RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7649
(100 letters)
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 91.0 bits (227), Expect = 1e-23
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
+EVY+DGG+R GTDV KA+ LGA+ +F+GR LWGLA G +G VL L
Sbjct: 273 IEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDIL 323
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 90.5 bits (225), Expect = 5e-23
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
+EV++DGG+R GTDV KA+ LGAK V +GR L+ + G NG + ++ L
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEIL 454
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 89.1 bits (222), Expect = 7e-23
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
+ + D G+R G V KA+ GA V +GR L+GLA G GA VL
Sbjct: 285 VPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYF 335
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 89.2 bits (222), Expect = 8e-23
Identities = 31/51 (60%), Positives = 37/51 (72%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
+EV+LDGG+R GTDV KA+ LGAK VFVGR +WGLA G G VL+ L
Sbjct: 308 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEIL 358
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 89.1 bits (222), Expect = 9e-23
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
+ V+LDGG+R GTDVFKA+ LGA VF+GR ++ LA G G +VLQ +
Sbjct: 281 IPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMM 331
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing
enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas
putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A*
2a7p_A* 2a85_A* 2a7n_A*
Length = 380
Score = 86.9 bits (216), Expect = 6e-22
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
V +D G R G+D+ KA+ LGA+ V +GRA L+GLA G G VL L
Sbjct: 279 KPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLL 329
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 72.5 bits (178), Expect = 8e-17
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+E+ GGIR+ D+ KA+ LGAK V + R L + + ++ +
Sbjct: 279 VEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDL 333
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 70.9 bits (174), Expect = 4e-16
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+ GG++ DV KAI LGA + L L SG G +Q ++ ++
Sbjct: 252 STMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEEL 306
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 61.4 bits (149), Expect = 7e-13
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+ GGIR G D KAI LGA + L G + + ++ ++
Sbjct: 268 SFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIE-GKESLEQFFRKIIFEL 321
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 58.4 bits (141), Expect = 8e-12
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+ + GG+ GTD KA+ LGA + V R L G+ A + + ++
Sbjct: 257 LPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALE-GAERVAAWIGDYLEEL 310
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Length = 361
Score = 35.7 bits (83), Expect = 9e-04
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGI+ D+ KA+ GA +V +G
Sbjct: 205 DGGIKTSGDIVKALAFGADFVMIG 228
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
nucleotides, nucleo nucleoside interconversions, spine,
structural genomics; 1.80A {Bacillus anthracis} PDB:
2a1y_A*
Length = 336
Score = 35.7 bits (83), Expect = 0.001
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIR DV K+I GA V +G
Sbjct: 216 DGGIRTNGDVAKSIRFGATMVMIG 239
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 34.9 bits (81), Expect = 0.002
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGR 30
DGGI Y + A+ +GA ++ +GR
Sbjct: 358 DGGIVYDYHMTLALAMGADFIMLGR 382
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 34.8 bits (80), Expect = 0.002
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DG I DV KAI GA V +G
Sbjct: 283 DGSIENSGDVVKAIACGADAVVLG 306
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGI+ V KA+ LGA V +G
Sbjct: 364 DGGIQTVGHVVKALALGASTVMMG 387
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase,
potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB:
2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Length = 351
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGG DV KA G GA +V +G
Sbjct: 229 DGGCSCPGDVAKAFGAGADFVMLG 252
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM
barrel, IMPDH, IMP dehydrogenase, LOO purine
biosynthesis, oxidoreductase; 2.40A {Borrelia
burgdorferi} SCOP: c.1.5.1
Length = 404
Score = 34.9 bits (81), Expect = 0.002
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIR+ DV KAI GA V +G
Sbjct: 262 DGGIRFSGDVVKAIAAGADSVMIG 285
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIRY D+ KAI GA V +G
Sbjct: 334 DGGIRYSGDIVKAIAAGADAVMLG 357
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold,
oxidoreductase; 3.19A {Cryptosporidium parvum}
Length = 400
Score = 34.5 bits (80), Expect = 0.003
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIRY D+ KA+ +GA V +G
Sbjct: 252 DGGIRYSGDIGKALAVGASSVMIG 275
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio
cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A
Length = 366
Score = 34.1 bits (79), Expect = 0.003
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIR+ D+ KAI GA V VG
Sbjct: 217 DGGIRFSGDISKAIAAGASCVMVG 240
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIRY D+ KA+ GA+ V VG
Sbjct: 346 DGGIRYSGDIVKALAAGAESVMVG 369
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGI+Y D+ KA+ GA V +G
Sbjct: 365 DGGIKYSGDMVKALAAGAHVVMLG 388
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIR+ D+ KAI GA V VG
Sbjct: 340 DGGIRFSGDISKAIAAGASCVMVG 363
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGI+Y D+ KA+ G V +G
Sbjct: 342 DGGIKYSGDIVKALAAGGNAVMLG 365
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 34.1 bits (79), Expect = 0.003
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGIRY D+ KA+ +GA V +G
Sbjct: 213 DGGIRYSGDIGKALAVGASSVMIG 236
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 30.8 bits (69), Expect = 0.039
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRA 31
+G +AI GA V VG A
Sbjct: 187 EGRYNSPALAAEAIRYGAWAVTVGSA 212
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 29.9 bits (67), Expect = 0.090
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31
+E+ + GGI ++ G+ K GRA
Sbjct: 167 IELSITGGIVPED-IYLFEGIKTKTFIAGRA 196
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 29.6 bits (66), Expect = 0.12
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31
V + GG+ T + G+ GR
Sbjct: 169 FRVSVTGGLSVDT-LKLFEGVDVFTFIAGRG 198
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 29.2 bits (65), Expect = 0.16
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRA 31
+G AI GA V VG A
Sbjct: 187 EGRYNTPALAANAIEHGAWAVTVGSA 212
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 28.8 bits (64), Expect = 0.23
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31
+V + GG+ + G+ GR+
Sbjct: 164 FKVTVTGGLALED-LPLFKGIPIHVFIAGRS 193
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 28.4 bits (63), Expect = 0.31
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRA 31
+G I + K LG + VG A
Sbjct: 192 EGKIHSPEEAKKINDLGVAGIVVGGA 217
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 27.7 bits (61), Expect = 0.49
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31
+ + GG++ T + GA+ G A
Sbjct: 159 VPFSVAGGVKVAT-IPAVQKAGAEVAVAGGA 188
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 27.2 bits (61), Expect = 0.75
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 12 GTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAA 45
G + F I G AALWG AH G+N A
Sbjct: 253 GANPFACIAAGI-------AALWGPAHGGANEAV 279
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 27.2 bits (60), Expect = 0.80
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRA 31
+G + + + LG VG A
Sbjct: 181 EGNVITPDMYKRVMDLGVHCSVVGGA 206
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 27.2 bits (61), Expect = 0.90
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 12 GTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAA 45
G + AI G ALWG AH G+N A
Sbjct: 250 GNSPYAAIIAGI-------TALWGPAHGGANEAV 276
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol-
4-carboxamid ribonucleotid...; isomerase, histidine
biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1
PDB: 2cff_A 2w79_A
Length = 241
Score = 26.8 bits (60), Expect = 1.0
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 7 GGIRYGTDVFKAIGLGAKYVFVGRAAL 33
GGIR K LG + V L
Sbjct: 80 GGIRSLDYAEKLRKLGYRRQIVSSKVL 106
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis,
TIM-barrel, His biosynthesis, tryptophan biosynthesis;
HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A
2y85_A*
Length = 244
Score = 26.8 bits (60), Expect = 1.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 7 GGIRYGTDVFKAIGLGAKYVFVGRAAL 33
GGIR + A+ G V VG AAL
Sbjct: 81 GGIRDDESLAAALATGCARVNVGTAAL 107
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri
allostery, oxaloacetate, acetylcoa, NADH, allosteric
enzyme transferase; 1.90A {Escherichia coli} PDB:
3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A*
1owc_A 4e6y_A
Length = 426
Score = 26.5 bits (59), Expect = 1.5
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 12 GTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAA 45
G + F I G A+LWG AH G+N AA
Sbjct: 245 GANPFACIAAGI-------ASLWGPAHGGANEAA 271
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan
biosynthesis; 1.8A {Streptomyces coelicolor} SCOP:
c.1.2.1 PDB: 2vep_A 2x30_A
Length = 244
Score = 26.4 bits (59), Expect = 1.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 7 GGIRYGTDVFKAIGLGAKYVFVGRAAL 33
GGIR + A+ G V +G AAL
Sbjct: 82 GGIRDDDTLAAALATGCTRVNLGTAAL 108
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur
flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum
brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 26.3 bits (59), Expect = 2.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 6 DGGIRYGTDVFKAIGLGA 23
DGG++ G D+ A LGA
Sbjct: 1070 DGGLKTGRDIVIAAMLGA 1087
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 26.0 bits (58), Expect = 2.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 6 DGGIRYGTDVFKAIGLGA 23
DGG++ G DV A +GA
Sbjct: 1105 DGGLKTGWDVVMAALMGA 1122
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 25.6 bits (56), Expect = 2.7
Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRA 31
GGI T V LG V VG A
Sbjct: 165 AGGISSQT-VKDYALLGPDVVIVGSA 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 3.6
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 56 LPEAVADKVHNAYSIF---------FLELNNL--VPTLLLGS-IQPPSKRLAP 96
L AV + +IF F EL +L +L+G I+ ++ L+
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 24.8 bits (54), Expect = 5.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 7 GGIRYGTDVFKAIGLGAKYVFVGRAA 32
GG+ G D F+ I GA V +G A
Sbjct: 282 GGVXTGRDAFEHILCGASMVQIGTAL 307
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A
{Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Length = 385
Score = 24.4 bits (54), Expect = 8.0
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Query: 12 GTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAA 45
+D++ I AAL G H G+ AA
Sbjct: 204 LSDMYSGITAAL-------AALKGPLHGGAAEAA 230
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 24.5 bits (54), Expect = 8.5
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 7 GGIRYGTDVFKAIGLGAKYVFVGRAAL 33
GG+ DV + GA V VG A
Sbjct: 248 GGVANAQDVLEMYMAGASAVAVGTANF 274
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 24.5 bits (54), Expect = 8.7
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 33 LWGLAHSGSNGAARVLQSLVHKILPEAVADKV 64
L GL G AA+ LQ+L + E + +V
Sbjct: 35 LLGLVREGEGIAAKALQAL--GLGSEKIQKEV 64
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase;
2.00A {Sulfolobus tokodaii}
Length = 378
Score = 24.4 bits (54), Expect = 9.1
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 12 GTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAA 45
+D++ I AAL G H G+ A
Sbjct: 200 LSDMYSCIVAAL-------AALKGPLHGGAAEEA 226
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.413
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,531,699
Number of extensions: 82837
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 74
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)