BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7654
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 78/303 (25%)
Query: 66 KLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKN 125
+L LNK V +I + GV V D S YSAD V+++ SLGV +SDLI F P LP K
Sbjct: 230 RLQLNKVVREIKYS-PGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVR 288
Query: 126 IIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLG 185
I + K+F++FP+K+WP+ +G FF
Sbjct: 289 AIYQFDMAVYTKIFLKFPRKFWPEG-KGREFF---------------------------- 319
Query: 186 TVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDP 245
+ RGY W +++ P D
Sbjct: 320 ------------LYASSRRGYYGVWQEFEKQYP-------------------------DA 342
Query: 246 LTFLGWISGASARFMETLSDEQIKTESMKAFR-FFLGANYTIPEPSRVFHSSWGTNKHFK 304
L ++ +R +E SDEQ K E M+ R F G + +P+ + + W +++ +K
Sbjct: 343 NVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKD--VPDATDILVPRWWSDRFYK 400
Query: 305 GSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREAD 364
G++S + + ++ + L AP+ + F GE ++EH G V+GA +G A+
Sbjct: 401 GTFSNWPVGVNRYEYDQ--LRAPVGR------VYFTGEHTSEHYNGYVHGAYLSGIDSAE 452
Query: 365 RIL 367
++
Sbjct: 453 ILI 455
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 78/303 (25%)
Query: 66 KLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKN 125
+L LNK V +I + GV V D S YSAD V+++ SLGV +SDLI F P LP K
Sbjct: 230 RLQLNKVVREIKYS-PGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVR 288
Query: 126 IIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLG 185
I + +F++FP+K+WP+ +G FF
Sbjct: 289 AIYQFDMAVYTMIFLKFPRKFWPEG-KGREFF---------------------------- 319
Query: 186 TVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDP 245
+ RGY W +++ P D
Sbjct: 320 ------------LYASSRRGYYGVWQEFEKQYP-------------------------DA 342
Query: 246 LTFLGWISGASARFMETLSDEQIKTESMKAFR-FFLGANYTIPEPSRVFHSSWGTNKHFK 304
L ++ +R +E SDEQ K E M+ R F G + +P+ + + W +++ +K
Sbjct: 343 NVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKD--VPDATDILVPRWWSDRFYK 400
Query: 305 GSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREAD 364
G++S + + ++ + L AP+ + F GE ++EH G V+GA +G A+
Sbjct: 401 GTFSNWPVGVNRYEYDQ--LRAPVGR------VYFTGEHTSEHYNGYVHGAYLSGIDSAE 452
Query: 365 RIL 367
++
Sbjct: 453 ILI 455
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 116/305 (38%), Gaps = 76/305 (24%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQK 123
G + L V I++ + V VT DG+ YSA KVL+TV L + + I F PPL +K
Sbjct: 543 GLDIQLKSPVQCIDY-SGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKK 601
Query: 124 KNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLF 183
I SL
Sbjct: 602 MKAIN----------------------------------------------------SLG 609
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFW--THDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
G ++K+ ++FP ++W V+G +FF K LF D P
Sbjct: 610 AGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLF--AVFYDMDP----------- 656
Query: 242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301
+ + I+G + + TL D+Q+ + M R +P+P++ F + W T+
Sbjct: 657 QKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQ-EVPDPTKYFVTRWSTDP 715
Query: 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
+ +YS K S + + QG + FAGEA+N H TV GA +G R
Sbjct: 716 WIQMAYSFV-----KTGGSGEAYDIIAEDIQG--TVFFAGEATNRHFPQTVTGAYLSGVR 768
Query: 362 EADRI 366
EA +I
Sbjct: 769 EASKI 773
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 116/305 (38%), Gaps = 76/305 (24%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQK 123
G + L V I++ + V VT DG+ YSA KVL+TV L + + I F PPL +K
Sbjct: 563 GLDIQLKSPVQCIDY-SGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKK 621
Query: 124 KNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLF 183
I SL
Sbjct: 622 MKAIN----------------------------------------------------SLG 629
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWT--HDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
G ++K+ ++FP ++W V+G +FF K LF D P
Sbjct: 630 AGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLF--AVFYDMDP----------- 676
Query: 242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301
+ + I+G + + TL D+Q+ + M R +P+P++ F + W T+
Sbjct: 677 QKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQ-EVPDPTKYFVTRWSTDP 735
Query: 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
+ +YS K S + + QG + FAGEA+N H TV GA +G R
Sbjct: 736 WIQMAYSFV-----KTGGSGEAYDIIAEDIQG--TVFFAGEATNRHFPQTVTGAYLSGVR 788
Query: 362 EADRI 366
EA +I
Sbjct: 789 EASKI 793
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 116/305 (38%), Gaps = 76/305 (24%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQK 123
G + L V I++ + V VT DG+ YSA KVL+TV L + + I F PPL +K
Sbjct: 551 GLDIQLKSPVQCIDY-SGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKK 609
Query: 124 KNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLF 183
I SL
Sbjct: 610 MKAIN----------------------------------------------------SLG 617
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFW--THDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
G ++K+ ++FP ++W V+G +FF K LF D P
Sbjct: 618 AGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLF--AVFYDMDP----------- 664
Query: 242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301
+ + I+G + + TL D+Q+ + M R +P+P++ F + W T+
Sbjct: 665 QKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQ-EVPDPTKYFVTRWSTDP 723
Query: 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
+ +YS K S + + QG + FAGEA+N H TV GA +G R
Sbjct: 724 WIQMAYSFV-----KTGGSGEAYDIIAEDIQG--TVFFAGEATNRHFPQTVTGAYLSGVR 776
Query: 362 EADRI 366
EA +I
Sbjct: 777 EASKI 781
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 120/315 (38%), Gaps = 43/315 (13%)
Query: 67 LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDL---------ITFVP 117
L L+ EV I E + V V C DG+ Y+AD V+ITV V + I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
PL P ++ + + G + KV F + W ++ ++ + ++ +D
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLD-- 334
Query: 178 PWISLFLGTVDKVFVRF-PQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVD-----GAPW 231
+D + R QK F+ + L K T V AP
Sbjct: 335 --------ELDSMLEREDSQKHTSVTCWSQPLFFVN------LSKSTGVASFMMLMQAPL 380
Query: 232 IVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSR 291
+ ED + + M+ L E + + M+ AN P
Sbjct: 381 TNHIESI---REDKERLFSFFQPVLNKIMKCLDSEDV-IDGMRPIENIANANK--PVLRN 434
Query: 292 VFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGT 351
+ S+W + + +G+YS D + D+ +SNGQ ++ FAGE + G
Sbjct: 435 IIVSNWTRDPYSRGAYSACFPGDDPV-----DMVVAMSNGQDSRI-RFAGEHTIMDGAGC 488
Query: 352 VNGAVETGWREADRI 366
GA E+G REA RI
Sbjct: 489 AYGAWESGRREATRI 503
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 120/315 (38%), Gaps = 43/315 (13%)
Query: 67 LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDL---------ITFVP 117
L L+ EV I E + V V C DG+ Y+AD V+ITV V + I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
PL P ++ + + G + KV F + W ++ ++ + ++ +D
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLD-- 334
Query: 178 PWISLFLGTVDKVFVRF-PQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVD-----GAPW 231
+D + R QK F+ + L K T V AP
Sbjct: 335 --------ELDSMLEREDSQKHTSVTCWSQPLFFVN------LSKSTGVASFMMLMQAPL 380
Query: 232 IVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSR 291
+ ED + + M+ L E + + M+ AN P
Sbjct: 381 TNHIESI---REDKERLFSFFQPVLNKIMKCLDSEDV-IDGMRPIENIANANK--PVLRN 434
Query: 292 VFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGT 351
+ S+W + + +G+YS D + D+ +SNGQ ++ FAGE + G
Sbjct: 435 IIVSNWTRDPYSRGAYSACFPGDDPV-----DMVVAMSNGQDSRI-RFAGEHTIMDGAGC 488
Query: 352 VNGAVETGWREADRI 366
GA E+G REA RI
Sbjct: 489 AYGAWESGRREATRI 503
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 120/315 (38%), Gaps = 43/315 (13%)
Query: 67 LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDL---------ITFVP 117
L L+ EV I E + V V C DG+ Y+AD V+ITV V + I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
PL P ++ + + G + KV F + W ++ ++ + ++ +D
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLD-- 334
Query: 178 PWISLFLGTVDKVFVRF-PQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVD-----GAPW 231
+D + R QK F+ + L K T V AP
Sbjct: 335 --------ELDSMLEREDSQKHTSVTCWSQPLFFVN------LSKSTGVASFMMLMQAPL 380
Query: 232 IVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSR 291
+ ED + + M+ L E + + M+ AN P
Sbjct: 381 TNHIESI---REDKERLFSFFQPVLNKIMKCLDSEDV-IDGMRPIENIANANK--PVLRN 434
Query: 292 VFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGT 351
+ S+W + + +G+YS D + D+ +SNGQ ++ FAGE + G
Sbjct: 435 IIVSNWTRDPYSRGAYSACFPGDDPV-----DMVVAMSNGQDSRI-RFAGEHTIMDGAGC 488
Query: 352 VNGAVETGWREADRI 366
GA E+G REA RI
Sbjct: 489 AYGAWESGRREATRI 503
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 120/315 (38%), Gaps = 43/315 (13%)
Query: 67 LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDL---------ITFVP 117
L L+ EV I E + V V C DG+ Y+AD V+ITV V + I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
PL P ++ + + G + KV F + W ++ ++ + ++ +D
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLD-- 334
Query: 178 PWISLFLGTVDKVFVRF-PQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVD-----GAPW 231
+D + R QK F+ + L K T V AP
Sbjct: 335 --------ELDSMLEREDSQKHTSVTCWSQPLFFVN------LSKSTGVASFMMLMQAPL 380
Query: 232 IVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSR 291
+ ED + + M+ L E + + M+ AN P
Sbjct: 381 TNHIESI---REDKERLFSFFQPVLNKIMKCLDSEDV-IDGMRPIENIANANK--PVLRN 434
Query: 292 VFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGT 351
+ S+W + + +G+YS D + D+ +SNGQ ++ FAGE + G
Sbjct: 435 IIVSNWTRDPYSRGAYSACFPGDDPV-----DMVVAMSNGQDSRI-RFAGEHTIMDGAGC 488
Query: 352 VNGAVETGWREADRI 366
GA E+G REA RI
Sbjct: 489 AYGAWESGRREATRI 503
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59 TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
P+ L G + LN V ++ + A+G + V SQ Y D VL T+ LGV K
Sbjct: 456 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 514
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
+ FVPPLP +W ++ F
Sbjct: 515 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 538
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
G ++KV + F + +W V + + + LF
Sbjct: 539 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 575
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
F+ + P+ L ++G +A ME +SD+ I + + G++ +P+
Sbjct: 576 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 624
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
P S W + +GSYS + + + +DL A P++ G Q L FA
Sbjct: 625 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 681
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
GE + + TV+GA+ +G REA RI
Sbjct: 682 GEHTIRNYPATVHGALLSGLREAGRI 707
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59 TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
P+ L G + LN V ++ + A+G + V SQ Y D VL T+ LGV K
Sbjct: 404 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 462
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
+ FVPPLP +W ++ F
Sbjct: 463 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 486
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
G ++KV + F + +W V + + + LF
Sbjct: 487 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 523
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
F+ + P+ L ++G +A ME +SD+ I + + G++ +P+
Sbjct: 524 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 572
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
P S W + +GSYS + + + +DL A P++ G Q L FA
Sbjct: 573 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 629
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
GE + + TV+GA+ +G REA RI
Sbjct: 630 GEHTIRNYPATVHGALLSGLREAGRI 655
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59 TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
P+ L G + LN V ++ + A+G + V SQ Y D VL T+ LGV K
Sbjct: 403 VPVALAEGLDIKLNTAVRQVQY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 461
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
+ FVPPLP +W ++ F
Sbjct: 462 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 485
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
G ++KV + F + +W V + + + LF
Sbjct: 486 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 522
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
F+ + P+ L ++G +A ME +SD+ I + + G++ +P+
Sbjct: 523 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 571
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
P S W + +GSYS + + + +DL A P++ G Q L FA
Sbjct: 572 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 628
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
GE + + TV+GA+ +G REA RI
Sbjct: 629 GEHTIRNYPATVHGALLSGLREAGRI 654
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59 TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
P+ L G + LN V ++ + A+G + V SQ Y D VL T+ LGV K
Sbjct: 403 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 461
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
+ FVPPLP +W ++ F
Sbjct: 462 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 485
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
G ++KV + F + +W V + + + LF
Sbjct: 486 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 522
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
F+ + P+ L ++G +A ME +SD+ I + + G++ +P+
Sbjct: 523 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 571
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
P S W + +GSYS + + + +DL A P++ G Q L FA
Sbjct: 572 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 628
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
GE + + TV+GA+ +G REA RI
Sbjct: 629 GEHTIRNYPATVHGALLSGLREAGRI 654
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59 TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
P+ L G + LN V ++ + A+G + V SQ Y D VL T+ LGV K
Sbjct: 403 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 461
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
+ FVPPLP +W ++ F
Sbjct: 462 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 485
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
G ++KV + F + +W V + + + LF
Sbjct: 486 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 522
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
F+ + P+ L ++G +A ME +SD+ I + + G++ +P+
Sbjct: 523 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 571
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
P S W + +GSYS + + + +DL A P++ G Q L FA
Sbjct: 572 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 628
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
GE + + TV+GA+ +G REA RI
Sbjct: 629 GEHTIRNYPATVHGALLSGLREAGRI 654
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59 TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
P+ L G + LN V ++ + A+G + V SQ Y D VL T+ LGV K
Sbjct: 403 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 461
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
+ FVPPLP +W ++ F
Sbjct: 462 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 485
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
G ++KV + F + +W V + + + LF
Sbjct: 486 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 522
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
F+ + P+ L ++G +A ME +SD+ I + + G++ +P+
Sbjct: 523 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 571
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
P S W + +GSYS + + + +DL A P++ G Q L FA
Sbjct: 572 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 628
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
GE + + TV+GA+ +G REA RI
Sbjct: 629 GEHTIRNYPATVHGALLSGLREAGRI 654
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59 TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
P+ L G + LN V ++ + A+G + V SQ Y D VL T+ LGV K
Sbjct: 452 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 510
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
+ FVPPLP +W ++ F
Sbjct: 511 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 534
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
G ++KV + F + +W V + + + LF
Sbjct: 535 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 571
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
F+ + P+ L ++G +A ME +SD+ I + + G++ +P+
Sbjct: 572 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 620
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
P S W + +GSYS + + + +DL A P++ G Q L FA
Sbjct: 621 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 677
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
GE + + TV+GA+ +G REA RI
Sbjct: 678 GEHTIRNYPATVHGALLSGLREAGRI 703
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59 TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
P+ L G + LN V ++ + A+G + V SQ Y D VL T+ LGV K
Sbjct: 574 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 632
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
+ FVPPLP +W ++ F
Sbjct: 633 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 656
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
G ++KV + F + +W V + + + LF
Sbjct: 657 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 693
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
F+ + P+ L ++G +A ME +SD+ I + + G++ +P+
Sbjct: 694 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 742
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
P S W + +GSYS + + + +DL A P++ G Q L FA
Sbjct: 743 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 799
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
GE + + TV+GA+ +G REA RI
Sbjct: 800 GEHTIRNYPATVHGALLSGLREAGRI 825
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 67 LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDL---------ITFVP 117
L L+ EV I E + V V C DG+ Y+AD V+ITV V + I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
PL P ++ + + G + KV F + W ++
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSNE 309
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 282 ANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAG 341
AN P + S+W + + +G+YS D + D SNGQ ++ FAG
Sbjct: 425 ANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPV-----DXVVAXSNGQDSRIR-FAG 478
Query: 342 EASNEHQYGTVNGAVETGWREADRI 366
E + G GA E+G REA RI
Sbjct: 479 EHTIXDGAGCAYGAWESGRREATRI 503
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 52 LKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA----DGSQYSADKVLITVSLGV 107
+ Q+P + +K+ N V KI ++AN V VT D S +AD V++ +
Sbjct: 240 MDQLPTSMYRAIEEKVKFNARVIKIQ-QNANQVTVTYQTPEKDTSSNTADYVIVCTTSRA 298
Query: 108 FKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
+ I F PPLPP+K++ + S+ + K+F+ K+W DD
Sbjct: 299 ARR--IQFEPPLPPKKQHALRSVHYRSGTKIFLTCSSKFWEDD 339
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 52 LKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQ----YSADKVLITVSLGV 107
+ ++P + +K+ LN V KI +D V VT + +AD V++ +
Sbjct: 253 MDKLPTSMYQAIQEKVHLNARVIKIQ-QDVKEVTVTYQTSEKETLSVTADYVIVCTTSRA 311
Query: 108 FKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
+ I F PPLPP+K + + S+ + K+F+ +K+W DD
Sbjct: 312 ARR--IKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDD 352
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 52 LKQMPGQTPIDLGKKLLLNKEVTKI--NWEDANGVLVTCA-DGSQYSADKVLITVSLGVF 108
+ ++P + +K+ LN +V KI N E V T A + + +AD V++ +
Sbjct: 240 MDKLPTSMYRAIEEKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTTSRAT 299
Query: 109 KSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
+ I F PPLPP+K + + S+ + K+F+ +K+W D+
Sbjct: 300 RR--IKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDE 339
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 52 LKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLV---TCADGSQYSADKVLITVSLGVF 108
+ ++P D+ K+ N +V KI D +V + +AD V++ +
Sbjct: 240 MDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAV 299
Query: 109 KSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
+ LI F PPL P+K + + S+ + K+F+ K+W DD
Sbjct: 300 R--LIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDD 339
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 30 THEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA 89
+H ED + K G + ++ L Q +LG ++LN V I W D NGV V +
Sbjct: 199 SHLTDEDFILDKRVIGGMQQVSLLQAA-----ELGDDVVLNSPVRTIKW-DENGVSV-VS 251
Query: 90 DGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPD 149
+ + +A V++ V ++ ++F PPLP ++ + + LG V KV + +W +
Sbjct: 252 ERATVNARFVIMAVPPNLYSR--VSFDPPLPRRQHQMHQHQSLGLVIKVHAVYDTPFWRE 309
Query: 150 D 150
+
Sbjct: 310 E 310
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 247 TFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGS 306
T +G++S A + LS E K +++ FLG PE + S WG+ + +G+
Sbjct: 338 TLVGFVSDEKADAVFELSAEDRKKAILESIAGFLGDKALTPEV--YYESDWGSEEWTRGA 395
Query: 307 YSIYTLTTDKMNASRHDLEAPLSNGQGKQV----LLFAGEASNEHQYGTVNGAVETGWRE 362
Y AS +DL G+ + + ++ Y V+GAV G
Sbjct: 396 Y-----------ASSYDLGGLHRYGKDQHANVGPIYWSSSDLAAEGYQHVDGAVRMGQAT 444
Query: 363 ADRILKSD 370
A RI++++
Sbjct: 445 AARIVEAN 452
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 52 LKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS-QYSADKVLITVSLGVFKS 110
++Q+ + LG + LN V + W ++ ++ ADG + A +V++ V ++
Sbjct: 214 MQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVL--ADGDIRVEASRVILAVPPNLYSR 271
Query: 111 DLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
I++ PPLP ++ + + LG V KV + +W +D
Sbjct: 272 --ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRED 309
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 15/164 (9%)
Query: 209 FWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQI 268
FW D F + VV ++Y +D T + ++S A M LS E+
Sbjct: 305 FWREDGLSGTGFGASEVVQ------EVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEER 358
Query: 269 KTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPL 328
K + + +LG EP + S WG+ + +G Y+ + ++ D P+
Sbjct: 359 KATILASLARYLGPK--AEEPVVYYESDWGSEEWTRGCYAA-SFDLGGLHRYGADSRTPV 415
Query: 329 SNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372
+ F+ Y V+GAV G R A I+ A
Sbjct: 416 GP------IHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARSKA 453
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 52 LKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS-QYSADKVLITVSLGVFKS 110
++Q+ + LG + LN V + W ++ ++ ADG + A +V++ V ++
Sbjct: 214 MQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVL--ADGDIRVEASRVILAVPPNLYSR 271
Query: 111 DLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
I++ PPLP ++ + + LG V KV + +W +D
Sbjct: 272 --ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRED 309
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 15/164 (9%)
Query: 209 FWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQI 268
FW D F + VV ++Y +D T + ++S A M LS E+
Sbjct: 305 FWREDGLSGTGFGASEVVQ------EVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEER 358
Query: 269 KTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPL 328
K + + +LG EP + S WG+ + +G YT + D R+ ++
Sbjct: 359 KATILASLARYLGPK--AEEPVVYYESDWGSEEWTRG---CYTASFDLGGLHRYGADSRT 413
Query: 329 SNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372
G + F+ YG V+GAV G R A I+ A
Sbjct: 414 PVGP----IHFSCSDIAAEGYGHVDGAVRMGQRTAADIIARSKA 453
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 52 LKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS-QYSADKVLITVSLGVFKS 110
++Q+ + LG + LN V + W ++ ++ ADG + A +V++ V ++
Sbjct: 214 MQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVL--ADGDIRVEASRVILAVPPNLYSR 271
Query: 111 DLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
I++ PPLP ++ + + LG V KV + +W +D
Sbjct: 272 --ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRED 309
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 15/164 (9%)
Query: 209 FWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQI 268
FW D F + VV ++Y +D T + ++S A M LS E+
Sbjct: 305 FWREDGLSGTGFGASEVVQ------EVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEER 358
Query: 269 KTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPL 328
K + + +LG EP + S WG+ + +G Y+ + ++ D P+
Sbjct: 359 KATILASLARYLGPK--AEEPVVYYESDWGSEEWTRGCYAA-SFDLGGLHRYGADSRTPV 415
Query: 329 SNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372
+ F+ Y V+GAV G R A I+ A
Sbjct: 416 GP------IHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARSKA 453
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQ 122
LG K+ L+ VT I+ D N ++V + Y V+ + + I F P LPP+
Sbjct: 242 LGDKVKLSSPVTYIDQTDDN-IIVETLNHEHYECKYVISAIP--PILTAKIHFKPELPPE 298
Query: 123 KKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPL 167
+ +I+ L +G V K V + + +W + Y +D++ P+
Sbjct: 299 RNQLIQRLPMGAVIKCMVYYKEAFWKK--KDYCGCMIIEDEEAPI 341
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 52 LKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS-QYSADKVLITVSLGVFKS 110
++Q+ + LG + LN V + W ++ ++ ADG + A +V++ V ++
Sbjct: 214 MQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVL--ADGDIRVEASRVILAVPPNLYSR 271
Query: 111 DLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
I++ PPLP ++ + + LG V KV + +W +D
Sbjct: 272 --ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRED 309
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 15/164 (9%)
Query: 209 FWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQI 268
FW D F + VV ++Y +D T + ++S A M LS E+
Sbjct: 305 FWREDGLSGTGFGASEVVQ------EVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEER 358
Query: 269 KTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPL 328
K + + +LG EP + S WG+ + +G+Y+ + ++ D P+
Sbjct: 359 KATILASLARYLGPK--AEEPVVYYESDWGSEEWTRGAYAA-SFDLGGLHRYGADSRTPV 415
Query: 329 SNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372
+ F+ Y V+GAV G R A I+ A
Sbjct: 416 GP------IHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARSKA 453
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 31/190 (16%)
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
LG+V K V + + FW D + T ++DG V + L
Sbjct: 291 LGSVIKCIVYYKEP-----------FWRKKD-----YCGTMIIDGEEAPV---AYTLDDT 331
Query: 244 DP----LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGT 299
P +G+I AR + L+ E+ + + + LG+ + EP +W
Sbjct: 332 KPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCE 390
Query: 300 NKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETG 359
++ G Y+ Y + L P+ + FAG + H G + GAVE G
Sbjct: 391 EQYSGGCYTTY-FPPGILTQYGRVLRQPVDR------IYFAGTETATHWSGLMEGAVEAG 443
Query: 360 WREADRILKS 369
R A IL +
Sbjct: 444 ERAAREILHA 453
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV--SLGVFKSDLITFVPPLP 120
LG ++ L + V I+ N VLV + Y A V+ + +LG+ I F PPLP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGMK----IHFNPPLP 279
Query: 121 PQKKNIIESLFLGTVDKVFVRFPQKWW 147
+ +I + LG+V K V + + +W
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFW 306
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV--SLGVFKSDLITFVPPLP 120
LG ++ L + V I+ N VLV + Y A V+ + +LG+ I F PPLP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLP 279
Query: 121 PQKKNIIESLFLGTVDKVFVRFPQKWW 147
+ +I + LG+V K V + + +W
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFW 306
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 31/190 (16%)
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
LG+V K V + + FW D + T ++DG V + L
Sbjct: 291 LGSVIKCIVYYKEP-----------FWRKKD-----YCGTMIIDGEEAPV---AYTLDDT 331
Query: 244 DP----LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGT 299
P +G+I AR + L+ E+ + + + LG+ + EP +W
Sbjct: 332 KPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCE 390
Query: 300 NKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETG 359
++ G Y+ Y + L P+ + FAG + H G + GAVE G
Sbjct: 391 EQYSGGCYTTY-FPPGILTQYGRVLRQPVDR------IYFAGTETATHWSGYMEGAVEAG 443
Query: 360 WREADRILKS 369
R A IL +
Sbjct: 444 ERAAREILHA 453
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV--SLGVFKSDLITFVPPLP 120
LG ++ L + V I+ N VLV + Y A V+ + +LG+ I F PPLP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLP 279
Query: 121 PQKKNIIESLFLGTVDKVFVRFPQKWW 147
+ +I + LG+V K V + + +W
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFW 306
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 31/190 (16%)
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
LG+V K V + + FW D + T ++DG V + L
Sbjct: 291 LGSVIKCIVYYKEP-----------FWRKKD-----YCGTMIIDGEEAPV---AYTLDDT 331
Query: 244 DP----LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGT 299
P +G+I AR + L+ E+ + + + LG+ + EP +W
Sbjct: 332 KPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCE 390
Query: 300 NKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETG 359
++ G Y+ Y + L P+ + FAG + H G + GAVE G
Sbjct: 391 EQYSGGCYTTY-FPPGILTQYGRVLRQPVDR------IYFAGTETATHWSGFMEGAVEAG 443
Query: 360 WREADRILKS 369
R A IL +
Sbjct: 444 ERAAREILHA 453
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV--SLGVFKSDLITFVPPLP 120
LG ++ L + V I+ N VLV + Y A V+ + +LG+ I F PPLP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLP 279
Query: 121 PQKKNIIESLFLGTVDKVFVRFPQKWW 147
+ +I + LG+V K V + + +W
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFW 306
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 31/190 (16%)
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
LG+V K V + + FW D + T ++DG V + L
Sbjct: 291 LGSVIKCIVYYKEP-----------FWRKKD-----YCGTMIIDGEEAPV---AYTLDDT 331
Query: 244 DP----LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGT 299
P +G+I AR + L+ E+ + + + LG+ + EP +W
Sbjct: 332 KPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCE 390
Query: 300 NKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETG 359
++ G Y+ Y + L P+ + FAG + H G + GAVE G
Sbjct: 391 EQYSGGCYTTY-FPPGILTQYGRVLRQPVDR------IYFAGTETATHWSGYMEGAVEAG 443
Query: 360 WREADRILKS 369
R A IL +
Sbjct: 444 ERAAREILHA 453
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV--SLGVFKSDLITFVPPLP 120
LG ++ L + V I+ N VLV + Y A V+ + +LG+ I F PPLP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLP 279
Query: 121 PQKKNIIESLFLGTVDKVFVRFPQKWW 147
+ +I + LG+V K V + + +W
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFW 306
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 31/190 (16%)
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
LG+V K V + + FW D + T ++DG V + L
Sbjct: 291 LGSVIKCIVYYKEP-----------FWRKKD-----YCGTMIIDGEEAPV---AYTLDDT 331
Query: 244 DP----LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGT 299
P +G+I AR + L+ E+ + + + LG+ + EP +W
Sbjct: 332 KPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCE 390
Query: 300 NKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETG 359
++ G Y+ Y + L P+ + FAG + H G + GAVE G
Sbjct: 391 EQYSGGCYTTY-FPPGILTQYGRVLRQPVDR------IYFAGTETATHWSGHMEGAVEAG 443
Query: 360 WREADRILKS 369
R A IL +
Sbjct: 444 ERAAREILHA 453
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV--SLGVFKSDLITFVPPLP 120
LG ++ L + V I+ N VLV + Y A V+ + +LG+ I F PPLP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLP 279
Query: 121 PQKKNIIESLFLGTVDKVFVRFPQKWW 147
+ +I + LG+V K V + + +W
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFW 306
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 31/190 (16%)
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
LG+V K V + + FW D + T ++DG V + L
Sbjct: 291 LGSVIKCIVYYKEP-----------FWRKKD-----YCGTMIIDGEEAPV---AYTLDDT 331
Query: 244 DP----LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGT 299
P +G+I AR + L+ E+ + + + LG+ + EP +W
Sbjct: 332 KPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCE 390
Query: 300 NKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETG 359
++ G Y+ Y + L P+ + FAG + H G + GAVE G
Sbjct: 391 EQYSGGCYTTY-FPPGILTQYGRVLRQPVDR------IYFAGTETATHWSGYMEGAVEAG 443
Query: 360 WREADRILKS 369
R A IL +
Sbjct: 444 ERAAREILHA 453
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV--SLGVFKSDLITFVPPLP 120
LG ++ L + V I+ N VLV + Y A V+ + +LG+ I F PPLP
Sbjct: 224 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLP 278
Query: 121 PQKKNIIESLFLGTVDKVFVRFPQKWW 147
+ +I + LG+V K V + + +W
Sbjct: 279 MMRNQMITRVPLGSVIKCIVYYKEPFW 305
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 248 FLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSY 307
+G+I AR + L+ E+ + + + LG+ + EP +W ++ G Y
Sbjct: 339 IMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCEEQYSGGCY 397
Query: 308 SIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRIL 367
+ Y + L P+ + FAG + H G + GAVE G R A IL
Sbjct: 398 TTY-FPPGILTQYGRVLRQPVDR------IYFAGTETATHWSGYMEGAVEAGERAAREIL 450
Query: 368 KS 369
+
Sbjct: 451 HA 452
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV--SLGVFKSDLITFVPPLP 120
LG ++ L + V I+ N VLV + Y A V+ + +LG+ I F PPLP
Sbjct: 224 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLP 278
Query: 121 PQKKNIIESLFLGTVDKVFVRFPQKWW 147
+ +I + LG+V K V + + +W
Sbjct: 279 MMRNQMITRVPLGSVIKCIVYYKEPFW 305
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 31/190 (16%)
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
LG+V K V + + FW D + T ++DG V + L
Sbjct: 290 LGSVIKCIVYYKEP-----------FWRKKD-----YCGTMIIDGEEAPV---AYTLDDT 330
Query: 244 DP----LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGT 299
P +G+I AR + L+ E+ + + + LG+ + EP +W
Sbjct: 331 KPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCE 389
Query: 300 NKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETG 359
++ G Y+ Y + L P+ + FAG + H G + GAVE G
Sbjct: 390 EQYSGGCYTTY-FPPGILTQYGRVLRQPVDR------IYFAGTETATHWSGYMEGAVEAG 442
Query: 360 WREADRILKS 369
R A IL +
Sbjct: 443 ERAAREILHA 452
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV--SLGVFKSDLITFVPPLP 120
LG ++ L + V I+ N VLV + Y A V+ + +LG+ I F PPLP
Sbjct: 225 LGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLP 279
Query: 121 PQKKNIIESLFLGTVDKVFVRFPQKWW 147
+ +I + LG+V K V + + +W
Sbjct: 280 MMRNQMITRVPLGSVIKCIVYYKEPFW 306
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 31/190 (16%)
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
LG+V K V + + FW D + T ++DG V + L
Sbjct: 291 LGSVIKCIVYYKEP-----------FWRKKD-----YCGTMIIDGEEAPV---AYTLDDT 331
Query: 244 DP----LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGT 299
P +G+I AR + L+ E+ + + + LG+ + EP +W
Sbjct: 332 KPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEAL-EPVHYEEKNWCE 390
Query: 300 NKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETG 359
++ G Y+ Y + L P+ + FAG + H G + GAVE G
Sbjct: 391 EQYSGGCYTTY-FPPGILTQYGRVLRQPVDR------IYFAGTETATHWSGWMEGAVEAG 443
Query: 360 WREADRILKS 369
R A IL +
Sbjct: 444 ERAAREILHA 453
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 66 KLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKN 125
++ L VT I+ + + V VT DG + A V++ + ++ I F P LP ++++
Sbjct: 219 EIRLQTVVTGID-QSGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRS 275
Query: 126 IIESLFLGTVDKVFVR 141
+IE G K+ +
Sbjct: 276 VIEEGHGGQGLKILIH 291
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 66 KLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKN 125
++ L VT I+ + + V VT DG + A V++ + ++ I F P LP ++++
Sbjct: 219 EIRLQTVVTGID-QSGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRS 275
Query: 126 IIESLFLGTVDKVFV 140
+IE G K+ +
Sbjct: 276 VIEEGHGGQGLKILI 290
>pdb|3N09|A Chain A, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|B Chain B, Atomic Model Of An Infectious Rotavirus Particle
Length = 800
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 247 TFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGS 306
T + I+ + + ++TL+ E+++ S+ + +G IP P +FH + N +F +
Sbjct: 476 TLMACIT-MNMQHVQTLTTEKLQLTSVTSLCMLIGNATVIPSPQTLFH-YYNVNVNFHSN 533
Query: 307 YS 308
Y+
Sbjct: 534 YN 535
>pdb|3GZU|A Chain A, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|B Chain B, Vp7 Recoated Rotavirus Dlp
Length = 800
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 247 TFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGS 306
T + ++ + + ++TL+ E+++ S+ + +G IP P +FH + N +F +
Sbjct: 476 TLMACVT-MNMQHVQTLTTEKLQLTSVTSLCMLIGNATVIPSPQTLFH-YYNVNVNFHSN 533
Query: 307 YS 308
Y+
Sbjct: 534 YN 535
>pdb|3KZ4|A Chain A, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|B Chain B, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|4F5X|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 880
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 247 TFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGS 306
T + ++ + + ++TL+ E+++ S+ + +G IP P +FH + N +F +
Sbjct: 556 TLMACVT-MNMQHVQTLTTEKLQLTSVTSLCMLIGNATVIPSPQTLFH-YYNVNVNFHSN 613
Query: 307 YS 308
Y+
Sbjct: 614 YN 615
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,361,602
Number of Sequences: 62578
Number of extensions: 554269
Number of successful extensions: 1313
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1214
Number of HSP's gapped (non-prelim): 85
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)