PRK12290 thiE thiamine-phospha 74.1 5.1 0.00011 33.1 4.0 33 1-34 365-397 (437)
245 cd00331 IGPS Indole-3-glycerol 73.6 1.6 3.5E-05 31.5 1.0 33 1-33 73-105 (217)
246 PRK01222 N-(5'-phosphoribosyl) 72.8 2.1 4.5E-05 31.5 1.3 23 6-28 7-29 (210)
247 PLN02363 phosphoribosylanthran 72.3 2.1 4.6E-05 32.6 1.3 22 7-28 52-73 (256)
248 PRK12858 tagatose 1,6-diphosph 72.2 15 0.00032 29.2 6.1 71 3-82 245-325 (340)
249 COG1411 Uncharacterized protei 72.1 3 6.4E-05 31.5 2.0 32 2-33 183-214 (229)
250 TIGR01859 fruc_bis_ald_ fructo 71.7 12 0.00026 28.8 5.4 76 1-84 201-278 (282)
251 cd00405 PRAI Phosphoribosylant 71.3 2.4 5.1E-05 30.4 1.3 22 7-28 4-25 (203)
252 PRK05283 deoxyribose-phosphate 71.1 3 6.6E-05 32.0 2.0 25 3-27 198-222 (257)
253 PRK13957 indole-3-glycerol-pho 70.7 3.3 7.2E-05 31.6 2.1 28 1-28 103-130 (247)
254 PRK13306 ulaD 3-keto-L-gulonat 70.4 2.8 6.1E-05 30.9 1.6 29 3-34 166-196 (216)
255 PRK08005 epimerase; Validated 69.8 4.1 8.8E-05 30.2 2.3 31 2-33 165-195 (210)
256 PRK03512 thiamine-phosphate py 69.2 7.3 0.00016 28.6 3.6 32 1-33 159-190 (211)
257 PRK06801 hypothetical protein; 68.1 20 0.00043 27.8 5.9 36 1-37 204-241 (286)
258 PRK00230 orotidine 5'-phosphat 67.0 2.8 6.1E-05 31.0 1.0 32 3-35 171-213 (230)
259 PRK09517 multifunctional thiam 66.7 12 0.00027 32.4 4.9 32 1-33 167-198 (755)
260 TIGR01182 eda Entner-Doudoroff 66.6 3.8 8.3E-05 30.3 1.6 30 8-37 107-143 (204)
261 PRK06806 fructose-bisphosphate 65.6 22 0.00048 27.4 5.7 34 1-35 201-236 (281)
262 COG0135 TrpF Phosphoribosylant 64.4 4.1 8.8E-05 30.3 1.4 22 7-28 7-28 (208)
263 PRK07998 gatY putative fructos 62.4 28 0.00061 27.0 5.8 77 1-84 200-277 (283)
264 PF00697 PRAI: N-(5'phosphorib 62.3 4.1 8.9E-05 29.4 1.1 23 7-29 4-26 (197)
265 cd01571 NAPRTase_B Nicotinate 61.9 5.2 0.00011 31.0 1.7 31 2-33 247-277 (302)
266 PRK08185 hypothetical protein; 61.9 27 0.00059 27.0 5.6 77 1-84 199-276 (283)
267 PLN02535 glycolate oxidase 61.1 25 0.00055 28.2 5.5 39 61-99 319-360 (364)
268 COG0036 Rpe Pentose-5-phosphat 60.8 6.8 0.00015 29.6 2.1 47 2-55 171-217 (220)
269 KOG4201|consensus 59.9 8.2 0.00018 29.7 2.4 34 2-35 239-272 (289)
270 KOG0134|consensus 59.9 6.4 0.00014 32.2 1.9 32 3-34 321-353 (400)
271 COG1954 GlpP Glycerol-3-phosph 57.7 7.9 0.00017 28.4 1.9 30 1-30 145-174 (181)
272 PRK07315 fructose-bisphosphate 57.3 30 0.00064 26.8 5.1 34 1-35 203-238 (293)
273 PRK06015 keto-hydroxyglutarate 56.9 7.4 0.00016 28.7 1.7 33 5-37 100-139 (201)
274 PF01729 QRPTase_C: Quinolinat 55.8 7.9 0.00017 27.7 1.6 32 1-33 128-159 (169)
275 COG0176 MipB Transaldolase [Ca 54.7 40 0.00086 25.8 5.3 47 7-53 178-232 (239)
276 COG0269 SgbH 3-hexulose-6-phos 54.6 13 0.00028 28.1 2.6 32 2-34 166-197 (217)
277 cd00516 PRTase_typeII Phosphor 53.3 8.7 0.00019 28.8 1.6 32 2-34 241-272 (281)
278 PRK09427 bifunctional indole-3 52.7 8.4 0.00018 31.8 1.5 22 7-28 262-283 (454)
279 PRK07114 keto-hydroxyglutarate 52.6 9.4 0.0002 28.6 1.7 33 5-37 115-153 (222)
280 COG0800 Eda 2-keto-3-deoxy-6-p 52.0 25 0.00054 26.4 3.8 52 1-53 154-207 (211)
281 PF01070 FMN_dh: FMN-dependent 51.5 16 0.00035 29.0 2.9 85 2-89 227-349 (356)
282 PF01081 Aldolase: KDPG and KH 51.5 7.9 0.00017 28.4 1.1 31 7-37 106-143 (196)
283 cd00452 KDPG_aldolase KDPG and 50.8 9.3 0.0002 27.2 1.3 21 8-28 103-123 (190)
284 PRK07896 nicotinate-nucleotide 49.0 15 0.00032 28.6 2.3 31 2-33 248-278 (289)
285 PRK05835 fructose-bisphosphate 48.3 58 0.0013 25.6 5.5 77 1-84 205-303 (307)
286 PRK14567 triosephosphate isome 47.5 17 0.00037 27.8 2.4 34 1-35 203-237 (253)
287 PRK05567 inosine 5'-monophosph 47.4 13 0.00029 30.5 1.9 27 2-29 271-297 (486)
288 PTZ00314 inosine-5'-monophosph 47.1 15 0.00033 30.4 2.2 25 2-27 284-308 (495)
289 PF11247 DUF2675: Protein of u 46.6 68 0.0015 21.3 4.9 37 12-48 29-65 (98)
290 cd00381 IMPDH IMPDH: The catal 46.2 17 0.00037 28.4 2.3 26 2-28 137-162 (325)
291 TIGR01302 IMP_dehydrog inosine 45.9 14 0.0003 30.1 1.8 27 2-29 267-293 (450)
292 PRK07709 fructose-bisphosphate 44.5 80 0.0017 24.5 5.7 77 1-84 204-281 (285)
293 cd00311 TIM Triosephosphate is 44.0 15 0.00033 27.7 1.6 33 1-34 200-233 (242)
294 PRK05718 keto-hydroxyglutarate 43.5 16 0.00035 27.0 1.7 22 7-28 113-134 (212)
295 TIGR00259 thylakoid_BtpA membr 42.0 27 0.00058 26.8 2.7 50 1-53 201-254 (257)
296 TIGR01521 FruBisAldo_II_B fruc 40.8 89 0.0019 25.1 5.6 78 1-85 225-324 (347)
297 PRK00112 tgt queuine tRNA-ribo 40.4 18 0.0004 28.9 1.7 27 8-34 247-273 (366)
298 PRK07455 keto-hydroxyglutarate 40.2 17 0.00036 26.1 1.3 20 9-28 112-131 (187)
299 cd04736 MDH_FMN Mandelate dehy 40.1 21 0.00046 28.6 2.0 31 60-90 329-359 (361)
300 TIGR00419 tim triosephosphate 38.2 8.5 0.00018 28.4 -0.5 34 1-34 170-203 (205)
301 COG0149 TpiA Triosephosphate i 38.2 10 0.00022 29.1 -0.1 35 1-35 203-237 (251)
302 COG0800 Eda 2-keto-3-deoxy-6-p 37.3 24 0.00052 26.5 1.8 31 7-37 111-148 (211)
303 KOG0538|consensus 37.1 32 0.0007 27.7 2.5 29 62-90 320-348 (363)
304 PF01081 Aldolase: KDPG and KH 36.8 28 0.0006 25.6 2.0 26 3-28 61-86 (196)
305 PRK10279 hypothetical protein; 36.5 18 0.00038 28.1 1.0 26 3-28 152-177 (300)
306 PRK06015 keto-hydroxyglutarate 36.4 54 0.0012 24.1 3.5 32 1-33 145-176 (201)
307 TIGR00430 Q_tRNA_tgt tRNA-guan 36.1 23 0.00051 28.3 1.7 25 8-32 243-267 (368)
308 PF01702 TGT: Queuine tRNA-rib 36.0 30 0.00066 25.4 2.2 30 7-36 119-148 (238)
309 PLN02561 triosephosphate isome 35.1 25 0.00054 26.8 1.6 34 1-34 205-238 (253)
310 TIGR00167 cbbA ketose-bisphosp 35.0 1.3E+02 0.0027 23.4 5.5 37 1-37 207-244 (288)
311 PRK08610 fructose-bisphosphate 34.8 1.3E+02 0.0028 23.4 5.5 37 1-37 204-241 (286)
312 PHA00440 host protein H-NS-int 34.7 1.4E+02 0.003 19.9 4.9 36 13-48 30-65 (98)
313 PLN02417 dihydrodipicolinate s 33.8 43 0.00094 25.3 2.7 49 2-53 72-124 (280)
314 PRK06106 nicotinate-nucleotide 33.4 39 0.00085 26.2 2.4 31 2-33 240-270 (281)
315 TIGR00449 tgt_general tRNA-gua 33.2 28 0.00061 27.8 1.7 27 8-34 242-268 (367)
316 PRK02615 thiamine-phosphate py 33.0 18 0.00038 28.9 0.5 29 4-32 242-270 (347)
317 PRK06552 keto-hydroxyglutarate 32.4 36 0.00079 25.1 2.1 25 3-27 69-93 (213)
318 PRK06843 inosine 5-monophospha 32.4 27 0.00059 28.5 1.5 26 4-29 197-222 (404)
319 PRK13803 bifunctional phosphor 32.0 26 0.00056 29.8 1.4 22 7-28 8-29 (610)
320 PRK07428 nicotinate-nucleotide 31.7 61 0.0013 25.2 3.3 37 8-52 202-238 (288)
321 PRK01008 queuine tRNA-ribosylt 31.7 32 0.00069 27.8 1.8 28 8-35 262-289 (372)
322 COG0343 Tgt Queuine/archaeosin 31.1 42 0.00092 27.2 2.4 28 8-35 242-269 (372)
323 PRK07188 nicotinate phosphorib 31.0 33 0.00072 27.4 1.8 33 1-34 281-315 (352)
324 PRK09140 2-dehydro-3-deoxy-6-p 30.8 35 0.00077 24.9 1.8 27 3-29 64-90 (206)
325 cd02811 IDI-2_FMN Isopentenyl- 30.4 30 0.00066 26.9 1.4 29 62-90 296-324 (326)
326 PRK08227 autoinducer 2 aldolas 29.0 1.1E+02 0.0023 23.5 4.2 47 1-50 193-244 (264)
327 PRK09016 quinolinate phosphori 28.9 40 0.00086 26.5 1.8 31 2-33 254-284 (296)
328 PRK06559 nicotinate-nucleotide 28.7 41 0.00088 26.3 1.8 31 2-33 243-273 (290)
329 PRK00042 tpiA triosephosphate 28.6 20 0.00043 27.2 0.1 34 1-34 204-237 (250)
330 TIGR01303 IMP_DH_rel_1 IMP deh 28.5 45 0.00097 27.6 2.2 27 1-28 267-293 (475)
331 PRK07084 fructose-bisphosphate 28.5 2E+02 0.0043 22.9 5.7 25 13-37 252-276 (321)
332 COG3167 PilO Tfp pilus assembl 28.5 2.6E+02 0.0056 21.0 6.3 21 14-34 24-44 (211)
333 PRK13399 fructose-1,6-bisphosp 28.3 2E+02 0.0043 23.1 5.7 37 1-37 227-285 (347)
334 KOG2334|consensus 28.3 52 0.0011 27.5 2.5 36 1-36 210-249 (477)
335 PRK05718 keto-hydroxyglutarate 28.2 1.1E+02 0.0023 22.6 3.9 31 1-32 156-186 (212)
336 PRK03359 putative electron tra 27.9 30 0.00065 26.4 1.0 64 3-69 59-125 (256)
337 cd07208 Pat_hypo_Ecoli_yjju_li 27.1 39 0.00084 25.0 1.4 26 3-28 153-178 (266)
338 PLN02274 inosine-5'-monophosph 27.1 40 0.00088 28.1 1.7 27 3-29 291-317 (505)
339 cd00951 KDGDH 5-dehydro-4-deox 27.0 43 0.00094 25.4 1.7 52 1-56 70-125 (289)
340 PLN02716 nicotinate-nucleotide 26.7 48 0.0011 26.1 2.0 31 2-33 264-294 (308)
341 PTZ00333 triosephosphate isome 26.6 42 0.00091 25.6 1.6 34 1-34 208-241 (255)
342 COG0352 ThiE Thiamine monophos 26.5 27 0.00058 25.9 0.5 29 4-32 106-134 (211)
343 TIGR00432 arcsn_tRNA_tgt tRNA- 26.5 69 0.0015 27.2 2.9 28 8-35 122-149 (540)
344 cd04725 OMP_decarboxylase_like 26.0 27 0.00058 25.5 0.4 33 3-35 165-206 (216)
345 TIGR01334 modD putative molybd 25.9 39 0.00085 26.1 1.3 29 2-31 237-265 (277)
346 cd00408 DHDPS-like Dihydrodipi 25.9 66 0.0014 23.9 2.5 51 2-55 68-122 (281)
347 PF07287 DUF1446: Protein of u 25.4 25 0.00055 28.2 0.2 21 12-32 150-170 (362)
348 COG0069 GltB Glutamate synthas 25.3 1.2E+02 0.0026 25.6 4.1 48 25-72 424-475 (485)
349 TIGR02313 HpaI-NOT-DapA 2,4-di 25.2 70 0.0015 24.4 2.6 52 1-55 70-125 (294)
350 PLN02979 glycolate oxidase 24.9 41 0.00088 27.2 1.3 29 61-89 319-347 (366)
351 PLN02429 triosephosphate isome 24.8 29 0.00062 27.5 0.4 34 1-34 264-297 (315)
352 cd00439 Transaldolase Transald 24.6 1.2E+02 0.0027 22.8 3.8 39 5-51 212-250 (252)
353 PLN02493 probable peroxisomal 24.4 42 0.00092 27.0 1.3 30 60-89 319-348 (367)
354 COG1137 YhbG ABC-type (unclass 24.3 23 0.00049 27.1 -0.2 30 4-33 139-168 (243)
355 cd00947 TBP_aldolase_IIB Tagat 24.2 2.5E+02 0.0054 21.6 5.5 37 1-37 197-234 (276)
356 PRK06543 nicotinate-nucleotide 24.1 57 0.0012 25.3 1.9 30 2-32 239-268 (281)
357 PF07047 OPA3: Optic atrophy 3 24.0 1.8E+02 0.0039 19.8 4.2 24 12-37 65-88 (134)
358 TIGR02708 L_lactate_ox L-lacta 23.9 59 0.0013 26.2 2.0 30 60-89 323-352 (367)
359 COG0763 LpxB Lipid A disacchar 23.9 81 0.0017 25.7 2.8 27 12-38 17-46 (381)
360 PRK13533 7-cyano-7-deazaguanin 23.3 79 0.0017 26.4 2.7 28 8-35 226-253 (487)
361 TIGR01858 tag_bisphos_ald clas 23.2 2.4E+02 0.0053 21.8 5.2 37 1-37 201-238 (282)
362 PRK12738 kbaY tagatose-bisphos 23.0 2.1E+02 0.0046 22.2 4.9 37 1-37 203-240 (286)
363 PRK08662 nicotinate phosphorib 22.8 58 0.0013 25.8 1.8 31 2-34 263-293 (343)
364 PRK10119 putative hydrolase; P 22.5 2.7E+02 0.0058 20.9 5.2 17 19-37 130-146 (231)
365 cd07227 Pat_Fungal_NTE1 Fungal 22.4 63 0.0014 24.7 1.8 26 3-28 161-186 (269)
366 PRK06978 nicotinate-nucleotide 22.1 64 0.0014 25.3 1.9 31 2-33 251-281 (294)
367 PF01116 F_bP_aldolase: Fructo 22.0 2.7E+02 0.0058 21.5 5.3 37 1-37 206-243 (287)
368 TIGR01306 GMP_reduct_2 guanosi 21.9 69 0.0015 25.4 2.0 28 2-29 138-165 (321)
369 PRK14905 triosephosphate isome 21.9 47 0.001 26.5 1.1 35 1-35 214-248 (355)
370 cd07225 Pat_PNPLA6_PNPLA7 Pata 21.7 50 0.0011 25.6 1.2 26 3-28 168-193 (306)
371 cd03237 ABC_RNaseL_inhibitor_d 21.2 33 0.00071 25.4 0.1 94 5-99 116-234 (246)
372 COG0284 PyrF Orotidine-5'-phos 21.1 67 0.0015 24.3 1.8 19 17-35 202-220 (240)
373 TIGR01305 GMP_reduct_1 guanosi 20.5 72 0.0016 25.7 1.9 27 3-29 152-178 (343)
374 TIGR01698 PUNP purine nucleoti 20.5 60 0.0013 24.5 1.4 24 9-32 159-182 (237)
375 PRK15452 putative protease; Pr 20.4 42 0.00091 27.6 0.5 22 10-31 11-32 (443)
376 KOG3111|consensus 20.3 95 0.0021 23.5 2.4 47 3-56 172-218 (224)
377 PRK09196 fructose-1,6-bisphosp 20.0 3.2E+02 0.007 21.9 5.4 37 1-37 227-285 (347)
No 1
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.86 E-value=5.9e-22 Score=156.13 Aligned_cols=75 Identities=39% Similarity=0.537 Sum_probs=71.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLEL 75 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~ 75 (100)
++|++|||||+|.||+||||||||+|++|||||++++..|++||.+.++.+++||+..|+++|++|+.++...++
T Consensus 274 ~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l 348 (360)
T COG1304 274 IEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPL 348 (360)
T ss_pred eEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcHHHhccCce
Confidence 479999999999999999999999999999999999999999999999999999999999999999999987654
No 2
>KOG0538|consensus
Probab=99.82 E-value=3.8e-21 Score=149.12 Aligned_cols=73 Identities=41% Similarity=0.665 Sum_probs=70.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFL 73 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~ 73 (100)
|||+.|||+|+|.||+|||||||+.|++|||++|+|+|+|+.||.+.++.|++|+...|.+.||+|+.++..+
T Consensus 279 i~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~ 351 (363)
T KOG0538|consen 279 IPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFELTMALSGCRSVKEITRN 351 (363)
T ss_pred eEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHHHHHHHHHhCCCchhhhCcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998765
No 3
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.82 E-value=1.3e-20 Score=148.08 Aligned_cols=72 Identities=35% Similarity=0.477 Sum_probs=65.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF 72 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~ 72 (100)
+|||+|||||+|.||+||+||||++|++|||||+++...|++||.+.++.|++||+..|+++|+.++.++..
T Consensus 281 ~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~ 352 (356)
T PF01070_consen 281 IPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGGEEGVERVLEILKEELKRAMFLLGARSIAELRR 352 (356)
T ss_dssp SEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTG
T ss_pred eeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCH
Confidence 589999999999999999999999999999999999989999999999999999999999999999999865
No 4
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.81 E-value=5.5e-20 Score=145.30 Aligned_cols=78 Identities=36% Similarity=0.569 Sum_probs=73.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNL 78 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~~e~ 78 (100)
+|||+|||||+|.||+|||||||++|++|||+|++++..|++|+.+.++.+++|++..|++.|+.|+.++....+...
T Consensus 280 ~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~ 357 (367)
T PLN02493 280 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTE 357 (367)
T ss_pred CeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHH
Confidence 589999999999999999999999999999999999999999999999999999999999999999999988766433
No 5
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.81 E-value=5.2e-20 Score=146.03 Aligned_cols=74 Identities=30% Similarity=0.448 Sum_probs=71.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLE 74 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e 74 (100)
+|||+|||||+|.||+||||||||+|++|||||++++..|++||.+.++.|++||+..|++.|++++.++...-
T Consensus 301 ~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~ 374 (381)
T PRK11197 301 ITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDS 374 (381)
T ss_pred CeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999987653
No 6
>PLN02979 glycolate oxidase
Probab=99.81 E-value=8.3e-20 Score=144.18 Aligned_cols=75 Identities=37% Similarity=0.599 Sum_probs=72.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLEL 75 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~ 75 (100)
++||+|||||+|.||+||||||||+|++|||+|++++..|++||.+.++.|++|++..|++.|+.|+.++....+
T Consensus 279 ~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 353 (366)
T PLN02979 279 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHI 353 (366)
T ss_pred CeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhh
Confidence 589999999999999999999999999999999999999999999999999999999999999999999988665
No 7
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.80 E-value=6.8e-20 Score=144.81 Aligned_cols=75 Identities=31% Similarity=0.503 Sum_probs=71.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLEL 75 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~ 75 (100)
+|||+|||||+|.|++|||+||||+|++|||+|++|+..|++||.+.++.|++||+..|+++|+.++.++....+
T Consensus 284 i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l 358 (367)
T TIGR02708 284 VPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDL 358 (367)
T ss_pred CcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCcccc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999876543
No 8
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.80 E-value=9.8e-20 Score=143.65 Aligned_cols=71 Identities=38% Similarity=0.560 Sum_probs=68.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+|||+|||||+|.||+|||+||||+|++|||+|++++..|++||.+.++.|++||+..|++.|+.|+.++.
T Consensus 290 ~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~ 360 (361)
T cd04736 290 KPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence 58999999999999999999999999999999999988999999999999999999999999999999873
No 9
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.79 E-value=1.4e-19 Score=143.62 Aligned_cols=72 Identities=32% Similarity=0.551 Sum_probs=69.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF 72 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~ 72 (100)
+||++|||||+|.||+||||||||+|++|||||++++..|++||.+.++.+++||+..|.++|+.++.++..
T Consensus 309 ~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~ 380 (383)
T cd03332 309 LTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTR 380 (383)
T ss_pred CeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 589999999999999999999999999999999999999999999999999999999999999999998854
No 10
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.77 E-value=7.6e-19 Score=137.66 Aligned_cols=71 Identities=39% Similarity=0.553 Sum_probs=68.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+|||+|||||+|.||+|||+||||+|++|||||+++.+.|++||.+.++.+++||+..|++.|+.++.++.
T Consensus 272 ~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~~i~~l~ 342 (344)
T cd02922 272 IEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQLG 342 (344)
T ss_pred ceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999874
No 11
>PLN02535 glycolate oxidase
Probab=99.76 E-value=1.4e-18 Score=137.27 Aligned_cols=73 Identities=38% Similarity=0.619 Sum_probs=70.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFL 73 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~ 73 (100)
+|||+|||||+|.||+|||+|||++|++||++|++++..|++|+.+.++.+++|++..|.++|+.++.++...
T Consensus 279 ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~ 351 (364)
T PLN02535 279 VPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRS 351 (364)
T ss_pred CCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhh
Confidence 5899999999999999999999999999999999999899999999999999999999999999999998763
No 12
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.75 E-value=5.1e-18 Score=133.04 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=80.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH------HH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF------LE 74 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~------~e 74 (100)
+|||++|||+++.|++|++++|||+|++|++||+++...|++++.++++.|.+||+..|+++|+.++.++.. .+
T Consensus 262 ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~~~~~~ 341 (352)
T PRK05437 262 LPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRKVPLVLSGE 341 (352)
T ss_pred CeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCCCEEecHh
Confidence 589999999999999999999999999999999999888999999999999999999999999999999876 67
Q ss_pred HHHHHHHcCcC
Q psy7649 75 LNNLVPTLLLG 85 (100)
Q Consensus 75 ~~e~~~~lG~~ 85 (100)
+++|++++|++
T Consensus 342 ~~~~~~~~~~~ 352 (352)
T PRK05437 342 LREWLEQRGID 352 (352)
T ss_pred HHHHHHHhCCC
Confidence 99999998863
No 13
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.75 E-value=1.5e-18 Score=136.43 Aligned_cols=73 Identities=33% Similarity=0.480 Sum_probs=70.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFL 73 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~ 73 (100)
+|||+|||||+|.|++|||+||||+|++||+++++++..|++||.+.++.+++||+..|.+.|+.++.++...
T Consensus 277 i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~ 349 (351)
T cd04737 277 VPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKRT 349 (351)
T ss_pred CeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999998643
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.70 E-value=3.2e-17 Score=127.15 Aligned_cols=70 Identities=21% Similarity=0.341 Sum_probs=67.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+|||++||||++.|++||+++|||+|++|+|||+++.. |++++.++++.|++||+..|+++|++|+.++.
T Consensus 256 ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el~ 325 (326)
T cd02811 256 LPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAMFLTGAKNLAELK 325 (326)
T ss_pred CcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhc
Confidence 58999999999999999999999999999999999887 99999999999999999999999999999875
No 15
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.69 E-value=5.7e-17 Score=124.00 Aligned_cols=71 Identities=42% Similarity=0.615 Sum_probs=68.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+|||++|||+++.|++|++++|||+|++||||++++.+.|++++.++++.+++||+..|.+.|+.|+.++.
T Consensus 228 ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l~ 298 (299)
T cd02809 228 IEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLD 298 (299)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 68999999999999999999999999999999999988999999999999999999999999999998874
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.67 E-value=1.3e-16 Score=124.15 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=70.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLE 74 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e 74 (100)
+|||++|||+++.|++|+|++|||+|++||+||.++...|++++.++++.+++||+..|+++|++|+.++...+
T Consensus 255 ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el~~~~ 328 (333)
T TIGR02151 255 APIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKKVP 328 (333)
T ss_pred CeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHccCC
Confidence 58999999999999999999999999999999999887899999999999999999999999999999987654
No 17
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.66 E-value=1.8e-16 Score=125.67 Aligned_cols=86 Identities=34% Similarity=0.369 Sum_probs=60.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------CHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------GSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+||++||||+|+.|++||++||||+|++||++|++++|. ++.|+.++...+.+.++......++.|+.+.+
T Consensus 286 i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~ 365 (392)
T cd02808 286 VSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSL 365 (392)
T ss_pred CeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999775 34444444444444444444444455555555
Q ss_pred HHHHHHHHHHcCcCC
Q psy7649 72 FLELNNLVPTLLLGS 86 (100)
Q Consensus 72 ~~e~~e~~~~lG~~s 86 (100)
..|+++.+..+|+++
T Consensus 366 ~~el~~~m~~~G~~~ 380 (392)
T cd02808 366 AEELRELAAALGKRS 380 (392)
T ss_pred HHHHHHHHHHhCCCC
Confidence 555555555555544
No 18
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.64 E-value=4.1e-17 Score=129.12 Aligned_cols=85 Identities=32% Similarity=0.391 Sum_probs=65.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------CHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------GSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
|+|++|||++|+.||+||+|||||+|++||++|.+++|. ++.|+.++...+++.++......++.|+...+
T Consensus 275 V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~ 354 (368)
T PF01645_consen 275 VSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKAC 354 (368)
T ss_dssp SEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHH
T ss_pred eEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999984 57899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcC
Q psy7649 72 FLELNNLVPTLLLG 85 (100)
Q Consensus 72 ~~e~~e~~~~lG~~ 85 (100)
..|++++++++|++
T Consensus 355 ~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 355 AEELREILAALGKR 368 (368)
T ss_dssp HHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999999985
No 19
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.60 E-value=3.8e-16 Score=126.96 Aligned_cols=93 Identities=32% Similarity=0.357 Sum_probs=86.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------CHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------GSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+.|++|||++||.||+||++||||+|++|+.+|.++.|. ++.||+++.+.+++.++..-...++.|+...+
T Consensus 375 v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~ 454 (485)
T COG0069 375 VKLIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFV 454 (485)
T ss_pred eEEEecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHH
Confidence 468999999999999999999999999999999999883 68999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcCCCCCCCcc
Q psy7649 72 FLELNNLVPTLLLGSIQPPSKR 93 (100)
Q Consensus 72 ~~e~~e~~~~lG~~s~~~~~~~ 93 (100)
..|++++++++|++++++..=|
T Consensus 455 a~e~rella~lG~~~l~el~g~ 476 (485)
T COG0069 455 AEELRELLAALGKRSLSELIGR 476 (485)
T ss_pred HHHHHHHHHHhCCCCHHHHhcc
Confidence 9999999999999998865544
No 20
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.43 E-value=5.4e-14 Score=125.13 Aligned_cols=89 Identities=24% Similarity=0.312 Sum_probs=80.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------CHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------GSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
|+|++|||++||.||+||++||||.|++|+.+|.+++|. |+.|++++...+++++.. -....+.|+...+
T Consensus 1068 v~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~-~~~~~v~nf~~~~ 1146 (1485)
T PRK11750 1068 IRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYH-GLPEMVMNYFEFI 1146 (1485)
T ss_pred eEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhcc-chHHHHHHHHHHH
Confidence 579999999999999999999999999999999999983 688999999998886655 6778899999999
Q ss_pred HHHHHHHHHHcCcCCCCCC
Q psy7649 72 FLELNNLVPTLLLGSIQPP 90 (100)
Q Consensus 72 ~~e~~e~~~~lG~~s~~~~ 90 (100)
..|++++++++|++++++.
T Consensus 1147 ~~el~~~la~lG~~s~~el 1165 (1485)
T PRK11750 1147 AEETREWMAQLGVRSLEDL 1165 (1485)
T ss_pred HHHHHHHHHHhCCCCHHHh
Confidence 9999999999999988744
No 21
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.33 E-value=9.4e-13 Score=102.95 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=62.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH------------------HHH-----hc-------cCHH-------H
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL------------------WGL-----AH-------SGSN-------G 43 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L------------------~al-----~~-------~g~~-------g 43 (100)
+|||+||||+++.|++|||++|||+|++|++|+ ..+ .. .|.+ .
T Consensus 202 ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~ 281 (326)
T PRK05458 202 KPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGS 281 (326)
T ss_pred CCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccCC
Confidence 589999999999999999999999999999998 222 11 2222 4
Q ss_pred HHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649 44 AARVLQSLVHKILPEAVADKVHNAYSIFFLE 74 (100)
Q Consensus 44 v~~~i~~l~~el~~~m~l~g~~n~~~l~~~e 74 (100)
+.+.+..|..+|+..|...|++|+.++.+.+
T Consensus 282 l~~~l~~l~~gLr~~m~~~Ga~~i~el~~~~ 312 (326)
T PRK05458 282 LKDTLTEMEQDLQSSISYAGGRDLDAIRKVD 312 (326)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHhcCC
Confidence 7888999999999999999999999987533
No 22
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.26 E-value=3.9e-12 Score=100.75 Aligned_cols=75 Identities=24% Similarity=0.291 Sum_probs=64.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH------------------------HHHHHHHH-------
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS------------------------NGAARVLQ------- 49 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~------------------------~gv~~~i~------- 49 (100)
+|||+||||+++.|++|||++|||.|++|++|+.+..+.|+ -.+.+.+.
T Consensus 257 vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~~~eg~~~~~~~~g~~~~~~~~~~~~~~ 336 (368)
T PRK08649 257 VHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPSLPRGTRIKVGTTGSLEQILFGPSHLPD 336 (368)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCcCCCceEEeCCCcCcHHHHhcCcccccc
Confidence 58999999999999999999999999999999987666543 13556655
Q ss_pred ---HHHHHHhHHHHhcccccHHHhhHHHH
Q psy7649 50 ---SLVHKILPEAVADKVHNAYSIFFLEL 75 (100)
Q Consensus 50 ---~l~~el~~~m~l~g~~n~~~l~~~e~ 75 (100)
++...|+..|.-.|.+|+.++++.|+
T Consensus 337 ~~~~~~g~l~~~m~~~g~~~~~~~~~~~~ 365 (368)
T PRK08649 337 GTHNLVGALRRSMATLGYSDLKEFQKVEV 365 (368)
T ss_pred hHHHHHHHHHHHHHhcCCCcHHHHhhcCe
Confidence 88889999999999999999987654
No 23
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.16 E-value=3.4e-11 Score=95.54 Aligned_cols=75 Identities=23% Similarity=0.276 Sum_probs=59.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---H--------------------H----HHHHH-----
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS---N--------------------G----AARVL----- 48 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~---~--------------------g----v~~~i----- 48 (100)
+|||+||||+++.|++|||++|||+|++|++|+.+..+.|. . | +.+.+
T Consensus 256 vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~ 335 (369)
T TIGR01304 256 VHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHPRLPRGVVTESGTVGEAPTLEEILHGPST 335 (369)
T ss_pred ceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCccCCccccccccccCCCCcHHHHeeCCCC
Confidence 58999999999999999999999999999999998876542 1 2 33332
Q ss_pred -----HHHHHHHhHHHHhcccccHHHhhHHHH
Q psy7649 49 -----QSLVHKILPEAVADKVHNAYSIFFLEL 75 (100)
Q Consensus 49 -----~~l~~el~~~m~l~g~~n~~~l~~~e~ 75 (100)
.++.--|+..|.-+|..++.++.+.++
T Consensus 336 ~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~ 367 (369)
T TIGR01304 336 LPDGVENFEGGLKRAMAKCGYTDLKEFQKVSL 367 (369)
T ss_pred CCcchhhhHHHHHHHHHHcCchhhhhhhhcce
Confidence 356667888888888888887776553
No 24
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.08 E-value=7.2e-11 Score=92.26 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=53.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH-------------------------------------HH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS-------------------------------------NG 43 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~-------------------------------------~g 43 (100)
+|||+|||||++.||+||||+|||+|++|++|--.-...|+ -.
T Consensus 199 ~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~ 278 (321)
T TIGR01306 199 KPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGS 278 (321)
T ss_pred CeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccccccccceEEEeccCCC
Confidence 58999999999999999999999999999988532211110 01
Q ss_pred HHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649 44 AARVLQSLVHKILPEAVADKVHNAYSIFFLE 74 (100)
Q Consensus 44 v~~~i~~l~~el~~~m~l~g~~n~~~l~~~e 74 (100)
+.+.+..+...|+..|.-.|++|+.++...+
T Consensus 279 ~~~~~~~~~~glr~~~~~~G~~~l~~~~~~~ 309 (321)
T TIGR01306 279 LSDTLIEMQQDLQSSISYAGGKDLDSLRTVD 309 (321)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHhhCC
Confidence 4455566667777777777777777766543
No 25
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.06 E-value=1.7e-10 Score=94.54 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=58.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS--------------------------------------- 41 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~--------------------------------------- 41 (100)
+|||+|||||++.||+||||+|||+|++|++|--.-.+.|+
T Consensus 353 ~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~eg 432 (502)
T PRK07107 353 IPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFEEG 432 (502)
T ss_pred ceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccCCc
Confidence 58999999999999999999999999999998542211110
Q ss_pred --------HHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649 42 --------NGAARVLQSLVHKILPEAVADKVHNAYSIFF 72 (100)
Q Consensus 42 --------~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~ 72 (100)
-.+...+..+...|+..|.-.|+.|+.++..
T Consensus 433 v~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~ 471 (502)
T PRK07107 433 VDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQ 471 (502)
T ss_pred cEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHh
Confidence 0266777888889999999999999988875
No 26
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.01 E-value=2.7e-10 Score=89.69 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=55.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC-----------------H-----------------H----
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG-----------------S-----------------N---- 42 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g-----------------~-----------------~---- 42 (100)
+|||+|||||++.||+||||+|||+|++|+.+.-.-...| . +
T Consensus 213 v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~e~ 292 (343)
T TIGR01305 213 GHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASEGKTV 292 (343)
T ss_pred CeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCcccccccccCceE
Confidence 5899999999999999999999999999966532111100 0 0
Q ss_pred ------HHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649 43 ------GAARVLQSLVHKILPEAVADKVHNAYSIFF 72 (100)
Q Consensus 43 ------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~ 72 (100)
.+.+.+..+...|+..|.-.|+.|+.++..
T Consensus 293 ~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~ 328 (343)
T TIGR01305 293 EVPYRGDVENTILDILGGLRSACTYVGAAKLKELSK 328 (343)
T ss_pred EeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHh
Confidence 256667788888888888888888888754
No 27
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.98 E-value=3.8e-10 Score=91.66 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=59.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS--------------------------------------- 41 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~--------------------------------------- 41 (100)
+|||+||||+++.|++|||++|||+|++|+.|-..-.+.|+
T Consensus 332 ~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~ 411 (486)
T PRK05567 332 IPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKL 411 (486)
T ss_pred CeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhccccccccccccccccc
Confidence 58999999999999999999999999999988544321110
Q ss_pred ------------HHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649 42 ------------NGAARVLQSLVHKILPEAVADKVHNAYSIFF 72 (100)
Q Consensus 42 ------------~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~ 72 (100)
-.+.+.+..+...|+..|.-.|+.|+.++..
T Consensus 412 ~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~ 454 (486)
T PRK05567 412 VPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELRE 454 (486)
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHh
Confidence 1267778889999999999999999999875
No 28
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.98 E-value=2.8e-10 Score=89.98 Aligned_cols=74 Identities=22% Similarity=0.242 Sum_probs=58.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC----------------------------------------
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG---------------------------------------- 40 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g---------------------------------------- 40 (100)
+|||+||||+++.||+||||+|||+|++|++|--.-.+.|
T Consensus 212 v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~~~~~~~~ 291 (352)
T PF00478_consen 212 VPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRYFQAEDKKF 291 (352)
T ss_dssp SEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTCTSSTSSTS
T ss_pred CceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhccccccccc
Confidence 6899999999999999999999999999988754332211
Q ss_pred -----------HHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649 41 -----------SNGAARVLQSLVHKILPEAVADKVHNAYSIFFLE 74 (100)
Q Consensus 41 -----------~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e 74 (100)
.-.+.+.+..+...|+..|.-.|+.|+.++....
T Consensus 292 v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 292 VPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp SSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred cccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 0135566788899999999999999999998764
No 29
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.95 E-value=7.5e-10 Score=90.51 Aligned_cols=72 Identities=25% Similarity=0.316 Sum_probs=56.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC-----------------H----------------------
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG-----------------S---------------------- 41 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g-----------------~---------------------- 41 (100)
+|+|+||||+++.|++||+++|||+|++|+.|.-.-.+.+ +
T Consensus 345 v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~ 424 (495)
T PTZ00314 345 VPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKV 424 (495)
T ss_pred CeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhccccccccccccccccc
Confidence 5899999999999999999999999999999865322111 0
Q ss_pred -----------HHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649 42 -----------NGAARVLQSLVHKILPEAVADKVHNAYSIFF 72 (100)
Q Consensus 42 -----------~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~ 72 (100)
-.+.+.+..+...|+..|.-.|+.|+.++..
T Consensus 425 ~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 425 AQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred CCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 1256667777788888888888888877654
No 30
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.95 E-value=4.7e-10 Score=88.36 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=58.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH----------------------------------H----
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS----------------------------------N---- 42 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~----------------------------------~---- 42 (100)
+|||+||||+++.||+|||++|||+|++|+.|--.-.+.|+ +
T Consensus 214 vpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~~~ 293 (346)
T PRK05096 214 GQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTV 293 (346)
T ss_pred CCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhccCcccccccccCceE
Confidence 58999999999999999999999999999988432221111 0
Q ss_pred ------HHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649 43 ------GAARVLQSLVHKILPEAVADKVHNAYSIFF 72 (100)
Q Consensus 43 ------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~ 72 (100)
.+...+..+...|+..|.-.|+.|+.++..
T Consensus 294 ~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~ 329 (346)
T PRK05096 294 KLPLRGPVENTARDILGGLRSACTYVGASRLKELTK 329 (346)
T ss_pred EeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHh
Confidence 266778888999999999999999999864
No 31
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.94 E-value=6.6e-10 Score=89.16 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=58.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH--------------------------------H------
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS--------------------------------N------ 42 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~--------------------------------~------ 42 (100)
+|||+||||+++.|++|||++|||+|++|++|.-.-.+.|+ +
T Consensus 257 vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~ 336 (404)
T PRK06843 257 ICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKK 336 (404)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccc
Confidence 58999999999999999999999999999999753222110 0
Q ss_pred --------------HHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649 43 --------------GAARVLQSLVHKILPEAVADKVHNAYSIFF 72 (100)
Q Consensus 43 --------------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~ 72 (100)
.+.+.+..+...|+..|.-.|++|+.++..
T Consensus 337 ~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~ 380 (404)
T PRK06843 337 LVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKI 380 (404)
T ss_pred cCCCccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHh
Confidence 156677788888999999999999988875
No 32
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.91 E-value=1.3e-09 Score=88.83 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=54.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhc------------------------------------------
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAH------------------------------------------ 38 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~------------------------------------------ 38 (100)
+|+|+||||+++.|++|||++|||+|++|+.|--.-..
T Consensus 329 ~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~ 408 (475)
T TIGR01303 329 GHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKAL 408 (475)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhcccc
Confidence 58999999999999999999999999999988422211
Q ss_pred --cCHHH-----------HHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649 39 --SGSNG-----------AARVLQSLVHKILPEAVADKVHNAYSIFF 72 (100)
Q Consensus 39 --~g~~g-----------v~~~i~~l~~el~~~m~l~g~~n~~~l~~ 72 (100)
+|.+| +.+.+..+...|+..|.-.|++|+.++..
T Consensus 409 v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~ 455 (475)
T TIGR01303 409 FEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHE 455 (475)
T ss_pred ccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHh
Confidence 11111 45666777777888888888888877654
No 33
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.89 E-value=1.4e-09 Score=84.74 Aligned_cols=73 Identities=25% Similarity=0.243 Sum_probs=60.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS--------------------------------------- 41 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~--------------------------------------- 41 (100)
+|||+||||+++.|++||+++|||.|++|+.|+-.-.+.|+
T Consensus 198 vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~ 277 (325)
T cd00381 198 VPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKKLVP 277 (325)
T ss_pred CcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccccccccccccccC
Confidence 58999999999999999999999999999999875443321
Q ss_pred ----------HHHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649 42 ----------NGAARVLQSLVHKILPEAVADKVHNAYSIFFL 73 (100)
Q Consensus 42 ----------~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~ 73 (100)
-.+.+.+..+...|+..|.-.|++|+.++...
T Consensus 278 eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~ 319 (325)
T cd00381 278 EGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEK 319 (325)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhc
Confidence 02566777888888899999999998888764
No 34
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.86 E-value=5.2e-09 Score=81.24 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=53.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+|||++|||+|+.|++|++.+|||+|.+++++++ .|+ ..++.+.+||+..|...|..++.++.
T Consensus 240 ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~----~g~----~~~~~i~~~L~~~l~~~g~~~i~e~~ 302 (334)
T PRK07565 240 ADLAATTGVHDAEDVIKMLLAGADVVMIASALLR----HGP----DYIGTILRGLEDWMERHGYESLQQFR 302 (334)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh----hCc----HHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 5899999999999999999999999999999986 344 35667778888888888888877754
No 35
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.78 E-value=7.7e-09 Score=84.87 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=57.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS--------------------------------------- 41 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~--------------------------------------- 41 (100)
+|||+||||+++.|++|||++||++|++|+.|...-.+.|+
T Consensus 352 vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v~ 431 (505)
T PLN02274 352 VPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKIA 431 (505)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccccC
Confidence 58999999999999999999999999999999765443221
Q ss_pred H----------HHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649 42 N----------GAARVLQSLVHKILPEAVADKVHNAYSIFFL 73 (100)
Q Consensus 42 ~----------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~ 73 (100)
+ .+...+..+...|+..|.-.|++|+.++..+
T Consensus 432 egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 432 QGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred CceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 1 1334566777778888888888888877665
No 36
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.70 E-value=1.7e-08 Score=82.50 Aligned_cols=36 Identities=33% Similarity=0.426 Sum_probs=33.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGL 36 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al 36 (100)
+|+|++|||+++.|++|||++||++|++|+.|+-.-
T Consensus 331 ~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~ 366 (479)
T PRK07807 331 AHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTY 366 (479)
T ss_pred CcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCc
Confidence 589999999999999999999999999999997543
No 37
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.63 E-value=1.1e-08 Score=82.54 Aligned_cols=39 Identities=36% Similarity=0.543 Sum_probs=34.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS 39 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~ 39 (100)
+|||+||||+++.|++|||++||++|++|+.|.-.-.+.
T Consensus 328 vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~p 366 (450)
T TIGR01302 328 IPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESP 366 (450)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCC
Confidence 589999999999999999999999999999987655443
No 38
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.61 E-value=8.1e-08 Score=74.63 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=53.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+||+++|||+|+.|+++.+..|||+|.+++++++ .|+. .+..+.+||...|.-.|..++.++.
T Consensus 238 ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~----~gp~----~~~~i~~~L~~~l~~~g~~~i~e~~ 300 (325)
T cd04739 238 ASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR----HGPD----YIGTLLAGLEAWMEEHGYESVQQLR 300 (325)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh----cCch----HHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 6899999999999999999999999999999884 3543 5556778888888888888887754
No 39
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.48 E-value=3.5e-07 Score=69.64 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=53.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+|||+.|||+|+.|+.+++..|||+|.+||++++ .+ ..+..++++|...|.-.|..++.++.
T Consensus 235 ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~----~p-----~~~~~i~~~l~~~~~~~g~~~~~e~~ 296 (300)
T TIGR01037 235 IPIIGVGGITSFEDALEFLMAGASAVQVGTAVYY----RG-----FAFKKIIEGLIAFLKAEGFTSIEELI 296 (300)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCceeecHHHhc----Cc-----hHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 5899999999999999999999999999999884 22 45677888999999999988888764
No 40
>PLN02826 dihydroorotate dehydrogenase
Probab=98.46 E-value=4.9e-07 Score=72.74 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=53.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+|||.+|||.|+.|+++.+..||++|.+++.+++ .|+. .+..+.+||...|...|..++.++.
T Consensus 342 ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp~----~i~~I~~eL~~~l~~~G~~si~e~i 404 (409)
T PLN02826 342 IPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGPA----LIPRIKAELAACLERDGFKSIQEAV 404 (409)
T ss_pred CcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCHH----HHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 5899999999999999999999999999998886 4653 5566778888888888888887753
No 41
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.44 E-value=1.8e-07 Score=73.52 Aligned_cols=48 Identities=29% Similarity=0.351 Sum_probs=42.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL 48 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i 48 (100)
||||++|||.+|.+++.|++|||+.|.+|+.|+..-.|.-++..++.+
T Consensus 185 iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~~~~K~~l 232 (336)
T COG2070 185 IPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYKQAL 232 (336)
T ss_pred CCEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCCCHHHHHHH
Confidence 699999999999999999999999999999999887776566666655
No 42
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.38 E-value=6.3e-07 Score=68.02 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=51.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+|||+.|||.++.|+.+++..|||+|.+||+++. ++ ..++.+++++...|...|..++.++.
T Consensus 232 ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-----~p----~~~~~i~~~l~~~~~~~g~~~~~~~~ 293 (296)
T cd04740 232 IPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-----DP----EAFKEIIEGLEAYLDEEGIKSIEELV 293 (296)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-----Ch----HHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 5899999999999999999999999999999884 33 24456677777777778877777653
No 43
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.37 E-value=8.1e-07 Score=67.74 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=52.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+||++.|||+|+.|+.+.++.|||+|.+||+++. ++ ..++.++++++..|-..|..++.++.
T Consensus 235 ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-----~P----~~~~~i~~~l~~~~~~~g~~~i~~~~ 296 (301)
T PRK07259 235 IPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-----DP----YAFPKIIEGLEAYLDKYGIKSIEEIV 296 (301)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-----Cc----HHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 6899999999999999999999999999999884 33 44566778888888888888887754
No 44
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=98.35 E-value=1.7e-06 Score=66.87 Aligned_cols=63 Identities=24% Similarity=0.337 Sum_probs=52.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+|||+.|||.|+.|+++.+..||++|.+++.+++ .|++ .+..+.+||+..|.-.|..++.++.
T Consensus 242 ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~----~gp~----~~~~i~~~L~~~l~~~g~~si~e~~ 304 (310)
T PRK02506 242 IQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK----EGPA----VFERLTKELKAIMAEKGYQSLEDFR 304 (310)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH----hChH----HHHHHHHHHHHHHHHhCCCCHHHHh
Confidence 5899999999999999999999999999999885 3443 4456677888888888888888764
No 45
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.31 E-value=3.8e-07 Score=70.87 Aligned_cols=49 Identities=29% Similarity=0.332 Sum_probs=38.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQ 49 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~ 49 (100)
+|||+.|||.++.+++.||+||||.|.+|+.|+.+-.+.-++..++.+-
T Consensus 191 iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~~l~ 239 (330)
T PF03060_consen 191 IPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASDAYKQALV 239 (330)
T ss_dssp S-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHHHHH
T ss_pred CcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccccChHHHHHHHH
Confidence 6999999999999999999999999999999998777766666666653
No 46
>KOG0399|consensus
Probab=98.26 E-value=4.3e-07 Score=80.94 Aligned_cols=87 Identities=24% Similarity=0.198 Sum_probs=72.6
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------CHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------GSNGAARVLQSLVHKILPEAVADKVHNAYSIFF 72 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~ 72 (100)
-+-.||++|||.||+-|-+||||..++++..|.+++|. ++-|++++.+.|+..+. -...-+.|++--..
T Consensus 1171 VlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~--G~PehvVNff~yva 1248 (2142)
T KOG0399|consen 1171 VLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFP--GQPEHVVNFFFYVA 1248 (2142)
T ss_pred EEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCC--CCcHHHHHHHHHHH
Confidence 36789999999999999999999999999999999883 67888888888777664 23345678888888
Q ss_pred HHHHHHHHHcCcCCCCCC
Q psy7649 73 LELNNLVPTLLLGSIQPP 90 (100)
Q Consensus 73 ~e~~e~~~~lG~~s~~~~ 90 (100)
+|++.+|..+|++++.++
T Consensus 1249 EEvR~imakLGfrtldem 1266 (2142)
T KOG0399|consen 1249 EEVRGIMAKLGFRTLDEM 1266 (2142)
T ss_pred HHHHHHHHHhCcchHHHH
Confidence 999999999999877644
No 47
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.25 E-value=8.2e-07 Score=68.71 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=41.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL 48 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i 48 (100)
+|||++|||.++.|+.+++++|||.|.+|+.|+..-.+.-++..++.+
T Consensus 162 iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~Es~~~~~~k~~l 209 (307)
T TIGR03151 162 IPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKECNVHPNYKEKV 209 (307)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccccCCCHHHHHHH
Confidence 689999999999999999999999999999999887765555555554
No 48
>KOG2550|consensus
Probab=98.08 E-value=1.1e-06 Score=71.36 Aligned_cols=33 Identities=39% Similarity=0.561 Sum_probs=30.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|+|+||||++..||+|||+|||+.|+||..+-
T Consensus 355 vpviADGGiq~~Ghi~KAl~lGAstVMmG~lLA 387 (503)
T KOG2550|consen 355 VPCIADGGIQNVGHVVKALGLGASTVMMGGLLA 387 (503)
T ss_pred CceeecCCcCccchhHhhhhcCchhheecceee
Confidence 689999999999999999999999999997553
No 49
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.07 E-value=2.6e-06 Score=68.90 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=41.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL 48 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i 48 (100)
+||++.|||-||.+++.|++||||+|.+|+.|+-.-.+.-++.+++.+
T Consensus 220 ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~~L 267 (418)
T cd04742 220 IRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKDLL 267 (418)
T ss_pred ceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHHHH
Confidence 589999999999999999999999999999999876665556666665
No 50
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=98.05 E-value=3.1e-06 Score=68.89 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=42.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL 48 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i 48 (100)
|||++.|||-||.+++.|++||||.|.+|+.|+-.-.+.-++.+++.+
T Consensus 225 VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Esgas~~~K~~L 272 (444)
T TIGR02814 225 IRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEAGTSDNVKKLL 272 (444)
T ss_pred ceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccccCCHHHHHHH
Confidence 589999999999999999999999999999999877766667777766
No 51
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.93 E-value=3.1e-05 Score=60.65 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=32.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+||+++|||+|+.|+.+.+..|||+|.+||++++
T Consensus 290 ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~ 323 (344)
T PRK05286 290 LPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY 323 (344)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999874
No 52
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=97.91 E-value=1.3e-05 Score=60.98 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=30.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|||++|||.|+.|+.+.+..||++|.+++.+++
T Consensus 245 i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~ 278 (295)
T PF01180_consen 245 IPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIY 278 (295)
T ss_dssp SEEEEESS--SHHHHHHHHHHTESEEEESHHHHH
T ss_pred eEEEEeCCcCCHHHHHHHHHhCCCHheechhhhh
Confidence 5899999999999999999999999999998876
No 53
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.90 E-value=1.1e-05 Score=60.75 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=32.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+||++.|||+|+.|+.++++.|||+|++||+++.
T Consensus 244 ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 244 IPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred CCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 5899999999999999999999999999999884
No 54
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.84 E-value=1.1e-05 Score=58.76 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=43.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQ 49 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~ 49 (100)
+|+++.|||+++.|+.+++..|||.|.+|+.++....+.+...+.+.+.
T Consensus 157 ~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~~~~~~~~~ 205 (236)
T cd04730 157 IPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASPAYKQALL 205 (236)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccCCCHHHHHHHH
Confidence 5899999999999999999999999999999999888777777766654
No 55
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.80 E-value=3.1e-05 Score=61.78 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=48.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+|||++|||.|+.|+++.+..|||+|.+++.+++ .|++ .+..+.++|...|.-.|..++.++.
T Consensus 254 ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~----~gp~----ii~~I~~~L~~~l~~~g~~si~e~i 316 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ----YGFR----IVEDMISGLSHYMDEKGFASLEDMV 316 (420)
T ss_pred CCEEeecCcCCHHHHHHHHHhCCChheeeeeecc----CCch----hHHHHHHHHHHHHHHcCcchHHHHh
Confidence 5899999999999999999999999999998874 3543 2334556666666666666666554
No 56
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=97.79 E-value=2.5e-05 Score=60.69 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=32.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+||+++|||+|+.|+.+.+..|||+|.+||++++
T Consensus 281 ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 281 IPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred CcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 5899999999999999999999999999999974
No 57
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.79 E-value=3.1e-05 Score=62.02 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=51.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+||+..|||.|+.|+++.+.+||++|.+++.+++ .|+. .++.+.++|...|--.|..++.++.
T Consensus 271 ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~----~Gp~----vi~~i~~~L~~~m~~~G~~si~e~~ 333 (385)
T PLN02495 271 RSLSGIGGVETGGDAAEFILLGADTVQVCTGVMM----HGYP----LVKNLCAELQDFMKKHNFSSIEDFR 333 (385)
T ss_pred CcEEEECCCCCHHHHHHHHHhCCCceeEeeeeee----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 5799999999999999999999999999998764 4654 3445667777777788888887765
No 58
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=97.78 E-value=1.1e-05 Score=61.82 Aligned_cols=34 Identities=29% Similarity=0.221 Sum_probs=32.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|||++|||.|+.|+.+.+..|||+|.++|.+++
T Consensus 253 ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 253 LPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred CcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 5899999999999999999999999999998764
No 59
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.75 E-value=8e-05 Score=55.65 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=41.6
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH 53 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~ 53 (100)
+++++|||+|+.|+.+++..|||.+.+|+.++..+..++.+...+.++.++.
T Consensus 187 ~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~~~~~~~ 238 (244)
T PRK13125 187 YLVVGFGLDSPEDARDALSAGADGVVVGTAFIEELEKNGVESALNLLKKIRG 238 (244)
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999877654444555555555544
No 60
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.72 E-value=5.5e-05 Score=58.06 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=32.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|||++|||.|+.|+++.+..|||+|.+++.+++
T Consensus 244 ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 244 IQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 5899999999999999999999999999998875
No 61
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.66 E-value=5.6e-05 Score=55.20 Aligned_cols=34 Identities=35% Similarity=0.364 Sum_probs=31.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++.|||+++.|+.+++++|||.|.+|+.++.
T Consensus 174 iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 174 CPVIAEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 5899999999999999999999999999988753
No 62
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.62 E-value=5.9e-05 Score=57.49 Aligned_cols=44 Identities=30% Similarity=0.374 Sum_probs=35.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARV 47 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~ 47 (100)
+|||++|||.++.|+.+|+.+|||.|.+++.+..+ ..+....+.
T Consensus 176 vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka---~dP~~ma~a 219 (250)
T PRK00208 176 VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVA---GDPVAMARA 219 (250)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCC---CCHHHHHHH
Confidence 58999999999999999999999999999988632 345444443
No 63
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.61 E-value=0.00015 Score=54.99 Aligned_cols=38 Identities=32% Similarity=0.273 Sum_probs=35.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhc
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAH 38 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~ 38 (100)
.||+++|||+|+.|+-++...|||.|.+|+.+...+..
T Consensus 199 ~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~~ 236 (256)
T TIGR00262 199 KPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIEE 236 (256)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHh
Confidence 37899999999999999999999999999999988764
No 64
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=97.61 E-value=3.9e-05 Score=58.45 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=31.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|||++|||.++.|+.+|+.+|||.|.+++.+..
T Consensus 176 vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 176 VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 5899999999999999999999999999998863
No 65
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=97.58 E-value=8.5e-05 Score=58.21 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=32.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|||+.|||.|+.|+.+.+..|||+|.+++.+++
T Consensus 289 ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 289 LPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 5899999999999999999999999999999874
No 66
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=97.55 E-value=6.1e-05 Score=54.65 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=31.9
Q ss_pred CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~ 34 (100)
+||+++|||+++.|+.+++.. |||.|++||+++.
T Consensus 184 ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 184 IPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 589999999999999999999 8999999998873
No 67
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.00016 Score=56.59 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=49.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
+|||..|||.|+.|+++-+..||++|-+++.+++ .|+.= ++.+.++|...|--.|..++.++.
T Consensus 242 ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp~i----~~~I~~~l~~~l~~~g~~si~d~i 304 (310)
T COG0167 242 IPIIGVGGIETGEDALEFILAGASAVQVGTALIY----KGPGI----VKEIIKGLARWLEEKGFESIQDII 304 (310)
T ss_pred CcEEEecCcCcHHHHHHHHHcCCchheeeeeeee----eCchH----HHHHHHHHHHHHHHcCCCCHHHHh
Confidence 6899999999999999999999999999998774 46533 334456666677777777777664
No 68
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=97.39 E-value=0.0001 Score=53.82 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=31.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++.|||+++.|+.+++++|||.|++|+.+..
T Consensus 178 ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 178 IPVIAEGRINSPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 5899999999999999999999999999998764
No 69
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.36 E-value=0.00012 Score=55.10 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=32.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|||+.|||+|+.|+.+.+..|||.|++||..+.
T Consensus 192 ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 192 KIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred CcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 6899999999999999999999999999998774
No 70
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.32 E-value=0.00018 Score=56.51 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=35.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCc--------chHhhhHHHHHHHhc
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGA--------KYVFVGRAALWGLAH 38 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGA--------d~v~ig~~~L~al~~ 38 (100)
+|||+.|||.++..++.+++||| +.|.||+.||.+-.+
T Consensus 166 iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 166 IHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred ccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhh
Confidence 68999999999999999999999 799999999987555
No 71
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.31 E-value=0.00018 Score=53.35 Aligned_cols=33 Identities=30% Similarity=0.290 Sum_probs=30.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|++++|||+|..|+.+...+|||.|.+|+.+.
T Consensus 185 ~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~ 217 (221)
T TIGR00734 185 HPVMLGGGISGVEDLELLKEMGVSAVLVATAVH 217 (221)
T ss_pred CCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhh
Confidence 589999999999999999999999999999875
No 72
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.30 E-value=0.00017 Score=52.64 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=50.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHh-------cccccHHHhhHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVA-------DKVHNAYSIFFL 73 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l-------~g~~n~~~l~~~ 73 (100)
+|++++|||++-.|+-+++.+||+.|.+|+.++. .++-+.+..+.+.+.+-..+-. .|..+.......
T Consensus 75 ~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~-----~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~ 149 (233)
T PRK00748 75 IPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK-----NPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAE 149 (233)
T ss_pred CCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh-----CHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHH
Confidence 5899999999999999999999999999998874 3333444444432222111100 111122233445
Q ss_pred HHHHHHHHcCcC
Q psy7649 74 ELNNLVPTLLLG 85 (100)
Q Consensus 74 e~~e~~~~lG~~ 85 (100)
|+.+.+..+|.+
T Consensus 150 e~~~~~~~~g~~ 161 (233)
T PRK00748 150 DLAKRFEDAGVK 161 (233)
T ss_pred HHHHHHHhcCCC
Confidence 666777776665
No 73
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.28 E-value=0.00023 Score=52.60 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=32.2
Q ss_pred CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALWG 35 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~a 35 (100)
+|++++|||+++.|+.+++.. |||.|.+|+++...
T Consensus 194 ~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~ 229 (243)
T cd04731 194 IPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG 229 (243)
T ss_pred CCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcC
Confidence 589999999999999999998 99999999988753
No 74
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.27 E-value=0.00066 Score=51.66 Aligned_cols=52 Identities=19% Similarity=0.150 Sum_probs=41.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhc--cCHHHHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAH--SGSNGAARVLQSLVH 53 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~--~g~~gv~~~i~~l~~ 53 (100)
+|+++.+||+++.|+.++... ||.|.+|+.++..+.. .+.+.+.++++.++.
T Consensus 201 ~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~~~~~~~~~~~~~~~~l~~ 254 (258)
T PRK13111 201 LPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKIIEENPEALEALAAFVKELKA 254 (258)
T ss_pred CcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 589999999999999999986 9999999999998775 234455555555443
No 75
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.27 E-value=0.0002 Score=52.35 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=32.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|++++|||++..|+.++...|||.|.+|+.++.
T Consensus 190 ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~ 223 (230)
T TIGR00007 190 VPVIASGGVSSIDDLIALKKLGVYGVIVGKALYE 223 (230)
T ss_pred CCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 5899999999999999999999999999998875
No 76
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.22 E-value=0.00026 Score=51.65 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=32.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++.|||++..|+.+++..|||.|.+|+.++.
T Consensus 191 ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~ 224 (234)
T cd04732 191 IPVIASGGVSSLDDIKALKELGVAGVIVGKALYE 224 (234)
T ss_pred CCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 5899999999999999999999999999998864
No 77
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.20 E-value=0.0004 Score=51.77 Aligned_cols=79 Identities=23% Similarity=0.180 Sum_probs=52.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhH-------HHHhcccccHHHhhHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILP-------EAVADKVHNAYSIFFL 73 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~-------~m~l~g~~n~~~l~~~ 73 (100)
+|+.++|||||..|+-+.+.+||+-|.+|+..+. .++=+.+..+.+.+++.. .....|..+ ......
T Consensus 76 ~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~-----~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~-~~~~~~ 149 (241)
T PRK14024 76 VKVELSGGIRDDESLEAALATGCARVNIGTAALE-----NPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTR-DGGDLW 149 (241)
T ss_pred CCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC-----CHHHHHHHHHHhhhhEEEEEEEeccEeccCCeee-cCccHH
Confidence 5899999999999999999999999999987763 455555555555444311 111123322 223335
Q ss_pred HHHHHHHHcCcC
Q psy7649 74 ELNNLVPTLLLG 85 (100)
Q Consensus 74 e~~e~~~~lG~~ 85 (100)
++...+..+|.+
T Consensus 150 ~~~~~l~~~G~~ 161 (241)
T PRK14024 150 EVLERLDSAGCS 161 (241)
T ss_pred HHHHHHHhcCCC
Confidence 666667777766
No 78
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.14 E-value=0.00031 Score=54.13 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=31.5
Q ss_pred CeEEEcCCCCChHHHHHHH-HhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAI-GLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAl-ALGAd~v~ig~~~L~ 34 (100)
+||++.|||.++.|+.+++ ..|||.|++||+++.
T Consensus 193 ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 193 IPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred CcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 5899999999999999999 678999999999884
No 79
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.13 E-value=0.0015 Score=49.93 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=41.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL 56 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~ 56 (100)
.|+.+++||+++.|+.+....|||.|.+|+.++..+.....+...+.+..+.++++
T Consensus 203 ~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~~~~~~~~~~~~~~~~~~~~ 258 (263)
T CHL00200 203 KPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILLGSSPEKGLDQLSEFCKVAK 258 (263)
T ss_pred CCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999988764332222333444444443
No 80
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.13 E-value=0.00015 Score=54.69 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=32.7
Q ss_pred CeEEEcCCCCChHHHHHHH-HhCcchHhhhHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAI-GLGAKYVFVGRAALWG 35 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAl-ALGAd~v~ig~~~L~a 35 (100)
+|||++|||++..|+.+++ ..|+|.|.+|++|.+.
T Consensus 197 ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 197 IPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred CCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 6899999999999999999 8999999999998873
No 81
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.10 E-value=0.00017 Score=55.39 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=31.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+||++|+||.++.|+.+|+.||||.|++.+.+..
T Consensus 190 vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIak 223 (267)
T CHL00162 190 IPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQ 223 (267)
T ss_pred CcEEEeCCcCCHHHHHHHHHcCCCEEeecceeec
Confidence 5899999999999999999999999999988774
No 82
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.09 E-value=0.00029 Score=53.56 Aligned_cols=33 Identities=36% Similarity=0.478 Sum_probs=26.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|||+|+||.++.|++.|+.||||+|.+-+.+-
T Consensus 176 vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 176 VPVIVDAGIGTPSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp SSBEEES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence 689999999999999999999999999988774
No 83
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.08 E-value=0.00041 Score=50.65 Aligned_cols=35 Identities=37% Similarity=0.493 Sum_probs=32.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALWG 35 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~a 35 (100)
+|++++|||+|..|+.+.+..| ||.|.+|+.++..
T Consensus 191 ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 191 IPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 5899999999999999999999 9999999998753
No 84
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.08 E-value=0.00041 Score=52.00 Aligned_cols=34 Identities=32% Similarity=0.372 Sum_probs=31.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+||+++||||+..|+.+++.+||+.|.+|+.++.
T Consensus 75 ~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 75 IPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 5899999999999999999999999999998874
No 85
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.08 E-value=0.00066 Score=53.27 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=32.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+||++.|||+++.++.++++-|||+|++||+++.
T Consensus 285 iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 285 LPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 5899999999999999999999999999999984
No 86
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.05 E-value=0.00045 Score=51.32 Aligned_cols=34 Identities=29% Similarity=0.237 Sum_probs=31.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|++++|||+|..|+.+.+.+||+.|.+|+.+..
T Consensus 190 ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 190 IPVIAAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 5899999999999999999999999999998754
No 87
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.04 E-value=0.00021 Score=56.29 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=31.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+||++|+||.++.|+.+|+.||||.|.+.+.+.
T Consensus 250 vpVivdAGIg~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 250 VPVLVDAGVGTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEEEcceec
Confidence 689999999999999999999999999998775
No 88
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.02 E-value=0.00048 Score=51.35 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=31.4
Q ss_pred CeEEEcCCCCChHHHHHHHHh---CcchHhhhHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGL---GAKYVFVGRAALWG 35 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlAL---GAd~v~ig~~~L~a 35 (100)
+||+++|||+|..|+.++..+ |+|.|.+|+.++..
T Consensus 191 ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g 228 (241)
T PRK14024 191 APVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAG 228 (241)
T ss_pred CCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcC
Confidence 689999999999999998765 99999999988753
No 89
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=97.00 E-value=0.00033 Score=52.36 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=29.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~ 31 (100)
+|||+.|||.|+.|+.+.+..|||.|++||+
T Consensus 192 ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 192 LFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred CEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 6899999999999999999999999999997
No 90
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.00 E-value=0.00046 Score=51.41 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=31.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+|++|||++..|+.++..+|++.|.+|+.+..
T Consensus 183 ~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~ 216 (228)
T PRK04128 183 EEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYE 216 (228)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhc
Confidence 5899999999999999999999999999988743
No 91
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.99 E-value=0.00056 Score=51.09 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=31.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|++++|||++..|+.+++.+|++.|.+|+.+..
T Consensus 193 ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 193 IPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 5899999999999999999999999999988764
No 92
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.98 E-value=0.0006 Score=50.26 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=27.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|||+-|+|.+|.++.+|+.+||++|.+|+.+-.
T Consensus 145 ~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 145 VPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp SEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred CcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC
Confidence 5899999999999999999999999999987754
No 93
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.97 E-value=0.00058 Score=53.35 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=30.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|||++|||+|+.|+.++++ |||.|++||+++.
T Consensus 206 iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~ 238 (333)
T PRK11815 206 LTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYH 238 (333)
T ss_pred CeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHh
Confidence 68999999999999999998 8999999999874
No 94
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.97 E-value=0.00059 Score=50.90 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=32.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|++++|||+|..|+.+++..||+.|.+|+.++.
T Consensus 75 ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 75 IPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred CCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 5899999999999999999999999999998874
No 95
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.93 E-value=0.00067 Score=49.30 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=31.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++.|||.++.|+.+.+.+|||.|.+|+.++.
T Consensus 173 ~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 173 VILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred CEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 4899999999999999999999999999998874
No 96
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.92 E-value=0.0012 Score=48.67 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=31.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|++++|||++..|+.+.+..||+.|.+|+.++
T Consensus 72 ~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~ 104 (243)
T cd04731 72 IPLTVGGGIRSLEDARRLLRAGADKVSINSAAV 104 (243)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCceEEECchhh
Confidence 589999999999999999999999999998777
No 97
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.91 E-value=0.00066 Score=52.80 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=31.0
Q ss_pred CeEEEcCCCCChHHHHHHHH-hCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIG-LGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlA-LGAd~v~ig~~~L 33 (100)
+|||++|||+|+.|+.+++. .|||.|++||.++
T Consensus 195 iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l 228 (321)
T PRK10415 195 IPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 (321)
T ss_pred CcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhh
Confidence 68999999999999999997 6999999999887
No 98
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.90 E-value=0.00073 Score=49.70 Aligned_cols=34 Identities=29% Similarity=0.266 Sum_probs=31.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++.|||++..|+.+...+||+.|.+|+.++.
T Consensus 194 iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 194 IPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 5899999999999999999999999999998864
No 99
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.90 E-value=0.00081 Score=51.46 Aligned_cols=34 Identities=32% Similarity=0.294 Sum_probs=32.0
Q ss_pred CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~ 34 (100)
+||++.|||+++.|+.+++.. |||+|++||+++.
T Consensus 282 iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 282 IPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred CCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 589999999999999999999 7999999999983
No 100
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.90 E-value=0.00079 Score=50.45 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=31.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~ 34 (100)
+||+++|||+++.|+.+++..| +|.|.+|+.+..
T Consensus 200 ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 200 IPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 5899999999999999999999 999999988753
No 101
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.89 E-value=0.00065 Score=49.84 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=29.5
Q ss_pred CeEEEcCCCCChHHHHH-HHHhCcchHhhhHHH
Q psy7649 1 MEVYLDGGIRYGTDVFK-AIGLGAKYVFVGRAA 32 (100)
Q Consensus 1 i~liasGGIr~g~Di~K-AlALGAd~v~ig~~~ 32 (100)
+||+++|||++..|+.+ ....|||.|.+|++|
T Consensus 198 ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 198 IPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 58999999999999999 667999999999876
No 102
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.86 E-value=0.0021 Score=48.04 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=40.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHK 54 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~e 54 (100)
+||.++|||+++.++.+.... ||.+.+|+.+...+...+.+...+.++.+.+.
T Consensus 188 ~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~~~~~~~~~~~~~~~~~~~ 240 (242)
T cd04724 188 LPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIEEGGEEEALEALKELAES 240 (242)
T ss_pred CcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHHHhccchhHHHHHHHHHHH
Confidence 489999999999999999999 99999999999887654333333444444433
No 103
>PLN02591 tryptophan synthase
Probab=96.85 E-value=0.0032 Score=47.85 Aligned_cols=55 Identities=24% Similarity=0.281 Sum_probs=41.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc-CHHHHHHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS-GSNGAARVLQSLVHKI 55 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~-g~~gv~~~i~~l~~el 55 (100)
+|+++.-||+++.|+.+.+..|||.|.+|+.++..+... .++...+.+..+.+++
T Consensus 190 ~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~~~~~~~~~~~~~~~~~~~l 245 (250)
T PLN02591 190 KPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALGEAKSPEEGLKRLEKLAKSL 245 (250)
T ss_pred CceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhhhccChhHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999877542 2323333344444444
No 104
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.80 E-value=0.00058 Score=51.50 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=28.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+++|+.|||||+.++.+++..|||.|.+|+.|=
T Consensus 183 ~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~ie 215 (230)
T PF01884_consen 183 IPLIVGGGIRSPEQAREMAEAGADTIVVGNAIE 215 (230)
T ss_dssp SEEEEESS--SHHHHHHHHCTTSSEEEESCHHH
T ss_pred ccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEE
Confidence 489999999999999999999999999998774
No 105
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.78 E-value=0.00095 Score=52.10 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=30.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|||+.|||+|..|+.+.+. |||.|++||.++.
T Consensus 196 ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~ 228 (318)
T TIGR00742 196 LTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYE 228 (318)
T ss_pred CcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh
Confidence 68999999999999999997 9999999998875
No 106
>KOG1436|consensus
Probab=96.70 E-value=0.0054 Score=48.91 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=51.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF 71 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~ 71 (100)
||||-.|||.||.|..+=+..||++|-+.+.+-+ +|+ ..++..+.|+...|...|-.++.+..
T Consensus 332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp----~i~~kIk~El~~ll~~kG~t~v~d~i 394 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGP----AIIEKIKRELSALLKAKGFTSVDDAI 394 (398)
T ss_pred CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCc----hhHHHHHHHHHHHHHhcCCCcHHHhc
Confidence 7999999999999999999999999999887654 454 23456777888888888887776653
No 107
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.65 E-value=0.0015 Score=48.73 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=31.0
Q ss_pred CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~ 34 (100)
+|++++|||++..|+.+++.. |++.|.+|+.+..
T Consensus 198 ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 198 VPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred CCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 589999999999999999975 9999999988764
No 108
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.64 E-value=0.0013 Score=47.96 Aligned_cols=33 Identities=36% Similarity=0.595 Sum_probs=31.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|++++|||++..|+-+.+..|||.|.+|+..+
T Consensus 74 ~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l 106 (234)
T cd04732 74 IPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CCEEEeCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 589999999999999999999999999999876
No 109
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.55 E-value=0.0019 Score=51.33 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=31.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+||++.|||+++.++-++|+-| ||+|++||+++
T Consensus 306 ~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~l 339 (382)
T cd02931 306 VPVIMAGRMEDPELASEAINEGIADMISLGRPLL 339 (382)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhH
Confidence 5899999999999999999987 99999999988
No 110
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.54 E-value=0.0014 Score=48.85 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=30.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|++++|||||-.|+-+.+.+||+-|.+|+..+
T Consensus 74 ~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 74 LKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 589999999999999999999999999997654
No 111
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=96.53 E-value=0.002 Score=47.80 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=29.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|++++|||++..|+.++...|++.|.+|+.+.
T Consensus 192 ~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~ 224 (229)
T PF00977_consen 192 IPVIASGGVRSLEDLRELKKAGIDGVIVGSALH 224 (229)
T ss_dssp SEEEEESS--SHHHHHHHHHTTECEEEESHHHH
T ss_pred CCEEEecCCCCHHHHHHHHHCCCcEEEEehHhh
Confidence 589999999999999999999999999999874
No 112
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.51 E-value=0.0023 Score=50.17 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=31.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+||++.|+|+++.++-+++.-| ||+|++||+++
T Consensus 286 ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~l 319 (343)
T cd04734 286 LPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHI 319 (343)
T ss_pred CCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhH
Confidence 5899999999999999999987 99999999998
No 113
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=96.47 E-value=0.0035 Score=49.20 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=31.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+||++.|+|+++.++.++|+-| ||+|++||+++
T Consensus 276 ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~i 309 (337)
T PRK13523 276 IATGAVGLITSGAQAEEILQNNRADLIFIGRELL 309 (337)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHH
Confidence 5899999999999999999988 99999999998
No 114
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=96.46 E-value=0.0047 Score=48.17 Aligned_cols=34 Identities=35% Similarity=0.451 Sum_probs=31.6
Q ss_pred CeEE--EcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVY--LDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~li--asGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+||+ +.|||.|+.|+.+++.+|||.|.+|+.+..
T Consensus 204 iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 204 LPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 5787 999999999999999999999999998874
No 115
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.44 E-value=0.0034 Score=44.81 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=29.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+||+++||| +..++.++++.||+.|.+|+.+.
T Consensus 161 ~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~ 192 (212)
T PRK00043 161 IPIVAIGGI-TPENAPEVLEAGADGVAVVSAIT 192 (212)
T ss_pred CCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhh
Confidence 589999999 79999999999999999998865
No 116
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=96.39 E-value=0.0025 Score=50.79 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=31.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+|+++.|+|+++..+-++++-| ||+|++||+||
T Consensus 289 ~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~l 322 (363)
T COG1902 289 IPVIAVGGINDPEQAEEILASGRADLVAMGRPFL 322 (363)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhh
Confidence 5899999999999999999998 99999999998
No 117
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.38 E-value=0.0029 Score=49.23 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=31.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+||+++|+|.+..++.++++-| ||+|++||+++
T Consensus 293 iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~i 326 (338)
T cd04733 293 TPLMVTGGFRTRAAMEQALASGAVDGIGLARPLA 326 (338)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhh
Confidence 5899999999999999999998 89999999997
No 118
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.34 E-value=0.0039 Score=48.41 Aligned_cols=34 Identities=26% Similarity=0.225 Sum_probs=32.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~ 34 (100)
+||++.|+|.++.|+.+++.-| ||+|++||+++.
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 5899999999999999999999 999999999983
No 119
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=96.32 E-value=0.0033 Score=49.78 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=31.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+||++.|+|+++.++-+++.-| ||+|++||+++
T Consensus 290 ~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~l 323 (370)
T cd02929 290 KPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSI 323 (370)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhh
Confidence 5899999999999999999988 99999999998
No 120
>PRK07695 transcriptional regulator TenI; Provisional
Probab=96.24 E-value=0.0073 Score=43.48 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=30.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++.||| ++.++..++..||+.|.+++.+..
T Consensus 150 ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 150 IPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred CCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 589999999 999999999999999999998874
No 121
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.23 E-value=0.0065 Score=45.35 Aligned_cols=33 Identities=24% Similarity=0.569 Sum_probs=30.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|+.++|||||-.|+-+.+.+||+-|.+|+..+
T Consensus 77 ~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 77 KDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred CeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 589999999999999999999999999998765
No 122
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.19 E-value=0.004 Score=45.77 Aligned_cols=33 Identities=39% Similarity=0.609 Sum_probs=30.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|++++|||++..|+-+++.+|||.|.+|+..+
T Consensus 77 ~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 77 VPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred CcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 589999999999999999999999999998775
No 123
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=96.18 E-value=0.0036 Score=46.87 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=31.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++.|||||+.++-+++..|||.|.+|+.+..
T Consensus 176 ~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 176 TPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 4899999999999999999999999999987763
No 124
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=96.13 E-value=0.0043 Score=46.77 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=30.7
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
|+++.||||+..++-+++..|||.|.+|+.+.
T Consensus 186 pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~ 217 (232)
T PRK04169 186 PLIYGGGIRSPEQARELMAAGADTIVVGNIIE 217 (232)
T ss_pred cEEEECCCCCHHHHHHHHHhCCCEEEEChHHh
Confidence 89999999999999999999999999999886
No 125
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.13 E-value=0.0082 Score=46.73 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=31.6
Q ss_pred CeEE--EcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVY--LDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~li--asGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+||+ +-|||.|+.|+.+++.+|||.|.+|+.+..
T Consensus 198 iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 198 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred CCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 5787 999999999999999999999999998874
No 126
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.12 E-value=0.0039 Score=46.92 Aligned_cols=33 Identities=39% Similarity=0.534 Sum_probs=30.2
Q ss_pred CeEEEcCCCCChHHHHHHHHh-----C-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGL-----G-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlAL-----G-Ad~v~ig~~~L 33 (100)
+||++|||+++..|+.++..+ | ++.|.+|+.+.
T Consensus 189 ~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~ 227 (241)
T PRK14114 189 VKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFL 227 (241)
T ss_pred CCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHH
Confidence 589999999999999999998 6 99999998864
No 127
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.0048 Score=47.16 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=31.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
+|||+|-||-++.|.+-|+-||+|+|.+-+++-.+
T Consensus 183 VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A 217 (262)
T COG2022 183 VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARA 217 (262)
T ss_pred CCEEEeCCCCChhHHHHHHhcccceeehhhHhhcc
Confidence 69999999999999999999999999998877543
No 128
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.07 E-value=0.0043 Score=48.28 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=31.0
Q ss_pred CeEEEcCCCCChHHHHHHHH-hCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIG-LGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlA-LGAd~v~ig~~~L~ 34 (100)
+||++.|+|.|+.|+.+.+. -|||.|++||.++.
T Consensus 195 iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 195 IPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred CcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 68999999999999999995 68999999998774
No 129
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.03 E-value=0.011 Score=46.01 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=31.5
Q ss_pred CeEE--EcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVY--LDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~li--asGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+||+ +.|||.|+.|+.+++.+||+.|.+|+.+..
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 5776 999999999999999999999999998874
No 130
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=96.03 E-value=0.012 Score=43.01 Aligned_cols=34 Identities=41% Similarity=0.539 Sum_probs=30.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|++++|||++..|+-+++..|||.|.+|+..+.
T Consensus 73 ~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 73 VPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred CCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 4899999999999999999999999999877663
No 131
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=96.02 E-value=0.0059 Score=45.23 Aligned_cols=33 Identities=33% Similarity=0.525 Sum_probs=29.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|+.++||||+..|+-+.+.+||+-|.+|+..+
T Consensus 74 ~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~ 106 (229)
T PF00977_consen 74 IPIQVGGGIRSIEDAERLLDAGADRVVIGTEAL 106 (229)
T ss_dssp SEEEEESSE-SHHHHHHHHHTT-SEEEESHHHH
T ss_pred ccEEEeCccCcHHHHHHHHHhCCCEEEeChHHh
Confidence 589999999999999999999999999999766
No 132
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=96.01 E-value=0.0085 Score=46.92 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=31.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+||++.|+|+++.|+-+++.-| +|+|++||+++
T Consensus 277 iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l 310 (353)
T cd02930 277 IPVIASNRINTPEVAERLLADGDADMVSMARPFL 310 (353)
T ss_pred CCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHH
Confidence 5899999999999999999987 99999999998
No 133
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=96.00 E-value=0.0051 Score=48.02 Aligned_cols=33 Identities=39% Similarity=0.447 Sum_probs=31.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+||++.|||+++..+.++++-| ||+|++||+++
T Consensus 292 ~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~l 325 (341)
T PF00724_consen 292 IPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLL 325 (341)
T ss_dssp SEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHH
T ss_pred ceEEEEeeecchhhhHHHHhcCCceEeeccHHHH
Confidence 5899999999999999999999 99999999998
No 134
>PRK04302 triosephosphate isomerase; Provisional
Probab=95.99 E-value=0.0041 Score=45.75 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=32.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
+|+++.|||+++.|+..++..|||.|.+|+.++.+
T Consensus 174 ~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 174 VKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 48999999999999999999999999999999854
No 135
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=95.98 E-value=0.0053 Score=46.09 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=30.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++.|||||..|+-+++..|||.|.+|+.+..
T Consensus 180 ~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 180 ARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred CCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 4899999999999999999999999999987753
No 136
>PLN02334 ribulose-phosphate 3-epimerase
Probab=95.92 E-value=0.01 Score=43.71 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=39.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAV 60 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~ 60 (100)
+|+.++||| |..++.+....|||.+.+|+.+.. ... ..+.++.++++++..|.
T Consensus 175 ~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~---~~d---~~~~~~~l~~~~~~~~~ 227 (229)
T PLN02334 175 LDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFG---APD---YAEVISGLRASVEKAAV 227 (229)
T ss_pred CcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhC---CCC---HHHHHHHHHHHHHHhhc
Confidence 378999999 789999999999999999998653 222 44555566666665543
No 137
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=95.89 E-value=0.0061 Score=47.79 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=30.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+||++.|||+ +.++.++++-| ||+|++||+++
T Consensus 286 ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~l 318 (338)
T cd02933 286 GPLIAAGGYD-AESAEAALADGKADLVAFGRPFI 318 (338)
T ss_pred CCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhh
Confidence 5899999997 99999999987 99999999987
No 138
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.88 E-value=0.0057 Score=45.76 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=29.6
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+++++|||++-.|+.+...+|++.|.+|+++.
T Consensus 191 ~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly 222 (232)
T PRK13586 191 LKEYAGGVSSDADLEYLKNVGFDYIIVGMAFY 222 (232)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEehhhh
Confidence 58999999999999999999999999998764
No 139
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=95.84 E-value=0.0068 Score=45.60 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=28.5
Q ss_pred CeEEEcCCCCChHHHHHHH---HhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAI---GLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAl---ALGAd~v~ig~~~L 33 (100)
+||+++||++|..|+.+.- ..|++.|.+|+.+.
T Consensus 194 ~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~ 229 (243)
T TIGR01919 194 AIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLY 229 (243)
T ss_pred CCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHH
Confidence 5899999999999998764 45999999998764
No 140
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.49 E-value=0.025 Score=42.57 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=30.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|++++|||++-.|+.+.+.+|++.|.+|+..+
T Consensus 75 ~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~ 107 (258)
T PRK01033 75 MPLCYGGGIKTLEQAKKIFSLGVEKVSINTAAL 107 (258)
T ss_pred CCEEECCCCCCHHHHHHHHHCCCCEEEEChHHh
Confidence 589999999999999999999999999997654
No 141
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.45 E-value=0.011 Score=44.79 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=31.5
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
++|+-|||.|+.|+.+++.+|||.|.+|+.++.+
T Consensus 213 ~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 213 LVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred EEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 6899999999999999999999999999998853
No 142
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=95.40 E-value=0.013 Score=40.75 Aligned_cols=33 Identities=27% Similarity=0.183 Sum_probs=29.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|++++||| +..++-..+..|||.+.+|+.+..
T Consensus 151 ~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~ 183 (196)
T cd00564 151 IPVVAIGGI-TPENAAEVLAAGADGVAVISAITG 183 (196)
T ss_pred CCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 579999999 578999999999999999998763
No 143
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=95.39 E-value=0.013 Score=43.68 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=28.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~ 32 (100)
++|.++|||||..|+..-+.+||+.+|.+...
T Consensus 180 ~~IKasGGIrt~~~a~~~i~aGA~riGtS~~~ 211 (221)
T PRK00507 180 VGVKASGGIRTLEDALAMIEAGATRLGTSAGV 211 (221)
T ss_pred ceEEeeCCcCCHHHHHHHHHcCcceEccCcHH
Confidence 46899999999999999999999999886543
No 144
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=95.36 E-value=0.014 Score=42.83 Aligned_cols=46 Identities=30% Similarity=0.349 Sum_probs=36.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l 51 (100)
+|++++|||++-.|+.+.+..|++.|.+|+..+. .++-+.+..+.+
T Consensus 75 ~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~-----~~~~~~~~~~~~ 120 (232)
T TIGR03572 75 MPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE-----NPDLIEEAARRF 120 (232)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc-----CHHHHHHHHHHc
Confidence 4899999999999999999999999999987653 344444444443
No 145
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.33 E-value=0.0098 Score=42.27 Aligned_cols=32 Identities=34% Similarity=0.434 Sum_probs=29.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|++++|||+ +.++.+++..|||.+.+|+++.
T Consensus 159 ~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 159 VKVAVAGGIT-PDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred CCEEEECCcC-HHHHHHHHhcCCCEEEEeehhc
Confidence 4799999995 8999999999999999999875
No 146
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=95.27 E-value=0.012 Score=44.16 Aligned_cols=33 Identities=33% Similarity=0.287 Sum_probs=30.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|+.++|||||-.|+-+.+.+||+-|.+|+..+
T Consensus 75 ~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 75 VVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred CCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 478999999999999999999999999998765
No 147
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.22 E-value=0.02 Score=44.86 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=30.7
Q ss_pred CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~ 34 (100)
+|||+.|+|.|+.|+.+.|.- |+|.|++||..+.
T Consensus 199 ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 199 IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 689999999999999999995 6999999997754
No 148
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=95.13 E-value=0.025 Score=43.21 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=31.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALWG 35 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~a 35 (100)
||||+|||.-++.|+.-++..| ||++..+..|-+.
T Consensus 200 iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~ 235 (256)
T COG0107 200 IPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFG 235 (256)
T ss_pred CCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcC
Confidence 6999999999999999999999 9999888777553
No 149
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=95.12 E-value=0.014 Score=43.37 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=30.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|+.++||||+-.|+-+.+..||+-|.+|+..+
T Consensus 79 ~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 79 LGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred CCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 589999999999999999999999999998654
No 150
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.05 E-value=0.034 Score=41.61 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=30.0
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
|+.++|||||-.|+-+.+.+||+-|.+|+..+
T Consensus 75 ~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~ 106 (232)
T PRK13586 75 WIQVGGGIRDIEKAKRLLSLDVNALVFSTIVF 106 (232)
T ss_pred CEEEeCCcCCHHHHHHHHHCCCCEEEECchhh
Confidence 78999999999999999999999999998765
No 151
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.99 E-value=0.022 Score=48.92 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=31.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+||++.|+|+++.++-+++.-| ||+|++||+++
T Consensus 688 ~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l 721 (765)
T PRK08255 688 IATIAVGAISEADHVNSIIAAGRADLCALARPHL 721 (765)
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHH
Confidence 5899999999999999999977 99999999998
No 152
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.97 E-value=0.026 Score=44.83 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=30.5
Q ss_pred CeEEEcCCC------------------CChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGI------------------RYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGI------------------r~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+||++.|+| +++.++-+++.-| ||+|++||+++
T Consensus 281 ~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~i 332 (361)
T cd04747 281 LPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALL 332 (361)
T ss_pred CCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHH
Confidence 589999999 5999999999987 99999999987
No 153
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.82 E-value=0.02 Score=43.14 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=30.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|+.++|||||-.|+-+.+.+||+-|.+|+..+
T Consensus 74 ~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 74 EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 378999999999999999999999999998654
No 154
>PLN02411 12-oxophytodienoate reductase
Probab=94.79 E-value=0.023 Score=45.43 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=29.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+||++.|+| ++.+..++++-| ||+|++||+++
T Consensus 314 ~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~i 346 (391)
T PLN02411 314 GTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFI 346 (391)
T ss_pred CCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHH
Confidence 489999999 678888999999 99999999998
No 155
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=94.67 E-value=0.026 Score=44.72 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=29.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L 33 (100)
+||++.|++ ++.++-++++-| ||+|++||+++
T Consensus 293 ~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~i 325 (362)
T PRK10605 293 GVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYI 325 (362)
T ss_pred CCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhh
Confidence 478999986 999999999999 99999999998
No 156
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=94.61 E-value=0.031 Score=39.67 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=29.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++.||| +..++-+.+..|++.|.+++.+..
T Consensus 153 ~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~ 185 (196)
T TIGR00693 153 IPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQ 185 (196)
T ss_pred CCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhC
Confidence 589999999 689999999999999999998874
No 157
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=94.60 E-value=0.027 Score=42.86 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=31.4
Q ss_pred CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~ 34 (100)
+|+++||||++=.|+-+.-.+ |..-|.+|+++..
T Consensus 192 ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 192 IPVIASGGVSSLDDIKALKELSGVEGVIVGRALYE 226 (241)
T ss_pred cCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhc
Confidence 689999999999999999999 8999999998864
No 158
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=94.59 E-value=0.022 Score=43.56 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=30.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+.+.||||+ .|+-+.+.+||+.|.+|+.++.
T Consensus 77 ~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 77 GGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred CCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 57999999998 9999999999999999987763
No 159
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=94.36 E-value=0.016 Score=44.90 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=28.3
Q ss_pred CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~ 34 (100)
+|||+.|+|.|..|+-+.+.. |+|.|++||..+.
T Consensus 184 ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~ 218 (309)
T PF01207_consen 184 IPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG 218 (309)
T ss_dssp SEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred ceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence 699999999999999999988 9999999997753
No 160
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=94.08 E-value=0.083 Score=39.92 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=27.5
Q ss_pred CeEEEcCCCC--ChHHHHHH----HHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIR--YGTDVFKA----IGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr--~g~Di~KA----lALGAd~v~ig~~~L~ 34 (100)
+||.++|||+ |..|+.+. +..||+.+.+|+.+..
T Consensus 197 ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 197 VPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 5899999999 65555544 5999999999988774
No 161
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.96 E-value=0.042 Score=38.97 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=29.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|++++|||.. .++.+++..|||.+.+|+++..
T Consensus 167 ~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 167 LLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred eEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 37899999996 8888999999999999998874
No 162
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=93.77 E-value=0.056 Score=38.42 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=28.3
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
|++++|||+ ..++.+++..|||.+.+|+++..
T Consensus 167 ~i~v~GGI~-~env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 167 LIEVDGGVN-DDNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred eEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 688999995 68888889999999999998863
No 163
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=93.76 E-value=0.19 Score=38.81 Aligned_cols=54 Identities=22% Similarity=0.200 Sum_probs=40.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el 55 (100)
+|+.+.=||+++.|+.+.... ||.|.+|+.+...+..+..+...+.+..+.+++
T Consensus 206 ~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~~i~~~~~~~~~~~~~~l~~~l 259 (265)
T COG0159 206 VPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVKIIEEGLDEEALEELRALVKEL 259 (265)
T ss_pred CCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 478899999999999999999 999999999999988643222233333444444
No 164
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=93.76 E-value=0.14 Score=37.61 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=30.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++.||| +..++..-+..||+.|++++.+..
T Consensus 152 ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 152 VPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred CeEEEECCC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 589999999 889999999999999999988865
No 165
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=93.70 E-value=0.073 Score=39.55 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=35.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el 55 (100)
+++.+||||. ...+-+....|||.+.+|+.+.. ... ..+.++.+++.+
T Consensus 168 ~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~---~~d---~~~~i~~l~~~~ 215 (220)
T PRK08883 168 IRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFG---QPD---YKAVIDEMRAEL 215 (220)
T ss_pred eeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhC---CCC---HHHHHHHHHHHH
Confidence 3688999998 88899999999999999987643 122 455555555543
No 166
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=93.60 E-value=0.082 Score=42.40 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=45.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNLVP 80 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~~e~~~ 80 (100)
+|++++||| +...+..++..|||.+.+|+.+..+ .. ..+..+.+++.++..| .....++.+-...++.+.+.
T Consensus 163 iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~---~d---~~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~~~~~l~ 234 (430)
T PRK07028 163 IPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKS---AD---VTEAARKIREAIDSGK-PVKIDKFKKSLDEEIREIFM 234 (430)
T ss_pred CcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCC---CC---HHHHHHHHHHHHhccC-CccccccccCCCHHHHHHhc
Confidence 589999999 6888999999999999999987642 22 3334444555554422 22233333333344444443
Q ss_pred H
Q psy7649 81 T 81 (100)
Q Consensus 81 ~ 81 (100)
.
T Consensus 235 ~ 235 (430)
T PRK07028 235 Q 235 (430)
T ss_pred C
Confidence 3
No 167
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=93.60 E-value=0.06 Score=41.20 Aligned_cols=34 Identities=32% Similarity=0.384 Sum_probs=31.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
||+-+.||||+-.|+-|-|..|||=|.+-++.+.
T Consensus 75 iPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 75 IPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred eeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 6899999999999999999999999999988764
No 168
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=93.40 E-value=0.049 Score=41.06 Aligned_cols=32 Identities=34% Similarity=0.385 Sum_probs=29.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~ 32 (100)
++||+-|.+.||.+..||+-+||++|.+|+++
T Consensus 181 ~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAI 212 (229)
T COG3010 181 CRVIAEGRYNTPEQAKKAIEIGADAVVVGSAI 212 (229)
T ss_pred CeEEeeCCCCCHHHHHHHHHhCCeEEEECccc
Confidence 47999999999999999999999999999765
No 169
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.40 E-value=0.061 Score=38.52 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=29.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|+++.||| +..++...+..||+.|+++..+.
T Consensus 144 ~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 144 VRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred CeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 589999999 99999999999999999998775
No 170
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=93.35 E-value=0.052 Score=41.41 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=29.6
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
.+++-+||.++.|+.+....|+|+|.+|..++.+
T Consensus 211 ~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 211 IVISESGIKTPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp EEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred eEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 4789999999999999999999999999999864
No 171
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.35 E-value=0.17 Score=37.42 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=37.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH 53 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~ 53 (100)
+|+++.|||. ..++..-++.||+.+++|+.+........-+.+.+..+.+.+
T Consensus 156 ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~ 207 (213)
T PRK06552 156 VNVMVTGGVN-LDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMS 207 (213)
T ss_pred CEEEEECCCC-HHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHH
Confidence 5899999996 688999999999999999988654332222445544444433
No 172
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=93.24 E-value=0.27 Score=37.63 Aligned_cols=49 Identities=29% Similarity=0.304 Sum_probs=36.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l 51 (100)
+|+.+.=||+++.|+.+.. -|||.|.+|+.++..+...++ ...+.++.+
T Consensus 199 ~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~~-~~~~~~~~~ 247 (259)
T PF00290_consen 199 LPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENGD-DAEKFLKEL 247 (259)
T ss_dssp S-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTCC-HHHHHHHHH
T ss_pred cceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHccc-cHHHHHHHH
Confidence 4789999999999997666 999999999999999886442 234444443
No 173
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=93.12 E-value=0.074 Score=40.53 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=59.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhH-------HHHhcccccHHHhhHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILP-------EAVADKVHNAYSIFFL 73 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~-------~m~l~g~~n~~~l~~~ 73 (100)
+||-+.||||+-.++-+.+.+|++-|.+|+.. ...++=+.+..+.+-+++-. .-...|+....++...
T Consensus 76 ~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a-----v~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~ 150 (241)
T COG0106 76 VPVQVGGGIRSLEDVEALLDAGVARVIIGTAA-----VKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELE 150 (241)
T ss_pred CCEEeeCCcCCHHHHHHHHHCCCCEEEEecce-----ecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHH
Confidence 47889999999999999999999999999865 34566677766665422211 1255677777777778
Q ss_pred HHHHHHHHcCcC
Q psy7649 74 ELNNLVPTLLLG 85 (100)
Q Consensus 74 e~~e~~~~lG~~ 85 (100)
++.+.+...|..
T Consensus 151 ~l~~~~~~~g~~ 162 (241)
T COG0106 151 ELAKRLEEVGLA 162 (241)
T ss_pred HHHHHHHhcCCC
Confidence 888888888876
No 174
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=93.09 E-value=0.11 Score=37.22 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=27.5
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+.++|||+. .++.+++..|+|.|.+|+.+..
T Consensus 173 i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 173 IEVDGGINA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred EEEECCCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 679999998 6888888899999999998874
No 175
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=92.99 E-value=0.084 Score=40.38 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=25.1
Q ss_pred CeEEEcCCCCChHHHHHHHHh--CcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGL--GAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlAL--GAd~v~ig~~~L 33 (100)
+|||+|||+.+-.|+.+.-.+ |..-+.+|+.+.
T Consensus 202 ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 202 IPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALD 236 (253)
T ss_pred CCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHH
Confidence 689999999999999988666 433355666544
No 176
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=92.94 E-value=0.1 Score=38.66 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=27.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGR 30 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~ 30 (100)
++|-++|||||..|++.-+.+||+-+|.+.
T Consensus 176 v~IKaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 176 IGVKASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred CeEEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 478999999999999999999999988754
No 177
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=92.91 E-value=0.061 Score=41.36 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=27.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhC--cchHhhhHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG--AKYVFVGRAA 32 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG--Ad~v~ig~~~ 32 (100)
+|||+||||++-.|+.+...+| ...|.+|+++
T Consensus 208 ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 208 IPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 5899999999999999999986 4667788775
No 178
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=92.89 E-value=0.076 Score=37.99 Aligned_cols=32 Identities=34% Similarity=0.399 Sum_probs=27.3
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
++.++||| +..++-..+..|||.+.+|+.+..
T Consensus 160 ~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 160 RVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred cEEEECCc-CHHHHHHHHHcCCCEEEEeehhcC
Confidence 46679999 778888999999999999998653
No 179
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=92.88 E-value=0.16 Score=37.09 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=28.8
Q ss_pred CeEEEcCCC--CChHH----HHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGI--RYGTD----VFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGI--r~g~D----i~KAlALGAd~v~ig~~~L~ 34 (100)
+|++++||+ +|..| +-.++..||+.|.+||.+..
T Consensus 180 ~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 180 VPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred CCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence 578999998 66766 77889999999999998874
No 180
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.72 E-value=0.089 Score=40.50 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=28.7
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
.+.+|||| |+..+.+...+|+|.+.+|.+.-
T Consensus 231 ~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 231 LLEASGNI-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred EEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 58999999 99999999999999999998764
No 181
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=92.42 E-value=0.72 Score=42.97 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=23.6
Q ss_pred eEEE-cCCCCChHHHHHHHHhCcchHh
Q psy7649 2 EVYL-DGGIRYGTDVFKAIGLGAKYVF 27 (100)
Q Consensus 2 ~lia-sGGIr~g~Di~KAlALGAd~v~ 27 (100)
.||+ ||.+|+.-|+++.+.+|||+|.
T Consensus 651 sLIveSGe~RevHhfA~LiGyGA~AV~ 677 (1485)
T PRK11750 651 NIIVETASARDPHHFAVLLGFGATAVY 677 (1485)
T ss_pred eEEEecCCcCCHHHHHHHHhcChhhhh
Confidence 4566 9999999999999999999995
No 182
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=92.12 E-value=0.14 Score=41.41 Aligned_cols=32 Identities=38% Similarity=0.537 Sum_probs=27.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+++.++|||. ..++-.++..|||.+.+||.+.
T Consensus 331 ~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf 362 (391)
T PRK13307 331 ILVAVAGGVR-VENVEEALKAGADILVVGRAIT 362 (391)
T ss_pred CcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 3689999998 7778888999999999999854
No 183
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=92.07 E-value=0.087 Score=40.13 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.5
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~ 32 (100)
++|+.||||++...-+...-|||.+..|+.+
T Consensus 193 ~LivGGGIrs~E~A~~~a~agAD~IVtG~ii 223 (240)
T COG1646 193 PLIVGGGIRSPEQAREMAEAGADTIVTGTII 223 (240)
T ss_pred eEEEcCCcCCHHHHHHHHHcCCCEEEECcee
Confidence 6899999999987755555599999999755
No 184
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.03 E-value=0.062 Score=39.04 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=26.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+|+.|=|++..|+-.||.-||++|.-+.+-||
T Consensus 141 ~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 141 IPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp S-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred CCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 5899999999999999999999999988877665
No 185
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=91.84 E-value=0.29 Score=36.67 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=26.6
Q ss_pred CeEEEcCCCC--ChHHHH----HHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIR--YGTDVF----KAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr--~g~Di~----KAlALGAd~v~ig~~~L~ 34 (100)
+||.+.|||+ +..|++ .++..||+.+.+++.++.
T Consensus 193 iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 193 APVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 5899999999 544444 445899999999988774
No 186
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=91.52 E-value=0.09 Score=44.01 Aligned_cols=34 Identities=9% Similarity=0.001 Sum_probs=29.6
Q ss_pred CeEEEcCCCCChHHHHHHHH-hCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIG-LGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlA-LGAd~v~ig~~~L~ 34 (100)
+|||+|||+.+..|+.+++. -|||++..|..|-+
T Consensus 483 ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~ 517 (538)
T PLN02617 483 IPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR 517 (538)
T ss_pred CCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence 69999999999999999997 56999988876654
No 187
>KOG2335|consensus
Probab=91.28 E-value=0.14 Score=41.05 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=31.5
Q ss_pred CeEEEcCCCCChHHHHHHHH-hCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIG-LGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlA-LGAd~v~ig~~~L~ 34 (100)
+|+++-|+|.+..|+-.++- -|||.|+.|+..|+
T Consensus 204 ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 204 IPVIANGNILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 68999999999999999999 99999999997765
No 188
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=91.20 E-value=0.18 Score=40.12 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=30.4
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
+++-+||+|+.|+......|||+|.+|..++.+
T Consensus 291 ~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 291 VVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred EEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 577799999999999999999999999999864
No 189
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.97 E-value=0.15 Score=36.86 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=28.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|+++.||| |..++..-++.||+.|++++.+.
T Consensus 153 ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 153 IPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred CcEEEeCCC-CHHHHHHHHHCCCeEEEEehhcc
Confidence 589999999 78999999999999999998664
No 190
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=90.92 E-value=0.16 Score=39.03 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=29.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+||-+.||||+ .|+-+.+.+||+-|.+|+..+.
T Consensus 84 ~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 84 GGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred CCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 47889999997 9999999999999999987653
No 191
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=90.89 E-value=0.13 Score=39.63 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=29.2
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
-++.|||.||.|.+-..-||||.|++|.-+.++
T Consensus 211 nFAAGGvATPADAALMM~LGadGVFVGSGIFKS 243 (296)
T COG0214 211 NFAAGGVATPADAALMMQLGADGVFVGSGIFKS 243 (296)
T ss_pred eecccCcCChhHHHHHHHhCCCeEEecccccCC
Confidence 478999999999999999999999999866543
No 192
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=90.59 E-value=0.65 Score=34.22 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=36.1
Q ss_pred EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHH
Q psy7649 4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQ 49 (100)
Q Consensus 4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~ 49 (100)
+...|+||+.++..|+.+|||.|-+.-.++..+.... .+++..+.+
T Consensus 160 il~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~~~v~~F~~ 207 (211)
T cd00956 160 ILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGVEKFLE 207 (211)
T ss_pred EEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHHHHHHHHHH
Confidence 4567899999999999999999999999999887542 344444433
No 193
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=90.59 E-value=0.19 Score=37.19 Aligned_cols=33 Identities=30% Similarity=0.240 Sum_probs=28.0
Q ss_pred CeEEEcCCCCChHHHHHHHH-h-CcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIG-L-GAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlA-L-GAd~v~ig~~~L 33 (100)
+|+.++|||||..|+-+.+. + ||+-|.+|+..+
T Consensus 78 ~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 78 VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 37899999999999988865 2 699999998765
No 194
>KOG1606|consensus
Probab=90.49 E-value=0.43 Score=36.53 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=28.0
Q ss_pred EEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+++||+.||.|.+-.+-||.|.|++|.-+..
T Consensus 213 FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 213 FAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred ecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 7899999999999999999999999976553
No 195
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=90.03 E-value=0.19 Score=43.31 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=31.1
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
.+|+-+||+++.|+.+....|||+|.+|..+|.+
T Consensus 213 ~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 213 IKVAESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred EEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 4678899999999999999999999999988875
No 196
>PRK03903 transaldolase; Provisional
Probab=89.77 E-value=3 Score=32.35 Aligned_cols=71 Identities=8% Similarity=0.089 Sum_probs=51.9
Q ss_pred eEEEcCCCCC----hHHHHHHHHhCcchHhhhHHHHHHHhccC---------HHHHHHHHHHHHH------HHhHHHHhc
Q psy7649 2 EVYLDGGIRY----GTDVFKAIGLGAKYVFVGRAALWGLAHSG---------SNGAARVLQSLVH------KILPEAVAD 62 (100)
Q Consensus 2 ~liasGGIr~----g~Di~KAlALGAd~v~ig~~~L~al~~~g---------~~gv~~~i~~l~~------el~~~m~l~ 62 (100)
.+++|-|+|+ ..++++++..|++.+-+.-..+.++...| .+++..+.+.|.+ ++.....-.
T Consensus 179 iL~AStg~Kn~~~~~~~yv~~L~~g~~v~T~P~~tl~a~~~hg~~~~~~~~~~~~~~~f~~~~~~~gid~~~v~~~L~~e 258 (274)
T PRK03903 179 TLFASTGVKGDDLPKDYYIKELLFKNSINTAPLDTIEAFLKDGNTEPKKPLKIEEIEAFFKELKSHNIDLENTYQKLLKD 258 (274)
T ss_pred EEEEecccCCCCCChHHHHHHHhCCCCeeeCCHHHHHHHHhcCCccCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4789999999 99999999999999999999999987753 4666666665542 233344455
Q ss_pred ccccHHHhhH
Q psy7649 63 KVHNAYSIFF 72 (100)
Q Consensus 63 g~~n~~~l~~ 72 (100)
|++.+.+.+.
T Consensus 259 g~~~F~~af~ 268 (274)
T PRK03903 259 GLEAFKQAFE 268 (274)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 197
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=89.58 E-value=0.24 Score=35.57 Aligned_cols=33 Identities=30% Similarity=0.190 Sum_probs=29.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~ 34 (100)
+|+++.||| |+..+..++..| ++.|-+.+.+..
T Consensus 153 ~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 153 KPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred CCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 589999999 999999999999 999998877653
No 198
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=89.41 E-value=0.25 Score=37.62 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=28.8
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
.+|+-+||+|+.|+.+.... +|+|.+|..++.+
T Consensus 204 ~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 204 VKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred EEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 46788999999999887776 9999999999864
No 199
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=89.30 E-value=0.55 Score=37.38 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=29.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++-||| +..++-+.++.||+.|.+.+.+..
T Consensus 295 iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 295 IPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred CCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhC
Confidence 589999999 588999999999999999998874
No 200
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=88.98 E-value=0.41 Score=36.75 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=31.3
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
.+|+-+||.++.|+.+....|||++.+|..+|..
T Consensus 209 ~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 209 ILISESGISTPEDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred EEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence 4788899999999999999999999999999864
No 201
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=88.91 E-value=0.76 Score=34.09 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=30.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++=||| +..++..++..||+.|.+-+.++.
T Consensus 165 iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 165 IPCIVQAGS-DLASAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred CCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhC
Confidence 689999999 999999999999999999888764
No 202
>PRK12376 putative translaldolase; Provisional
Probab=88.88 E-value=1 Score=34.07 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=38.3
Q ss_pred EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhc-------cCHHHHHHHHHHHH
Q psy7649 4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAH-------SGSNGAARVLQSLV 52 (100)
Q Consensus 4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~-------~g~~gv~~~i~~l~ 52 (100)
|....||++.++.+++..|||.+-+.-.++..+.. ...+++..+.+.|.
T Consensus 174 ILaASiR~~~~v~~a~~~Gad~vTvp~~v~~~l~~~~~~~~~~t~~~v~~F~~Dw~ 229 (236)
T PRK12376 174 LLWASPREVYNIIQADQLGCDIITVTPDVLKKLPLLGKDLEELSLETVKGFAKDAQ 229 (236)
T ss_pred EEEEecCCHHHHHHHHHcCCCEEEcCHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Confidence 34457999999999999999999999888888763 24566666666554
No 203
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=87.79 E-value=0.27 Score=35.51 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=33.5
Q ss_pred EEEcCCCCChH-HHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHh
Q psy7649 3 VYLDGGIRYGT-DVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL 56 (100)
Q Consensus 3 liasGGIr~g~-Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~ 56 (100)
.++||||+... ++-+++..|||.+.+||++..+ .. ..+.++.++++++
T Consensus 165 ~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~---~d---~~~~~~~l~~~~~ 213 (215)
T PRK13813 165 KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNA---AD---PREAAKAINEEIR 213 (215)
T ss_pred EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC---CC---HHHHHHHHHHHHh
Confidence 34899999863 5678888999999999985532 22 4555556666553
No 204
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=87.35 E-value=0.48 Score=36.31 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=27.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~ 32 (100)
+|++++||| +...+..-...|+|.+.++..+
T Consensus 231 i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 231 VLLAAAGGI-NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred ceEEEECCC-CHHHHHHHHHcCCcEEEEChhh
Confidence 589999999 8899999999999999777653
No 205
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=86.90 E-value=1.1 Score=33.23 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=33.5
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHh
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL 56 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~ 56 (100)
.+.+||||+. ..+-.+...|||.+.+|+++.. ...+ .+.++.++++++
T Consensus 175 ~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~---a~d~---~~~~~~i~~~~~ 222 (228)
T PTZ00170 175 NIQVDGGINL-ETIDIAADAGANVIVAGSSIFK---AKDR---KQAIELLRESVQ 222 (228)
T ss_pred eEEECCCCCH-HHHHHHHHcCCCEEEEchHHhC---CCCH---HHHHHHHHHHHH
Confidence 5789999976 4677888899999999998643 2223 444555555544
No 206
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=86.57 E-value=0.39 Score=38.49 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=25.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVG 29 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig 29 (100)
+|||+ |++.+..|+.+++..|||.|.+|
T Consensus 189 IPVI~-G~V~t~e~A~~~~~aGaDgV~~G 216 (369)
T TIGR01304 189 VPVIA-GGVNDYTTALHLMRTGAAGVIVG 216 (369)
T ss_pred CCEEE-eCCCCHHHHHHHHHcCCCEEEEC
Confidence 58887 99999999999999999999755
No 207
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=86.39 E-value=2.2 Score=33.97 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=24.9
Q ss_pred cccccHHHhhHHHHHHHHHHcCcCCCCCC
Q psy7649 62 DKVHNAYSIFFLELNNLVPTLLLGSIQPP 90 (100)
Q Consensus 62 ~g~~n~~~l~~~e~~e~~~~lG~~s~~~~ 90 (100)
.|+.++.+.+..|++.+|..+|++++++.
T Consensus 318 ~gv~~~l~~l~~El~~~m~l~G~~~i~el 346 (351)
T cd04737 318 QGVASVLEHLNKELKIVMQLAGTRTIEDV 346 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHh
Confidence 45678889999999999999999988743
No 208
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=86.19 E-value=0.58 Score=34.43 Aligned_cols=30 Identities=37% Similarity=0.369 Sum_probs=25.6
Q ss_pred EEEcCCC------CChHHHHHHHHhCc--chHhhhHHH
Q psy7649 3 VYLDGGI------RYGTDVFKAIGLGA--KYVFVGRAA 32 (100)
Q Consensus 3 liasGGI------r~g~Di~KAlALGA--d~v~ig~~~ 32 (100)
|.+|||+ ++..++.+.+..|| .-+..||.+
T Consensus 196 Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i 233 (236)
T PF01791_consen 196 VKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNI 233 (236)
T ss_dssp EEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHH
T ss_pred EEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 9999999 99999999999999 555566644
No 209
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=85.64 E-value=0.69 Score=35.06 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=26.5
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~ 32 (100)
.+=+||||||..|+.+.+.+||.-+|.++..
T Consensus 185 gvKaSGGIrt~eda~~~i~aga~RiGtSs~v 215 (228)
T COG0274 185 GVKASGGIRTAEDAKAMIEAGATRIGTSSGV 215 (228)
T ss_pred eeeccCCcCCHHHHHHHHHHhHHHhccccHH
Confidence 3558999999999999999999888877644
No 210
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=85.19 E-value=0.52 Score=37.72 Aligned_cols=29 Identities=31% Similarity=0.364 Sum_probs=26.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGR 30 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~ 30 (100)
+|||+ |+|.|..++.+++..|||+|.+|+
T Consensus 188 ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 188 VPVIV-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred CCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 57888 899999999999999999998874
No 211
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.11 E-value=0.71 Score=35.64 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=28.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|+.++||| |...+......|+|.+.+|.+.-
T Consensus 234 i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 234 AKLEASGGI-NESTLRVIAETGVDYISIGAMTK 265 (277)
T ss_pred CcEEEECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 589999999 68899999999999999997654
No 212
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=85.11 E-value=0.56 Score=38.57 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=28.2
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
.+++-+||+|+.|+.+.. -|||+|.+|..+|.+
T Consensus 212 ~~vseSGI~t~~d~~~~~-~~~davLiG~~lm~~ 244 (454)
T PRK09427 212 IVISESGIYTHAQVRELS-PFANGFLIGSSLMAE 244 (454)
T ss_pred EEEEeCCCCCHHHHHHHH-hcCCEEEECHHHcCC
Confidence 467889999999998864 589999999999864
No 213
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=85.00 E-value=0.73 Score=38.65 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=30.3
Q ss_pred CeEEEcCCCCCh-----------HHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYG-----------TDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g-----------~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+-+.||||+- .|+-+.|..|||-|.+++..+.
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~ 359 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVY 359 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHh
Confidence 689999999998 4588999999999999997765
No 214
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=84.54 E-value=2.7 Score=31.37 Aligned_cols=49 Identities=6% Similarity=0.068 Sum_probs=39.1
Q ss_pred EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHH
Q psy7649 4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLV 52 (100)
Q Consensus 4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~ 52 (100)
+....+|+..++..++..|+|.+-+.-.++..+.... .+++.++.+.|+
T Consensus 162 ILaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw~ 212 (220)
T PRK12655 162 VLAASFKTPRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDWQ 212 (220)
T ss_pred EEEEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4556799999999999999999999999998887532 466666666554
No 215
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=84.09 E-value=3.2 Score=30.82 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=37.7
Q ss_pred EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHH
Q psy7649 4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLV 52 (100)
Q Consensus 4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~ 52 (100)
+....+|+..++..+..+|+|.|-+.-.++..+.... ..++.++-+.|.
T Consensus 160 IlaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~d~~ 210 (213)
T TIGR00875 160 VIAASVRHPRHVLEAALIGADIATMPLDVMQQLFNHPLTDIGLERFLKDWN 210 (213)
T ss_pred EEEeccCCHHHHHHHHHcCCCEEEcCHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4566899999999999999999999999999886432 455555544443
No 216
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=83.78 E-value=0.97 Score=34.44 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=26.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~ 32 (100)
+|+.++||| |...+..-.+.|||.+.+|.++
T Consensus 228 i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 228 VLLEASGGI-TLENIRAYAETGVDVISTGALT 258 (269)
T ss_pred eEEEEECCC-CHHHHHHHHHcCCCEEEEcHHH
Confidence 489999999 5788889999999999987554
No 217
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=83.69 E-value=0.99 Score=34.48 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=27.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~ 32 (100)
+|+.++||| |...+..-...|+|.+.+|.+.
T Consensus 223 ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 223 VLLEASGGI-TLDNLEEYAETGVDVISSGALT 253 (265)
T ss_pred CcEEEECCC-CHHHHHHHHHcCCCEEEeCHHH
Confidence 589999999 6888989999999999997654
No 218
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=83.60 E-value=3.1 Score=31.02 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=37.5
Q ss_pred EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHH
Q psy7649 4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLV 52 (100)
Q Consensus 4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~ 52 (100)
+....+|+..|+..++.+|+|.+-+.-.++..+.... .+++.++.+.|.
T Consensus 162 ILaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw~ 212 (220)
T PRK12653 162 VLAASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQ 212 (220)
T ss_pred EEEEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4556799999999999999999999999999886532 345555544443
No 219
>PRK01362 putative translaldolase; Provisional
Probab=82.97 E-value=4.1 Score=30.29 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=38.4
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHH
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLV 52 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~ 52 (100)
-+....+|+..++..+...|+|.+-+.-.++..+.... .+++.++.+.|.
T Consensus 159 kilaAS~r~~~~v~~~~~~G~d~iTi~~~vl~~l~~~p~t~~~~~~F~~dw~ 210 (214)
T PRK01362 159 EIIAASVRHPMHVLEAALAGADIATIPYKVIKQLFKHPLTDKGLEKFLADWE 210 (214)
T ss_pred EEEEeecCCHHHHHHHHHcCCCEEecCHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35567899999999999999999999999998887532 455555554443
No 220
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=82.69 E-value=2 Score=34.68 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=53.0
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHH----------HHHHHhcc--------------C---HHHHHHHHH-----
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRA----------ALWGLAHS--------------G---SNGAARVLQ----- 49 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~----------~L~al~~~--------------g---~~gv~~~i~----- 49 (100)
||++- ||-+..|+.+|+..|+|.+.++.. .+.+|... | ...+.+.+.
T Consensus 255 pvivK-gV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~ 333 (383)
T cd03332 255 PIVLK-GILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKA 333 (383)
T ss_pred CEEEe-cCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCE
Confidence 55554 889999999999999999876532 11111100 0 001111110
Q ss_pred -----HHHHHHhHHHHhcccccHHHhhHHHHHHHHHHcCcCCCCCC
Q psy7649 50 -----SLVHKILPEAVADKVHNAYSIFFLELNNLVPTLLLGSIQPP 90 (100)
Q Consensus 50 -----~l~~el~~~m~l~g~~n~~~l~~~e~~e~~~~lG~~s~~~~ 90 (100)
-+...+. .-.-.|+.++.+.+..|++..|..+|..++.+.
T Consensus 334 v~iGr~~l~~l~-~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l 378 (383)
T cd03332 334 VLIGRPYAYGLA-LGGEDGVEHVLRNLLAELDLTMGLAGIRSIAEL 378 (383)
T ss_pred EEEcHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHh
Confidence 0011110 123457889999999999999999999988743
No 221
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.55 E-value=1.1 Score=34.83 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=28.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+++.++||| |...+..-.+.|+|.+.+|.+..
T Consensus 244 i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 244 VKIEASGNI-TLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred eEEEEECCC-CHHHHHHHHHcCCCEEEEchhhh
Confidence 479999999 78999999999999999998765
No 222
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=82.40 E-value=3 Score=28.32 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.1
Q ss_pred EEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649 4 YLDGGIRYGTDVFKAIGLGAKYVFVG 29 (100)
Q Consensus 4 iasGGIr~g~Di~KAlALGAd~v~ig 29 (100)
-.+|-| ++..+++|+.-|||.|.+.
T Consensus 35 pC~Grv-~~~~il~Af~~GADGV~V~ 59 (124)
T PF02662_consen 35 PCSGRV-DPEFILRAFEKGADGVLVA 59 (124)
T ss_pred cCCCcc-CHHHHHHHHHcCCCEEEEe
Confidence 334444 7899999999999999985
No 223
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=82.09 E-value=1.7 Score=35.53 Aligned_cols=33 Identities=27% Similarity=0.205 Sum_probs=29.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcc---hHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAK---YVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd---~v~ig~~~L~ 34 (100)
+|+++-||| +..++...+..||+ .|.+++.+..
T Consensus 445 ~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 445 LPVVAIGGI-SASNAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred CCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeHHhc
Confidence 589999999 58999999999999 9999988863
No 224
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=81.29 E-value=4.5 Score=30.30 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=38.0
Q ss_pred EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHH
Q psy7649 4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLV 52 (100)
Q Consensus 4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~ 52 (100)
|....+|+..++..+...|||.+-+.-.++..+.... ..++.++.+.|.
T Consensus 164 ILaAS~r~~~~v~~a~~~G~d~vTvp~~vl~~l~~~p~t~~~~~~F~~dw~ 214 (222)
T PRK12656 164 ILAASFKNVAQVNKAFALGAQAVTAGPDVFEAAFAMPSIQKAVDDFADDWE 214 (222)
T ss_pred EEEEecCCHHHHHHHHHcCCCEEecCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 4456799999999999999999999999998875322 456666665554
No 225
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=81.23 E-value=1.9 Score=32.16 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=32.3
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHK 54 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~e 54 (100)
.|.+||||. ...+-+....|||.+.+|+.+. . ... ....++.+++.
T Consensus 173 ~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF-~--~~d---~~~~~~~lr~~ 218 (223)
T PRK08745 173 RLEIDGGVK-ADNIGAIAAAGADTFVAGSAIF-N--APD---YAQVIAQMRAA 218 (223)
T ss_pred eEEEECCCC-HHHHHHHHHcCCCEEEEChhhh-C--CCC---HHHHHHHHHHH
Confidence 478999997 5567788899999999998743 2 222 45555555544
No 226
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=80.22 E-value=5.3 Score=31.20 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=40.7
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHh--hhHHHHHHHhccC-------HHHHHHHHHHHHHHHhHHHHhcccccHHH
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVF--VGRAALWGLAHSG-------SNGAARVLQSLVHKILPEAVADKVHNAYS 69 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~--ig~~~L~al~~~g-------~~gv~~~i~~l~~el~~~m~l~g~~n~~~ 69 (100)
|+=||-+|+.-|++..+.+|||+|. ++-..+..+...+ ++.+.++.+.+.+.|...|.--|+..+..
T Consensus 198 Ivesge~re~Hh~a~LlGyGA~AV~PYla~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~S 273 (287)
T PF04898_consen 198 IVESGEAREVHHFATLLGYGADAVNPYLAYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQS 273 (287)
T ss_dssp EEEESS--SHHHHHHHHCTT-SEEEEHCCHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHH
T ss_pred EEecCCcccHHHHHHHHcCCHhhhcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhh
Confidence 5568999999999999999999984 2222222222222 45666667777777777777666665543
No 227
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=79.79 E-value=1.1 Score=34.31 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=27.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|+.++||| |...+..-...|+|.+.++.+.-
T Consensus 227 ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 227 VLLEASGGI-TLENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred CcEEEECCC-CHHHHHHHHHcCCCEEEEEeeec
Confidence 589999999 68889899999999999987553
No 228
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=79.66 E-value=0.89 Score=36.40 Aligned_cols=38 Identities=18% Similarity=0.023 Sum_probs=34.5
Q ss_pred cCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHHH
Q psy7649 39 SGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELN 76 (100)
Q Consensus 39 ~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~~ 76 (100)
.+.++|.++++.|++||+..|.+.|+.|+.++...++.
T Consensus 353 ~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~~l~ 390 (392)
T cd02808 353 GKAERVANYLKSLAEELRELAAALGKRSLELLGRSDLL 390 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHHHhh
Confidence 47899999999999999999999999999998877653
No 229
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=79.63 E-value=2.7 Score=31.62 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=33.5
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el 55 (100)
.+.+||||. ..-+-+....|||.+.+|+..++.- ... ..+.++.+++.+
T Consensus 171 ~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~-~~d---~~~~i~~l~~~~ 219 (229)
T PRK09722 171 LIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNL-DED---IDEAWDIMTAQI 219 (229)
T ss_pred EEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCC-CCC---HHHHHHHHHHHH
Confidence 488999998 4467788899999999997655521 112 455555555443
No 230
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=79.41 E-value=6.3 Score=31.23 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=25.4
Q ss_pred HhcccccHHHhhHHHHHHHHHHcCcCCCCC
Q psy7649 60 VADKVHNAYSIFFLELNNLVPTLLLGSIQP 89 (100)
Q Consensus 60 ~l~g~~n~~~l~~~e~~e~~~~lG~~s~~~ 89 (100)
.-.|+.++.+.+..|++.+|..+|.+++.+
T Consensus 311 G~~gv~~~l~~l~~EL~~~m~l~G~~~i~~ 340 (344)
T cd02922 311 GEEGVEKAIQILKDEIETTMRLLGVTSLDQ 340 (344)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 345677788999999999999999998764
No 231
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=79.12 E-value=6.5 Score=30.02 Aligned_cols=49 Identities=27% Similarity=0.205 Sum_probs=32.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH 53 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~ 53 (100)
+||+...||.. .-+=-|++.||..||+|..+-.- +.+......+..+++
T Consensus 187 iPVlcASGlS~-vT~PmAiaaGAsGVGVGSavn~L---n~~~aMva~vr~l~~ 235 (242)
T PF04481_consen 187 IPVLCASGLSA-VTAPMAIAAGASGVGVGSAVNRL---NDEVAMVAAVRSLVE 235 (242)
T ss_pred CceEeccCcch-hhHHHHHHcCCcccchhHHhhhc---ccHHHHHHHHHHHHH
Confidence 58999999854 44557999999999999765432 234444444444433
No 232
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=78.59 E-value=1.2 Score=31.07 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=24.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGR 30 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~ 30 (100)
|+|..||-| ++.=|+||+.-|||.|.+++
T Consensus 33 Irv~CsGrv-n~~fvl~Al~~GaDGV~v~G 61 (132)
T COG1908 33 IRVMCSGRV-NPEFVLKALRKGADGVLVAG 61 (132)
T ss_pred EEeeccCcc-CHHHHHHHHHcCCCeEEEec
Confidence 467778777 67889999999999999875
No 233
>PRK14057 epimerase; Provisional
Probab=78.18 E-value=2.4 Score=32.51 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=32.9
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el 55 (100)
.|.+||||... -+-+..+.|||.+.+|+.+ +. . +...+.++.+++.+
T Consensus 195 ~IeVDGGI~~~-ti~~l~~aGad~~V~GSal-F~--~---~d~~~~i~~l~~~~ 241 (254)
T PRK14057 195 IIVIDGSLTQD-QLPSLIAQGIDRVVSGSAL-FR--D---DRLVENTRSWRAMF 241 (254)
T ss_pred eEEEECCCCHH-HHHHHHHCCCCEEEEChHh-hC--C---CCHHHHHHHHHHHH
Confidence 47899999754 6778899999999999764 32 2 12566666665443
No 234
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=77.07 E-value=2.8 Score=31.59 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=31.9
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHK 54 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~e 54 (100)
.|.+||||. ..-+-+....|||.+.+|+.+ +. .. ...+.++.|+.-
T Consensus 181 ~IeVDGGI~-~~ti~~l~~aGaD~~V~GSal-F~--~~---d~~~~i~~l~~~ 226 (228)
T PRK08091 181 LISIDGSMT-LELASYLKQHQIDWVVSGSAL-FS--QG---ELKTTLKEWKSS 226 (228)
T ss_pred eEEEECCCC-HHHHHHHHHCCCCEEEEChhh-hC--CC---CHHHHHHHHHHh
Confidence 478999997 456778899999999888764 32 21 245556665543
No 235
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.94 E-value=2.1 Score=32.99 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=28.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+++.++||| |..++..-...|+|.+.+|.+..
T Consensus 233 i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 233 IVTEASGGI-TLENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred ceEEEECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 357799999 89999999999999999997654
No 236
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=76.67 E-value=1.7 Score=31.86 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=23.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+.+.+||||+.. .+-+....|||.+.+|+.+.
T Consensus 167 ~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 167 FEIEVDGGINEE-NIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp SEEEEESSESTT-THHHHHHHT--EEEESHHHH
T ss_pred eEEEEECCCCHH-HHHHHHHcCCCEEEECHHHh
Confidence 368999999875 56678889999999997653
No 237
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=76.50 E-value=6.4 Score=29.84 Aligned_cols=48 Identities=13% Similarity=0.022 Sum_probs=36.3
Q ss_pred EcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhc-------cCHHHHHHHHHHHH
Q psy7649 5 LDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAH-------SGSNGAARVLQSLV 52 (100)
Q Consensus 5 asGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~-------~g~~gv~~~i~~l~ 52 (100)
....+|++.++..+...|||.+-+.-.++..+.. .+.+++..+.+.|.
T Consensus 175 LaAS~R~~~~v~~a~~~Gad~vTvp~~v~~~l~~~~~~~~~~t~~av~~F~~Dw~ 229 (236)
T TIGR02134 175 LWASPRELFNIIQADRIGCDIITCAHDILAKLPLLGKDLTQYSLETVQMFAKDAQ 229 (236)
T ss_pred EEEccCCHHHHHHHHHcCCCEEECCHHHHHHHHhcCCCCChhHHHHHHHHHHHHH
Confidence 3456999999999999999999999888888742 22356666655554
No 238
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=75.59 E-value=6.2 Score=29.32 Aligned_cols=33 Identities=30% Similarity=0.184 Sum_probs=29.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++=||| +...+-..+.-||+.|.+-+.++.
T Consensus 159 iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 159 IPVVAIGGI-NLENVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred CCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhc
Confidence 689999999 578888999999999998887775
No 239
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=75.22 E-value=1.6 Score=31.95 Aligned_cols=22 Identities=23% Similarity=0.034 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHHHhCcchHhh
Q psy7649 7 GGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 7 GGIr~g~Di~KAlALGAd~v~i 28 (100)
.||++..|+..+..+|||++|+
T Consensus 6 CGit~~eda~~~~~~GaD~iGf 27 (207)
T PRK13958 6 CGFTTIKDVTAASQLPIDAIGF 27 (207)
T ss_pred cCCCcHHHHHHHHHcCCCEEEE
Confidence 5999999999999999999998
No 240
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.11 E-value=4.6 Score=30.25 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=28.0
Q ss_pred CeEEEcCCCCC-hHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRY-GTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~-g~Di~KAlALGAd~v~ig~~~L 33 (100)
++++.+|||.- ..++..-+..||.+|++|+.+.
T Consensus 159 i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 159 TKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred CeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 47999999974 4778888889999999998775
No 241
>KOG1799|consensus
Probab=74.90 E-value=4.6 Score=33.05 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=46.0
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHh
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSI 70 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l 70 (100)
++.+.|||.++.|.+-=+.+|++.|-+-+.++. .|...| +.+-.||+..|...+..++.+.
T Consensus 358 ~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~----~~~~~V----~~~Ca~LK~~m~~~~~~ti~~~ 418 (471)
T KOG1799|consen 358 SLSGIGGVETGYDAAEFILLGSNTVQVCTGVMM----HGYGHV----KTLCAELKDFMKQHNFSTIEEF 418 (471)
T ss_pred ccccccCcccccchhhHhhcCCcHhhhhhHHHh----cCcchH----HHHHHHHHHHHHHcCchhhhhc
Confidence 577899999999999999999999988776653 233223 4555677777888877777653
No 242
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.49 E-value=2.5 Score=32.69 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=27.9
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
.+.+|||| |...+.+-...|+|.+.+|.+..
T Consensus 233 ~leaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 233 KIEVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred EEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 58899999 99999999999999999998664
No 243
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=74.46 E-value=5.3 Score=29.55 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=28.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
++++.+|||.- .++-.-++.||.+|++|+.+..
T Consensus 149 i~~~ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 149 VRFCPTGGINL-ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred CcEEecCCCCH-HHHHHHHhCCCEEEEEChhhcC
Confidence 57899999965 7888999999999999988764
No 244
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=74.06 E-value=5.1 Score=33.08 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=30.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+|+++=||| +..++...+..||+.|.+-+.+..
T Consensus 365 iPVVAIGGI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 365 FPTVAIGGI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCEEEECCc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 589999999 899999999999999999888873
No 245
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=73.64 E-value=1.6 Score=31.47 Aligned_cols=33 Identities=27% Similarity=0.210 Sum_probs=28.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+||+.-|+|++..++-.+...|||.|.++.+.+
T Consensus 73 iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 73 LPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred CCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 588999999999999999999999998876543
No 246
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=72.83 E-value=2.1 Score=31.46 Aligned_cols=23 Identities=30% Similarity=0.170 Sum_probs=21.5
Q ss_pred cCCCCChHHHHHHHHhCcchHhh
Q psy7649 6 DGGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 6 sGGIr~g~Di~KAlALGAd~v~i 28 (100)
=.||++..|+..+..+|||++|+
T Consensus 7 ICGi~~~eda~~~~~~Gad~iGf 29 (210)
T PRK01222 7 ICGITTPEDAEAAAELGADAIGF 29 (210)
T ss_pred ECCCCcHHHHHHHHHcCCCEEEE
Confidence 36999999999999999999998
No 247
>PLN02363 phosphoribosylanthranilate isomerase
Probab=72.31 E-value=2.1 Score=32.62 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHhCcchHhh
Q psy7649 7 GGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 7 GGIr~g~Di~KAlALGAd~v~i 28 (100)
.||++..|+..|..+|||++|+
T Consensus 52 CGit~~eda~~a~~~GaD~iGf 73 (256)
T PLN02363 52 CGITSARDAAMAVEAGADFIGM 73 (256)
T ss_pred CCCCcHHHHHHHHHcCCCEEEE
Confidence 6999999999999999999998
No 248
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=72.17 E-value=15 Score=29.24 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=40.8
Q ss_pred EEEcCCCCChHHHHH----HHHhCc--chHhhhHHHHHH-Hhc---cCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649 3 VYLDGGIRYGTDVFK----AIGLGA--KYVFVGRAALWG-LAH---SGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF 72 (100)
Q Consensus 3 liasGGIr~g~Di~K----AlALGA--d~v~ig~~~L~a-l~~---~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~ 72 (100)
|++|||. +..++.+ |+.-|| .-|.+||..-.. +.. .|.+...++++. -...++.++.++..
T Consensus 245 vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~--------~g~~~~~~l~~v~~ 315 (340)
T PRK12858 245 IFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDGIEPYAAEGEEARRAWLNT--------EGVANITRLNEVLE 315 (340)
T ss_pred EEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhhccccCCCHHHHHHHHHH--------HhHHHHHHHHHHHH
Confidence 5669998 5555544 677899 899999976543 333 356656655533 12222333344444
Q ss_pred HHHHHHHHHc
Q psy7649 73 LELNNLVPTL 82 (100)
Q Consensus 73 ~e~~e~~~~l 82 (100)
.-...|....
T Consensus 316 ~~~~~w~~~~ 325 (340)
T PRK12858 316 RTATPWKDKY 325 (340)
T ss_pred HhCCccHhhc
Confidence 5555555444
No 249
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=72.10 E-value=3 Score=31.52 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=29.4
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
|++..|||+-..|.--+.-+|.+.|.+|+++-
T Consensus 183 pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh 214 (229)
T COG1411 183 PVLLGGGVGGMEDLELLLGMGVSGVLVATALH 214 (229)
T ss_pred ceeecCCcCcHHHHHHHhcCCCceeeehhhhh
Confidence 68999999999999999999999999998764
No 250
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=71.72 E-value=12 Score=28.79 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=45.8
Q ss_pred CeEEEcC--CCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHHHHH
Q psy7649 1 MEVYLDG--GIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNL 78 (100)
Q Consensus 1 i~liasG--GIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~~e~ 78 (100)
+|+++-| ||. ..++-+++..|++-|.+++.+..+... .+.++++.-.++.+..-. .....+...+.++++
T Consensus 201 iPlv~hGgSGi~-~e~i~~~i~~Gi~kiNv~T~l~~a~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~ 272 (282)
T TIGR01859 201 IPLVLHGASGIP-EEQIKKAIKLGIAKINIDTDCRIAFTA----AIRKVLTEKKDEYDPRKI---LGPAREAIKETVKEK 272 (282)
T ss_pred CCEEEECCCCCC-HHHHHHHHHcCCCEEEECcHHHHHHHH----HHHHHHHhCCCcCCHHHH---HHHHHHHHHHHHHHH
Confidence 6899999 774 467889999999999999999877442 344444211111111111 112234455666666
Q ss_pred HHHcCc
Q psy7649 79 VPTLLL 84 (100)
Q Consensus 79 ~~~lG~ 84 (100)
++.+|.
T Consensus 273 ~~~~gs 278 (282)
T TIGR01859 273 MRLFGS 278 (282)
T ss_pred HHHhCC
Confidence 666653
No 251
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=71.26 E-value=2.4 Score=30.41 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=20.8
Q ss_pred CCCCChHHHHHHHHhCcchHhh
Q psy7649 7 GGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 7 GGIr~g~Di~KAlALGAd~v~i 28 (100)
.||++..|+-+|..+|||++++
T Consensus 4 CGi~~~ed~~~a~~~Gvd~ig~ 25 (203)
T cd00405 4 CGITTLEDALAAAEAGADAIGF 25 (203)
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 5999999999999999999987
No 252
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=71.12 E-value=3 Score=32.01 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.2
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHh
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVF 27 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~ 27 (100)
|=+||||||..|+...+.+|.+..+
T Consensus 198 IKAsGGIrt~~~A~~~i~ag~~~lg 222 (257)
T PRK05283 198 FKPAGGVRTAEDAAQYLALADEILG 222 (257)
T ss_pred EEccCCCCCHHHHHHHHHHHHHHhC
Confidence 5689999999999999999988764
No 253
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=70.72 E-value=3.3 Score=31.56 Aligned_cols=28 Identities=18% Similarity=0.174 Sum_probs=26.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~i 28 (100)
+||+....|-++.+|..|.++|||+|.+
T Consensus 103 ~PvL~KDFIid~~QI~ea~~~GADavLL 130 (247)
T PRK13957 103 IPVLRKDFILDEIQIREARAFGASAILL 130 (247)
T ss_pred CCEEeccccCCHHHHHHHHHcCCCEEEe
Confidence 5899999999999999999999999954
No 254
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=70.36 E-value=2.8 Score=30.87 Aligned_cols=29 Identities=31% Similarity=0.271 Sum_probs=21.4
Q ss_pred EEEcCCCCC--hHHHHHHHHhCcchHhhhHHHHH
Q psy7649 3 VYLDGGIRY--GTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 3 liasGGIr~--g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
+.++||||- .... |.. |||.+.+|||+..
T Consensus 166 i~V~gGI~~~~~~~~-~~~--~ad~~VvGr~I~~ 196 (216)
T PRK13306 166 VSVTGGLVVEDLKLF-KGI--PVKTFIAGRAIRG 196 (216)
T ss_pred EEEcCCCCHhhHHHH-hcC--CCCEEEECCcccC
Confidence 789999994 3333 333 9999999999653
No 255
>PRK08005 epimerase; Validated
Probab=69.76 E-value=4.1 Score=30.25 Aligned_cols=31 Identities=32% Similarity=0.465 Sum_probs=25.2
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
.+.+||||. ..-+-+....|||.+.+|+.+.
T Consensus 165 ~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 165 ECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred CEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 478999997 5566688999999999997643
No 256
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=69.20 E-value=7.3 Score=28.56 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=28.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|+++=|||. ..++...++.||+.|.+-+.+.
T Consensus 159 ~PV~AiGGI~-~~ni~~l~~~Ga~GiAvisai~ 190 (211)
T PRK03512 159 YPTVAIGGIS-LERAPAVLATGVGSIAVVSAIT 190 (211)
T ss_pred CCEEEECCCC-HHHHHHHHHcCCCEEEEhhHhh
Confidence 5899999995 8999999999999999888776
No 257
>PRK06801 hypothetical protein; Provisional
Probab=68.05 E-value=20 Score=27.80 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=30.3
Q ss_pred CeEEEcCC--CCChHHHHHHHHhCcchHhhhHHHHHHHh
Q psy7649 1 MEVYLDGG--IRYGTDVFKAIGLGAKYVFVGRAALWGLA 37 (100)
Q Consensus 1 i~liasGG--Ir~g~Di~KAlALGAd~v~ig~~~L~al~ 37 (100)
+|+++-|| |- ..++.|++.+|++-|.+++.+..+..
T Consensus 204 ~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~~a~~ 241 (286)
T PRK06801 204 LPLVLHGGSGIS-DADFRRAIELGIHKINFYTGMSQAAL 241 (286)
T ss_pred CCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHHHHHHH
Confidence 58899999 54 46788999999999999999887744
No 258
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=67.00 E-value=2.8 Score=31.02 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=24.5
Q ss_pred EEEcCCCCChH-----------HHHHHHHhCcchHhhhHHHHHH
Q psy7649 3 VYLDGGIRYGT-----------DVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 3 liasGGIr~g~-----------Di~KAlALGAd~v~ig~~~L~a 35 (100)
+.+.+||+ +. ..-.|+..|||.+.+||++..+
T Consensus 171 ~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a 213 (230)
T PRK00230 171 LLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQA 213 (230)
T ss_pred EEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCC
Confidence 46789997 22 3556778999999999998754
No 259
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=66.68 E-value=12 Score=32.43 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=29.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+|+++=||| +..++-.+++.||+.|.+-+.+.
T Consensus 167 iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~ 198 (755)
T PRK09517 167 IASVAIGGV-GLRNAAELAATGIDGLCVVSAIM 198 (755)
T ss_pred CCEEEECCC-CHHHHHHHHHcCCCEEEEehHhh
Confidence 589999999 89999999999999999988876
No 260
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=66.62 E-value=3.8 Score=30.28 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=23.9
Q ss_pred CCCChHHHHHHHHhCcchH------hhh-HHHHHHHh
Q psy7649 8 GIRYGTDVFKAIGLGAKYV------FVG-RAALWGLA 37 (100)
Q Consensus 8 GIr~g~Di~KAlALGAd~v------~ig-~~~L~al~ 37 (100)
|+.|+.|+.+|+.+|||.| .+| -.+++++.
T Consensus 107 G~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal~ 143 (204)
T TIGR01182 107 GVATPSEIMLALELGITALKLFPAEVSGGVKMLKALA 143 (204)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHHh
Confidence 8999999999999999986 233 46666654
No 261
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=65.61 E-value=22 Score=27.36 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=29.9
Q ss_pred CeEEEcC--CCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 1 MEVYLDG--GIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 1 i~liasG--GIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
+|+++-| || +..++-+++..|++-+.+.+.+..+
T Consensus 201 iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i~~a 236 (281)
T PRK06806 201 IPLVLHGGSGI-SPEDFKKCIQHGIRKINVATATFNS 236 (281)
T ss_pred CCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHHHHH
Confidence 5899999 77 5688999999999999999998864
No 262
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=64.36 E-value=4.1 Score=30.33 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.7
Q ss_pred CCCCChHHHHHHHHhCcchHhh
Q psy7649 7 GGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 7 GGIr~g~Di~KAlALGAd~v~i 28 (100)
.||+++.|+.-|..+|||.+|+
T Consensus 7 CGlt~~eda~~a~~~gad~iG~ 28 (208)
T COG0135 7 CGLTRLEDAKAAAKAGADYIGF 28 (208)
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 6999999999999999999986
No 263
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=62.41 E-value=28 Score=27.01 Aligned_cols=77 Identities=6% Similarity=-0.023 Sum_probs=48.2
Q ss_pred CeEEEcCCCCCh-HHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHHHHHH
Q psy7649 1 MEVYLDGGIRYG-TDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNLV 79 (100)
Q Consensus 1 i~liasGGIr~g-~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~~e~~ 79 (100)
+|+...||=.++ .|+-||+.+|..=+.+++-+..+.. +++.+.+..-.++++....+ ....+...+.+++++
T Consensus 200 vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a~~----~~~~~~l~~~~~~~d~~~~~---~~~~~~~~~~v~~~i 272 (283)
T PRK07998 200 VPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKAFI----TTVGKAYVNNHNEANLARVM---AKAKQAVEEDVYSKI 272 (283)
T ss_pred CCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHHHH----HHHHHHHHhCcCcCCHHHHH---HHHHHHHHHHHHHHH
Confidence 588999999888 5566899999999999999887754 33444442211112111111 122345556777777
Q ss_pred HHcCc
Q psy7649 80 PTLLL 84 (100)
Q Consensus 80 ~~lG~ 84 (100)
+.+|.
T Consensus 273 ~~~gs 277 (283)
T PRK07998 273 KMMNS 277 (283)
T ss_pred HHhCC
Confidence 77664
No 264
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=62.29 E-value=4.1 Score=29.35 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=18.5
Q ss_pred CCCCChHHHHHHHHhCcchHhhh
Q psy7649 7 GGIRYGTDVFKAIGLGAKYVFVG 29 (100)
Q Consensus 7 GGIr~g~Di~KAlALGAd~v~ig 29 (100)
.||++..|+..+..+|+|++|+=
T Consensus 4 CGi~~~~da~~~~~~g~d~~Gfi 26 (197)
T PF00697_consen 4 CGITRPEDARLAAELGADYLGFI 26 (197)
T ss_dssp E---SHHHHHHHHHHTSSEEEEE
T ss_pred CCCCcHHHHHHHHHcCCCEEeee
Confidence 48999999999999999999983
No 265
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=61.89 E-value=5.2 Score=31.02 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=27.7
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
.+.+|||| |...+.+-...|.|.+++|+.+.
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~ 277 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAIS 277 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccC
Confidence 58999999 89999999999999999998664
No 266
>PRK08185 hypothetical protein; Provisional
Probab=61.88 E-value=27 Score=27.03 Aligned_cols=77 Identities=10% Similarity=0.108 Sum_probs=47.3
Q ss_pred CeEEEcCCCCChHHHH-HHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVF-KAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNLV 79 (100)
Q Consensus 1 i~liasGGIr~g~Di~-KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~~e~~ 79 (100)
+|+++-||+-.|.|-+ ||+.+|..=|.+++-+..+.. +++.+++..-.++++..-.+ ....+...+..++++
T Consensus 199 iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a~~----~~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~i 271 (283)
T PRK08185 199 IPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYAFF----KKVREILSDNPSLYEPNQIY---PSAIEAAKEVVRHKM 271 (283)
T ss_pred CCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHHHH----HHHHHHHHhCcCcCCHHHHH---HHHHHHHHHHHHHHH
Confidence 5899999998887655 799999999999999887754 33444442211111111111 112244456666666
Q ss_pred HHcCc
Q psy7649 80 PTLLL 84 (100)
Q Consensus 80 ~~lG~ 84 (100)
+.+|.
T Consensus 272 ~~~gs 276 (283)
T PRK08185 272 DLFNS 276 (283)
T ss_pred HHhCC
Confidence 66663
No 267
>PLN02535 glycolate oxidase
Probab=61.09 E-value=25 Score=28.21 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=28.1
Q ss_pred hcccccHHHhhHHHHHHHHHHcCcCCCCC---CCccCCCCCC
Q psy7649 61 ADKVHNAYSIFFLELNNLVPTLLLGSIQP---PSKRLAPNRL 99 (100)
Q Consensus 61 l~g~~n~~~l~~~e~~e~~~~lG~~s~~~---~~~~~~~~~~ 99 (100)
-.|+.+..+.+..|++..|..+|..++.+ .-.+|.-|||
T Consensus 319 ~~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~~ 360 (364)
T PLN02535 319 EDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERERL 360 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhhh
Confidence 34566677778899999999999997763 3345555554
No 268
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=60.84 E-value=6.8 Score=29.55 Aligned_cols=47 Identities=23% Similarity=0.433 Sum_probs=30.8
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el 55 (100)
.+-+||||.. .-+-++.+.|||.+.+|+. ++. +.+ ..+.++.++.++
T Consensus 171 ~IeVDGGI~~-~t~~~~~~AGad~~VaGSa-lF~----~~d-~~~~i~~~~~~~ 217 (220)
T COG0036 171 LIEVDGGINL-ETIKQLAAAGADVFVAGSA-LFG----ADD-YKATIRELRGEL 217 (220)
T ss_pred EEEEeCCcCH-HHHHHHHHcCCCEEEEEEE-EeC----Ccc-HHHHHHHHHHHh
Confidence 4789999964 3444556699999999983 321 222 666666666554
No 269
>KOG4201|consensus
Probab=59.89 E-value=8.2 Score=29.73 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=30.6
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
-+++-.||-|+.|+++--.-|.++|.+|-.++.+
T Consensus 239 ilva~SGi~tpdDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 239 ILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred EEEeccCCCCHHHHHHHHHcCceEEEecHHHHhc
Confidence 3678899999999999999999999999888764
No 270
>KOG0134|consensus
Probab=59.86 E-value=6.4 Score=32.19 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=28.9
Q ss_pred EEEcCCCCChHHHHHHHHhCcc-hHhhhHHHHH
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAK-YVFVGRAALW 34 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd-~v~ig~~~L~ 34 (100)
|-+.||.+++.++..|+..|.. .|+.||+|+.
T Consensus 321 v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~a 353 (400)
T KOG0134|consen 321 VYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLA 353 (400)
T ss_pred EEecCCccCHHHHHHHHhcCCceeEEecchhcc
Confidence 4567899999999999999998 9999999983
No 271
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=57.70 E-value=7.9 Score=28.43 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=26.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGR 30 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~ 30 (100)
+|+|+.|=|++-.|+--||.-||-+|.-..
T Consensus 145 ~piIAGGLi~t~Eev~~Al~aGA~avSTs~ 174 (181)
T COG1954 145 IPIIAGGLIETEEEVREALKAGAVAVSTSN 174 (181)
T ss_pred CCEEeccccccHHHHHHHHHhCcEEEeecc
Confidence 589999999999999999999999887543
No 272
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=57.29 E-value=30 Score=26.82 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=28.7
Q ss_pred CeEEEcCC--CCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 1 MEVYLDGG--IRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 1 i~liasGG--Ir~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
+|+++-|| | +..++-|++..|++-|.+.+.+..+
T Consensus 203 iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~~~ 238 (293)
T PRK07315 203 FPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQIA 238 (293)
T ss_pred CCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHHHH
Confidence 58899999 6 3467889999999999999988863
No 273
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.88 E-value=7.4 Score=28.74 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=24.8
Q ss_pred EcCCCCChHHHHHHHHhCcchH------hh-hHHHHHHHh
Q psy7649 5 LDGGIRYGTDVFKAIGLGAKYV------FV-GRAALWGLA 37 (100)
Q Consensus 5 asGGIr~g~Di~KAlALGAd~v------~i-g~~~L~al~ 37 (100)
.-=|+-|+.|+..|+.+||+.| .+ |-.+++++.
T Consensus 100 ~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~ 139 (201)
T PRK06015 100 LLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALS 139 (201)
T ss_pred EeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHH
Confidence 3348899999999999999986 23 356666654
No 274
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=55.82 E-value=7.9 Score=27.67 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=25.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
+.+.+|||| |...+..-...|+|.+++|....
T Consensus 128 v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~ 159 (169)
T PF01729_consen 128 VKIEASGGI-TLENIAEYAKTGVDVISVGSLTH 159 (169)
T ss_dssp SEEEEESSS-STTTHHHHHHTT-SEEEECHHHH
T ss_pred EEEEEECCC-CHHHHHHHHhcCCCEEEcChhhc
Confidence 458899999 56778888899999999997654
No 275
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=54.67 E-value=40 Score=25.75 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=37.6
Q ss_pred CCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--------HHHHHHHHHHHHH
Q psy7649 7 GGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--------SNGAARVLQSLVH 53 (100)
Q Consensus 7 GGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--------~~gv~~~i~~l~~ 53 (100)
-++|++.++..+...|||.+-+.-..+.++...+ .+|+.++.+.|.+
T Consensus 178 as~~~~~~~~~~~l~G~d~~Tip~~~l~~l~~~~~~~~~~l~~eGI~~F~~D~~~ 232 (239)
T COG0176 178 ASARFPNHVYIAALAGADVLTIPPDLLKQLLKHGGAMAVPLLDEGIRKFAKDWEK 232 (239)
T ss_pred ecCccHHHHHHHHHhCCCcccCCHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999998887653 4666666665544
No 276
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=54.55 E-value=13 Score=28.07 Aligned_cols=32 Identities=41% Similarity=0.507 Sum_probs=27.6
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
.+-+.||| ++.|+-.....|++.|.+||.+-.
T Consensus 166 ~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt~ 197 (217)
T COG0269 166 KVAVAGGI-TPEDIPLFKGIGADIVIVGRAITG 197 (217)
T ss_pred eEEEecCC-CHHHHHHHhcCCCCEEEECchhcC
Confidence 46678998 689999999999999999998764
No 277
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=53.34 E-value=8.7 Score=28.79 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=27.3
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
.+++||||- ...+-.-...|.|.+++|+++..
T Consensus 241 ~i~~Sggi~-~~~i~~~~~~gvd~~gvG~~~~~ 272 (281)
T cd00516 241 KIEASGGLD-EENIRAYAETGVDVFGVGTLLHS 272 (281)
T ss_pred EEEEeCCCC-HHHHHHHHHcCCCEEEeCccccc
Confidence 589999996 88888888899999999987653
No 278
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=52.67 E-value=8.4 Score=31.77 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHhCcchHhh
Q psy7649 7 GGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 7 GGIr~g~Di~KAlALGAd~v~i 28 (100)
.|+++..|+..|..+|||++|+
T Consensus 262 CGit~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 262 CGLTRPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred CCCCCHHHHHHHHhCCCCEEee
Confidence 6999999999999999999998
No 279
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.62 E-value=9.4 Score=28.56 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=25.6
Q ss_pred EcCCCCChHHHHHHHHhCcchH------hhhHHHHHHHh
Q psy7649 5 LDGGIRYGTDVFKAIGLGAKYV------FVGRAALWGLA 37 (100)
Q Consensus 5 asGGIr~g~Di~KAlALGAd~v------~ig~~~L~al~ 37 (100)
.-=|+-|+.|+..|+.+||+.| .+|-.+++++.
T Consensus 115 ~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~ 153 (222)
T PRK07114 115 YSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIK 153 (222)
T ss_pred EeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHh
Confidence 3358899999999999999875 34566676665
No 280
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=52.00 E-value=25 Score=26.36 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=34.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH-H-HhccCHHHHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW-G-LAHSGSNGAARVLQSLVH 53 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~-a-l~~~g~~gv~~~i~~l~~ 53 (100)
++++..|||. ...+..-+++|+.+|++|+-+.. . ...+.-+.+.+..+.+.+
T Consensus 154 v~~~pTGGVs-~~N~~~yla~gv~avG~Gs~l~~~~~~~~~~~~~i~~~a~~~~~ 207 (211)
T COG0800 154 VRFCPTGGVS-LDNAADYLAAGVVAVGLGSWLVPKDLIAAGDWDRITELAREAVA 207 (211)
T ss_pred CeEeecCCCC-HHHHHHHHhCCceEEecCccccChhhhhcccHHHHHHHHHHHHH
Confidence 4678899995 45899999999999999987763 2 233333444444444433
No 281
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=51.49 E-value=16 Score=28.99 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=51.4
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhh----------HHHHHHHhc-----c-------------CHHHHHHHH-----
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVG----------RAALWGLAH-----S-------------GSNGAARVL----- 48 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig----------~~~L~al~~-----~-------------g~~gv~~~i----- 48 (100)
|||+= ||-++.|+.++...|+|.+.++ -+.+.+|.. . |.| +.+.+
T Consensus 227 pvivK-gv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~D-v~kalaLGA~ 304 (356)
T PF01070_consen 227 PVIVK-GVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLD-VAKALALGAD 304 (356)
T ss_dssp EEEEE-EE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHH-HHHHHHTT-S
T ss_pred ceEEE-ecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHH-HHHHHHcCCC
Confidence 45554 4589999999999999999887 223332211 0 011 11111
Q ss_pred -----HHHHHHHhHHHHhcccccHHHhhHHHHHHHHHHcCcCCCCC
Q psy7649 49 -----QSLVHKILPEAVADKVHNAYSIFFLELNNLVPTLLLGSIQP 89 (100)
Q Consensus 49 -----~~l~~el~~~m~l~g~~n~~~l~~~e~~e~~~~lG~~s~~~ 89 (100)
.-+..-+ ....-.|+.+..+.+..|++..|..+|..++.+
T Consensus 305 ~v~igr~~l~~l-~~~g~~gv~~~~~~l~~el~~~m~l~G~~~~~~ 349 (356)
T PF01070_consen 305 AVGIGRPFLYAL-AAGGEEGVERVLEILKEELKRAMFLLGARSIAE 349 (356)
T ss_dssp EEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHT-SBGGG
T ss_pred eEEEccHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 0111111 134567888889999999999999999998874
No 282
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=51.48 E-value=7.9 Score=28.45 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=22.6
Q ss_pred CCCCChHHHHHHHHhCcchH------hhh-HHHHHHHh
Q psy7649 7 GGIRYGTDVFKAIGLGAKYV------FVG-RAALWGLA 37 (100)
Q Consensus 7 GGIr~g~Di~KAlALGAd~v------~ig-~~~L~al~ 37 (100)
=|+-|+.|+.+|+.+||+.| .+| -.+++++.
T Consensus 106 PG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~ 143 (196)
T PF01081_consen 106 PGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALR 143 (196)
T ss_dssp EEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHh
Confidence 37889999999999999976 234 45666654
No 283
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=50.78 E-value=9.3 Score=27.16 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.9
Q ss_pred CCCChHHHHHHHHhCcchHhh
Q psy7649 8 GIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 8 GIr~g~Di~KAlALGAd~v~i 28 (100)
|+.|..|+.+|+..|||.+.+
T Consensus 103 gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 103 GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred CcCCHHHHHHHHHCCCCEEEE
Confidence 788999999999999999997
No 284
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.98 E-value=15 Score=28.64 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=26.2
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
.+.+|||| |...+..--..|+|.+.+|.+..
T Consensus 248 ~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 248 LLESSGGL-TLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEeChhhc
Confidence 58899999 67778888889999999998664
No 285
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=48.26 E-value=58 Score=25.63 Aligned_cols=77 Identities=9% Similarity=-0.057 Sum_probs=48.2
Q ss_pred CeEEEcCCCCChH----------------------HHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHH
Q psy7649 1 MEVYLDGGIRYGT----------------------DVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPE 58 (100)
Q Consensus 1 i~liasGGIr~g~----------------------Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~ 58 (100)
+|++.-||=..|. |+.||+.+|..=|.+++-+..+.. +++.+.++...++++..
T Consensus 205 iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~----~~~~~~~~~~~~~~d~~ 280 (307)
T PRK05835 205 IPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFI----AEVRKVANEDKSQFDLR 280 (307)
T ss_pred CCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHHHHH----HHHHHHHHhCCccCCHH
Confidence 5888899988777 799999999999999999887754 33455443222222211
Q ss_pred HHhcccccHHHhhHHHHHHHHHHcCc
Q psy7649 59 AVADKVHNAYSIFFLELNNLVPTLLL 84 (100)
Q Consensus 59 m~l~g~~n~~~l~~~e~~e~~~~lG~ 84 (100)
-.+ ....+...+..+++++.+|.
T Consensus 281 ~~~---~~~~~~~~~~v~~~i~~~gs 303 (307)
T PRK05835 281 KFF---SPAQLALKNVVKERMKLLGS 303 (307)
T ss_pred HHH---HHHHHHHHHHHHHHHHHhCC
Confidence 111 12234444666666666653
No 286
>PRK14567 triosephosphate isomerase; Provisional
Probab=47.54 E-value=17 Score=27.78 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=29.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALWG 35 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~a 35 (100)
++|+..|+| ++.++...++++ .|.+.+|+.-|.+
T Consensus 203 v~IlYGGSV-~~~N~~~l~~~~diDG~LVGgasL~~ 237 (253)
T PRK14567 203 IKIVYGGSL-KAENAKDILSLPDVDGGLIGGASLKA 237 (253)
T ss_pred ceEEEcCcC-CHHHHHHHHcCCCCCEEEeehhhhcH
Confidence 468888888 999999999999 9999999988743
No 287
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=47.37 E-value=13 Score=30.45 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.4
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVG 29 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig 29 (100)
||++ |++-|..++..+...|||+|.+|
T Consensus 271 ~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 271 QIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred CEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 5566 99999999999999999999653
No 288
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=47.13 E-value=15 Score=30.40 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.9
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHh
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVF 27 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ 27 (100)
+|++ |.+-|..|+.+++..|||++-
T Consensus 284 ~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 284 DIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred eEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 4455 899999999999999999984
No 289
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=46.61 E-value=68 Score=21.33 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=28.9
Q ss_pred hHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649 12 GTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL 48 (100)
Q Consensus 12 g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i 48 (100)
-.|.+|-..-|...-+.-+.+|......|++|+..++
T Consensus 29 ll~Lak~v~~GE~~~~~~re~l~qaLT~G~egav~f~ 65 (98)
T PF11247_consen 29 LLELAKKVGAGEKVSGFQREMLVQALTHGPEGAVAFV 65 (98)
T ss_pred HHHHHhhcCCccccCHHHHHHHHHHHhcChHHHHHHH
Confidence 3566777777888888888888876777999988775
No 290
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=46.21 E-value=17 Score=28.37 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.8
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhh
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~i 28 (100)
+|++ |.+-|..++.+++..|||++.+
T Consensus 137 ~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 137 DVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred eEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 4555 8999999999999999999875
No 291
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=45.94 E-value=14 Score=30.07 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.2
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVG 29 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig 29 (100)
+|++ |.+-|..++..++..|||++.+|
T Consensus 267 ~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 267 DIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred CEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 5566 99999999999999999998543
No 292
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=44.48 E-value=80 Score=24.48 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=47.3
Q ss_pred CeEEEcCCCCCh-HHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHHHHHH
Q psy7649 1 MEVYLDGGIRYG-TDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNLV 79 (100)
Q Consensus 1 i~liasGGIr~g-~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~~e~~ 79 (100)
+|++.-||-..+ .|+-||+.+|..=+.+++-+..+... ++.+.++.-..+++....+ ....+.....+++++
T Consensus 204 iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~----~~~~~~~~~~~~~d~~~~~---~~~~~a~~~~v~~~i 276 (285)
T PRK07709 204 VPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTK----AVREVLNKDQEVYDPRKFI---GPGRDAIKATVIGKI 276 (285)
T ss_pred CCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHH----HHHHHHHhCCCcCCHHHHH---HHHHHHHHHHHHHHH
Confidence 589999998888 56668999999999999988877543 2444432211112111111 122344556666666
Q ss_pred HHcCc
Q psy7649 80 PTLLL 84 (100)
Q Consensus 80 ~~lG~ 84 (100)
+.+|.
T Consensus 277 ~~~gs 281 (285)
T PRK07709 277 REFGS 281 (285)
T ss_pred HHhCC
Confidence 66663
No 293
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=44.01 E-value=15 Score=27.71 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=28.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~ 34 (100)
++|+..|+|.. .++...+.++ .|.+.+|+..|.
T Consensus 200 ~~IlYGGSV~~-~N~~~l~~~~~vDG~LVG~Asl~ 233 (242)
T cd00311 200 VRILYGGSVNP-ENAAELLAQPDIDGVLVGGASLK 233 (242)
T ss_pred eeEEECCCCCH-HHHHHHhcCCCCCEEEeehHhhC
Confidence 46888888877 9999999999 999999998874
No 294
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.53 E-value=16 Score=27.03 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=19.4
Q ss_pred CCCCChHHHHHHHHhCcchHhh
Q psy7649 7 GGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 7 GGIr~g~Di~KAlALGAd~v~i 28 (100)
=|+.|+.++..|+.+||+.|-+
T Consensus 113 PG~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 113 PGVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred CCCCCHHHHHHHHHCCCCEEEE
Confidence 3889999999999999998755
No 295
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=42.01 E-value=27 Score=26.80 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=33.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHh----ccCHHHHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLA----HSGSNGAARVLQSLVH 53 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~----~~g~~gv~~~i~~l~~ 53 (100)
.|+++.||+ |+..+.+++.. ||.+-+|+.|=.. + ...++-|.++++..++
T Consensus 201 ~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~~-G~~~n~~D~~rV~~Fm~~v~~ 254 (257)
T TIGR00259 201 TPVLAGSGV-NLENVEELLSI-ADGVIVATTIKKD-GVFNNFVDQARVSQFVEKVAH 254 (257)
T ss_pred CeEEEECCC-CHHHHHHHHhh-CCEEEECCCcccC-CccCCCcCHHHHHHHHHHHHH
Confidence 488999998 67778888876 8888888876411 1 1234556666655443
No 296
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=40.78 E-value=89 Score=25.09 Aligned_cols=78 Identities=8% Similarity=0.010 Sum_probs=48.0
Q ss_pred CeEEEcCCCCCh----------------------HHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHH
Q psy7649 1 MEVYLDGGIRYG----------------------TDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPE 58 (100)
Q Consensus 1 i~liasGGIr~g----------------------~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~ 58 (100)
+|++.-||=-.+ .|+.||+.+|..=|.+++-+.++... ++.++++.-..+++..
T Consensus 225 vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~----~~~~~~~~~~~~~d~~ 300 (347)
T TIGR01521 225 THLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTA----AFRRFAAQNPSEFDPR 300 (347)
T ss_pred CCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHH----HHHHHHHhCCCcCCHH
Confidence 578888887666 78999999999999999998877542 3444443211112211
Q ss_pred HHhcccccHHHhhHHHHHHHHHHcCcC
Q psy7649 59 AVADKVHNAYSIFFLELNNLVPTLLLG 85 (100)
Q Consensus 59 m~l~g~~n~~~l~~~e~~e~~~~lG~~ 85 (100)
-.+. ...+....-+.++++.+|..
T Consensus 301 ~~~~---~~~~a~~~~v~~~i~~~gs~ 324 (347)
T TIGR01521 301 KFLK---PTVEAMRDVCIARYEAFGTA 324 (347)
T ss_pred HHHH---HHHHHHHHHHHHHHHHhCCC
Confidence 1111 22344556666666666643
No 297
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=40.39 E-value=18 Score=28.86 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=21.5
Q ss_pred CCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 8 GIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 8 GIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
|+-+|.|++.++++|+|.+=..-|...
T Consensus 247 Gvg~P~~i~~~v~~GvD~FD~~~p~r~ 273 (366)
T PRK00112 247 GVGTPEDLVEGVARGVDMFDCVMPTRN 273 (366)
T ss_pred CCCCHHHHHHHHHcCCCEEeeCCcccc
Confidence 488999999999999998655444443
No 298
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.15 E-value=17 Score=26.11 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=19.2
Q ss_pred CCChHHHHHHHHhCcchHhh
Q psy7649 9 IRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 9 Ir~g~Di~KAlALGAd~v~i 28 (100)
..|+.++.+|..+|||.+.+
T Consensus 112 ~~t~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 112 ALTPTEIVTAWQAGASCVKV 131 (187)
T ss_pred cCCHHHHHHHHHCCCCEEEE
Confidence 89999999999999999987
No 299
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=40.06 E-value=21 Score=28.65 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=26.1
Q ss_pred HhcccccHHHhhHHHHHHHHHHcCcCCCCCC
Q psy7649 60 VADKVHNAYSIFFLELNNLVPTLLLGSIQPP 90 (100)
Q Consensus 60 ~l~g~~n~~~l~~~e~~e~~~~lG~~s~~~~ 90 (100)
...|+....+++..|++..|..+|.+++++.
T Consensus 329 G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l 359 (361)
T cd04736 329 GEAGVSEVLRLLKEEIDRTLALIGCPDIASL 359 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHc
Confidence 4457888888999999999999999988753
No 300
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=38.24 E-value=8.5 Score=28.43 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=29.8
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
++|+..|+|..+.+.-.+...+.|.+.+|+..|.
T Consensus 170 ~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~ 203 (205)
T TIGR00419 170 VRVLCGAGISTGEDAELAAQLGAEGVLLASGSLK 203 (205)
T ss_pred ceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence 4789999999999999999999999999987653
No 301
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=38.15 E-value=10 Score=29.14 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=32.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
++|+..|+|..+.+.-.+..+++|-+.+|+..|.+
T Consensus 203 v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka 237 (251)
T COG0149 203 VRILYGGSVKPGNAAELAAQPDIDGALVGGASLKA 237 (251)
T ss_pred eEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecc
Confidence 57999999999999999999999999999988764
No 302
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=37.31 E-value=24 Score=26.47 Aligned_cols=31 Identities=39% Similarity=0.527 Sum_probs=24.0
Q ss_pred CCCCChHHHHHHHHhCcchH------hh-hHHHHHHHh
Q psy7649 7 GGIRYGTDVFKAIGLGAKYV------FV-GRAALWGLA 37 (100)
Q Consensus 7 GGIr~g~Di~KAlALGAd~v------~i-g~~~L~al~ 37 (100)
=|+-|+.++..|+.+|++.+ .+ |-.++.++.
T Consensus 111 PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg~~~~ka~~ 148 (211)
T COG0800 111 PGVATPTEIMAALELGASALKFFPAEVVGGPAMLKALA 148 (211)
T ss_pred CCCCCHHHHHHHHHcChhheeecCccccCcHHHHHHHc
Confidence 38899999999999999875 23 556666654
No 303
>KOG0538|consensus
Probab=37.09 E-value=32 Score=27.69 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=24.5
Q ss_pred cccccHHHhhHHHHHHHHHHcCcCCCCCC
Q psy7649 62 DKVHNAYSIFFLELNNLVPTLLLGSIQPP 90 (100)
Q Consensus 62 ~g~~n~~~l~~~e~~e~~~~lG~~s~~~~ 90 (100)
.|++...++.++|+.-.|+-.|++|+.+-
T Consensus 320 ~GV~~vl~iL~~efe~tmaLsGc~sv~ei 348 (363)
T KOG0538|consen 320 AGVKKVLDILRDEFELTMALSGCRSVKEI 348 (363)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence 46777888889999999999999998743
No 304
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=36.83 E-value=28 Score=25.57 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=20.3
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhh
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~i 28 (100)
++-.|.|.|..++-+|+..||+++..
T Consensus 61 ~vGAGTV~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 61 LVGAGTVLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp EEEEES--SHHHHHHHHHHT-SEEEE
T ss_pred eeEEEeccCHHHHHHHHHcCCCEEEC
Confidence 56789999999999999999999853
No 305
>PRK10279 hypothetical protein; Provisional
Probab=36.50 E-value=18 Score=28.09 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.5
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhh
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~i 28 (100)
.++|||+.++.=+-.+..+|||-|..
T Consensus 152 ~~vDGGv~~~~Pv~~a~~~Gad~via 177 (300)
T PRK10279 152 WLVDGAVVNPVPVSLTRALGADIVIA 177 (300)
T ss_pred EEEECccCccccHHHHHHcCCCEEEE
Confidence 67999999999888899999987643
No 306
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.45 E-value=54 Score=24.14 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=24.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
++++.+|||.. .++..-+..|+..++.|+.+.
T Consensus 145 ~~l~ptGGV~~-~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 145 TFFCPTGGISL-KNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred CcEEecCCCCH-HHHHHHHhCCCeEEEEchhhC
Confidence 57899999954 678888888888777665553
No 307
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=36.09 E-value=23 Score=28.30 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=20.1
Q ss_pred CCCChHHHHHHHHhCcchHhhhHHH
Q psy7649 8 GIRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 8 GIr~g~Di~KAlALGAd~v~ig~~~ 32 (100)
|+-+|.|++.++++|.|++=..-|.
T Consensus 243 Gvg~P~~i~~~v~~GvD~FD~~~pt 267 (368)
T TIGR00430 243 GVGTPEDLLNAIRRGIDMFDCVMPT 267 (368)
T ss_pred CCCCHHHHHHHHHcCCCEEEecCcc
Confidence 6789999999999999986444333
No 308
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=36.00 E-value=30 Score=25.42 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=23.3
Q ss_pred CCCCChHHHHHHHHhCcchHhhhHHHHHHH
Q psy7649 7 GGIRYGTDVFKAIGLGAKYVFVGRAALWGL 36 (100)
Q Consensus 7 GGIr~g~Di~KAlALGAd~v~ig~~~L~al 36 (100)
=|+-+|.+|+.+..+|+|.+-...|...|-
T Consensus 119 ~G~~~P~~i~~~v~~GvD~fDs~~p~~~A~ 148 (238)
T PF01702_consen 119 LGVGTPEEILEAVYLGVDLFDSSYPTRLAR 148 (238)
T ss_dssp TTB-SHHHHHHHHHTT--EEEESHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCCcEEcchHHHHHHh
Confidence 477799999999999999988888887764
No 309
>PLN02561 triosephosphate isomerase
Probab=35.07 E-value=25 Score=26.83 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=30.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
++|+..|+|....+.-.+...+.|.+.+|+.-|.
T Consensus 205 i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~ 238 (253)
T PLN02561 205 TRIIYGGSVTGANCKELAAQPDVDGFLVGGASLK 238 (253)
T ss_pred ceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhH
Confidence 4789999999999999889999999999998775
No 310
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=35.03 E-value=1.3e+02 Score=23.39 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=32.0
Q ss_pred CeEEEcCCCCChH-HHHHHHHhCcchHhhhHHHHHHHh
Q psy7649 1 MEVYLDGGIRYGT-DVFKAIGLGAKYVFVGRAALWGLA 37 (100)
Q Consensus 1 i~liasGGIr~g~-Di~KAlALGAd~v~ig~~~L~al~ 37 (100)
+|+..-||=..+. ++-||+.+|..=+.+++.+..+..
T Consensus 207 vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~ 244 (288)
T TIGR00167 207 LPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIAFA 244 (288)
T ss_pred CCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHHHH
Confidence 5889999988885 677899999999999999887754
No 311
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=34.82 E-value=1.3e+02 Score=23.37 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=31.2
Q ss_pred CeEEEcCCCCCh-HHHHHHHHhCcchHhhhHHHHHHHh
Q psy7649 1 MEVYLDGGIRYG-TDVFKAIGLGAKYVFVGRAALWGLA 37 (100)
Q Consensus 1 i~liasGGIr~g-~Di~KAlALGAd~v~ig~~~L~al~ 37 (100)
+|++.-||=..+ .++-||+.+|..=+.+++.+-.+..
T Consensus 204 vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~a~~ 241 (286)
T PRK08610 204 LPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIASA 241 (286)
T ss_pred CCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHHHHH
Confidence 589999998888 4566899999999999998877644
No 312
>PHA00440 host protein H-NS-interacting protein
Probab=34.65 E-value=1.4e+02 Score=19.87 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=22.5
Q ss_pred HHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649 13 TDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL 48 (100)
Q Consensus 13 ~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i 48 (100)
.|.+|-..-|...-..-+.+|......|++|+..+.
T Consensus 30 ~~Lak~v~~GE~~~~~~re~lvqaLT~G~egai~F~ 65 (98)
T PHA00440 30 LDLAKQAGAGEEVNPKDKELLVQALTHGPEGAAAFA 65 (98)
T ss_pred HHHHhhcCCcccCChHHHHHHHHHHhhChHHHHHHH
Confidence 345555555666666667776655556788777664
No 313
>PLN02417 dihydrodipicolinate synthase
Probab=33.79 E-value=43 Score=25.30 Aligned_cols=49 Identities=8% Similarity=0.165 Sum_probs=33.4
Q ss_pred eEEEcCCCCChHHHH----HHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVF----KAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH 53 (100)
Q Consensus 2 ~liasGGIr~g~Di~----KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~ 53 (100)
||++.=|=-+-.|++ .|-.+|||+|.+..|+.+ ...++++.++++.+.+
T Consensus 72 pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~---~~~~~~i~~~f~~va~ 124 (280)
T PLN02417 72 KVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG---KTSQEGLIKHFETVLD 124 (280)
T ss_pred cEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccC---CCCHHHHHHHHHHHHh
Confidence 555544433444444 367899999999988754 3467888888876655
No 314
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.36 E-value=39 Score=26.22 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=25.4
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
++-+|||| |...+..--..|.|.+.+|.+.-
T Consensus 240 ~leaSGGI-~~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 240 ITEASGRI-TPETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred eEEEECCC-CHHHHHHHHhcCCCEEEeChhhc
Confidence 57899999 56777778889999999997553
No 315
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=33.23 E-value=28 Score=27.82 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=21.5
Q ss_pred CCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 8 GIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 8 GIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
|+-+|.|++.++++|.|.+=..-|...
T Consensus 242 Gvg~P~~i~~~v~~GvD~FD~~~ptr~ 268 (367)
T TIGR00449 242 GVGTPELLANAVSLGIDMFDCVAPTRY 268 (367)
T ss_pred CCCCHHHHHHHHHcCCCEEeeCCcccc
Confidence 688999999999999998755444433
No 316
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=32.99 E-value=18 Score=28.86 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=24.4
Q ss_pred EEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649 4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 4 iasGGIr~g~Di~KAlALGAd~v~ig~~~ 32 (100)
+.+....|..|+.+|...|||.|++|-.|
T Consensus 242 iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf 270 (347)
T PRK02615 242 IIGRSTTNPEEMAKAIAEGADYIGVGPVF 270 (347)
T ss_pred EEEEecCCHHHHHHHHHcCCCEEEECCCc
Confidence 55667789999999999999999998433
No 317
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.44 E-value=36 Score=25.07 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=23.0
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHh
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVF 27 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~ 27 (100)
++..|.|.|..++-+|+..||+++.
T Consensus 69 ~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 69 LIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred EEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 5778999999999999999999986
No 318
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.39 E-value=27 Score=28.49 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.9
Q ss_pred EEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649 4 YLDGGIRYGTDVFKAIGLGAKYVFVG 29 (100)
Q Consensus 4 iasGGIr~g~Di~KAlALGAd~v~ig 29 (100)
+.-|+|-|..++.+++.+|||+|.+|
T Consensus 197 vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 197 LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 55789999999999999999998654
No 319
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=32.00 E-value=26 Score=29.81 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=21.0
Q ss_pred CCCCChHHHHHHHHhCcchHhh
Q psy7649 7 GGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 7 GGIr~g~Di~KAlALGAd~v~i 28 (100)
.||++..|+..+..+|||++|+
T Consensus 8 CGit~~eda~~a~~~gaD~iGf 29 (610)
T PRK13803 8 CGIKDSALISKAVDMLPDFIGF 29 (610)
T ss_pred CCCCcHHHHHHHHHcCCCEEEE
Confidence 5999999999999999999998
No 320
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.75 E-value=61 Score=25.18 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=30.3
Q ss_pred CCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHH
Q psy7649 8 GIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLV 52 (100)
Q Consensus 8 GIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~ 52 (100)
-++|..++..|+..|||.++++ ..+++.+.+.++.++
T Consensus 202 Ev~tleea~eA~~~GaD~I~LD--------n~~~e~l~~av~~~~ 238 (288)
T PRK07428 202 ETETLEQVQEALEYGADIIMLD--------NMPVDLMQQAVQLIR 238 (288)
T ss_pred ECCCHHHHHHHHHcCCCEEEEC--------CCCHHHHHHHHHHHH
Confidence 3578899999999999999998 457788888876554
No 321
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=31.73 E-value=32 Score=27.78 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 8 GIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 8 GIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
|+-+|.|++.++++|.|.+=..-|...|
T Consensus 262 GvG~P~di~~~V~~GvD~FDcv~Ptr~A 289 (372)
T PRK01008 262 GIGDLPSIWATVGFGIDSFDSSYPTKAA 289 (372)
T ss_pred cCCCHHHHHHHHHhCCCeeeeccchhhh
Confidence 6779999999999999986555454443
No 322
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]
Probab=31.14 E-value=42 Score=27.24 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=25.6
Q ss_pred CCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 8 GIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 8 GIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
|+-+|.|++.|.++|.|+.-..-|..+|
T Consensus 242 GvG~P~~i~~aV~~GvDmFDcv~ptr~a 269 (372)
T COG0343 242 GVGHPEDIVEAVALGVDMFDCVMPTRYA 269 (372)
T ss_pred cCCCHHHHHHHHHhCCchhhccchhhhc
Confidence 6789999999999999999988888876
No 323
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=31.05 E-value=33 Score=27.40 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=25.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhC--cchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLG--AKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALG--Ad~v~ig~~~L~ 34 (100)
+.|++|||| +...|..-.+.| .|..|+|+.+..
T Consensus 281 vkI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~~ 315 (352)
T PRK07188 281 VKIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLLK 315 (352)
T ss_pred cEEEEeCCC-CHHHHHHHHHcCCCccEEecCccccc
Confidence 469999999 556665556678 599999987764
No 324
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=30.80 E-value=35 Score=24.89 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=24.2
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFVG 29 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~ig 29 (100)
++..|.|-+..|+-.|++.||+++..+
T Consensus 64 ~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 64 LIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred EEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 567899999999999999999999774
No 325
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=30.45 E-value=30 Score=26.90 Aligned_cols=29 Identities=10% Similarity=-0.018 Sum_probs=24.6
Q ss_pred cccccHHHhhHHHHHHHHHHcCcCCCCCC
Q psy7649 62 DKVHNAYSIFFLELNNLVPTLLLGSIQPP 90 (100)
Q Consensus 62 ~g~~n~~~l~~~e~~e~~~~lG~~s~~~~ 90 (100)
.++.++.+.+..|++.+|..+|++|+++.
T Consensus 296 ~~~~~~i~~~~~el~~~m~~~G~~si~el 324 (326)
T cd02811 296 EAVIETIEQIIEELRTAMFLTGAKNLAEL 324 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 35568888999999999999999998753
No 326
>PRK08227 autoinducer 2 aldolase; Validated
Probab=29.02 E-value=1.1e+02 Score=23.55 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=33.0
Q ss_pred CeEEEcCCCCChH-HH----HHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGT-DV----FKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQS 50 (100)
Q Consensus 1 i~liasGGIr~g~-Di----~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~ 50 (100)
+||++.||=++.. |+ -.|+.-||.-|.+||-+-.. ..+..+.+.+..
T Consensus 193 vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~---~~p~~~~~al~~ 244 (264)
T PRK08227 193 VPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS---EHPVAMIKAVHA 244 (264)
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc---CCHHHHHHHHHH
Confidence 5899999988643 23 35888999999999976543 455555555543
No 327
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=28.91 E-value=40 Score=26.46 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=25.3
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
.+-+|||| |...+..--..|+|.+.+|.+.-
T Consensus 254 ~ieaSGGI-~~~ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 254 LLEVSGNV-TLETLREFAETGVDFISVGALTK 284 (296)
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEeCcccc
Confidence 57899999 56778788889999999987543
No 328
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.70 E-value=41 Score=26.32 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=24.8
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
.+-+|||| |...+..-...|.|.+.+|.+..
T Consensus 243 ~leaSGGI-~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 243 RIECSGNI-DMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEeCcccc
Confidence 57899999 56677677779999999997654
No 329
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=28.65 E-value=20 Score=27.24 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=30.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
++|+..|+|....+.--+...+.|.+.+|+..|.
T Consensus 204 ~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~ 237 (250)
T PRK00042 204 VRILYGGSVKPDNAAELMAQPDIDGALVGGASLK 237 (250)
T ss_pred ceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence 4789999999999999999999999999998774
No 330
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=28.51 E-value=45 Score=27.64 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.9
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhh
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~i 28 (100)
+|||+ |-+-|..++..++..|||+|-+
T Consensus 267 ~~vi~-g~~~t~~~~~~l~~~G~d~i~v 293 (475)
T TIGR01303 267 VPIVA-GNVVSAEGVRDLLEAGANIIKV 293 (475)
T ss_pred CeEEE-eccCCHHHHHHHHHhCCCEEEE
Confidence 46777 6699999999999999999863
No 331
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=28.50 E-value=2e+02 Score=22.88 Aligned_cols=25 Identities=8% Similarity=0.015 Sum_probs=22.3
Q ss_pred HHHHHHHHhCcchHhhhHHHHHHHh
Q psy7649 13 TDVFKAIGLGAKYVFVGRAALWGLA 37 (100)
Q Consensus 13 ~Di~KAlALGAd~v~ig~~~L~al~ 37 (100)
.|+-||+.+|..=|.+++-+..+..
T Consensus 252 e~~~kai~~GI~KINi~Tdl~~a~~ 276 (321)
T PRK07084 252 EQLRKAAKSAVCKINIDSDGRLAMT 276 (321)
T ss_pred HHHHHHHHcCCceeccchHHHHHHH
Confidence 7888999999999999999887754
No 332
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.47 E-value=2.6e+02 Score=21.03 Aligned_cols=21 Identities=14% Similarity=-0.058 Sum_probs=14.3
Q ss_pred HHHHHHHhCcchHhhhHHHHH
Q psy7649 14 DVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 14 Di~KAlALGAd~v~ig~~~L~ 34 (100)
.++-++-.++-.+++|-.|.+
T Consensus 24 rlv~~lL~~~~V~~lGy~f~~ 44 (211)
T COG3167 24 RLVFCLLAVAAVLGLGYAFYL 44 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 355677777777777766654
No 333
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=28.34 E-value=2e+02 Score=23.10 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=31.3
Q ss_pred CeEEEcCCCCCh----------------------HHHHHHHHhCcchHhhhHHHHHHHh
Q psy7649 1 MEVYLDGGIRYG----------------------TDVFKAIGLGAKYVFVGRAALWGLA 37 (100)
Q Consensus 1 i~liasGGIr~g----------------------~Di~KAlALGAd~v~ig~~~L~al~ 37 (100)
+|++.-||=-.| .|+-||+.+|-.=|.+++-+..+..
T Consensus 227 vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~ 285 (347)
T PRK13399 227 THLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMT 285 (347)
T ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHH
Confidence 578888887666 6789999999999999999887754
No 334
>KOG2334|consensus
Probab=28.27 E-value=52 Score=27.51 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=29.5
Q ss_pred CeEEEcCCCCC---hHHHHHH-HHhCcchHhhhHHHHHHH
Q psy7649 1 MEVYLDGGIRY---GTDVFKA-IGLGAKYVFVGRAALWGL 36 (100)
Q Consensus 1 i~liasGGIr~---g~Di~KA-lALGAd~v~ig~~~L~al 36 (100)
||||+-||..+ +.|+-+- ...|++.|.++|...+.-
T Consensus 210 V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~ 249 (477)
T KOG2334|consen 210 VPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNP 249 (477)
T ss_pred ceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCC
Confidence 68999999999 8888765 467999999999666543
No 335
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.25 E-value=1.1e+02 Score=22.63 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=22.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~ 32 (100)
++++.+|||.- .++-.-+..|+..++.|+.+
T Consensus 156 ~~~~ptGGV~~-~ni~~~l~ag~v~~vggs~L 186 (212)
T PRK05718 156 VRFCPTGGISP-ANYRDYLALPNVLCIGGSWM 186 (212)
T ss_pred CeEEEeCCCCH-HHHHHHHhCCCEEEEEChHh
Confidence 47899999954 77888888896555544443
No 336
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=27.86 E-value=30 Score=26.37 Aligned_cols=64 Identities=11% Similarity=0.022 Sum_probs=36.7
Q ss_pred EEEcCCCCCh-HH-HHHHHHhCcc-hHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHH
Q psy7649 3 VYLDGGIRYG-TD-VFKAIGLGAK-YVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYS 69 (100)
Q Consensus 3 liasGGIr~g-~D-i~KAlALGAd-~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~ 69 (100)
++.-|.-.-. .+ +=+|||+||| +|.+... +++......+...+....+++...+.++|.++...
T Consensus 59 vvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~---~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~ 125 (256)
T PRK03359 59 ALSVGGKALTNAKGRKDVLSRGPDELIVVIDD---QFEQALPQQTASALAAAAQKAGFDLILCGDGSSDL 125 (256)
T ss_pred EEEECCcchhhHHHHHHHHHcCCCEEEEEecC---cccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccC
Confidence 4444554422 23 4469999999 4444322 11222345556666666666667778888777654
No 337
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=27.08 E-value=39 Score=24.97 Aligned_cols=26 Identities=42% Similarity=0.543 Sum_probs=22.6
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhh
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~i 28 (100)
.++|||+.+..=+-.|+..|++-+.+
T Consensus 153 ~yvDGGv~~~~P~~~a~~~g~~~iiv 178 (266)
T cd07208 153 PYVDGGLSDSIPVDKAIEDGADKIVV 178 (266)
T ss_pred EEEcCccCcchhHHHHHHcCCCeEEE
Confidence 57899999999998999999997754
No 338
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=27.07 E-value=40 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=23.0
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFVG 29 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~ig 29 (100)
.+.-|+|-|..|...++..|||+|.+|
T Consensus 291 ~vi~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 291 DVIGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred cEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 345689999999999999999999543
No 339
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=26.96 E-value=43 Score=25.39 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=36.7
Q ss_pred CeEEEcCCCCChHHHH----HHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHh
Q psy7649 1 MEVYLDGGIRYGTDVF----KAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL 56 (100)
Q Consensus 1 i~liasGGIr~g~Di~----KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~ 56 (100)
+|||+.-|- +-.|.+ .|-.+|||++.+-.|+... .+++++.++++.+.+...
T Consensus 70 ~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~---~~~~~i~~~f~~v~~~~~ 125 (289)
T cd00951 70 VPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTE---APQEGLYAHVEAVCKSTD 125 (289)
T ss_pred CCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhcCC
Confidence 467776664 545544 3678999999998887543 367889988877766543
No 340
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=26.67 E-value=48 Score=26.15 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=24.6
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
++-+|||| |...+..-...|.|.+.+|.+.-
T Consensus 264 ~lEaSGGI-t~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 264 ETEASGNV-TLDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred eEEEECCC-CHHHHHHHHHcCCCEEEeCcccc
Confidence 57899999 56677777788999999987543
No 341
>PTZ00333 triosephosphate isomerase; Provisional
Probab=26.59 E-value=42 Score=25.56 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=30.1
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
++|+..|+|....+.--+...+.|.+.+|+.-|.
T Consensus 208 ~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl~ 241 (255)
T PTZ00333 208 TRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLK 241 (255)
T ss_pred ceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhhh
Confidence 4789999999999988888999999999998774
No 342
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=26.50 E-value=27 Score=25.95 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.3
Q ss_pred EEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649 4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 4 iasGGIr~g~Di~KAlALGAd~v~ig~~~ 32 (100)
+..-+..+-.++.+|..+|||.|++|.-|
T Consensus 106 iIG~S~h~~eea~~A~~~g~DYv~~Gpif 134 (211)
T COG0352 106 IIGLSTHDLEEALEAEELGADYVGLGPIF 134 (211)
T ss_pred EEEeecCCHHHHHHHHhcCCCEEEECCcC
Confidence 45556779999999999999999999644
No 343
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=26.49 E-value=69 Score=27.16 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=24.4
Q ss_pred CCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 8 GIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 8 GIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
|+-+|.|++-+.++|.|.+=-..|.++|
T Consensus 122 GvG~P~~i~~~V~lGvDlFD~v~ptr~A 149 (540)
T TIGR00432 122 GCGHPMLFALAVALGCDLFDSAAYALYA 149 (540)
T ss_pred CCCCHHHHHHHHHhCCCcccccHHHHHH
Confidence 7889999999999999998877777754
No 344
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=25.99 E-value=27 Score=25.46 Aligned_cols=33 Identities=36% Similarity=0.472 Sum_probs=25.7
Q ss_pred EEEcCCCCC---------hHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 3 VYLDGGIRY---------GTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 3 liasGGIr~---------g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
++.+.||+- +.+.-.++..|++.+.+||++..+
T Consensus 165 ~~ltPGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a 206 (216)
T cd04725 165 LILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQA 206 (216)
T ss_pred eEEcCCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccC
Confidence 477889984 345666777899999999999864
No 345
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=25.91 E-value=39 Score=26.12 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=24.9
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~ 31 (100)
.+-+|||| |...+..-...|+|.+.+|.+
T Consensus 237 ~leasGGI-~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 237 TLAAAGGI-NPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 47899999 678888888999999988865
No 346
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=25.86 E-value=66 Score=23.87 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=34.8
Q ss_pred eEEEcCCCCChHHHH----HHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649 2 EVYLDGGIRYGTDVF----KAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55 (100)
Q Consensus 2 ~liasGGIr~g~Di~----KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el 55 (100)
||++.-|=-+-.|.+ .|-.+|||++.+..|+.+. ..++++.++...+.+..
T Consensus 68 ~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~---~~~~~~~~~~~~ia~~~ 122 (281)
T cd00408 68 PVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNK---PSQEGIVAHFKAVADAS 122 (281)
T ss_pred eEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcC
Confidence 555554443444333 4677899999999888755 46788888887776653
No 347
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=25.45 E-value=25 Score=28.24 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=17.4
Q ss_pred hHHHHHHHHhCcchHhhhHHH
Q psy7649 12 GTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 12 g~Di~KAlALGAd~v~ig~~~ 32 (100)
+.-|++||..|||.|.-||..
T Consensus 150 a~pI~~AL~~GADIVI~GR~~ 170 (362)
T PF07287_consen 150 AEPIVEALEAGADIVITGRVA 170 (362)
T ss_pred hHHHHHHHHcCCCEEEeCccc
Confidence 345889999999999998843
No 348
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=25.33 E-value=1.2e+02 Score=25.56 Aligned_cols=48 Identities=6% Similarity=-0.079 Sum_probs=37.3
Q ss_pred hHhhhH--HHHHHH--hccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649 25 YVFVGR--AALWGL--AHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF 72 (100)
Q Consensus 25 ~v~ig~--~~L~al--~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~ 72 (100)
-+++++ |-|..- -...++.|.+++.-+.+|++..|...|..++.++.-
T Consensus 424 p~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l~el~g 475 (485)
T COG0069 424 PVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSELIG 475 (485)
T ss_pred CceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhc
Confidence 344444 444433 345689999999999999999999999999999874
No 349
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=25.22 E-value=70 Score=24.39 Aligned_cols=52 Identities=10% Similarity=-0.001 Sum_probs=36.0
Q ss_pred CeEEEcCCCCChHHHH----HHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVF----KAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55 (100)
Q Consensus 1 i~liasGGIr~g~Di~----KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el 55 (100)
+||++.-|-.+-.|.+ +|-++|||++.+..|+.+. ..++++.++...+.+..
T Consensus 70 ~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~---~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 70 IPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNK---PNQEALYDHFAEVADAV 125 (294)
T ss_pred CcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCC---CCHHHHHHHHHHHHHhc
Confidence 3566554444444443 5688999999999998643 45788888887776654
No 350
>PLN02979 glycolate oxidase
Probab=24.91 E-value=41 Score=27.23 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=23.9
Q ss_pred hcccccHHHhhHHHHHHHHHHcCcCCCCC
Q psy7649 61 ADKVHNAYSIFFLELNNLVPTLLLGSIQP 89 (100)
Q Consensus 61 l~g~~n~~~l~~~e~~e~~~~lG~~s~~~ 89 (100)
-.|+.+..+.+..|++..|..+|..++.+
T Consensus 319 ~~Gv~~~l~~l~~El~~~m~l~G~~~i~e 347 (366)
T PLN02979 319 EAGVRKVLQMLRDEFELTMALSGCRSLKE 347 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 34677888889999999999999887663
No 351
>PLN02429 triosephosphate isomerase
Probab=24.83 E-value=29 Score=27.49 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=30.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
++|+..|+|..+.+.-.+...+.|.+.+|+..|.
T Consensus 264 irILYGGSV~~~N~~el~~~~diDG~LVGgASL~ 297 (315)
T PLN02429 264 TRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLK 297 (315)
T ss_pred ceEEEcCccCHHHHHHHhcCCCCCEEEeecceec
Confidence 4789999999999998888899999999998874
No 352
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=24.61 E-value=1.2e+02 Score=22.84 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=28.9
Q ss_pred EcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHH
Q psy7649 5 LDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51 (100)
Q Consensus 5 asGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l 51 (100)
....+|+..++..++ |+|.|-+.-.++..+ |+..+-+.|
T Consensus 212 L~AS~r~~~~v~~l~--G~d~vT~~p~v~~~l------~~~~f~~d~ 250 (252)
T cd00439 212 LWASFSDTLYVAPLI--GCDTVTTMPDQALEA------GVDKFKKDF 250 (252)
T ss_pred EEEeeCCHHHHHHhh--CCCeeecCHHHHHHH------HHHHHHHHh
Confidence 445688999997655 999999998888776 555554433
No 353
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=24.39 E-value=42 Score=27.01 Aligned_cols=30 Identities=10% Similarity=-0.025 Sum_probs=24.8
Q ss_pred HhcccccHHHhhHHHHHHHHHHcCcCCCCC
Q psy7649 60 VADKVHNAYSIFFLELNNLVPTLLLGSIQP 89 (100)
Q Consensus 60 ~l~g~~n~~~l~~~e~~e~~~~lG~~s~~~ 89 (100)
...|+.++.+.+..|++..|..+|..++.+
T Consensus 319 G~~gv~~~l~~l~~el~~~m~l~G~~~i~~ 348 (367)
T PLN02493 319 GEAGVRKVLQMLRDEFELTMALSGCRSLKE 348 (367)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 345677888899999999999999887763
No 354
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=24.34 E-value=23 Score=27.11 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=27.2
Q ss_pred EEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
-.|||=|+-.++++|||..-+++.+--||-
T Consensus 139 sLSGGERRR~EIARaLa~~P~fiLLDEPFA 168 (243)
T COG1137 139 SLSGGERRRVEIARALAANPKFILLDEPFA 168 (243)
T ss_pred ccccchHHHHHHHHHHhcCCCEEEecCCcc
Confidence 369999999999999999999999988884
No 355
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=24.24 E-value=2.5e+02 Score=21.64 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=31.7
Q ss_pred CeEEEcCCCCChHH-HHHHHHhCcchHhhhHHHHHHHh
Q psy7649 1 MEVYLDGGIRYGTD-VFKAIGLGAKYVFVGRAALWGLA 37 (100)
Q Consensus 1 i~liasGGIr~g~D-i~KAlALGAd~v~ig~~~L~al~ 37 (100)
+|+..-||=-++.| +-||+.+|..=+.+++.+..+..
T Consensus 197 vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~ 234 (276)
T cd00947 197 VPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLAFT 234 (276)
T ss_pred CCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHH
Confidence 58899999888855 77999999999999999887644
No 356
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.14 E-value=57 Score=25.32 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=24.3
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~ 32 (100)
.+.+|||| |...+..-...|.|.+.+|.+.
T Consensus 239 ~leaSGgI-~~~ni~~yA~tGVD~Is~galt 268 (281)
T PRK06543 239 IVEASGNV-NLNTVGAIASTGVDVISVGALT 268 (281)
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 47899999 5677777777999999998754
No 357
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=24.04 E-value=1.8e+02 Score=19.80 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=16.9
Q ss_pred hHHHHHHHHhCcchHhhhHHHHHHHh
Q psy7649 12 GTDVFKAIGLGAKYVFVGRAALWGLA 37 (100)
Q Consensus 12 g~Di~KAlALGAd~v~ig~~~L~al~ 37 (100)
|++=.||+-+|||+++ -.|++.++
T Consensus 65 pL~e~~Aie~Gaell~--E~fiF~Va 88 (134)
T PF07047_consen 65 PLNEEKAIELGAELLG--EAFIFSVA 88 (134)
T ss_pred CCCHHHHHHHHHHHHH--HHHHHHHH
Confidence 5555799999999975 44555544
No 358
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=23.93 E-value=59 Score=26.17 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=25.3
Q ss_pred HhcccccHHHhhHHHHHHHHHHcCcCCCCC
Q psy7649 60 VADKVHNAYSIFFLELNNLVPTLLLGSIQP 89 (100)
Q Consensus 60 ~l~g~~n~~~l~~~e~~e~~~~lG~~s~~~ 89 (100)
...|+.++.+.+..|++..|..+|.+++.+
T Consensus 323 G~~gv~~~l~~l~~El~~~M~l~G~~~i~e 352 (367)
T TIGR02708 323 GSQGARQVFEYLNKELKRVMQLTGTQTIED 352 (367)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 345677888899999999999999998874
No 359
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=23.91 E-value=81 Score=25.75 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=22.3
Q ss_pred hHHHHHHHHh---CcchHhhhHHHHHHHhc
Q psy7649 12 GTDVFKAIGL---GAKYVFVGRAALWGLAH 38 (100)
Q Consensus 12 g~Di~KAlAL---GAd~v~ig~~~L~al~~ 38 (100)
|.+++|++-- .+++||+|++-|.+.++
T Consensus 17 Ga~LikaLk~~~~~~efvGvgG~~m~aeG~ 46 (381)
T COG0763 17 GAGLIKALKARYPDVEFVGVGGEKMEAEGL 46 (381)
T ss_pred HHHHHHHHHhhCCCeEEEEeccHHHHhccC
Confidence 5688888877 88999999999977554
No 360
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=23.26 E-value=79 Score=26.42 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=24.4
Q ss_pred CCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 8 GIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 8 GIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
|+-+|.|++-+.++|.|.+=...|.+.|
T Consensus 226 GvG~P~~i~~~V~lGvDlFD~v~ptr~A 253 (487)
T PRK13533 226 GAGHPMMFALAVALGCDLFDSAAYALYA 253 (487)
T ss_pred CCCCHHHHHHHHHhCCCceeccHHHHHH
Confidence 7889999999999999998777777765
No 361
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=23.22 E-value=2.4e+02 Score=21.77 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=30.6
Q ss_pred CeEEEcCCCCChHHH-HHHHHhCcchHhhhHHHHHHHh
Q psy7649 1 MEVYLDGGIRYGTDV-FKAIGLGAKYVFVGRAALWGLA 37 (100)
Q Consensus 1 i~liasGGIr~g~Di-~KAlALGAd~v~ig~~~L~al~ 37 (100)
+|++.-||=..|.|- -||..+|-.=|.+++-+..+..
T Consensus 201 iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~ 238 (282)
T TIGR01858 201 VPLVLHGASDVPDEDVRRTIELGICKVNVATELKIAFS 238 (282)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHH
Confidence 578888888777654 5799999999999999987754
No 362
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=23.04 E-value=2.1e+02 Score=22.16 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=30.4
Q ss_pred CeEEEcCCCCChHHH-HHHHHhCcchHhhhHHHHHHHh
Q psy7649 1 MEVYLDGGIRYGTDV-FKAIGLGAKYVFVGRAALWGLA 37 (100)
Q Consensus 1 i~liasGGIr~g~Di-~KAlALGAd~v~ig~~~L~al~ 37 (100)
+|++.-||=-.|.|- -||..+|-.=|.+++-+..+..
T Consensus 203 vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a~~ 240 (286)
T PRK12738 203 VPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFA 240 (286)
T ss_pred CCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHH
Confidence 578888887777655 4799999999999999988755
No 363
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=22.78 E-value=58 Score=25.80 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=24.1
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW 34 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~ 34 (100)
.+.+|||| |...+..--.. .|.+++|+.+..
T Consensus 263 ~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~ 293 (343)
T PRK08662 263 KIFVSGGL-DPERIRELRDV-VDGFGVGTYISF 293 (343)
T ss_pred EEEEeCCC-CHHHHHHHHHh-CCEEEcCccccC
Confidence 58999999 66666655556 999999987764
No 364
>PRK10119 putative hydrolase; Provisional
Probab=22.54 E-value=2.7e+02 Score=20.91 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=13.1
Q ss_pred HHhCcchHhhhHHHHHHHh
Q psy7649 19 IGLGAKYVFVGRAALWGLA 37 (100)
Q Consensus 19 lALGAd~v~ig~~~L~al~ 37 (100)
=|+|| +|++|.|.++=.
T Consensus 130 DAiGA--IGIaR~f~~gG~ 146 (231)
T PRK10119 130 EALGA--IGLARVFAVSGA 146 (231)
T ss_pred Hhcch--HHHHHHHHHHHH
Confidence 36686 899999998743
No 365
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=22.36 E-value=63 Score=24.66 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=21.9
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhh
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~i 28 (100)
+.+|||+-+..=+-.+..+|++-|..
T Consensus 161 ~~vDGGv~dnlPv~~~~~~G~~~ii~ 186 (269)
T cd07227 161 MLLDGGYMDNLPVSPMRSLGIRDIFA 186 (269)
T ss_pred EEEcccCCccHhHHHHHHcCCCEEEE
Confidence 67999999988888888999986643
No 366
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.14 E-value=64 Score=25.29 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=24.6
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L 33 (100)
.+-+|||| |...+..--..|.|.+.+|.+.-
T Consensus 251 ~lEaSGGI-t~~ni~~yA~tGVD~IS~galth 281 (294)
T PRK06978 251 VLEVSGGV-NFDTVRAFAETGVDRISIGALTK 281 (294)
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEeCcccc
Confidence 57899999 56777777778999999986543
No 367
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=22.00 E-value=2.7e+02 Score=21.48 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=31.5
Q ss_pred CeEEEcCCCCChH-HHHHHHHhCcchHhhhHHHHHHHh
Q psy7649 1 MEVYLDGGIRYGT-DVFKAIGLGAKYVFVGRAALWGLA 37 (100)
Q Consensus 1 i~liasGGIr~g~-Di~KAlALGAd~v~ig~~~L~al~ 37 (100)
+|+..-||=..+. |+-|++.+|..=+.+++-+..+..
T Consensus 206 iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~ 243 (287)
T PF01116_consen 206 IPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRRAFT 243 (287)
T ss_dssp SEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHHHHH
Confidence 5889999988887 677999999999999999988754
No 368
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=21.94 E-value=69 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.6
Q ss_pred eEEEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649 2 EVYLDGGIRYGTDVFKAIGLGAKYVFVG 29 (100)
Q Consensus 2 ~liasGGIr~g~Di~KAlALGAd~v~ig 29 (100)
|.+..|.|-|+.++.+++..|||.+-+|
T Consensus 138 ~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 138 SFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 4678888999999999999999998655
No 369
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=21.92 E-value=47 Score=26.55 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=31.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a 35 (100)
++|+..|+|..+.+.--+...+.|.+.+|+..|.+
T Consensus 214 v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~ 248 (355)
T PRK14905 214 IPVLYGGSVNLENANELIMKPHIDGLFIGRSAWDA 248 (355)
T ss_pred eeEEEeCcCCHHHHHHHhcCCCCCEEEechhhccH
Confidence 47899999999999988899999999999988854
No 370
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=21.74 E-value=50 Score=25.56 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhh
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFV 28 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~i 28 (100)
.++|||+.+..=+-.|..+|+|-+.+
T Consensus 168 ~~vDGGv~~n~Pv~~a~~~g~~~ii~ 193 (306)
T cd07225 168 LLMDGGYINNLPADVARSMGAKTVIA 193 (306)
T ss_pred EEEeccccCcchHHHHHHCCcCEEEE
Confidence 57999999877777788899986543
No 371
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=21.22 E-value=33 Score=25.36 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=53.0
Q ss_pred EcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhH-----------HH-Hhccc--------
Q psy7649 5 LDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILP-----------EA-VADKV-------- 64 (100)
Q Consensus 5 asGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~-----------~m-~l~g~-------- 64 (100)
.|||-+.-.-+++||+..++.+.+--|+-. |-....+.+.+.+..+.++-.. .. .+..+
T Consensus 116 LSgGe~qrv~iaraL~~~p~llllDEPt~~-LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 116 LSGGELQRVAIAACLSKDADIYLLDEPSAY-LDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 477777778888888888888877665532 2222234455555555432111 11 11111
Q ss_pred ----ccHHHhhHHHHHHHHHHcCcCCC-CCCCccCCCCCC
Q psy7649 65 ----HNAYSIFFLELNNLVPTLLLGSI-QPPSKRLAPNRL 99 (100)
Q Consensus 65 ----~n~~~l~~~e~~e~~~~lG~~s~-~~~~~~~~~~~~ 99 (100)
.+-..-....+..++..+++.-. ++..|||-+|..
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~ 234 (246)
T cd03237 195 VNGVANPPQSLRSGMNRFLKNLDITFRRDPETGRPRINKL 234 (246)
T ss_pred eEEEeCCchHHHHHHHHHHHHCCCEEecCcccCCCCCCCc
Confidence 11111122467777777887744 477999999853
No 372
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=21.12 E-value=67 Score=24.26 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=16.3
Q ss_pred HHHHhCcchHhhhHHHHHH
Q psy7649 17 KAIGLGAKYVFVGRAALWG 35 (100)
Q Consensus 17 KAlALGAd~v~ig~~~L~a 35 (100)
-|..-|||.+.+||++..+
T Consensus 202 ~A~~~Gad~ivVGR~I~~a 220 (240)
T COG0284 202 EAVRAGADYIVVGRPITQA 220 (240)
T ss_pred HHHhcCCCEEEEChhhhcC
Confidence 4566899999999999876
No 373
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=20.51 E-value=72 Score=25.69 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=22.7
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFVG 29 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~ig 29 (100)
.+.-|-|-|+.++..++..|||.+-+|
T Consensus 152 ~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 152 TIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred eEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 455667999999999999999998554
No 374
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=20.48 E-value=60 Score=24.53 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHhCcchHhhhHHH
Q psy7649 9 IRYGTDVFKAIGLGAKYVFVGRAA 32 (100)
Q Consensus 9 Ir~g~Di~KAlALGAd~v~ig~~~ 32 (100)
..|+.++-..-.+|||+|+|.+..
T Consensus 159 fET~AEir~~r~~GaD~VGMS~vp 182 (237)
T TIGR01698 159 YETPAEIRMAGILGADLVGMSTVP 182 (237)
T ss_pred cCCHHHHHHHHHcCCCEeccCchH
Confidence 468888888889999999998643
No 375
>PRK15452 putative protease; Provisional
Probab=20.42 E-value=42 Score=27.58 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=18.4
Q ss_pred CChHHHHHHHHhCcchHhhhHH
Q psy7649 10 RYGTDVFKAIGLGAKYVFVGRA 31 (100)
Q Consensus 10 r~g~Di~KAlALGAd~v~ig~~ 31 (100)
.+...+-.|+..|||+|++|.+
T Consensus 11 g~~e~l~aAi~~GADaVY~G~~ 32 (443)
T PRK15452 11 GTLKNMRYAFAYGADAVYAGQP 32 (443)
T ss_pred CCHHHHHHHHHCCCCEEEECCC
Confidence 3667777899999999999865
No 376
>KOG3111|consensus
Probab=20.33 E-value=95 Score=23.48 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=32.7
Q ss_pred EEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHh
Q psy7649 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL 56 (100)
Q Consensus 3 liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~ 56 (100)
+-+|||+. +.-|-|+..-||++...|+.+..+ ..+ .+.+..++++..
T Consensus 172 ievDGGv~-~~ti~~~a~AGAN~iVaGsavf~a---~d~---~~vi~~lr~~v~ 218 (224)
T KOG3111|consen 172 IEVDGGVG-PSTIDKAAEAGANMIVAGSAVFGA---ADP---SDVISLLRNSVE 218 (224)
T ss_pred EEecCCcC-cchHHHHHHcCCCEEEecceeecC---CCH---HHHHHHHHHHHh
Confidence 45899994 567889999999999999877654 334 334444555443
No 377
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.03 E-value=3.2e+02 Score=21.93 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=29.7
Q ss_pred CeEEEcCCCCCh----------------------HHHHHHHHhCcchHhhhHHHHHHHh
Q psy7649 1 MEVYLDGGIRYG----------------------TDVFKAIGLGAKYVFVGRAALWGLA 37 (100)
Q Consensus 1 i~liasGGIr~g----------------------~Di~KAlALGAd~v~ig~~~L~al~ 37 (100)
+|++.-||=-.| .|+-||+.+|..=|.+++-+..+..
T Consensus 227 vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~ 285 (347)
T PRK09196 227 THLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMT 285 (347)
T ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHHHHH
Confidence 477888876554 4578999999999999999887754
Done!