RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7649
(100 letters)
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 73.5 bits (179), Expect = 1e-17
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
V +D G R G+D+ KA+ LGA+ V +GRA L+GLA G G VL L
Sbjct: 276 KPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLL 326
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 73.0 bits (178), Expect = 2e-17
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
+EV++DGG+R GTDV KA+ LGAK V +GR L+ + G NG + ++ L
Sbjct: 307 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEIL 357
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 72.6 bits (177), Expect = 3e-17
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
+EVY+DGG+R GTDV KA+ LGA+ +F+GR LWGLA G +G VL L
Sbjct: 273 IEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDIL 323
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 69.6 bits (169), Expect = 3e-16
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
+ V+LDGG+R GTDVFKA+ LGA VF+GR ++ LA G G +VLQ +
Sbjct: 280 IPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMM 330
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 54.8 bits (131), Expect = 6e-11
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+ GG++ DV KAI LGA + L L SG G +Q ++ ++
Sbjct: 232 STMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEEL 286
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 53.3 bits (127), Expect = 2e-10
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
+ + GG+ GTD KA+ LGA + V R L G+ A + + ++
Sbjct: 235 LPLVASGGVYTGTDGAKALALGADLLAVARPLLRPAL-EGAERVAAWIGDYLEEL 288
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 40.2 bits (93), Expect = 7e-06
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31
+ V +G I + K LG + VG A
Sbjct: 184 IAVIAEGKIHSPEEAKKINDLGVAGIVVGGA 214
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 39.2 bits (91), Expect = 3e-05
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRAALWGL 36
DGG++ G DV A +GA+ G A+
Sbjct: 675 DGGLKTGWDVVMAALMGAEEYGFGSIAMIAE 705
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 38.7 bits (89), Expect = 3e-05
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31
V +G + + + LG VG A
Sbjct: 178 VIAEGNVITPDMYKRVMDLGVHCSVVGGA 206
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 38.4 bits (89), Expect = 4e-05
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRAALWGL 36
DGG++ G D+ A LGA+ +G A+L +
Sbjct: 648 DGGLKTGRDIVIAAMLGAEEFGIGTASLIAM 678
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 30.7 bits (68), Expect = 0.016
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRAALWG 35
GG+ DV + GA V VG A
Sbjct: 247 MGGVANAQDVLEMYMAGASAVAVGTANFAD 276
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 29.6 bits (65), Expect = 0.046
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33
++V GI G DV KAI LG V +
Sbjct: 176 VKVLCGAGISTGEDVKKAIELGTVGVLLASGVT 208
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 28.4 bits (62), Expect = 0.11
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 7 GGIRYGTDVFKAIGLGAKYVFVGRAAL 33
GGI + + GA + V A
Sbjct: 262 GGIDSAESGLQFLHSGASVLQVCSAVQ 288
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
1314]}
Length = 365
Score = 27.3 bits (60), Expect = 0.33
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVG 29
DGGI+Y D+ KA+ G V +G
Sbjct: 216 DGGIKYSGDIVKALAAGGNAVMLG 239
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 27.3 bits (59), Expect = 0.36
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL 33
+++ GGI G D F+ + GA + +G A
Sbjct: 243 IQIIGTGGIETGQDAFEHLLCGATMLQIGTALH 275
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 248
Score = 27.1 bits (59), Expect = 0.37
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL 56
+V + G+ V + GA V VG A + + G L+ V ++L
Sbjct: 192 NKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEF-LKKKVEELL 246
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 26.9 bits (58), Expect = 0.43
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 10 RYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQS---LVHKILPEAVADKVHN 66
RY +D+F+A LG ++ + +G+ A + LP+ V +
Sbjct: 26 RYNSDLFQARLLGKNFICM----------TGAEAAKVFYDTDRFQRQNALPKRVQKSLFG 75
Query: 67 AYSIFFLE 74
+I ++
Sbjct: 76 VNAIQGMD 83
>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Bacillus subtilis [TaxId: 1423]}
Length = 237
Score = 26.8 bits (58), Expect = 0.48
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRA 31
+ +R T A G+ + VGR+
Sbjct: 192 NDQVRVAT-PAIAREKGSSAIVVGRS 216
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 26.7 bits (58), Expect = 0.49
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNG-AARVLQSLVHKI 55
V + GI V + GA V +G A + L + S R L+ +
Sbjct: 201 KPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGM 256
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 25.9 bits (56), Expect = 0.87
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31
+V + GG+ + G+ GR+
Sbjct: 162 FKVTVTGGLALED-LPLFKGIPIHVFIAGRS 191
>d1y6kr2 b.1.2.1 (R:101-206) Interleukin-10 receptor 1, IL-10R1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 25.2 bits (55), Expect = 1.0
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 71 FFLELNNLVPTLLLGSIQPPSKRLAP 96
LE++N +LG IQ P ++AP
Sbjct: 9 VNLEIHN---GFILGKIQLPRPKMAP 31
>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Escherichia coli [TaxId: 562]}
Length = 231
Score = 25.6 bits (55), Expect = 1.1
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRA 31
R T +A+ G Y+ +GR
Sbjct: 188 GDQRRIMT-PEQALSAGVDYMVIGRP 212
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 25.3 bits (55), Expect = 1.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31
V +D G+ +D A+ LG + V + A
Sbjct: 182 VLVDAGVGTASDAAIAMELGCEAVLMNTA 210
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 24.7 bits (54), Expect = 2.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31
+ GG+ D + LGA VFVG
Sbjct: 192 NFAAGGVTTPADAALMMHLGADGVFVGSG 220
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 24.4 bits (52), Expect = 2.8
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARV--LQSLVHKI 55
GI V A+ GA G A + + + ++ + L+S V +
Sbjct: 208 ALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNLASPKQMLAELRSFVSAM 262
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 24.4 bits (52), Expect = 3.2
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRA 31
G +Y T V + G+ + VGR
Sbjct: 212 ALGQQYRT-VDDVVSTGSDIIIVGRG 236
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 177
Score = 24.0 bits (52), Expect = 3.2
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 75 LNNLVPTLLLGSIQPPSKRLA 95
+N L P LL + PP L
Sbjct: 3 MNQLYPIDLLTELPPPITDLT 23
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 24.1 bits (51), Expect = 3.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRA 31
GG+ G + F I GA V VG A
Sbjct: 248 CGGVYSGEEAFLHILAGASMVQVGTA 273
>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Pyrococcus horikoshii [TaxId:
53953]}
Length = 206
Score = 23.7 bits (50), Expect = 4.7
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 6 DGGIRYGTDVFKAIGLGAKYVFVGRA 31
G + G A+ GA Y+ VGRA
Sbjct: 163 GIGAQGGK-AKDAVKAGADYIIVGRA 187
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 23.6 bits (51), Expect = 5.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31
V +D GI D A+ LGA V + A
Sbjct: 180 VIVDAGIGSPKDAAYAMELGADGVLLNTA 208
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Escherichia coli
[TaxId: 562]}
Length = 235
Score = 23.2 bits (49), Expect = 6.4
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 43 GAARVLQSLVHKILPEAVADKVHNAYSI 70
G +VL L +I+ A ++ ++
Sbjct: 204 GPGKVLTGLTKRIVDTLTASALNEPSAM 231
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 23.4 bits (49), Expect = 7.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 7 GGIRYGTDVFKAIGLGAKYVFVGRA 31
GG+ G D + I GA V + A
Sbjct: 305 GGVSSGQDALEKIRAGASLVQLYTA 329
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus
carota) [TaxId: 4039]}
Length = 319
Score = 23.0 bits (49), Expect = 8.6
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 40 GSNGAARVLQSLVHKILPEAVADK 63
G+ + RV I A
Sbjct: 272 GAATSGRVTWKGFKVITSSTEAQG 295
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.413
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 355,218
Number of extensions: 13812
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 38
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)