Query psy7654
Match_columns 373
No_of_seqs 137 out of 1427
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:59:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0685|consensus 100.0 1.3E-42 2.8E-47 339.4 18.7 306 2-369 180-490 (498)
2 PLN02676 polyamine oxidase 100.0 3.9E-39 8.5E-44 329.1 28.0 284 12-372 188-475 (487)
3 PLN02568 polyamine oxidase 100.0 6.5E-39 1.4E-43 330.3 28.2 296 6-371 205-536 (539)
4 PLN02976 amine oxidase 100.0 2.8E-39 6E-44 349.5 26.4 272 14-371 904-1187(1713)
5 PLN03000 amine oxidase 100.0 5.8E-39 1.3E-43 339.3 27.2 273 14-372 350-625 (881)
6 PLN02529 lysine-specific histo 100.0 2.9E-37 6.3E-42 325.0 26.8 270 14-370 326-598 (738)
7 PLN02268 probable polyamine ox 100.0 6.4E-37 1.4E-41 308.7 26.6 264 13-370 171-434 (435)
8 PLN02328 lysine-specific histo 100.0 7E-37 1.5E-41 323.5 26.1 273 13-371 405-680 (808)
9 COG1231 Monoamine oxidase [Ami 100.0 1.1E-33 2.3E-38 277.1 20.4 241 41-372 205-449 (450)
10 KOG0029|consensus 100.0 1.1E-30 2.3E-35 265.8 20.6 284 2-371 177-460 (501)
11 PF01593 Amino_oxidase: Flavin 100.0 4.7E-28 1E-32 239.2 19.2 241 41-367 208-450 (450)
12 TIGR03467 HpnE squalene-associ 99.9 3E-24 6.4E-29 214.0 22.9 263 4-368 150-419 (419)
13 TIGR00562 proto_IX_ox protopor 99.9 4.2E-24 9.1E-29 216.8 22.6 241 40-370 220-460 (462)
14 PRK12416 protoporphyrinogen ox 99.9 7.1E-24 1.5E-28 215.5 22.8 274 5-370 165-461 (463)
15 PLN02576 protoporphyrinogen ox 99.9 1.3E-23 2.9E-28 215.2 22.1 244 40-370 234-487 (496)
16 TIGR02731 phytoene_desat phyto 99.9 1.3E-22 2.9E-27 205.7 21.4 267 12-367 175-453 (453)
17 PLN02612 phytoene desaturase 99.9 7.4E-22 1.6E-26 205.5 22.8 272 11-371 269-549 (567)
18 PRK11883 protoporphyrinogen ox 99.9 2.4E-21 5.2E-26 195.6 23.8 269 5-368 160-450 (451)
19 PRK07233 hypothetical protein; 99.9 4.2E-21 9E-26 192.6 21.2 275 4-372 150-433 (434)
20 COG1232 HemY Protoporphyrinoge 99.8 1.5E-17 3.2E-22 166.6 19.6 271 4-368 153-444 (444)
21 PLN02487 zeta-carotene desatur 99.8 2.6E-17 5.6E-22 170.7 21.4 290 4-370 249-553 (569)
22 PRK07208 hypothetical protein; 99.8 2E-17 4.4E-22 168.9 20.3 268 9-369 156-460 (479)
23 TIGR02732 zeta_caro_desat caro 99.8 4.3E-17 9.2E-22 166.6 20.0 286 5-367 174-474 (474)
24 COG3380 Predicted NAD/FAD-depe 99.7 2.7E-17 5.9E-22 151.5 11.0 226 41-370 104-331 (331)
25 TIGR02733 desat_CrtD C-3',4' d 99.5 1E-11 2.2E-16 127.5 23.3 131 4-145 190-331 (492)
26 KOG1276|consensus 99.4 3.8E-12 8.3E-17 124.2 14.7 241 41-367 245-490 (491)
27 TIGR02730 carot_isom carotene 99.3 5.8E-10 1.2E-14 114.7 23.8 131 5-145 189-324 (493)
28 TIGR02734 crtI_fam phytoene de 99.2 2.9E-10 6.4E-15 117.0 18.2 125 8-143 184-312 (502)
29 COG1233 Phytoene dehydrogenase 98.1 5E-05 1.1E-09 78.2 13.1 86 15-107 195-281 (487)
30 COG3349 Uncharacterized conser 98.0 1.4E-05 3E-10 81.0 7.8 94 260-370 370-463 (485)
31 KOG4254|consensus 97.7 0.0012 2.6E-08 66.0 14.3 83 39-131 258-342 (561)
32 COG2907 Predicted NAD/FAD-bind 97.7 0.00028 6E-09 68.3 9.6 118 13-143 179-305 (447)
33 PTZ00363 rab-GDP dissociation 97.4 0.00044 9.6E-09 70.3 8.3 62 37-104 224-287 (443)
34 PF07156 Prenylcys_lyase: Pren 97.3 0.0016 3.4E-08 64.7 10.2 90 5-107 90-187 (368)
35 COG2081 Predicted flavoprotein 97.3 0.00076 1.6E-08 66.6 7.6 67 32-104 97-164 (408)
36 PRK07494 2-octaprenyl-6-methox 96.4 0.25 5.4E-06 48.9 18.1 57 45-107 111-167 (388)
37 TIGR01988 Ubi-OHases Ubiquinon 96.2 0.51 1.1E-05 46.3 18.8 58 44-107 105-163 (385)
38 PRK08773 2-octaprenyl-3-methyl 96.1 0.54 1.2E-05 46.7 18.5 57 45-107 113-169 (392)
39 PF01266 DAO: FAD dependent ox 96.1 0.0072 1.6E-07 58.2 4.8 63 39-108 138-204 (358)
40 PF13738 Pyr_redox_3: Pyridine 95.8 0.025 5.4E-07 50.5 6.6 53 44-105 84-136 (203)
41 TIGR03197 MnmC_Cterm tRNA U-34 95.7 0.038 8.2E-07 54.8 8.1 57 45-108 135-191 (381)
42 PF03486 HI0933_like: HI0933-l 95.5 0.018 3.8E-07 58.1 4.9 64 37-106 100-165 (409)
43 PRK10015 oxidoreductase; Provi 95.2 2.5 5.4E-05 42.9 19.6 44 62-106 120-163 (429)
44 PRK08020 ubiF 2-octaprenyl-3-m 95.2 3.4 7.3E-05 40.9 20.2 57 45-107 112-169 (391)
45 COG0654 UbiH 2-polyprenyl-6-me 95.1 3.8 8.3E-05 40.7 20.1 60 43-108 102-163 (387)
46 PRK07364 2-octaprenyl-6-methox 94.9 4.1 8.9E-05 40.5 19.9 58 45-107 121-181 (415)
47 COG0579 Predicted dehydrogenas 94.5 0.08 1.7E-06 53.5 6.2 60 44-109 152-213 (429)
48 COG2509 Uncharacterized FAD-de 94.4 0.086 1.9E-06 53.1 6.2 60 42-107 170-230 (486)
49 PF13454 NAD_binding_9: FAD-NA 94.1 0.24 5.3E-06 42.8 7.8 41 64-105 114-155 (156)
50 PRK11728 hydroxyglutarate oxid 94.1 0.15 3.2E-06 50.8 7.3 57 44-107 148-204 (393)
51 TIGR03862 flavo_PP4765 unchara 93.9 0.19 4.2E-06 50.1 7.6 63 37-107 77-141 (376)
52 PTZ00383 malate:quinone oxidor 93.5 0.19 4.1E-06 52.1 7.0 59 44-108 210-274 (497)
53 TIGR01377 soxA_mon sarcosine o 93.3 0.2 4.3E-06 49.3 6.6 55 45-106 145-199 (380)
54 TIGR02352 thiamin_ThiO glycine 93.2 0.23 5E-06 47.8 6.8 58 44-108 136-194 (337)
55 TIGR03219 salicylate_mono sali 93.0 0.31 6.7E-06 48.9 7.6 56 45-108 105-160 (414)
56 PRK06847 hypothetical protein; 92.9 0.26 5.7E-06 48.4 6.8 57 45-107 107-163 (375)
57 TIGR00275 flavoprotein, HI0933 92.9 0.32 7E-06 48.8 7.5 59 42-107 102-160 (400)
58 PRK07333 2-octaprenyl-6-methox 92.9 0.28 6.1E-06 48.7 7.0 56 45-106 111-166 (403)
59 PRK07236 hypothetical protein; 92.8 0.41 8.9E-06 47.5 8.0 57 43-107 98-154 (386)
60 PRK05714 2-octaprenyl-3-methyl 92.7 0.36 7.7E-06 48.2 7.6 58 45-108 112-169 (405)
61 PRK11259 solA N-methyltryptoph 92.6 0.28 6E-06 48.2 6.5 56 45-107 149-204 (376)
62 TIGR03329 Phn_aa_oxid putative 92.5 0.27 5.8E-06 50.3 6.4 55 44-106 182-236 (460)
63 PRK00711 D-amino acid dehydrog 92.5 0.32 7E-06 48.6 6.9 57 44-107 200-257 (416)
64 TIGR01984 UbiH 2-polyprenyl-6- 92.5 0.37 7.9E-06 47.5 7.2 58 45-107 105-162 (382)
65 PRK01747 mnmC bifunctional tRN 92.4 0.41 8.8E-06 51.3 7.9 57 45-108 408-464 (662)
66 PRK07588 hypothetical protein; 91.7 0.57 1.2E-05 46.5 7.5 57 45-108 103-159 (391)
67 TIGR03378 glycerol3P_GlpB glyc 91.6 0.44 9.5E-06 48.2 6.5 56 45-106 263-321 (419)
68 TIGR01320 mal_quin_oxido malat 91.6 0.46 1E-05 49.0 6.9 59 44-107 177-240 (483)
69 TIGR02485 CobZ_N-term precorri 91.5 0.49 1.1E-05 47.8 6.9 61 40-105 118-181 (432)
70 PF06039 Mqo: Malate:quinone o 91.5 0.48 1E-05 48.2 6.6 62 44-109 180-246 (488)
71 PRK12409 D-amino acid dehydrog 91.4 0.46 1E-05 47.5 6.6 59 44-108 196-259 (410)
72 PRK09126 hypothetical protein; 91.2 0.65 1.4E-05 45.9 7.4 58 45-107 110-167 (392)
73 PRK13339 malate:quinone oxidor 91.1 0.7 1.5E-05 47.9 7.6 61 44-108 183-248 (497)
74 PRK06753 hypothetical protein; 91.1 0.8 1.7E-05 45.0 7.8 56 45-108 98-153 (373)
75 PRK05257 malate:quinone oxidor 91.0 0.6 1.3E-05 48.3 7.0 60 44-108 182-247 (494)
76 PRK06834 hypothetical protein; 90.9 0.67 1.5E-05 47.8 7.3 57 45-107 100-156 (488)
77 PRK06116 glutathione reductase 90.1 0.73 1.6E-05 46.8 6.7 54 46-105 209-263 (450)
78 TIGR00031 UDP-GALP_mutase UDP- 90.1 0.57 1.2E-05 46.8 5.7 83 13-108 159-248 (377)
79 PRK09897 hypothetical protein; 90.0 0.83 1.8E-05 47.7 7.1 56 44-105 106-164 (534)
80 PRK07190 hypothetical protein; 89.7 0.86 1.9E-05 47.1 6.9 58 45-108 109-166 (487)
81 PRK08163 salicylate hydroxylas 89.7 0.97 2.1E-05 44.8 7.1 58 45-108 109-167 (396)
82 TIGR01292 TRX_reduct thioredox 89.3 0.9 2E-05 42.7 6.2 54 45-105 57-110 (300)
83 PRK04965 NADH:flavorubredoxin 89.1 1.1 2.4E-05 44.4 7.0 53 47-105 185-237 (377)
84 PRK05249 soluble pyridine nucl 89.1 0.95 2.1E-05 46.1 6.6 56 45-106 216-271 (461)
85 PRK05732 2-octaprenyl-6-methox 88.9 1.3 2.7E-05 43.8 7.3 57 46-107 113-169 (395)
86 PRK05868 hypothetical protein; 88.9 1.5 3.3E-05 43.4 7.8 56 46-108 106-161 (372)
87 TIGR01424 gluta_reduc_2 glutat 88.8 1 2.3E-05 45.7 6.7 55 45-105 207-261 (446)
88 PRK07608 ubiquinone biosynthes 88.5 1.2 2.6E-05 43.9 6.8 56 45-107 111-167 (388)
89 PRK06416 dihydrolipoamide dehy 88.5 0.95 2.1E-05 46.1 6.2 55 46-106 214-271 (462)
90 PRK08849 2-octaprenyl-3-methyl 88.4 1.2 2.6E-05 44.2 6.7 58 46-108 111-168 (384)
91 TIGR02032 GG-red-SF geranylger 88.3 1.3 2.8E-05 41.4 6.6 57 45-107 91-148 (295)
92 PLN02172 flavin-containing mon 88.2 0.98 2.1E-05 46.3 6.1 55 45-105 111-171 (461)
93 PRK08013 oxidoreductase; Provi 88.2 1.4 3.1E-05 43.9 7.1 59 45-108 111-169 (400)
94 TIGR03140 AhpF alkyl hydropero 88.1 1.2 2.6E-05 46.3 6.8 57 44-106 266-322 (515)
95 PLN02507 glutathione reductase 88.1 1.3 2.7E-05 46.0 6.8 56 45-106 244-299 (499)
96 PRK15317 alkyl hydroperoxide r 88.0 1.3 2.8E-05 46.0 6.9 56 45-106 266-321 (517)
97 TIGR01350 lipoamide_DH dihydro 87.9 1.2 2.7E-05 45.2 6.6 55 46-106 212-268 (461)
98 TIGR01373 soxB sarcosine oxida 87.9 1.5 3.2E-05 43.8 7.0 57 45-107 183-240 (407)
99 PF00996 GDI: GDP dissociation 87.7 1.3 2.8E-05 45.1 6.4 64 33-102 220-284 (438)
100 PRK08850 2-octaprenyl-6-methox 87.5 1.8 3.9E-05 43.2 7.4 58 45-107 111-168 (405)
101 PRK07845 flavoprotein disulfid 87.2 1.5 3.2E-05 44.9 6.7 54 46-105 219-272 (466)
102 PRK07045 putative monooxygenas 86.9 2.1 4.5E-05 42.4 7.4 59 45-108 106-166 (388)
103 PRK06184 hypothetical protein; 86.6 1.6 3.5E-05 45.0 6.6 56 47-108 111-169 (502)
104 TIGR03364 HpnW_proposed FAD de 86.0 1.5 3.2E-05 42.9 5.7 54 44-107 144-197 (365)
105 PRK10157 putative oxidoreducta 85.9 2 4.2E-05 43.6 6.7 44 62-106 120-163 (428)
106 PRK05329 anaerobic glycerol-3- 85.7 1.9 4.2E-05 43.7 6.5 58 41-105 256-316 (422)
107 PLN02463 lycopene beta cyclase 85.5 2.4 5.1E-05 43.4 7.1 55 45-106 114-168 (447)
108 PF00070 Pyr_redox: Pyridine n 85.4 0.95 2.1E-05 34.2 3.2 41 45-91 40-80 (80)
109 PRK06996 hypothetical protein; 85.3 2.1 4.6E-05 42.6 6.6 54 45-104 115-171 (398)
110 PLN02927 antheraxanthin epoxid 84.9 3.1 6.7E-05 44.7 7.8 57 44-108 193-249 (668)
111 PRK08274 tricarballylate dehyd 84.8 2.1 4.5E-05 43.7 6.4 59 41-105 127-190 (466)
112 PRK08010 pyridine nucleotide-d 84.4 2.5 5.5E-05 42.8 6.7 53 46-105 200-252 (441)
113 PRK12266 glpD glycerol-3-phosp 84.4 2.2 4.8E-05 44.2 6.4 57 45-107 155-216 (508)
114 PRK14727 putative mercuric red 84.1 2.8 6.1E-05 43.0 7.0 54 46-106 229-282 (479)
115 COG1249 Lpd Pyruvate/2-oxoglut 84.1 2.5 5.5E-05 43.3 6.5 54 46-105 215-270 (454)
116 TIGR01813 flavo_cyto_c flavocy 83.9 2.4 5.2E-05 42.8 6.3 58 45-107 130-192 (439)
117 TIGR01423 trypano_reduc trypan 83.7 2.8 6.1E-05 43.3 6.8 56 45-105 231-286 (486)
118 PRK13369 glycerol-3-phosphate 83.6 2.5 5.3E-05 43.8 6.3 57 45-107 155-215 (502)
119 PRK09754 phenylpropionate diox 83.3 3.4 7.3E-05 41.3 7.0 42 62-105 198-239 (396)
120 PRK07818 dihydrolipoamide dehy 83.1 2.8 6.1E-05 42.8 6.4 55 45-105 213-271 (466)
121 PF00890 FAD_binding_2: FAD bi 82.7 2 4.4E-05 42.9 5.2 59 43-107 139-203 (417)
122 PRK06134 putative FAD-binding 82.7 3 6.6E-05 44.0 6.7 57 45-107 217-278 (581)
123 PRK06327 dihydrolipoamide dehy 82.4 3.1 6.8E-05 42.6 6.5 56 45-106 224-283 (475)
124 PRK14694 putative mercuric red 82.3 3.5 7.5E-05 42.2 6.8 55 45-106 218-272 (468)
125 TIGR01421 gluta_reduc_1 glutat 82.2 3.5 7.5E-05 42.0 6.7 55 46-106 208-264 (450)
126 PRK06617 2-octaprenyl-6-methox 82.0 4.4 9.4E-05 40.0 7.2 58 44-108 103-161 (374)
127 PRK07846 mycothione reductase; 81.9 4.2 9.1E-05 41.5 7.2 42 64-106 220-261 (451)
128 KOG2820|consensus 81.9 2.9 6.2E-05 41.0 5.5 65 41-110 146-215 (399)
129 TIGR01790 carotene-cycl lycope 81.8 4.5 9.8E-05 39.9 7.2 57 45-107 85-141 (388)
130 PTZ00052 thioredoxin reductase 81.7 3.7 7.9E-05 42.5 6.7 54 47-106 224-277 (499)
131 PRK06475 salicylate hydroxylas 81.6 4 8.7E-05 40.6 6.8 60 45-109 107-169 (400)
132 TIGR03377 glycerol3P_GlpA glyc 81.0 3.8 8.2E-05 42.5 6.6 58 44-107 127-190 (516)
133 PF05834 Lycopene_cycl: Lycope 80.9 5.3 0.00011 39.6 7.3 56 45-107 87-142 (374)
134 TIGR03452 mycothione_red mycot 80.6 5.3 0.00011 40.8 7.3 42 64-106 223-264 (452)
135 PRK07251 pyridine nucleotide-d 80.6 4.2 9E-05 41.1 6.6 42 62-105 210-251 (438)
136 PF00743 FMO-like: Flavin-bind 79.7 4.5 9.6E-05 42.4 6.6 43 65-107 101-150 (531)
137 PRK06481 fumarate reductase fl 79.7 4.5 9.7E-05 42.0 6.6 54 45-104 190-248 (506)
138 PRK09564 coenzyme A disulfide 79.1 5.2 0.00011 40.4 6.7 54 45-105 191-244 (444)
139 PRK11101 glpA sn-glycerol-3-ph 78.9 4.4 9.6E-05 42.4 6.3 57 45-107 149-211 (546)
140 PRK06370 mercuric reductase; V 78.8 5.7 0.00012 40.5 7.0 53 47-105 214-269 (463)
141 COG0665 DadA Glycine/D-amino a 78.6 5.3 0.00012 39.1 6.5 58 45-109 156-214 (387)
142 PRK12842 putative succinate de 78.5 5.3 0.00011 42.1 6.7 57 45-107 214-275 (574)
143 TIGR02374 nitri_red_nirB nitri 78.2 5.4 0.00012 43.8 6.9 44 62-106 194-237 (785)
144 PRK13748 putative mercuric red 78.0 5.4 0.00012 41.7 6.7 55 45-106 310-364 (561)
145 COG0492 TrxB Thioredoxin reduc 77.4 6 0.00013 38.3 6.3 56 44-107 60-115 (305)
146 PTZ00318 NADH dehydrogenase-li 77.2 5.7 0.00012 40.1 6.4 50 46-105 229-278 (424)
147 TIGR01989 COQ6 Ubiquinone bios 77.1 6.1 0.00013 40.0 6.5 59 45-108 117-184 (437)
148 PRK12845 3-ketosteroid-delta-1 76.9 5.4 0.00012 42.0 6.3 59 41-106 214-277 (564)
149 TIGR03385 CoA_CoA_reduc CoA-di 76.8 5.9 0.00013 39.8 6.3 52 47-106 181-232 (427)
150 PRK08244 hypothetical protein; 76.6 5.6 0.00012 40.9 6.2 45 62-107 112-159 (493)
151 PRK06175 L-aspartate oxidase; 76.4 7.4 0.00016 39.5 6.9 56 45-105 128-187 (433)
152 TIGR02053 MerA mercuric reduct 76.4 6.1 0.00013 40.3 6.4 53 47-105 209-264 (463)
153 TIGR03169 Nterm_to_SelD pyridi 76.2 5.4 0.00012 39.0 5.8 49 47-105 193-241 (364)
154 PRK06183 mhpA 3-(3-hydroxyphen 76.0 5.7 0.00012 41.4 6.1 44 64-108 128-175 (538)
155 PRK07121 hypothetical protein; 75.9 8.1 0.00017 39.8 7.2 60 43-107 175-239 (492)
156 PRK06912 acoL dihydrolipoamide 75.9 7.2 0.00016 39.8 6.7 56 45-106 211-267 (458)
157 TIGR01438 TGR thioredoxin and 75.3 6.7 0.00015 40.4 6.4 53 47-105 222-277 (484)
158 KOG1439|consensus 75.1 10 0.00022 38.1 7.1 43 37-85 224-266 (440)
159 PRK06115 dihydrolipoamide dehy 74.8 6.8 0.00015 40.1 6.3 55 46-106 216-275 (466)
160 PRK14989 nitrite reductase sub 74.2 8.3 0.00018 42.8 7.0 45 62-106 199-244 (847)
161 PRK13977 myosin-cross-reactive 73.7 5.4 0.00012 42.0 5.1 84 18-106 190-292 (576)
162 PRK08243 4-hydroxybenzoate 3-m 72.9 8.5 0.00018 38.2 6.3 60 45-109 103-165 (392)
163 KOG0685|consensus 72.7 1.8 3.9E-05 44.1 1.3 30 181-210 309-338 (498)
164 PF01494 FAD_binding_3: FAD bi 71.8 4.5 9.8E-05 38.6 3.9 58 45-108 111-173 (356)
165 PRK07538 hypothetical protein; 71.8 9.1 0.0002 38.3 6.2 59 45-108 102-166 (413)
166 PRK13512 coenzyme A disulfide 71.3 9.9 0.00021 38.5 6.4 50 46-105 190-239 (438)
167 TIGR03385 CoA_CoA_reduc CoA-di 71.3 8.5 0.00018 38.7 5.9 43 62-105 56-101 (427)
168 PRK11445 putative oxidoreducta 71.3 14 0.00031 36.1 7.4 45 63-108 111-158 (351)
169 PLN02697 lycopene epsilon cycl 71.2 11 0.00023 39.5 6.7 56 45-107 192-248 (529)
170 PTZ00058 glutathione reductase 70.9 12 0.00026 39.4 7.1 55 46-105 279-334 (561)
171 PRK12843 putative FAD-binding 70.6 10 0.00022 40.1 6.5 57 45-107 221-282 (578)
172 PRK06126 hypothetical protein; 70.4 9.3 0.0002 39.8 6.1 44 64-108 141-189 (545)
173 PRK05945 sdhA succinate dehydr 69.6 13 0.00029 39.1 7.2 56 45-106 135-196 (575)
174 PRK06185 hypothetical protein; 69.5 14 0.0003 36.6 7.0 58 45-107 108-169 (407)
175 PRK05976 dihydrolipoamide dehy 68.7 14 0.00029 37.9 6.8 57 45-106 221-280 (472)
176 PRK09564 coenzyme A disulfide 68.7 11 0.00023 38.1 5.9 44 62-106 68-114 (444)
177 TIGR03862 flavo_PP4765 unchara 67.6 5.6 0.00012 39.8 3.6 37 334-370 336-375 (376)
178 PLN02546 glutathione reductase 67.2 14 0.0003 38.9 6.6 45 62-106 305-349 (558)
179 PRK12835 3-ketosteroid-delta-1 66.4 14 0.00031 39.0 6.6 59 44-107 212-275 (584)
180 TIGR01812 sdhA_frdA_Gneg succi 66.4 14 0.00031 38.7 6.6 56 45-106 129-190 (566)
181 PLN02464 glycerol-3-phosphate 66.1 17 0.00036 38.9 7.0 59 44-107 231-296 (627)
182 TIGR02360 pbenz_hydroxyl 4-hyd 66.0 14 0.0003 36.7 6.2 61 43-108 101-164 (390)
183 PRK12844 3-ketosteroid-delta-1 66.0 14 0.00031 38.8 6.5 57 45-107 208-269 (557)
184 TIGR01816 sdhA_forward succina 65.5 16 0.00036 38.4 6.8 56 45-106 119-180 (565)
185 TIGR01292 TRX_reduct thioredox 65.2 7.1 0.00015 36.6 3.7 37 333-370 264-300 (300)
186 COG0644 FixC Dehydrogenases (f 65.1 15 0.00033 36.6 6.2 44 62-106 107-151 (396)
187 PRK12831 putative oxidoreducta 63.6 8.5 0.00018 39.5 4.1 37 333-371 425-461 (464)
188 PRK09754 phenylpropionate diox 63.5 14 0.0003 36.8 5.6 41 63-106 71-111 (396)
189 PRK08401 L-aspartate oxidase; 63.1 17 0.00036 37.3 6.1 56 44-107 119-175 (466)
190 PRK12839 hypothetical protein; 62.5 22 0.00047 37.6 7.0 57 45-106 214-275 (572)
191 TIGR02374 nitri_red_nirB nitri 62.5 12 0.00026 41.1 5.3 42 62-106 66-107 (785)
192 TIGR00551 nadB L-aspartate oxi 62.4 16 0.00035 37.6 6.0 58 45-107 128-189 (488)
193 PRK04965 NADH:flavorubredoxin 62.1 14 0.00031 36.3 5.4 41 62-106 70-110 (377)
194 PRK07804 L-aspartate oxidase; 61.8 18 0.00039 37.8 6.2 56 45-106 144-209 (541)
195 TIGR03169 Nterm_to_SelD pyridi 61.4 11 0.00023 36.9 4.3 41 62-106 66-106 (364)
196 PRK04176 ribulose-1,5-biphosph 61.4 20 0.00043 33.7 5.9 57 45-107 104-173 (257)
197 PRK06263 sdhA succinate dehydr 61.3 21 0.00046 37.3 6.7 56 45-106 134-196 (543)
198 COG1252 Ndh NADH dehydrogenase 60.7 17 0.00037 36.7 5.6 52 45-106 209-261 (405)
199 PRK07512 L-aspartate oxidase; 59.9 17 0.00036 37.8 5.6 58 44-106 135-196 (513)
200 PRK07843 3-ketosteroid-delta-1 59.8 26 0.00056 36.8 7.0 56 45-106 208-268 (557)
201 PF01134 GIDA: Glucose inhibit 59.8 32 0.0007 34.6 7.3 57 40-105 93-150 (392)
202 TIGR01316 gltA glutamate synth 59.6 12 0.00025 38.2 4.3 36 333-370 414-449 (449)
203 PF13434 K_oxygenase: L-lysine 59.2 11 0.00024 37.1 3.9 40 65-104 294-338 (341)
204 PRK08275 putative oxidoreducta 59.0 24 0.00053 37.0 6.7 55 46-106 138-199 (554)
205 PRK13512 coenzyme A disulfide 59.0 18 0.00039 36.6 5.5 43 63-106 71-116 (438)
206 PRK12769 putative oxidoreducta 58.7 12 0.00025 40.3 4.2 38 333-372 616-653 (654)
207 PRK07573 sdhA succinate dehydr 58.6 24 0.00053 37.8 6.7 53 48-106 173-231 (640)
208 PRK10262 thioredoxin reductase 58.6 31 0.00066 33.1 6.9 54 46-105 186-246 (321)
209 PRK06452 sdhA succinate dehydr 58.3 23 0.0005 37.3 6.3 57 45-107 136-198 (566)
210 COG0446 HcaD Uncharacterized N 58.2 22 0.00047 34.8 5.8 56 45-106 178-236 (415)
211 PF13434 K_oxygenase: L-lysine 57.5 12 0.00026 36.7 3.9 78 19-104 65-156 (341)
212 PRK08626 fumarate reductase fl 57.4 27 0.00058 37.6 6.7 58 43-106 156-219 (657)
213 PRK09078 sdhA succinate dehydr 57.2 29 0.00064 36.8 6.9 57 45-106 149-211 (598)
214 KOG1399|consensus 56.9 35 0.00076 35.0 7.1 84 17-107 62-153 (448)
215 PRK06467 dihydrolipoamide dehy 56.3 30 0.00065 35.4 6.7 41 65-106 229-273 (471)
216 PRK05675 sdhA succinate dehydr 56.1 36 0.00077 35.9 7.3 58 44-106 125-188 (570)
217 TIGR00292 thiazole biosynthesi 56.1 28 0.00061 32.7 5.9 56 45-106 100-169 (254)
218 PRK06069 sdhA succinate dehydr 55.7 30 0.00065 36.5 6.7 57 45-106 137-199 (577)
219 PRK12810 gltD glutamate syntha 54.8 14 0.0003 37.9 3.9 37 333-371 429-465 (471)
220 PRK08205 sdhA succinate dehydr 54.8 34 0.00074 36.1 7.0 57 45-107 140-206 (583)
221 COG2072 TrkA Predicted flavopr 54.5 23 0.00051 36.1 5.5 41 65-105 99-142 (443)
222 PRK09231 fumarate reductase fl 54.3 40 0.00086 35.7 7.3 57 45-106 133-195 (582)
223 PRK06854 adenylylsulfate reduc 54.3 34 0.00074 36.4 6.9 56 45-106 132-194 (608)
224 PRK12809 putative oxidoreducta 53.9 13 0.00028 39.8 3.6 38 333-372 599-636 (639)
225 PRK06292 dihydrolipoamide dehy 53.8 43 0.00094 33.9 7.4 53 46-105 211-266 (460)
226 TIGR01789 lycopene_cycl lycope 53.7 35 0.00075 33.8 6.4 49 45-106 89-137 (370)
227 KOG2844|consensus 53.0 20 0.00043 38.5 4.6 58 44-107 186-243 (856)
228 PRK07803 sdhA succinate dehydr 52.8 32 0.00069 36.8 6.4 60 45-105 138-211 (626)
229 PRK12771 putative glutamate sy 52.5 15 0.00033 38.5 3.9 37 333-371 408-444 (564)
230 PRK12837 3-ketosteroid-delta-1 52.2 40 0.00087 35.0 6.9 57 45-106 173-234 (513)
231 PRK08132 FAD-dependent oxidore 52.0 51 0.0011 34.3 7.7 43 64-107 140-185 (547)
232 COG1251 NirB NAD(P)H-nitrite r 51.9 25 0.00054 38.1 5.2 56 42-105 56-111 (793)
233 KOG1346|consensus 51.7 13 0.00028 37.6 2.9 69 31-105 373-447 (659)
234 PRK10262 thioredoxin reductase 51.3 42 0.00091 32.1 6.5 53 46-106 64-116 (321)
235 PRK08958 sdhA succinate dehydr 51.1 50 0.0011 35.0 7.5 57 45-106 143-205 (588)
236 KOG0404|consensus 50.9 23 0.0005 33.0 4.2 55 45-107 70-124 (322)
237 KOG1336|consensus 50.5 22 0.00048 36.4 4.4 43 62-107 139-181 (478)
238 TIGR01318 gltD_gamma_fam gluta 50.4 20 0.00044 36.7 4.3 37 333-371 430-466 (467)
239 PRK14989 nitrite reductase sub 50.0 28 0.0006 38.7 5.5 42 62-106 71-112 (847)
240 COG5044 MRS6 RAB proteins gera 49.7 24 0.00051 35.2 4.3 62 32-101 216-278 (434)
241 TIGR02023 BchP-ChlP geranylger 49.0 35 0.00076 33.8 5.7 36 336-371 265-303 (388)
242 PRK12779 putative bifunctional 48.6 18 0.0004 40.6 3.9 37 333-371 591-627 (944)
243 PRK08071 L-aspartate oxidase; 48.0 43 0.00093 34.7 6.3 55 45-106 130-189 (510)
244 KOG1335|consensus 47.5 41 0.00088 33.9 5.6 43 64-106 266-313 (506)
245 TIGR01317 GOGAT_sm_gam glutama 47.5 20 0.00043 37.0 3.7 37 333-371 443-479 (485)
246 PRK12770 putative glutamate sy 47.2 24 0.00051 34.5 4.1 37 333-371 314-350 (352)
247 TIGR03143 AhpF_homolog putativ 47.1 42 0.00091 35.2 6.1 54 45-106 60-113 (555)
248 COG2081 Predicted flavoprotein 47.0 18 0.00039 36.3 3.1 37 334-370 368-407 (408)
249 TIGR01176 fum_red_Fp fumarate 46.9 53 0.0012 34.7 6.9 57 45-106 132-194 (580)
250 PRK11749 dihydropyrimidine deh 45.7 23 0.0005 36.0 3.8 37 333-371 416-452 (457)
251 PRK12778 putative bifunctional 45.7 23 0.00049 38.7 4.0 39 332-372 713-751 (752)
252 PRK04176 ribulose-1,5-biphosph 45.3 20 0.00044 33.7 3.1 39 334-372 213-256 (257)
253 PRK12814 putative NADPH-depend 44.9 25 0.00053 37.8 4.0 37 333-371 465-501 (652)
254 TIGR00292 thiazole biosynthesi 44.7 23 0.0005 33.2 3.4 39 333-371 211-254 (254)
255 KOG1336|consensus 44.5 42 0.00092 34.4 5.3 45 62-106 267-312 (478)
256 COG1635 THI4 Ribulose 1,5-bisp 44.5 17 0.00037 33.8 2.4 40 333-372 217-261 (262)
257 PTZ00318 NADH dehydrogenase-li 44.4 59 0.0013 32.7 6.5 39 333-371 307-348 (424)
258 PTZ00139 Succinate dehydrogena 44.1 56 0.0012 34.9 6.6 56 45-105 166-227 (617)
259 PRK07057 sdhA succinate dehydr 43.7 63 0.0014 34.2 6.9 57 45-106 148-210 (591)
260 PTZ00153 lipoamide dehydrogena 43.2 70 0.0015 34.5 7.1 44 62-106 366-426 (659)
261 PRK07845 flavoprotein disulfid 42.8 60 0.0013 33.2 6.3 35 332-368 302-336 (466)
262 PRK05192 tRNA uridine 5-carbox 42.6 63 0.0014 34.5 6.5 42 64-107 115-157 (618)
263 PRK07395 L-aspartate oxidase; 42.3 47 0.001 34.9 5.6 59 44-106 133-196 (553)
264 TIGR01811 sdhA_Bsu succinate d 42.3 95 0.0021 33.0 7.9 60 45-105 129-194 (603)
265 PRK12775 putative trifunctiona 40.9 30 0.00066 39.2 4.1 37 333-371 719-755 (1006)
266 PRK13984 putative oxidoreducta 40.3 34 0.00073 36.2 4.2 37 333-372 567-603 (604)
267 PRK12834 putative FAD-binding 40.2 72 0.0016 33.4 6.6 59 46-106 149-226 (549)
268 PF04820 Trp_halogenase: Trypt 40.1 62 0.0013 33.1 5.9 58 41-107 153-211 (454)
269 PF07992 Pyr_redox_2: Pyridine 39.6 28 0.00061 30.3 3.0 42 64-106 72-121 (201)
270 PLN00128 Succinate dehydrogena 38.6 74 0.0016 34.1 6.4 57 45-106 187-249 (635)
271 PF06100 Strep_67kDa_ant: Stre 38.1 73 0.0016 33.0 6.0 60 42-106 204-273 (500)
272 TIGR00136 gidA glucose-inhibit 38.1 88 0.0019 33.4 6.8 46 64-110 111-157 (617)
273 PRK10157 putative oxidoreducta 37.6 35 0.00076 34.5 3.7 36 336-371 296-336 (428)
274 PRK09853 putative selenate red 37.4 44 0.00096 37.8 4.6 36 334-371 807-842 (1019)
275 PF03486 HI0933_like: HI0933-l 37.4 26 0.00057 35.4 2.7 30 335-364 376-408 (409)
276 COG0578 GlpA Glycerol-3-phosph 37.0 65 0.0014 33.8 5.5 87 46-150 165-259 (532)
277 COG1252 Ndh NADH dehydrogenase 36.5 45 0.00098 33.7 4.2 40 332-371 289-332 (405)
278 PRK11749 dihydropyrimidine deh 36.0 66 0.0014 32.7 5.4 43 62-105 323-385 (457)
279 TIGR03315 Se_ygfK putative sel 35.7 44 0.00096 37.8 4.3 35 333-369 804-838 (1012)
280 PTZ00306 NADH-dependent fumara 34.1 83 0.0018 36.3 6.3 60 45-106 544-619 (1167)
281 PLN02661 Putative thiazole syn 33.8 40 0.00087 33.5 3.2 40 333-372 285-329 (357)
282 TIGR03140 AhpF alkyl hydropero 33.7 67 0.0014 33.3 5.1 42 63-105 401-448 (515)
283 PRK12810 gltD glutamate syntha 33.6 73 0.0016 32.6 5.3 43 62-105 341-398 (471)
284 PRK08294 phenol 2-monooxygenas 33.5 1E+02 0.0022 33.1 6.5 44 65-108 158-211 (634)
285 PF00732 GMC_oxred_N: GMC oxid 32.0 1.6E+02 0.0035 27.5 7.1 42 64-105 207-256 (296)
286 KOG0405|consensus 30.9 1.1E+02 0.0023 30.6 5.5 61 41-106 225-286 (478)
287 PLN02815 L-aspartate oxidase 29.5 1.1E+02 0.0023 32.6 5.9 57 45-105 155-220 (594)
288 COG3486 IucD Lysine/ornithine 28.9 1.5E+02 0.0034 30.0 6.4 42 64-106 292-339 (436)
289 TIGR03143 AhpF_homolog putativ 28.6 44 0.00095 35.1 2.7 37 333-370 272-308 (555)
290 TIGR00275 flavoprotein, HI0933 28.1 39 0.00084 33.8 2.2 29 335-363 368-399 (400)
291 PRK06116 glutathione reductase 27.5 74 0.0016 32.2 4.1 35 332-368 293-327 (450)
292 COG1251 NirB NAD(P)H-nitrite r 27.1 47 0.001 36.1 2.6 43 62-105 199-241 (793)
293 TIGR01372 soxA sarcosine oxida 25.9 1.1E+02 0.0025 34.5 5.5 44 62-106 363-410 (985)
294 TIGR01316 gltA glutamate synth 25.9 1.4E+02 0.0031 30.3 5.8 44 62-105 321-385 (449)
295 TIGR01424 gluta_reduc_2 glutat 25.7 90 0.002 31.6 4.4 35 332-368 291-325 (446)
296 PRK12770 putative glutamate sy 24.9 1.2E+02 0.0026 29.5 5.0 43 62-105 222-284 (352)
297 PF01134 GIDA: Glucose inhibit 24.8 77 0.0017 31.9 3.5 33 335-370 356-388 (392)
298 PRK05976 dihydrolipoamide dehy 24.4 1.4E+02 0.003 30.5 5.4 33 334-368 310-342 (472)
299 PLN02507 glutathione reductase 23.9 1.9E+02 0.0042 29.9 6.4 35 332-368 328-362 (499)
300 TIGR02028 ChlP geranylgeranyl 23.8 84 0.0018 31.3 3.6 35 336-370 271-308 (398)
301 PF03275 GLF: UDP-galactopyran 23.5 11 0.00024 34.3 -2.4 51 39-108 44-94 (204)
302 TIGR01421 gluta_reduc_1 glutat 23.2 1E+02 0.0022 31.3 4.1 35 332-368 293-327 (450)
303 PRK14727 putative mercuric red 23.0 87 0.0019 32.1 3.7 35 332-368 311-345 (479)
304 PLN02661 Putative thiazole syn 22.5 1.6E+02 0.0034 29.3 5.1 56 45-105 172-242 (357)
305 KOG2404|consensus 22.2 1.5E+02 0.0033 29.3 4.7 43 65-108 160-207 (477)
306 COG3486 IucD Lysine/ornithine 22.1 96 0.0021 31.4 3.5 77 20-105 69-155 (436)
307 PF12831 FAD_oxidored: FAD dep 22.0 30 0.00065 35.0 0.0 61 41-110 89-153 (428)
308 PRK06370 mercuric reductase; V 21.7 1.2E+02 0.0027 30.7 4.4 36 332-369 299-334 (463)
309 COG0492 TrxB Thioredoxin reduc 21.0 78 0.0017 30.6 2.7 40 331-371 262-301 (305)
310 PRK13748 putative mercuric red 20.8 1E+02 0.0022 32.2 3.7 35 332-368 393-427 (561)
311 PRK07818 dihydrolipoamide dehy 20.8 1.1E+02 0.0024 31.1 3.9 35 332-368 301-335 (466)
312 KOG3851|consensus 20.8 43 0.00092 32.9 0.8 56 41-106 86-144 (446)
313 PRK15317 alkyl hydroperoxide r 20.5 64 0.0014 33.4 2.1 38 332-370 474-511 (517)
314 TIGR02023 BchP-ChlP geranylger 20.5 1.2E+02 0.0026 29.9 3.9 55 46-107 93-155 (388)
315 TIGR01810 betA choline dehydro 20.4 1.7E+02 0.0037 30.4 5.2 38 334-371 492-531 (532)
316 PRK14694 putative mercuric red 20.3 1.1E+02 0.0024 31.1 3.8 35 332-368 300-334 (468)
No 1
>KOG0685|consensus
Probab=100.00 E-value=1.3e-42 Score=339.45 Aligned_cols=306 Identities=40% Similarity=0.732 Sum_probs=264.2
Q ss_pred chhhhhhhhhccCCchhhcchhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCC--ceEEcCCceEEEEec
Q psy7654 2 DFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLG--KKLLLNKEVTKINWE 79 (373)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G--~~I~ln~~V~~I~~~ 79 (373)
+.++|+.|++.+.++++++|.+.+..|..++|+....|.+-|+..+++-|++.++.+ .+.+| ++++++++|.+|+.+
T Consensus 180 ~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~-~i~~~~~~~~~~~~rv~~I~~~ 258 (498)
T KOG0685|consen 180 NVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIPAQ-NIELGLWKRIHLNTRVENINWK 258 (498)
T ss_pred HHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCCCc-chhcCchhhhcccccceeeccC
Confidence 568999999999999999999999999999998667788999999999999988642 34555 677778999999995
Q ss_pred CCCcEEEEeCCCcEEEcCEEEEcCCccccccccc-ccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEe
Q psy7654 80 DANGVLVTCADGSQYSADKVLITVSLGVFKSDLI-TFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFW 158 (373)
Q Consensus 80 ~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i-~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~ 158 (373)
..+.|.|+++||+.+.||+||||+|+.+|+..+- .|.|+||..|++||+++.+|.+.|+||+|.+|||+.+..++.++|
T Consensus 259 ~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw 338 (498)
T KOG0685|consen 259 NTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLW 338 (498)
T ss_pred CCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEE
Confidence 5678999999999999999999999999988554 689999999999999999999999999999999999988999988
Q ss_pred cCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeee
Q psy7654 159 THDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGF 238 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~ 238 (373)
-+.+..+ + +... ..|..+++.+
T Consensus 339 ~~e~l~e-~-------------------------r~~~--------------------------------~~w~~~~~~f 360 (498)
T KOG0685|consen 339 LDEDLEE-L-------------------------RSTL--------------------------------DAWEEDIMGF 360 (498)
T ss_pred ecCcHHH-H-------------------------hhhh--------------------------------HHHHhhceEE
Confidence 6554221 1 0000 2466666777
Q ss_pred eecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccc
Q psy7654 239 YLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMN 318 (373)
Q Consensus 239 ~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~ 318 (373)
...+..+.+|++|+.|..++.|+++|||++.+.+...|+++++. +.+|+|..+..++|..|||++|+|++..+|+...
T Consensus 361 ~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n-~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~- 438 (498)
T KOG0685|consen 361 QPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKN-PEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGS- 438 (498)
T ss_pred EEcCcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCC-CCCCCchhhhhhcccCCCccCceeeEeecccccc-
Confidence 77777778999999999999999999999999999999999993 5799999999999999999999999999998664
Q ss_pred cchHhhccccc--CCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhh
Q psy7654 319 ASRHDLEAPLS--NGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369 (373)
Q Consensus 319 ~~~~~l~~p~~--~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~ 369 (373)
....+..|++ +.+++|.|.||||+|+..++.+++||++||+|.|+++++.
T Consensus 439 -d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~ 490 (498)
T KOG0685|consen 439 -DTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEH 490 (498)
T ss_pred -ccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHH
Confidence 3445555554 5567789999999999989999999999999999999874
No 2
>PLN02676 polyamine oxidase
Probab=100.00 E-value=3.9e-39 Score=329.06 Aligned_cols=284 Identities=31% Similarity=0.494 Sum_probs=222.7
Q ss_pred ccCCchhhcchhhhhh---hhccCCcceeeecCCcHHHHHHHHHHhCCCCCC-CCCCceEEcCCceEEEEecCCCcEEEE
Q psy7654 12 DASDSWFETSAKRYNS---FVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTP-IDLGKKLLLNKEVTKINWEDANGVLVT 87 (373)
Q Consensus 12 ~~g~~~~~~S~~~~~~---~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~-~~~G~~I~ln~~V~~I~~~~~~~v~v~ 87 (373)
..+.+.+++|++.+.. +...++...++-.+||+++|+++|++.+..+.+ .-.+++|+||++|++|++ ++++|.|+
T Consensus 188 ~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~-~~~gV~V~ 266 (487)
T PLN02676 188 EFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISY-SKNGVTVK 266 (487)
T ss_pred eeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEE-cCCcEEEE
Confidence 3588899999998753 222333333222268999999999998742100 011257999999999999 78899999
Q ss_pred eCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCC
Q psy7654 88 CADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPL 167 (373)
Q Consensus 88 ~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~ 167 (373)
+.+|+++.||+||+|+|+++|+...|.|.|+||..++++++++.|+.+.||++.|++|||++......+++...+
T Consensus 267 ~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~----- 341 (487)
T PLN02676 267 TEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHER----- 341 (487)
T ss_pred ECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccc-----
Confidence 999989999999999999999875689999999999999999999999999999999999874222111111100
Q ss_pred cccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCce
Q psy7654 168 FKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLT 247 (373)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~ 247 (373)
.+.. ..|.. ++.. .+ +.++
T Consensus 342 ------------------------------------~~~~---------------------~~~~~--~~~~-~~-~~~~ 360 (487)
T PLN02676 342 ------------------------------------RGYY---------------------PFWQH--LENE-YP-GSNV 360 (487)
T ss_pred ------------------------------------cccc---------------------hhhhh--cccC-CC-CCCE
Confidence 0000 01111 1101 12 2358
Q ss_pred EEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhccc
Q psy7654 248 FLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAP 327 (373)
Q Consensus 248 L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p 327 (373)
|++++.++.+..+..++++++++.++++|+++||. +.+.|..+..++|.+|||++|+|+++.||+.. ...+.|++|
T Consensus 361 l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~--~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~--~~~~~L~~P 436 (487)
T PLN02676 361 LFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGP--NIPEATDILVPRWWSNRFFKGSYSNWPIGVSR--YEFDQIRAP 436 (487)
T ss_pred EEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCC--CCCCcceEEecccCCCCCCCcccCCCCCCCCh--hHHHHHhCC
Confidence 88899999999999999999999999999999985 46789999999999999999999999998753 356788999
Q ss_pred ccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654 328 LSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372 (373)
Q Consensus 328 ~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~ 372 (373)
++ |||||||+++..++||||||++||+|||++|++.++.
T Consensus 437 ~g------ri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 437 VG------RVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred CC------ceEEeccccccccccchHHHHHHHHHHHHHHHHHhcc
Confidence 86 8999999999888999999999999999999987754
No 3
>PLN02568 polyamine oxidase
Probab=100.00 E-value=6.5e-39 Score=330.30 Aligned_cols=296 Identities=30% Similarity=0.443 Sum_probs=225.2
Q ss_pred hhhhhhccCCchhhcchhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE
Q psy7654 6 KAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL 85 (373)
Q Consensus 6 ~~~~~~~~g~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~ 85 (373)
++.+.+....++..+|+..+..|..++|.+.. ++||+++|+++|++.+++ ..|++|++|++|++ .+++|.
T Consensus 205 ~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~--i~gG~~~Li~~La~~L~~-------~~I~ln~~V~~I~~-~~~~v~ 274 (539)
T PLN02568 205 NTQRTYTSADDLSTLDLAAESEYRMFPGEEIT--IAKGYLSVIEALASVLPP-------GTIQLGRKVTRIEW-QDEPVK 274 (539)
T ss_pred HhhccccccccHhhccccccCcceecCCCeEE--ECCcHHHHHHHHHhhCCC-------CEEEeCCeEEEEEE-eCCeEE
Confidence 33433333444455666555455556676543 489999999999999963 57999999999999 788899
Q ss_pred EEeCCCcEEEcCEEEEcCCccccccc----ccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCC-----CCceeE
Q psy7654 86 VTCADGSQYSADKVLITVSLGVFKSD----LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD-----IRGYNF 156 (373)
Q Consensus 86 v~~~~G~~~~ad~VIvtiP~~~l~~~----~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~-----~~~~~~ 156 (373)
|++.+|+++.||+||+|+|+++|+.. .|.|.|+||..++++|+++.|+.+.||++.|+++||... ...+.+
T Consensus 275 V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~ 354 (539)
T PLN02568 275 LHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQM 354 (539)
T ss_pred EEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceee
Confidence 99999989999999999999999853 257999999999999999999999999999999998652 111122
Q ss_pred EecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeee
Q psy7654 157 FWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLY 236 (373)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~ 236 (373)
++..++.. ..+. ....|...++
T Consensus 355 ~~~~~~~~--------------------------------------~~~~--------------------~~~~~~~~~~ 376 (539)
T PLN02568 355 AFHRSDSE--------------------------------------ARHD--------------------KIPWWMRRTA 376 (539)
T ss_pred eecccchh--------------------------------------hhcc--------------------cccchhhccc
Confidence 21111000 0000 0012333333
Q ss_pred eeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCC--------------------CCCCceEEecc
Q psy7654 237 GFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYT--------------------IPEPSRVFHSS 296 (373)
Q Consensus 237 ~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~--------------------~~~~~~~~~~~ 296 (373)
+++....+.++|++|++|+.|.+++.++++++++.+++.|+++||.... .++|..+..++
T Consensus 377 ~~~~~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~ 456 (539)
T PLN02568 377 SICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSK 456 (539)
T ss_pred cccccCCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCC
Confidence 3333333567999999999999999999999999999999999984211 14689999999
Q ss_pred CCCCCccccccccccccCCccccchHhhcccccC-------CCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhh
Q psy7654 297 WGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSN-------GQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369 (373)
Q Consensus 297 W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~-------~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~ 369 (373)
|.+|||++|+|++..||... .....|++|+++ ....++||||||+|+..++|+||||++||+|||++|++.
T Consensus 457 W~~dp~~~GsYs~~~~g~~~--~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~ 534 (539)
T PLN02568 457 WGTDPLFLGSYSYVAVGSSG--DDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQH 534 (539)
T ss_pred CCCCCccCCccCCCcCCCCh--hHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999988898764 356899999862 112237999999999999999999999999999999986
Q ss_pred CC
Q psy7654 370 DP 371 (373)
Q Consensus 370 ~~ 371 (373)
.+
T Consensus 535 ~~ 536 (539)
T PLN02568 535 YK 536 (539)
T ss_pred hc
Confidence 54
No 4
>PLN02976 amine oxidase
Probab=100.00 E-value=2.8e-39 Score=349.54 Aligned_cols=272 Identities=29% Similarity=0.483 Sum_probs=222.3
Q ss_pred CCchhhcchhhhhh---hhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEec---------CC
Q psy7654 14 SDSWFETSAKRYNS---FVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE---------DA 81 (373)
Q Consensus 14 g~~~~~~S~~~~~~---~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~---------~~ 81 (373)
|.+++++|+.++.. |..++|.+.+ ++|||++|+++|++.+. |+||++|++|.+. .+
T Consensus 904 aa~L~eVSl~~~~qd~~y~~fgG~~~r--IkGGYqqLIeALAe~L~----------IrLNtpVtrId~s~~d~~~~~s~~ 971 (1713)
T PLN02976 904 AALLKEVSLPYWNQDDVYGGFGGAHCM--IKGGYSNVVESLAEGLD----------IHLNHVVTDVSYGSKDAGASGSSR 971 (1713)
T ss_pred cCCHHHhhhhhhhcccccccCCCceEE--eCCCHHHHHHHHHhhCC----------eecCCeEEEEEecCCcccccccCC
Confidence 78899999988763 4445665443 38999999999999773 9999999999983 14
Q ss_pred CcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCC
Q psy7654 82 NGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHD 161 (373)
Q Consensus 82 ~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~ 161 (373)
++|.|++.+|+++.||+||||+|+++|+...|.|.|+||..+.++|+++.||.+.||+|.|+++||+.+...++..+...
T Consensus 972 dGVtVtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edt 1051 (1713)
T PLN02976 972 KKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEET 1051 (1713)
T ss_pred CcEEEEECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccC
Confidence 67999999998999999999999999986558999999999999999999999999999999999998644443321110
Q ss_pred CCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeec
Q psy7654 162 DKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241 (373)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~ 241 (373)
+. .|. .|. .++...
T Consensus 1052 dl----------------------------------------rG~-----------------------~~~--~wnlr~- 1065 (1713)
T PLN02976 1052 DL----------------------------------------RGQ-----------------------CFM--FWNVKK- 1065 (1713)
T ss_pred CC----------------------------------------Cce-----------------------EEE--eccCCC-
Confidence 00 110 011 122211
Q ss_pred CCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccch
Q psy7654 242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASR 321 (373)
Q Consensus 242 ~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~ 321 (373)
+.+.++|++|++|..|..+..++++++++.+++.|+++||.. ..++|..+.+++|..|||++|+|++..||+.. ..+
T Consensus 1066 psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~-~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~--~d~ 1142 (1713)
T PLN02976 1066 TVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEA-LVPDPVASVVTDWGRDPFSYGAYSYVAIGASG--EDY 1142 (1713)
T ss_pred CCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcc-cccCcceeEEecCCCCCCcCccccCCCCCCCc--hHH
Confidence 223468999999999999999999999999999999999952 35789999999999999999999999999754 356
Q ss_pred HhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 322 HDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 322 ~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
..|.+|+++ +||||||+|+..++||||||++||+|||.+|+..+.
T Consensus 1143 d~LAePVgg-----RLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1143 DILGRPVEN-----CLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred HHHhCCCCC-----cEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 789999874 799999999998999999999999999999998763
No 5
>PLN03000 amine oxidase
Probab=100.00 E-value=5.8e-39 Score=339.30 Aligned_cols=273 Identities=27% Similarity=0.439 Sum_probs=220.4
Q ss_pred CCchhhcchhhhhhhh--ccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC
Q psy7654 14 SDSWFETSAKRYNSFV--THEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG 91 (373)
Q Consensus 14 g~~~~~~S~~~~~~~~--~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G 91 (373)
+..++.+|+..+.... ...|.+.+ ++||+++|+++|++.|. |++|++|++|++ .+++|.|++.+
T Consensus 350 as~ls~LSl~~wdqd~~~e~~G~~~~--v~GG~~~LieaLa~~L~----------I~Ln~~Vt~I~~-~~dgV~V~~~~- 415 (881)
T PLN03000 350 AGLVSKLSLAFWDQDDPYDMGGDHCF--LPGGNGRLVQALAENVP----------ILYEKTVQTIRY-GSNGVKVIAGN- 415 (881)
T ss_pred ccCHHHHHHHHhhhcccccCCCceEE--eCCCHHHHHHHHHhhCC----------cccCCcEEEEEE-CCCeEEEEECC-
Confidence 4568888876553311 23455443 48999999999999873 999999999999 78899998764
Q ss_pred cEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccc
Q psy7654 92 SQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDT 171 (373)
Q Consensus 92 ~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 171 (373)
+++.||+||||+|+.+++...|.|.|+||..+.++|+++.|+.+.||++.|+++||+.+...+++++...+.
T Consensus 416 ~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~-------- 487 (881)
T PLN03000 416 QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNY-------- 487 (881)
T ss_pred cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCC--------
Confidence 489999999999999999655899999999999999999999999999999999999876666666322110
Q ss_pred cccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEE
Q psy7654 172 AVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGW 251 (373)
Q Consensus 172 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~ 251 (373)
++.. + .++++.. ..+..+|++|
T Consensus 488 --------------------------------rg~~-----------------------~--~f~s~sp-~~G~pVLvaf 509 (881)
T PLN03000 488 --------------------------------RGEF-----------------------F--LFYSYAP-VAGGPLLIAL 509 (881)
T ss_pred --------------------------------Ccee-----------------------E--EEeCCCC-CCCCcEEEEE
Confidence 1100 0 0112221 1234589999
Q ss_pred ecchhhHHhhcCCHHHHHHHHHHHHHHHhCCC-CCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccC
Q psy7654 252 ISGASARFMETLSDEQIKTESMKAFRFFLGAN-YTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSN 330 (373)
Q Consensus 252 ~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~-~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~ 330 (373)
++|+.|..++.++++++++.++++|+++||.. ...++|..+.+++|..|||++|+|++..||+.. ..++.|.+|+++
T Consensus 510 v~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~--~~~d~LaePv~~ 587 (881)
T PLN03000 510 VAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASG--DDYDILAESVGD 587 (881)
T ss_pred ecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCch--HHHHHHhCcCCC
Confidence 99999999999999999999999999999842 134689999999999999999999999999754 467889999742
Q ss_pred CCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654 331 GQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372 (373)
Q Consensus 331 ~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~ 372 (373)
+|||||||||+..++||||||++||+|||.+|++.+.+
T Consensus 588 ----GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 588 ----GRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred ----CcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhh
Confidence 28999999999889999999999999999999987653
No 6
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=2.9e-37 Score=325.01 Aligned_cols=270 Identities=26% Similarity=0.445 Sum_probs=215.6
Q ss_pred CCchhhcchhhhhhhh--ccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC
Q psy7654 14 SDSWFETSAKRYNSFV--THEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG 91 (373)
Q Consensus 14 g~~~~~~S~~~~~~~~--~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G 91 (373)
+.+++.+|+..+..+. .++|.+.+ ++|||++|+++|++.+ .|++|++|++|++ ++++|.|++. +
T Consensus 326 ~~~~s~LSl~~~~~~~~~e~~G~~~~--i~GG~~~Li~aLA~~L----------~IrLnt~V~~I~~-~~dGVtV~t~-~ 391 (738)
T PLN02529 326 AGCLSDLSAAYWDQDDPYEMGGDHCF--LAGGNWRLINALCEGV----------PIFYGKTVDTIKY-GNDGVEVIAG-S 391 (738)
T ss_pred CCChHHhhhhHhhhccccccCCceEE--ECCcHHHHHHHHHhcC----------CEEcCCceeEEEE-cCCeEEEEEC-C
Confidence 5668899998876532 34455443 4899999999999876 3999999999999 7888998764 4
Q ss_pred cEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccc
Q psy7654 92 SQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDT 171 (373)
Q Consensus 92 ~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 171 (373)
+++.||+||||+|++++++..|.|.|+||+.+.++|+++.|+++.||++.|+++||+.+...+++++.....
T Consensus 392 ~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~-------- 463 (738)
T PLN02529 392 QVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNK-------- 463 (738)
T ss_pred EEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCC--------
Confidence 589999999999999998655889999999999999999999999999999999998764455554221110
Q ss_pred cccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEE
Q psy7654 172 AVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGW 251 (373)
Q Consensus 172 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~ 251 (373)
.+. |. ..++....++ ..+|++|
T Consensus 464 --------------------------------~g~------------------------~~-~~~~~~~~~g-gpvLvaf 485 (738)
T PLN02529 464 --------------------------------RGE------------------------FF-LFYGYHTVSG-GPALVAL 485 (738)
T ss_pred --------------------------------Cce------------------------EE-EEecCCCCCC-CCEEEEE
Confidence 010 00 0011111122 3589999
Q ss_pred ecchhhHHhhcCCHHHHHHHHHHHHHHHhCCC-CCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccC
Q psy7654 252 ISGASARFMETLSDEQIKTESMKAFRFFLGAN-YTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSN 330 (373)
Q Consensus 252 ~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~-~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~ 330 (373)
++|+.|..+..++++++++.++++|+++||.. ...++|..+.+++|.+|||++|+|++..||... ..+..+.+|..+
T Consensus 486 v~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~--~d~~~La~pv~g 563 (738)
T PLN02529 486 VAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSG--SDYDILAESVSG 563 (738)
T ss_pred ECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCch--hHHHHHhCCCCC
Confidence 99999999999999999999999999999841 235688999999999999999999998887643 235677777642
Q ss_pred CCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654 331 GQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD 370 (373)
Q Consensus 331 ~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~ 370 (373)
+||||||+|+..++||||||++||.|||.+|++.+
T Consensus 564 -----rL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l 598 (738)
T PLN02529 564 -----RLFFAGEATTRQYPATMHGAFLSGLREASRILHVA 598 (738)
T ss_pred -----CEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHH
Confidence 89999999999899999999999999999999865
No 7
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=6.4e-37 Score=308.71 Aligned_cols=264 Identities=30% Similarity=0.413 Sum_probs=214.1
Q ss_pred cCCchhhcchhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCc
Q psy7654 13 ASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS 92 (373)
Q Consensus 13 ~g~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~ 92 (373)
.+.+++++|++.+..+....|.+.+ +++||++|+++|++.+ +|++|++|++|.+ .+++|.|++.+|+
T Consensus 171 ~~~~~~~ls~~~~~~~~~~~g~~~~--~~~G~~~l~~~l~~~~----------~i~~~~~V~~i~~-~~~~v~v~~~~g~ 237 (435)
T PLN02268 171 FAADADTISLKSWDQEELLEGGHGL--MVRGYDPVINTLAKGL----------DIRLNHRVTKIVR-RYNGVKVTVEDGT 237 (435)
T ss_pred hCCChHhCchhhcCCccccCCCcee--ecCCHHHHHHHHhccC----------ceeCCCeeEEEEE-cCCcEEEEECCCc
Confidence 4677999999876443333454433 3799999999998754 5999999999999 7888999998888
Q ss_pred EEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCccccc
Q psy7654 93 QYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTA 172 (373)
Q Consensus 93 ~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (373)
++.||+||+|+|+++++...|.|.|+||..+.++++++.|+++.|+++.|+++||++. ..++.+... .
T Consensus 238 ~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~-~~~g~~~~~-~---------- 305 (435)
T PLN02268 238 TFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV-EFLGVVAPT-S---------- 305 (435)
T ss_pred EEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC-ceeeccCCC-C----------
Confidence 8999999999999999865578999999999999999999999999999999999863 222221100 0
Q ss_pred ccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEe
Q psy7654 173 VVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWI 252 (373)
Q Consensus 173 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~ 252 (373)
.+ ..|.. +... ..+..+|++|+
T Consensus 306 -------------------------------~~-----------------------~~~~~---~~~~-~~g~~~l~~~~ 327 (435)
T PLN02268 306 -------------------------------YG-----------------------CSYFL---NLHK-ATGHPVLVYMP 327 (435)
T ss_pred -------------------------------CC-----------------------ceEEE---eccc-CCCCCEEEEEe
Confidence 00 01111 1111 12346888999
Q ss_pred cchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCC
Q psy7654 253 SGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQ 332 (373)
Q Consensus 253 ~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~ 332 (373)
+|+.+..+..++++++++.++++|+++||. ...|..+.+++|..|||++|+|+++.||+.. ...+.|.+|++
T Consensus 328 ~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~---~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~--~~~~~l~~p~~--- 399 (435)
T PLN02268 328 AGRLARDIEKLSDEAAANFAMSQLKKMLPD---ATEPVQYLVSRWGSDPNSLGCYSYDLVGKPH--DLYERLRAPVD--- 399 (435)
T ss_pred ccHHHHHHHhCCHHHHHHHHHHHHHHHcCC---CCCccEEEecccCCCCCCCccCCCCCCCCCH--HHHHHHhCCCC---
Confidence 999999999999999999999999999984 4578999999999999999999999998642 35678899986
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD 370 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~ 370 (373)
|||||||+++..++||||||++||+|||++|++.|
T Consensus 400 ---~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 400 ---NLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred ---CeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 79999999999889999999999999999999865
No 8
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=7e-37 Score=323.52 Aligned_cols=273 Identities=27% Similarity=0.455 Sum_probs=217.4
Q ss_pred cCCchhhcchhhhhhh--hccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC
Q psy7654 13 ASDSWFETSAKRYNSF--VTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD 90 (373)
Q Consensus 13 ~g~~~~~~S~~~~~~~--~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~ 90 (373)
.|..++.+|+..+... ...+|.+.. ++|||++|+++|++.+. |++|++|++|.+ .+++|.|+ .+
T Consensus 405 ~gs~ls~LSl~~w~qd~~~e~~G~~~~--v~GG~~~Li~aLa~~L~----------I~ln~~V~~I~~-~~dgV~V~-~~ 470 (808)
T PLN02328 405 NASLMSNLSMAYWDQDDPYEMGGDHCF--IPGGNDTFVRELAKDLP----------IFYERTVESIRY-GVDGVIVY-AG 470 (808)
T ss_pred chhhHHHHHhhhhhccccccCCCeEEE--ECCcHHHHHHHHHhhCC----------cccCCeeEEEEE-cCCeEEEE-eC
Confidence 3566788887665331 123344433 48999999999999873 999999999999 78888884 56
Q ss_pred CcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCccc
Q psy7654 91 GSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKD 170 (373)
Q Consensus 91 G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 170 (373)
|+++.||+||||+|++++++..|.|.|+||..+.++|+++.|+++.||++.|+++||+.....++++..+...
T Consensus 471 G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~------- 543 (808)
T PLN02328 471 GQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSM------- 543 (808)
T ss_pred CeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCC-------
Confidence 7789999999999999998655889999999999999999999999999999999999765566665321100
Q ss_pred ccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEE
Q psy7654 171 TAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLG 250 (373)
Q Consensus 171 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~ 250 (373)
.|..+ + .+++.. ..+..+|++
T Consensus 544 ---------------------------------rG~~~----------------------l---f~s~s~-~~G~~vLva 564 (808)
T PLN02328 544 ---------------------------------RGEFF----------------------L---FYSYSS-VSGGPLLIA 564 (808)
T ss_pred ---------------------------------CceEE----------------------E---EecCCC-CCCCcEEEE
Confidence 11100 0 011111 122468999
Q ss_pred EecchhhHHhhcCCHHHHHHHHHHHHHHHhCCC-CCCCCCceEEeccCCCCCccccccccccccCCccccchHhhccccc
Q psy7654 251 WISGASARFMETLSDEQIKTESMKAFRFFLGAN-YTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLS 329 (373)
Q Consensus 251 ~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~-~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~ 329 (373)
|++|+.+..+..++++++++.++++|+++||.. ...++|..+.+++|..|||++|+|+++.+|+.. ..++.|.+|+.
T Consensus 565 fv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~--~~~~~LaePv~ 642 (808)
T PLN02328 565 LVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSG--DDYDILAESVG 642 (808)
T ss_pred EecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCch--hHHHHHhccCC
Confidence 999999999999999999999999999999842 124689999999999999999999999998753 35678888874
Q ss_pred CCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 330 NGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 330 ~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+ +|||||||+|+..++||||||++||+|||.+|++.++
T Consensus 643 ~----GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~ 680 (808)
T PLN02328 643 D----GRVFFAGEATNKQYPATMHGAFLSGMREAANILRVAR 680 (808)
T ss_pred C----CCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHh
Confidence 2 2899999999988899999999999999999998665
No 9
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=277.06 Aligned_cols=241 Identities=26% Similarity=0.403 Sum_probs=200.3
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCC
Q psy7654 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLP 120 (373)
Q Consensus 41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp 120 (373)
.|||++|++++++++. .+|.++++|.+|.+ .+++|.|++.+.+++.+|+||||+|+.++.+ |.|+|.++
T Consensus 205 ~GGmd~la~Afa~ql~--------~~I~~~~~V~rI~q-~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l~ 273 (450)
T COG1231 205 LGGMDQLAEAFAKQLG--------TRILLNEPVRRIDQ-DGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLP 273 (450)
T ss_pred CccHHHHHHHHHHHhh--------ceEEecCceeeEEE-cCCeEEEEeCCcceEEecEEEEecCHHHHhh--cccCCCCC
Confidence 5999999999999886 58999999999999 9999999998855899999999999999998 99999999
Q ss_pred HHHHHHHhcCCCcceeEEEEEcCCCCCCCCC-CceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCC
Q psy7654 121 PQKKNIIESLFLGTVDKVFVRFPQKWWPDDI-RGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWW 199 (373)
Q Consensus 121 ~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 199 (373)
..++++++.+.|++.+|+.+.|++|||++.. .+...+ .+.. +
T Consensus 274 ~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~-tD~~----~-------------------------------- 316 (450)
T COG1231 274 AEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESL-TDLG----L-------------------------------- 316 (450)
T ss_pred HHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEe-ecCC----c--------------------------------
Confidence 9999999999999999999999999999863 221111 1100 0
Q ss_pred CCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEE-EecchhhHHhhcCCHHHHHHHHHHHHHH
Q psy7654 200 PDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLG-WISGASARFMETLSDEQIKTESMKAFRF 278 (373)
Q Consensus 200 ~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~-~~~g~~a~~~~~ls~e~~~~~~~~~L~~ 278 (373)
....++.....++.++|.+ |..|+.|..+..++++++++.++..+++
T Consensus 317 --------------------------------~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~ 364 (450)
T COG1231 317 --------------------------------GFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAK 364 (450)
T ss_pred --------------------------------ceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhh
Confidence 0000111111234567777 7889999999999999999999999999
Q ss_pred HhCCCCCCCCCceE-EeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEec-cccCCCCcchhhHHH
Q psy7654 279 FLGANYTIPEPSRV-FHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAG-EASNEHQYGTVNGAV 356 (373)
Q Consensus 279 ~~g~~~~~~~~~~~-~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAG-d~~s~~~~g~veGA~ 356 (373)
+||. +...+.+. ...+|.+|||+.|+|..+.+|+.. +..+.|..|++ |||||| ||.+ .+.||||||+
T Consensus 365 ~~g~--~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~--~~~~~l~~p~g------RIh~AgtEhas-~~~Gw~eGAi 433 (450)
T COG1231 365 LFGD--EAADPFDYGASVDWSKDPWTLGGTAAYPPGQRT--KLYPTLPAPHG------RIHFAGTEHAS-EFGGWLEGAI 433 (450)
T ss_pred hCCh--hhccccccceeeecccCCcCCccccccCCcccc--cccccccCCCC------ceEEeeecccc-cccchhHHHH
Confidence 9995 44556655 899999999999988999999865 67888898887 999999 6655 4789999999
Q ss_pred HHHHHHHHHHHhhCCC
Q psy7654 357 ETGWREADRILKSDPA 372 (373)
Q Consensus 357 ~SG~~AA~~i~~~~~~ 372 (373)
+||.+||.+|+..++.
T Consensus 434 ~Sg~~AA~ei~~~l~s 449 (450)
T COG1231 434 RSGQRAAAEIHALLSS 449 (450)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999988764
No 10
>KOG0029|consensus
Probab=99.97 E-value=1.1e-30 Score=265.85 Aligned_cols=284 Identities=33% Similarity=0.509 Sum_probs=222.5
Q ss_pred chhhhhhhhhccCCchhhcchhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC
Q psy7654 2 DFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA 81 (373)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~ 81 (373)
.|++...+... ...++++|+........+++...-....+|+..++.+|++.+ .|+++++|.+|.+.++
T Consensus 177 ~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l----------~I~~~~~v~~i~~~~~ 245 (501)
T KOG0029|consen 177 QWHLVNLELTF-IAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGL----------DIHLNKRVRKIKYGDD 245 (501)
T ss_pred HHHHHHHHHHh-hccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCc----------ceeeceeeEEEEEecC
Confidence 35555555555 455777777776665544433111113899999999999855 6999999999999444
Q ss_pred CcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCC
Q psy7654 82 NGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHD 161 (373)
Q Consensus 82 ~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~ 161 (373)
+.+.++.++++.+.+|+||+|+|+++++...|.|.|+||..+.++|++++++.+.||++.|+..||+.+.+-++.+ +.+
T Consensus 246 ~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~-~~~ 324 (501)
T KOG0029|consen 246 GAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIV-PET 324 (501)
T ss_pred CceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEc-ccc
Confidence 4356666666669999999999999999877899999999999999999999999999999999998654444433 110
Q ss_pred CCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeec
Q psy7654 162 DKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241 (373)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~ 241 (373)
.. .++ ...+++....
T Consensus 325 ~~---------------------------------------~~~--------------------------~~~f~~~~~~ 339 (501)
T KOG0029|consen 325 SV---------------------------------------LRG--------------------------LFTFYDCKPV 339 (501)
T ss_pred cc---------------------------------------ccc--------------------------hhhhhhcCcc
Confidence 00 001 0011222222
Q ss_pred CCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccch
Q psy7654 242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASR 321 (373)
Q Consensus 242 ~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~ 321 (373)
.+ ..+|+.++.+..++.+..++++++++.++..|+++|+. .+.++|++..+.+|..|+++.|+|++..++... ..+
T Consensus 340 ~~-~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~-~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~--~~y 415 (501)
T KOG0029|consen 340 AG-HPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGS-EEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDG--DDY 415 (501)
T ss_pred CC-CCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhcc-CcCCCccceeeeeecccccCCccccccCCCCCh--hHH
Confidence 23 34888888899999999999999999999999999993 368899999999999999999999999888654 357
Q ss_pred HhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 322 HDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 322 ~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.+.+|+.+ ++||||++|+..++|+|+||+.||.+||..|++.+.
T Consensus 416 ~~l~~pi~~-----~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 416 DRLAEPIKN-----RVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred HHHhccccC-----cEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence 889999884 799999999999999999999999999999998664
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.96 E-value=4.7e-28 Score=239.15 Aligned_cols=241 Identities=30% Similarity=0.482 Sum_probs=193.0
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCC
Q psy7654 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLP 120 (373)
Q Consensus 41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp 120 (373)
.|++..+...+++.+. ++|++|++|++|+. ++++|.|++.+|++++||+||+|+|++.+.. |.+.|++|
T Consensus 208 ~g~~~~~~~~~~~~~g--------~~i~l~~~V~~I~~-~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~ 276 (450)
T PF01593_consen 208 MGGLSLALALAAEELG--------GEIRLNTPVTRIER-EDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLP 276 (450)
T ss_dssp TTTTHHHHHHHHHHHG--------GGEESSEEEEEEEE-ESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSH
T ss_pred ccchhHHHHHHHhhcC--------ceeecCCcceeccc-cccccccccccceEEecceeeecCchhhhhh--hhhccccc
Confidence 5777777777777554 68999999999999 7899999999999999999999999999987 77899999
Q ss_pred HHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCC
Q psy7654 121 PQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWP 200 (373)
Q Consensus 121 ~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 200 (373)
..+.+++++++|.++.||++.|+.+||+.+....++++.+...
T Consensus 277 ~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 319 (450)
T PF01593_consen 277 EDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFS------------------------------------- 319 (450)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTS-------------------------------------
T ss_pred ccccccccccccCcceeEEEeeecccccccccccceecccCcc-------------------------------------
Confidence 9999999999999999999999999999864344444322100
Q ss_pred CCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecC--CCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHH
Q psy7654 201 DDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTT--EDPLTFLGWISGASARFMETLSDEQIKTESMKAFRF 278 (373)
Q Consensus 201 ~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~--~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~ 278 (373)
+...+++....+ .+..+++.|+.++.+..+..++++++++.++++|++
T Consensus 320 ------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~ 369 (450)
T PF01593_consen 320 ------------------------------PIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRK 369 (450)
T ss_dssp ------------------------------SEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ------------------------------ccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhh
Confidence 000001111111 235678889999888889999999999999999999
Q ss_pred HhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHH
Q psy7654 279 FLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVET 358 (373)
Q Consensus 279 ~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~S 358 (373)
+++.. ..++|.++.+++|.+++|..|+|++..++... ...+.+.+|+. ++||||||+++..+.|+|+||+.|
T Consensus 370 ~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~l~~aG~~~~~~~~~~~~gA~~s 441 (450)
T PF01593_consen 370 ILPGA-SIPDPIDITVTRWSRDPYPRGSYSYFPPGQSS--QFRPALRTPID-----PGLYFAGDWTSPGYPGGIEGAILS 441 (450)
T ss_dssp HHTTG-GGGEESEEEEEECTTSTTTSSSCECHCTTHHH--HHHHHHHSCBT-----TTEEE-SGGGSSSSTTSHHHHHHH
T ss_pred ccccc-cccccccccccccccccccccccccccccccc--cccccccCCcc-----eEEEEeecccCCCCCCcHHHHHHH
Confidence 99941 35677899999999999999999998887641 25678888874 379999999998777999999999
Q ss_pred HHHHHHHHH
Q psy7654 359 GWREADRIL 367 (373)
Q Consensus 359 G~~AA~~i~ 367 (373)
|++||++|+
T Consensus 442 G~~aA~~il 450 (450)
T PF01593_consen 442 GRRAAEEIL 450 (450)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999986
No 12
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.93 E-value=3e-24 Score=214.05 Aligned_cols=263 Identities=17% Similarity=0.188 Sum_probs=179.2
Q ss_pred hhhhhhhhccCCchhhcchhhhhhhhc--c---CCcceeeecCCcHHHHHHH-HHHhCCCCCCCCCCceEEcCCceEEEE
Q psy7654 4 LGKAQNSLDASDSWFETSAKRYNSFVT--H---EGCEDTVWKKGGYGNVLKL-LLKQMPGQTPIDLGKKLLLNKEVTKIN 77 (373)
Q Consensus 4 ~~~~~~~~~~g~~~~~~S~~~~~~~~~--~---~g~~~~~~~~gG~~~L~~~-L~~~l~~~~~~~~G~~I~ln~~V~~I~ 77 (373)
++...+...++.+.+++|+..+...+. + .....+.+++||+++++.. |++.+. ++|++|++|++|++|.
T Consensus 150 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~-----~~g~~i~~~~~V~~i~ 224 (419)
T TIGR03467 150 LWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLD-----SRGGEVRLGTRVRSIE 224 (419)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHH-----HcCCEEEcCCeeeEEE
Confidence 344444455678899999998876542 1 1111233568999887755 888885 5678999999999999
Q ss_pred ecCCCcEEEEe-CCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeE
Q psy7654 78 WEDANGVLVTC-ADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNF 156 (373)
Q Consensus 78 ~~~~~~v~v~~-~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~ 156 (373)
. ++++|.+.. .+|+++.||+||+|+|++++.. + + |. ..+.++++++.|+++.++++.|++++|... +..++
T Consensus 225 ~-~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~--l-l-~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~ 296 (419)
T TIGR03467 225 A-NAGGIRALVLSGGETLPADAVVLAVPPRHAAS--L-L-PG--EDLGALLTALGYSPITTVHLRLDRAVRLPA-PMVGL 296 (419)
T ss_pred E-cCCcceEEEecCCccccCCEEEEcCCHHHHHH--h-C-CC--chHHHHHhhcCCcceEEEEEEeCCCcCCCC-Ceeee
Confidence 9 777765443 3667889999999999999987 3 1 22 146678899999999999999999998542 22222
Q ss_pred EecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeee
Q psy7654 157 FWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLY 236 (373)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~ 236 (373)
+ ... ..|...
T Consensus 297 ~---~~~-----------------------------------------------------------------~~~~~~-- 306 (419)
T TIGR03467 297 V---GGL-----------------------------------------------------------------AQWLFD-- 306 (419)
T ss_pred c---CCc-----------------------------------------------------------------eeEEEE--
Confidence 1 000 011111
Q ss_pred eeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCc
Q psy7654 237 GFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDK 316 (373)
Q Consensus 237 ~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~ 316 (373)
.....+..+.+..++.+ +..+..++++++++.++++|.++||.. ....+....+.+|... .|. +.+|...
T Consensus 307 -~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~-----~~~-~~~g~~~ 376 (419)
T TIGR03467 307 -RGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFPRV-AGAKPLWARVIKEKRA-----TFA-ATPGLNR 376 (419)
T ss_pred -CCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcCcc-ccCCccceEEEEccCC-----ccc-cCCcccc
Confidence 11111223455555554 455778899999999999999999852 2234666666777642 232 2355431
Q ss_pred cccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 317 MNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 317 ~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
..+.+..|.+ +||||||+++..++++||||++||.+||++|++
T Consensus 377 ---~~~~~~~~~~------~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 377 ---LRPGARTPWP------NLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred ---cCCCCCCCcC------CEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 2334455554 899999999987788999999999999999874
No 13
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.92 E-value=4.2e-24 Score=216.81 Aligned_cols=241 Identities=16% Similarity=0.273 Sum_probs=183.5
Q ss_pred cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCC
Q psy7654 40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPL 119 (373)
Q Consensus 40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~L 119 (373)
.+||+++|+++|++.+.. ++|++|++|++|++ ++++|.|++.+|+++.||+||+|+|++.+.. +.|.+
T Consensus 220 ~~gG~~~l~~~l~~~l~~-------~~i~~~~~V~~I~~-~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~ 287 (462)
T TIGR00562 220 LATGLETLPEEIEKRLKL-------TKVYKGTKVTKLSH-RGSNYTLELDNGVTVETDSVVVTAPHKAAAG----LLSEL 287 (462)
T ss_pred cchhHHHHHHHHHHHhcc-------CeEEcCCeEEEEEe-cCCcEEEEECCCcEEEcCEEEECCCHHHHHH----Hhccc
Confidence 489999999999998852 58999999999999 7888999888888899999999999999876 33668
Q ss_pred CHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCC
Q psy7654 120 PPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWW 199 (373)
Q Consensus 120 p~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 199 (373)
++.+.++++++.|.++.+|.+.|++++|+....+++++++.++... + +|
T Consensus 288 ~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~-~----------------~~-------------- 336 (462)
T TIGR00562 288 SNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFA-I----------------LG-------------- 336 (462)
T ss_pred CHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCc-e----------------EE--------------
Confidence 8888999999999999999999999999876567776643221100 0 00
Q ss_pred CCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHH
Q psy7654 200 PDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFF 279 (373)
Q Consensus 200 ~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~ 279 (373)
..|.+..++... +.+..+|++|+++..+..+..++++++++.++++|+++
T Consensus 337 -----------------------------~i~~s~~~p~~~-p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~ 386 (462)
T TIGR00562 337 -----------------------------CIFTSKLFPNRA-PPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKV 386 (462)
T ss_pred -----------------------------EEEEccccCCcC-CCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHH
Confidence 011111121111 22345788899887777788899999999999999999
Q ss_pred hCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHH
Q psy7654 280 LGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETG 359 (373)
Q Consensus 280 ~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG 359 (373)
+|. . ..|..+.+++|.. +++.+.+|+.. ..+.+.+-+.. ..++|++||+++.+. .|++|+.||
T Consensus 387 ~gi--~-~~p~~~~v~rw~~------a~P~~~~g~~~---~~~~i~~~l~~--~~~~l~l~G~~~~g~---~i~~~i~sg 449 (462)
T TIGR00562 387 LNI--N-NEPEMLCVTRWHR------AIPQYHVGHDQ---RLKEARELLES--AYPGVFLTGNSFEGV---GIPDCIDQG 449 (462)
T ss_pred hCC--C-CCCcEEEEeEccc------cCCCCCCChHH---HHHHHHHHHHh--hCCCEEEeccccCCC---cHHHHHHHH
Confidence 986 2 3488999999985 78888888642 23433321110 124899999998753 799999999
Q ss_pred HHHHHHHHhhC
Q psy7654 360 WREADRILKSD 370 (373)
Q Consensus 360 ~~AA~~i~~~~ 370 (373)
.+||++|++.+
T Consensus 450 ~~~a~~~~~~~ 460 (462)
T TIGR00562 450 KAAASDVLTFL 460 (462)
T ss_pred HHHHHHHHHhh
Confidence 99999998876
No 14
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.92 E-value=7.1e-24 Score=215.54 Aligned_cols=274 Identities=14% Similarity=0.153 Sum_probs=189.8
Q ss_pred hhhhhhhccCCchhhcchhhhhhh----hcc-----------------CCcceeeecCCcHHHHHHHHHHhCCCCCCCCC
Q psy7654 5 GKAQNSLDASDSWFETSAKRYNSF----VTH-----------------EGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDL 63 (373)
Q Consensus 5 ~~~~~~~~~g~~~~~~S~~~~~~~----~~~-----------------~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~ 63 (373)
+...+...++.+.+++|+...+.+ +.. .+...+..++|||++|+++|++.+..
T Consensus 165 ~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~------ 238 (463)
T PRK12416 165 IAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE------ 238 (463)
T ss_pred HHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc------
Confidence 333444556778999998652221 110 11111223589999999999999862
Q ss_pred CceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcC
Q psy7654 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFP 143 (373)
Q Consensus 64 G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~ 143 (373)
++|++|++|++|++ ++++|.|++.+|+++.||+||+|+|++++.. |.+.|.++ +.++++.+.++.+|++.|+
T Consensus 239 -~~i~~~~~V~~I~~-~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~----~~~~~~~~~~~~~v~l~~~ 310 (463)
T PRK12416 239 -TVVKKGAVTTAVSK-QGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNELN----EQFHTFKNSSLISIYLGFD 310 (463)
T ss_pred -ccEEcCCEEEEEEE-cCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcchh----HHHhcCCCCceEEEEEEec
Confidence 47999999999999 7888999888888899999999999999877 55666554 3567888999999999999
Q ss_pred CCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccc
Q psy7654 144 QKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDT 223 (373)
Q Consensus 144 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 223 (373)
+++|..+..+++++.+..+. + . .. +
T Consensus 311 ~~~~~~~~~g~G~l~~~~~~---~-----~---------~~--------------------~------------------ 335 (463)
T PRK12416 311 ILDEQLPADGTGFIVTENSD---L-----H---------CD--------------------A------------------ 335 (463)
T ss_pred hhhcCCCCCceEEEeeCCCC---C-----e---------EE--------------------E------------------
Confidence 88776555567776443221 0 0 00 0
Q ss_pred cccCCCcceeeeeeeeecCCCCceEEEEec--chhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCC
Q psy7654 224 AVVDGAPWIVDLYGFYLTTEDPLTFLGWIS--GASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301 (373)
Q Consensus 224 ~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~--g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp 301 (373)
..|.+..|... .++...++..|+. ++.+..+..++++++.+.++++|++++|. ..+|..+.+++|.+
T Consensus 336 -----~~~~s~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~---~~~p~~~~v~~W~~-- 404 (463)
T PRK12416 336 -----CTWTSRKWKHT-SGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGI---KGEPEVVEVTNWKD-- 404 (463)
T ss_pred -----EEeecCCCCCc-CCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCC---CCCceEEEEEEccc--
Confidence 11222222211 1233333344554 45677788999999999999999999996 35788999999985
Q ss_pred ccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD 370 (373)
Q Consensus 302 ~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~ 370 (373)
+++.+.+|+.. ..+.+.+.+.+ ..++|||||+++.+. +|+||+.||++||++|++.+
T Consensus 405 ----a~P~y~~~~~~---~~~~~~~~l~~--~~~~l~~aG~~~~g~---~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 405 ----LMPKYHLEHNQ---AVQSLQEKMMN--LYPNIYLAGASYYGV---GIGACIGNGKNTANEIIATL 461 (463)
T ss_pred ----cCCCcCcCHHH---HHHHHHHHHHh--hCCCeEEeccccccc---cHHHHHHHHHHHHHHHHHHh
Confidence 56666666532 22222222211 124899999998864 59999999999999999765
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=99.92 E-value=1.3e-23 Score=215.24 Aligned_cols=244 Identities=20% Similarity=0.296 Sum_probs=174.0
Q ss_pred cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeC--CC-cEEEcCEEEEcCCccccccccccc
Q psy7654 40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCA--DG-SQYSADKVLITVSLGVFKSDLITF 115 (373)
Q Consensus 40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~--~G-~~~~ad~VIvtiP~~~l~~~~i~f 115 (373)
.+|||++|+++|++.+.+ ++|++|++|++|++ .+++ |.|++. +| +++.||+||+|+|++++.. +.
T Consensus 234 ~~gG~~~L~~~la~~l~~-------~~i~l~~~V~~I~~-~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~--ll- 302 (496)
T PLN02576 234 FRGGLQTLPDALAKRLGK-------DKVKLNWKVLSLSK-NDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSE--ML- 302 (496)
T ss_pred ccchHHHHHHHHHHhhCc-------CcEEcCCEEEEEEE-CCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHH--Hh-
Confidence 489999999999998742 47999999999999 6665 666543 45 3689999999999999987 32
Q ss_pred CCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCC------CCCceeEEecCCCCCCCCcccccccCCCCccccccccccc
Q psy7654 116 VPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPD------DIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDK 189 (373)
Q Consensus 116 ~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 189 (373)
+.+++...++++++.|.++.+|.+.|++++|.. ...+++.+++..+... .+|
T Consensus 303 -~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~-----------------~lg---- 360 (496)
T PLN02576 303 -RPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVK-----------------TLG---- 360 (496)
T ss_pred -cccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCc-----------------eEE----
Confidence 235566788999999999999999999999976 2234444322110000 000
Q ss_pred eeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHH
Q psy7654 190 VFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIK 269 (373)
Q Consensus 190 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~ 269 (373)
..|.+..++... +++..+++.|+++..+..+..+++++++
T Consensus 361 ---------------------------------------~~~~s~~~p~~~-~~~~~~l~~~~~~~~~~~~~~~s~ee~~ 400 (496)
T PLN02576 361 ---------------------------------------TIYSSSLFPDRA-PEGRVLLLNYIGGSRNTGIASASEEELV 400 (496)
T ss_pred ---------------------------------------EEeecCcCCCCC-CCCCEEEEEEECCCCCcccccCCHHHHH
Confidence 011111221111 2334567789998888888899999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCc
Q psy7654 270 TESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQY 349 (373)
Q Consensus 270 ~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~ 349 (373)
+.++++|++++|.+ ..+.|..+.+++|.. +++.+.+|+.. ..+.+.+.+.+ ...++|+||||++.+.
T Consensus 401 ~~~~~~L~~~~g~~-~~~~p~~~~~~~w~~------a~P~~~~g~~~---~~~~~~~~l~~-~~~~~l~~aG~~~~g~-- 467 (496)
T PLN02576 401 EAVDRDLRKLLLKP-GAPPPKVVGVRVWPK------AIPQYLLGHLD---VLEAAEKMEKD-LGLPGLFLGGNYRGGV-- 467 (496)
T ss_pred HHHHHHHHHHhCCC-CCCCCcEEEEeEcCc------ccCCCCcCHHH---HHHHHHHHHHh-cCCCCEEEeccccCCc--
Confidence 99999999999952 234677788899985 67777777643 23334433321 1114899999999863
Q ss_pred chhhHHHHHHHHHHHHHHhhC
Q psy7654 350 GTVNGAVETGWREADRILKSD 370 (373)
Q Consensus 350 g~veGA~~SG~~AA~~i~~~~ 370 (373)
+|+||++||.+||++|++.+
T Consensus 468 -~i~~ai~sg~~aA~~i~~~~ 487 (496)
T PLN02576 468 -ALGKCVESGYEAADLVISYL 487 (496)
T ss_pred -cHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998754
No 16
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.90 E-value=1.3e-22 Score=205.71 Aligned_cols=267 Identities=16% Similarity=0.175 Sum_probs=179.5
Q ss_pred ccCCchhhcchhhhhhhhcc----CCcceeeecCCc-HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-E
Q psy7654 12 DASDSWFETSAKRYNSFVTH----EGCEDTVWKKGG-YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-L 85 (373)
Q Consensus 12 ~~g~~~~~~S~~~~~~~~~~----~g~~~~~~~~gG-~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~ 85 (373)
..+.+.+++|+.+++.++.. .+.....+..|| +++|+++|.+.+. ++|++|++|++|++|...+++++ .
T Consensus 175 ~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~-----~~g~~i~l~~~V~~I~~~~~~~v~~ 249 (453)
T TIGR02731 175 LNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYIT-----SRGGEVRLNSRLKEIVLNEDGSVKH 249 (453)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHH-----hcCCEEeCCCeeEEEEECCCCCEEE
Confidence 34667889999998754431 222222233444 6889999998886 56899999999999987334434 3
Q ss_pred EEeCCCc-----EEEcCEEEEcCCcccccccccccCCCCC-HHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEec
Q psy7654 86 VTCADGS-----QYSADKVLITVSLGVFKSDLITFVPPLP-PQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWT 159 (373)
Q Consensus 86 v~~~~G~-----~~~ad~VIvtiP~~~l~~~~i~f~p~Lp-~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~ 159 (373)
|.+.+|+ ++.+|+||+|+|++.+.+ + +.+.++ ....+.++++.++++.|+.+.|++++|... ++ ++.
T Consensus 250 v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~--l-L~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~--~~--~~~ 322 (453)
T TIGR02731 250 FVLADGEGQRRFEVTADAYVSAMPVDIFKL--L-LPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTVD--HL--LFS 322 (453)
T ss_pred EEEecCCCCceeEEECCEEEEcCCHHHHHh--h-CchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCCC--ce--eee
Confidence 5554544 789999999999998876 3 222222 234566778889999999999999987542 22 222
Q ss_pred CCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeee
Q psy7654 160 HDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFY 239 (373)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~ 239 (373)
..+. + + +.+ .|...++++.
T Consensus 323 ~~~~---~-------------------------------------~-------------~~~--------~~s~~~~~~~ 341 (453)
T TIGR02731 323 RSPL---L-------------------------------------S-------------VYA--------DMSETCKEYA 341 (453)
T ss_pred CCCc---c-------------------------------------e-------------eec--------chhhhChhhc
Confidence 1110 0 0 000 1111122222
Q ss_pred ecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCcccc
Q psy7654 240 LTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNA 319 (373)
Q Consensus 240 ~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~ 319 (373)
. ++ . .++++..+. +..+..+++|++++.++++|+++||.......+.++..++|..+||+. | ...||.. .
T Consensus 342 ~-~~-~-~l~~~~~~~-~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~-~~~pg~~---~ 411 (453)
T TIGR02731 342 D-PD-K-SMLELVFAP-AADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--Y-KTTPGRQ---Q 411 (453)
T ss_pred C-CC-C-eEEEEEecC-hhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--e-ccCCCCh---h
Confidence 1 22 3 455444433 345678999999999999999999841112257788888999999983 4 2446643 2
Q ss_pred chHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHH
Q psy7654 320 SRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRIL 367 (373)
Q Consensus 320 ~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~ 367 (373)
..+.+..|++ ||||||++++..++|+||||++||.+||++|.
T Consensus 412 ~~~~~~~p~~------~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 412 YRPHQKTPIP------NFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred hCccccCccC------CEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 4566777776 79999999998889999999999999999873
No 17
>PLN02612 phytoene desaturase
Probab=99.89 E-value=7.4e-22 Score=205.50 Aligned_cols=272 Identities=15% Similarity=0.165 Sum_probs=177.2
Q ss_pred hccCCchhhcchhhhhhhhc----cCCcceeeecCCcH-HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc--
Q psy7654 11 LDASDSWFETSAKRYNSFVT----HEGCEDTVWKKGGY-GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-- 83 (373)
Q Consensus 11 ~~~g~~~~~~S~~~~~~~~~----~~g~~~~~~~~gG~-~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-- 83 (373)
...+.+.+++|+..++.... ..+...+-+..|+. ++|.++|++.+. ++|++|++|++|++|.. ++++
T Consensus 269 ~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~-----~~G~~I~l~~~V~~I~~-~~~g~v 342 (567)
T PLN02612 269 ALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQ-----SLGGEVRLNSRIKKIEL-NDDGTV 342 (567)
T ss_pred HhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHH-----hcCCEEEeCCeeeEEEE-CCCCcE
Confidence 33466788999998886322 11222333456665 789999999886 67899999999999998 4444
Q ss_pred EEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCC
Q psy7654 84 VLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDK 163 (373)
Q Consensus 84 v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~ 163 (373)
+.|.+.+|+++.+|+||+|+|+.+++.+ +. ....+....+.++++.+.++.+|++.|++++|... ..+ ++..++.
T Consensus 343 ~~v~~~~G~~~~ad~VI~a~p~~~l~~L-l~-~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~-~~~--~~~~~~~ 417 (567)
T PLN02612 343 KHFLLTNGSVVEGDVYVSATPVDILKLL-LP-DQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTY-DHL--LFSRSPL 417 (567)
T ss_pred EEEEECCCcEEECCEEEECCCHHHHHHh-Cc-chhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCC-Cce--eecCCCC
Confidence 3466778888999999999999998862 11 11112234556677889999999999999998642 222 2111110
Q ss_pred CCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCC
Q psy7654 164 KNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243 (373)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~ 243 (373)
+ .++.|++ ..++.++ ++
T Consensus 418 ---~--------------------------------------------------~~~~d~S--------~~~~~~~--~~ 434 (567)
T PLN02612 418 ---L--------------------------------------------------SVYADMS--------TTCKEYY--DP 434 (567)
T ss_pred ---c--------------------------------------------------eeehhhh--------hcchhhc--CC
Confidence 0 0111211 1111211 22
Q ss_pred CCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCC--CceEEeccCCCCCccccccccccccCCccccch
Q psy7654 244 DPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE--PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASR 321 (373)
Q Consensus 244 ~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~--~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~ 321 (373)
+. .|+.++.+ .+..+..++++++++.++++|+++||.. ..++ ...+....+...|++ .|.. .||... ..
T Consensus 435 ~~-~ll~~~~~-~a~~~~~~sdeei~e~vl~~L~~lfp~~-~~~~~~~~~i~~~~~v~~P~a--~~~~-~pg~~~---~r 505 (567)
T PLN02612 435 NK-SMLELVFA-PAEEWISRSDEDIIDATMKELAKLFPDE-ISADQSKAKILKYHVVKTPRS--VYKT-VPNCEP---CR 505 (567)
T ss_pred CC-eEEEEEEE-cChhhhcCCHHHHHHHHHHHHHHHCCcc-cccccCCceEEEEEEeccCCc--eEEe-CCCCcc---cC
Confidence 23 34433333 4667888999999999999999999952 1122 122333344445553 2332 355432 23
Q ss_pred HhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 322 HDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 322 ~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.+..|++ +||||||+++..++|+||||++||++||++|++.++
T Consensus 506 p~~~tPi~------~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~ 549 (567)
T PLN02612 506 PLQRSPIE------GFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYE 549 (567)
T ss_pred ccccCccC------CEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 44566664 799999999988899999999999999999998765
No 18
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.89 E-value=2.4e-21 Score=195.57 Aligned_cols=269 Identities=16% Similarity=0.206 Sum_probs=181.9
Q ss_pred hhhhhhhccCCchhhcchhhhhhhhc----------------------cCCcceeeecCCcHHHHHHHHHHhCCCCCCCC
Q psy7654 5 GKAQNSLDASDSWFETSAKRYNSFVT----------------------HEGCEDTVWKKGGYGNVLKLLLKQMPGQTPID 62 (373)
Q Consensus 5 ~~~~~~~~~g~~~~~~S~~~~~~~~~----------------------~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~ 62 (373)
+.-.+...++.+.+++|+..++..+. ..+. ....++|||++|+++|++.+..
T Consensus 160 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~l~~~l~~~l~~----- 233 (451)
T PRK11883 160 IEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKG-VFGTLKGGLQSLIEALEEKLPA----- 233 (451)
T ss_pred HHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCC-ceEeeccHHHHHHHHHHHhCcC-----
Confidence 33444455677899999887542110 0121 1223599999999999998862
Q ss_pred CCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEc
Q psy7654 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRF 142 (373)
Q Consensus 63 ~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~ 142 (373)
.+|++|++|++|+. .+++|.|.+.+|+++.||+||+|+|++++.. +.+. +...++++++.|+++.||++.|
T Consensus 234 --~~i~~~~~V~~i~~-~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~--l~~~----~~~~~~~~~~~~~~~~~v~l~~ 304 (451)
T PRK11883 234 --GTIHKGTPVTKIDK-SGDGYEIVLSNGGEIEADAVIVAVPHPVLPS--LFVA----PPAFALFKTIPSTSVATVALAF 304 (451)
T ss_pred --CeEEeCCEEEEEEE-cCCeEEEEECCCCEEEcCEEEECCCHHHHHH--hccC----hhHHHHHhCCCCCceEEEEEEe
Confidence 17999999999998 7788988888888999999999999999987 4222 2346788999999999999999
Q ss_pred CCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCccccc
Q psy7654 143 PQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKD 222 (373)
Q Consensus 143 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 222 (373)
+++++... .+++++.+.++.. ++ . +
T Consensus 305 ~~~~~~~~-~~~~~~~~~~~~~-~~----------------~--------------------~----------------- 329 (451)
T PRK11883 305 PESATNLP-DGTGFLVARNSDY-TI----------------T--------------------A----------------- 329 (451)
T ss_pred ccccCCCC-CceEEEecCCCCC-cE----------------E--------------------E-----------------
Confidence 99863222 2344442211100 00 0 0
Q ss_pred ccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCc
Q psy7654 223 TAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKH 302 (373)
Q Consensus 223 ~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~ 302 (373)
..|.+..++... +.+..++..+.+...+..+..++++++++.++++|++++|. ..++..+.+++|..
T Consensus 330 ------~~~~s~~~~~~~-p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~---~~~~~~~~~~rw~~--- 396 (451)
T PRK11883 330 ------CTWTSKKWPHTT-PEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGI---TGDPEFTIVQRWKE--- 396 (451)
T ss_pred ------EEeEcCcCCCCC-CCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCC---CCCceEEEEeecCc---
Confidence 001111111111 22233444444444444466789999999999999999985 24677899999985
Q ss_pred cccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 303 FKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 303 ~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
+|+.+.+|+.. ..+.+..++.. .++|||||+++.+ +.|++|++||++||++|++
T Consensus 397 ---a~p~~~~~~~~---~~~~l~~~l~~---~~~l~~aG~~~~g---~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 397 ---AMPQYGVGHIE---RVAELRAGLPH---YPGLYVAGASFEG---VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred ---cCCCCCccHHH---HHHHHHHhhhh---CCCEEEECcccCC---ccHHHHHHHHHHHHHHHHh
Confidence 67777776532 23444444431 2389999999863 3699999999999999975
No 19
>PRK07233 hypothetical protein; Provisional
Probab=99.88 E-value=4.2e-21 Score=192.57 Aligned_cols=275 Identities=18% Similarity=0.180 Sum_probs=179.8
Q ss_pred hhhhhhhhccCCchhhcchhhhhhhhccCC-------cceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEE
Q psy7654 4 LGKAQNSLDASDSWFETSAKRYNSFVTHEG-------CEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKI 76 (373)
Q Consensus 4 ~~~~~~~~~~g~~~~~~S~~~~~~~~~~~g-------~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I 76 (373)
+++..+.-..|.+++++|+..++..+...+ .....+++||+++|+++|++.+. +.|++|++|++|++|
T Consensus 150 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~-----~~g~~v~~~~~V~~i 224 (434)
T PRK07233 150 FWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIE-----ARGGEIRLGTPVTSV 224 (434)
T ss_pred HHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHH-----hcCceEEeCCCeeEE
Confidence 444555566788999999998766443211 11233569999999999999987 567899999999999
Q ss_pred EecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeE
Q psy7654 77 NWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNF 156 (373)
Q Consensus 77 ~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~ 156 (373)
+. +++++.+...+++++++|+||+|+|+..+.. + .|.++....+.++++.|.+..++++.|+++.++ .+..
T Consensus 225 ~~-~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~--l--l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~ 295 (434)
T PRK07233 225 VI-DGGGVTGVEVDGEEEDFDAVISTAPPPILAR--L--VPDLPADVLARLRRIDYQGVVCMVLKLRRPLTD----YYWL 295 (434)
T ss_pred EE-cCCceEEEEeCCceEECCEEEECCCHHHHHh--h--cCCCcHHHHhhhcccCccceEEEEEEecCCCCC----Ccee
Confidence 98 6777765556777899999999999998876 2 256777777888999999999999999988643 1111
Q ss_pred EecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeee
Q psy7654 157 FWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLY 236 (373)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~ 236 (373)
.+...+. |+ .+. .+.+. +
T Consensus 296 ~~~~~~~--~~----------------~~~-------------------------------------------~~~s~-~ 313 (434)
T PRK07233 296 NINDPGA--PF----------------GGV-------------------------------------------IEHTN-L 313 (434)
T ss_pred eecCCCC--Cc----------------ceE-------------------------------------------EEecc-c
Confidence 1111000 00 000 00000 0
Q ss_pred eeeecCCCCceE--EEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccC
Q psy7654 237 GFYLTTEDPLTF--LGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTT 314 (373)
Q Consensus 237 ~~~~~~~~~~~L--~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~ 314 (373)
.....+++..++ ..|..+... +..++++++++.++++|+++++. .....+....+.+| +|+ ++.+.||.
T Consensus 314 ~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~~~p~-~~~~~~~~~~~~r~---~~a---~~~~~~g~ 384 (434)
T PRK07233 314 VPPERYGGEHLVYLPKYLPGDHP--LWQMSDEELLDRFLSYLRKMFPD-FDRDDVRAVRISRA---PYA---QPIYEPGY 384 (434)
T ss_pred CCccccCCceEEEEeeecCCCCh--hhcCCHHHHHHHHHHHHHHhCCC-CChhheeeEEEEEe---ccc---cccccCch
Confidence 000001122232 335444332 45788999999999999999983 22223445444444 454 33445553
Q ss_pred CccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654 315 DKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372 (373)
Q Consensus 315 ~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~ 372 (373)
.. ..+.+..|++ +||||||.+...+.++|+||++||.+||++|++.+..
T Consensus 385 ~~---~~~~~~~~~~------~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~~ 433 (434)
T PRK07233 385 LD---KIPPYDTPIE------GLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRRN 433 (434)
T ss_pred hh---cCCCcccCcC------CEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhcC
Confidence 21 2344555554 8999999544434468999999999999999987753
No 20
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.77 E-value=1.5e-17 Score=166.57 Aligned_cols=271 Identities=17% Similarity=0.192 Sum_probs=193.4
Q ss_pred hhhhhhhhccCCchhhcchhhhhh-hh---ccCCcc-----------------eeeecCCcHHHHHHHHHHhCCCCCCCC
Q psy7654 4 LGKAQNSLDASDSWFETSAKRYNS-FV---THEGCE-----------------DTVWKKGGYGNVLKLLLKQMPGQTPID 62 (373)
Q Consensus 4 ~~~~~~~~~~g~~~~~~S~~~~~~-~~---~~~g~~-----------------~~~~~~gG~~~L~~~L~~~l~~~~~~~ 62 (373)
++.=..+-+++.+++++|++.... .. ...|.. .+...+||+++|+++|++++.
T Consensus 153 ~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~------ 226 (444)
T COG1232 153 FIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLE------ 226 (444)
T ss_pred HHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhh------
Confidence 333444556688899999993222 11 111222 233459999999999999997
Q ss_pred CCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEc
Q psy7654 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRF 142 (373)
Q Consensus 63 ~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~ 142 (373)
.+|+++++|+.|.+ +..++.+.+.+|..++||.||+|+|++.+.. +.+. ....++++++.+.++..|.+.+
T Consensus 227 --~~i~~~~~V~~i~~-~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~----ll~~--~~~~~~~~~~~~~s~~~vv~~~ 297 (444)
T COG1232 227 --AKIRTGTEVTKIDK-KGAGKTIVDVGGEKITADGVISTAPLPELAR----LLGD--EAVSKAAKELQYTSVVTVVVGL 297 (444)
T ss_pred --hceeecceeeEEEE-cCCccEEEEcCCceEEcceEEEcCCHHHHHH----HcCC--cchhhhhhhccccceEEEEEEe
Confidence 46999999999999 6777888888888899999999999999876 2222 3346688999999999999999
Q ss_pred CCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCccccc
Q psy7654 143 PQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKD 222 (373)
Q Consensus 143 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 222 (373)
+++--....++++++.++++.. + .
T Consensus 298 ~~~~~~~~~~~~g~~iad~~~~--~----------------~-------------------------------------- 321 (444)
T COG1232 298 DEKDNPALPDGYGLLIADDDPY--I----------------L-------------------------------------- 321 (444)
T ss_pred ccccccCCCCceEEEEecCCCc--c----------------e--------------------------------------
Confidence 8862122235566665443320 0 0
Q ss_pred ccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCc
Q psy7654 223 TAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKH 302 (373)
Q Consensus 223 ~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~ 302 (373)
...|.+..++... +.+..++.+++....-+....++|||+++.++++|.++++. ..+|..+.+.+|..
T Consensus 322 -----a~~~~S~~~p~~~-p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~---~~~~~~~~v~r~~~--- 389 (444)
T COG1232 322 -----AITFHSNKWPHEA-PEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGI---NGDPVFVEVTRWKY--- 389 (444)
T ss_pred -----eEEEecccCCCCC-CCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCc---Ccchhheeeeeccc---
Confidence 1234444444332 32345777777776666677789999999999999999986 34566899999985
Q ss_pred cccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 303 FKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 303 ~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
+++++.+|+.. ....++..+. +.+++|+.+|.+..+. ++.+++.+|..||+++++
T Consensus 390 ---~~PqY~vG~~~---~~~~ir~~l~--~~y~gi~~~G~~~~g~---g~~d~I~~g~~aa~~l~~ 444 (444)
T COG1232 390 ---AMPQYEVGHLD---RLEPIRAALK--GAYPGIKSVGRYGEGV---GLPDCIAAGKEAAEQLLS 444 (444)
T ss_pred ---cCCccchhHHH---HHHHHHHhhc--cccCCeEEeccCCCCC---CchHHHHHHHHHHHHhhC
Confidence 89999999754 4555555554 1235899999988763 588899999999998863
No 21
>PLN02487 zeta-carotene desaturase
Probab=99.77 E-value=2.6e-17 Score=170.66 Aligned_cols=290 Identities=15% Similarity=0.107 Sum_probs=179.7
Q ss_pred hhhhhhhhccCCchhhcchhhhhhhhcc----CCcceeeecCCcHHH-HHHHHHHhCCCCCCCCCCceEEcCCceEEEEe
Q psy7654 4 LGKAQNSLDASDSWFETSAKRYNSFVTH----EGCEDTVWKKGGYGN-VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINW 78 (373)
Q Consensus 4 ~~~~~~~~~~g~~~~~~S~~~~~~~~~~----~g~~~~~~~~gG~~~-L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~ 78 (373)
++.-.+....+.+.+++|+..+..-+.+ ....++.+++||++. |++.+++.|. ++|++|+++++|++|..
T Consensus 249 l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~-----~~Gg~V~l~~~V~~I~~ 323 (569)
T PLN02487 249 MWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYIT-----DRGGRFHLRWGCREILY 323 (569)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHH-----HcCCEEEeCCceEEEEE
Confidence 3445556667889999999987753221 111334567999995 9999999998 78999999999999998
Q ss_pred cC-CCc----EEEEe---CCCcEEEcCEEEEcCCcccccccccccCCCCCH--HHHHHHhcCCCcceeEEEEEcCCCCCC
Q psy7654 79 ED-ANG----VLVTC---ADGSQYSADKVLITVSLGVFKSDLITFVPPLPP--QKKNIIESLFLGTVDKVFVRFPQKWWP 148 (373)
Q Consensus 79 ~~-~~~----v~v~~---~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~--~~~~ai~~~~~~~~~kv~l~~~~~~W~ 148 (373)
+. +++ +.|.+ .+++++.+|+||+|+|+..+++ + .|.... .....+.++.+.++..|+|.|+++.=
T Consensus 324 ~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~--L--lp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~- 398 (569)
T PLN02487 324 DKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKR--L--LPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVT- 398 (569)
T ss_pred ecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHH--h--CCchhhccHHHhHHhcCCCeeEEEEEEEeccccc-
Confidence 32 222 23444 2345689999999999998887 2 233322 13567788889999999999998641
Q ss_pred CCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCC
Q psy7654 149 DDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228 (373)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~ 228 (373)
.. ...+. +++ + .... .++..|+-.+.. -+.+.|.+
T Consensus 399 ~~-~~~~~--~r~-----l-------------~~~~--------g~~~~~~~~~~~------------~~f~~di~---- 433 (569)
T PLN02487 399 EM-QDLEL--SRQ-----L-------------RRAA--------GLDNLLYSADAD------------FSCFADLA---- 433 (569)
T ss_pred cc-ccccc--ccc-----c-------------cccc--------cccccccccCCC------------cceEeeee----
Confidence 11 11000 000 0 0001 111112100000 00111110
Q ss_pred CcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccc
Q psy7654 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYS 308 (373)
Q Consensus 229 ~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~ 308 (373)
..+ .-.++. ++....|..++.+. ..+..++++++++.++++|+++||. .....+....+.+..+ ..|.
T Consensus 434 --l~~-~~~~~~-~~~g~~l~~vis~a--~~~~~~~~~ei~~~~~~~L~~~~p~-~~~~~v~~~~vv~~~~-----at~~ 501 (569)
T PLN02487 434 --LTS-PEDYYK-EGEGSLIQAVLTPG--DPYMPLSNDKIVEKVHKQVLELFPS-SRGLEVTWSSVVKIGQ-----SLYR 501 (569)
T ss_pred --cCC-HHHHcc-cCCceEEEEEEcCC--ccccCCCHHHHHHHHHHHHHHhCcc-cccCceEEEEEEEccC-----ceec
Confidence 000 000111 11124566666653 3577899999999999999999985 2222455555555443 3343
Q ss_pred cccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654 309 IYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD 370 (373)
Q Consensus 309 ~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~ 370 (373)
. .||+.. .++....|+. |||+|||+++..|+.+||||++||.+||+.|++..
T Consensus 502 ~-~pg~~~---~RP~~~T~~~------nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 502 E-APGMDP---FRPDQKTPIS------NFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred c-CCCccc---cCCCCCCCCC------CEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 3 466432 2344455554 89999999999999999999999999999998753
No 22
>PRK07208 hypothetical protein; Provisional
Probab=99.77 E-value=2e-17 Score=168.90 Aligned_cols=268 Identities=18% Similarity=0.241 Sum_probs=173.2
Q ss_pred hhhccCCchhhcchhhhhhhhcc------------------------CC--cceeeecCCcHHHHHHHHHHhCCCCCCCC
Q psy7654 9 NSLDASDSWFETSAKRYNSFVTH------------------------EG--CEDTVWKKGGYGNVLKLLLKQMPGQTPID 62 (373)
Q Consensus 9 ~~~~~g~~~~~~S~~~~~~~~~~------------------------~g--~~~~~~~~gG~~~L~~~L~~~l~~~~~~~ 62 (373)
+.-.++.+.+++|+.+++.++.. .+ ...+.+++||+++|+++|++.+. +
T Consensus 156 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~-----~ 230 (479)
T PRK07208 156 TEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLE-----A 230 (479)
T ss_pred hhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHH-----H
Confidence 44455778999999875432210 00 01233568999999999999986 5
Q ss_pred CCceEEcCCceEEEEecCCCcE--EEEe--CCCc--EEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCccee
Q psy7654 63 LGKKLLLNKEVTKINWEDANGV--LVTC--ADGS--QYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVD 136 (373)
Q Consensus 63 ~G~~I~ln~~V~~I~~~~~~~v--~v~~--~~G~--~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~ 136 (373)
.|++|++|++|++|.. +++++ .++. .+|+ ++.||+||+|+|+..+.. + +.|.+|....++++++.|.++.
T Consensus 231 ~g~~i~~~~~V~~I~~-~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~--~-l~~~~~~~~~~~~~~l~~~~~~ 306 (479)
T PRK07208 231 LGGKVVLNAKVVGLHH-DGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA--A-LDPPPPPEVRAAAAGLRYRDFI 306 (479)
T ss_pred cCCEEEeCCEEEEEEE-cCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH--h-cCCCCCHHHHHHHhCCCcceeE
Confidence 6799999999999999 55553 2332 2353 588999999999998776 2 3466788888889999999999
Q ss_pred EEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCC
Q psy7654 137 KVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEK 216 (373)
Q Consensus 137 kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 216 (373)
+|.+.|+++.+... .+.++ +..+. ++ +.. .++
T Consensus 307 ~v~l~~~~~~~~~~--~~~~~-~~~~~--~~-----------------~r~----~~~---------------------- 338 (479)
T PRK07208 307 TVGLLVKELNLFPD--NWIYI-HDPDV--KV-----------------GRL----QNF---------------------- 338 (479)
T ss_pred EEEEEecCCCCCCC--ceEEe-cCCCC--cc-----------------cee----ccc----------------------
Confidence 99999998753321 12222 11010 00 000 000
Q ss_pred CcccccccccCCCcceeeeeeeeecCCCC-ceEE-EEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEe
Q psy7654 217 NPLFKDTAVVDGAPWIVDLYGFYLTTEDP-LTFL-GWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFH 294 (373)
Q Consensus 217 ~~~~~d~~~~~~~~w~~~~~~~~~~~~~~-~~L~-~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~ 294 (373)
..|... ..+.+. ..+. .+..... ..+..++++++++.++++|.++ |. ....++....+
T Consensus 339 ------------~~~~~~-----~~p~g~~~~l~~~~~~~~~-~~~~~~~deel~~~~~~~L~~l-~~-~~~~~~~~~~v 398 (479)
T PRK07208 339 ------------NNWSPY-----LVPDGRDTWLGLEYFCFEG-DDLWNMSDEDLIALAIQELARL-GL-IRPADVEDGFV 398 (479)
T ss_pred ------------ccCCcc-----cCCCCCceEEEEEEEccCC-CccccCCHHHHHHHHHHHHHHc-CC-CChhheeEEEE
Confidence 011110 012222 2222 2332222 2355789999999999999997 43 12456778888
Q ss_pred ccCCCCCccccccccccccCCccccchHhhc---ccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhh
Q psy7654 295 SSWGTNKHFKGSYSIYTLTTDKMNASRHDLE---APLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369 (373)
Q Consensus 295 ~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~---~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~ 369 (373)
.+|.. +|+.+.+|+.. ..+.+. ++. ++|++||++.... +.+||+|+.||.+||++|++.
T Consensus 399 ~r~~~------a~P~y~~~~~~---~~~~~~~~~~~~------~~l~laGr~~~~~-~~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 399 VRVPK------AYPVYDGTYER---NVEIIRDLLDHF------PNLHLVGRNGMHR-YNNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred EEecC------cccCCCchHHH---HHHHHHHHHHhc------CCceeeccccccc-cCChhHHHHHHHHHHHHHhcC
Confidence 88863 77777777643 233322 333 4899999986654 469999999999999999764
No 23
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.76 E-value=4.3e-17 Score=166.57 Aligned_cols=286 Identities=17% Similarity=0.117 Sum_probs=165.1
Q ss_pred hhhhhhhccCCchhhcchhhhhh---hhcc-CCcceeeecCCcHHH-HHHHHHHhCCCCCCCCCCceEEcCCceEEEEec
Q psy7654 5 GKAQNSLDASDSWFETSAKRYNS---FVTH-EGCEDTVWKKGGYGN-VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE 79 (373)
Q Consensus 5 ~~~~~~~~~g~~~~~~S~~~~~~---~~~~-~g~~~~~~~~gG~~~-L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~ 79 (373)
+.-.+....+.+.+++|++.+.. .+.. .....+.+++||++. +.+.|.+.|. +.|++|++|++|++|+.+
T Consensus 174 ~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~-----~~Gg~i~~~~~V~~I~~~ 248 (474)
T TIGR02732 174 WDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIE-----ARGGKFHLRHKVREIKYE 248 (474)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHH-----HCCCEEECCCEEEEEEEe
Confidence 34445555577899999998744 1111 111233356788776 5555888887 578999999999999983
Q ss_pred CC-Cc---E-EEEeCCC---cEEEcCEEEEcCCcccccccccccCCCCC--HHHHHHHhcCCCcceeEEEEEcCCCCCCC
Q psy7654 80 DA-NG---V-LVTCADG---SQYSADKVLITVSLGVFKSDLITFVPPLP--PQKKNIIESLFLGTVDKVFVRFPQKWWPD 149 (373)
Q Consensus 80 ~~-~~---v-~v~~~~G---~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp--~~~~~ai~~~~~~~~~kv~l~~~~~~W~~ 149 (373)
.+ ++ + .|.+.+| +++.+|+||+|+|++.+.++ .|.++ ......++++.+.++..|+|.|+++.=..
T Consensus 249 ~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L----l~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~ 324 (474)
T TIGR02732 249 KSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL----LPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTEL 324 (474)
T ss_pred cCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh----CChhhhcCHHHhhHhcCCCCCeEEEEEEeccccccc
Confidence 21 22 2 2334333 46899999999999988872 12221 12456788999999999999998753111
Q ss_pred CCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCC
Q psy7654 150 DIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGA 229 (373)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~ 229 (373)
. ... ..+. + +..+..+. .-+..+. .-+.+.|.+
T Consensus 325 ~-~~~------~~~~--l--------------~~~~~~~~-------~~~~~~~------------~~~~~~~~~----- 357 (474)
T TIGR02732 325 Q-DLA------KRKQ--L--------------KRAAGLDN-------LLYTADA------------DFSCFADLA----- 357 (474)
T ss_pred c-chh------hhhc--c--------------cccccccc-------cccccCc------------cceeeehhh-----
Confidence 0 000 0000 0 00000000 0000000 000111100
Q ss_pred cceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCcccccccc
Q psy7654 230 PWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSI 309 (373)
Q Consensus 230 ~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~ 309 (373)
..+ .-++.. ++...+|.+++... ..+..++++++++.++++|+++||. ....++.+..+.+..+ ..|.
T Consensus 358 -~~~-~~~~~~-~~~~~~l~~~~~~~--~~~~~~~~~~l~~~~~~~L~~~~p~-~~~~~~~~~~v~~~~~-----a~~~- 425 (474)
T TIGR02732 358 -LTS-PDDYYK-EGQGSLLQCVLTPG--DPWMPESNEEIAKRVDKQVRALFPS-SKNLKLTWSSVVKLAQ-----SLYR- 425 (474)
T ss_pred -ccC-HHHHhc-cCCCeEEEEEEeCh--hhhcCCCHHHHHHHHHHHHHHhCcc-ccCCceeEEEEEEecC-----ceec-
Confidence 000 000110 12222344555543 3466789999999999999999984 2223455544444443 2222
Q ss_pred ccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHH
Q psy7654 310 YTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRIL 367 (373)
Q Consensus 310 ~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~ 367 (373)
..||... .++....|. ++||+|||+++..++.+||||++||.+||+.|+
T Consensus 426 ~~pg~~~---~~P~~~t~~------~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 426 EAPGMDP---FRPDQKTPI------SNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred cCCCCcc---cCCCCCCCC------CCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 3466532 223333443 489999999999899999999999999999874
No 24
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.72 E-value=2.7e-17 Score=151.54 Aligned_cols=226 Identities=19% Similarity=0.217 Sum_probs=164.3
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC-cEEEcCEEEEcCCcccccccccccCCCC
Q psy7654 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG-SQYSADKVLITVSLGVFKSDLITFVPPL 119 (373)
Q Consensus 41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G-~~~~ad~VIvtiP~~~l~~~~i~f~p~L 119 (373)
.-||++|.+.|++.+ +|+++++|++|.+ .++.|++++++| +...+|.||+|+|.+++..++-...-.+
T Consensus 104 ~pgmsalak~LAtdL----------~V~~~~rVt~v~~-~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~ 172 (331)
T COG3380 104 EPGMSALAKFLATDL----------TVVLETRVTEVAR-TDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDL 172 (331)
T ss_pred CcchHHHHHHHhccc----------hhhhhhhhhhhee-cCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccc
Confidence 689999999999987 4999999999999 799999999665 5678999999999998876321112458
Q ss_pred CHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCC
Q psy7654 120 PPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWW 199 (373)
Q Consensus 120 p~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 199 (373)
|...++++..+.|.|+..+.+.|..+-= .+.+| +++ +.+ |
T Consensus 173 p~~l~~~~a~V~y~Pc~s~~lg~~q~l~-~P~~G-~~v--dg~---------------~--------------------- 212 (331)
T COG3380 173 PAALRAALADVVYAPCWSAVLGYPQPLD-RPWPG-NFV--DGH---------------P--------------------- 212 (331)
T ss_pred hHHHHHhhccceehhHHHHHhcCCccCC-CCCCC-ccc--CCC---------------e---------------------
Confidence 8889999999999999999999987631 11122 111 110 0
Q ss_pred CCCCCCCCccccCCCCCCcccccccccCCCcceeee-eeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHH
Q psy7654 200 PDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDL-YGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRF 278 (373)
Q Consensus 200 ~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~-~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~ 278 (373)
..|...- ....+.+.+. +++...+.+.++.....++|+.+..+....++
T Consensus 213 -----------------------------laWla~d~sK~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~ 262 (331)
T COG3380 213 -----------------------------LAWLARDASKKGHVPDGE-IWVVQASPDWSREHLDHPAEQVIVALRAAAQE 262 (331)
T ss_pred -----------------------------eeeeeccccCCCCCCcCc-eEEEEeCchHHHHhhcCCHHHHHHHHHHhhhh
Confidence 2343310 0001112233 67778888999998899999999888888999
Q ss_pred HhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHH
Q psy7654 279 FLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVET 358 (373)
Q Consensus 279 ~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~S 358 (373)
+.|. ..++|.....|+|.. +++.-..+. ......+.. +||+|||++++ |.||||.+|
T Consensus 263 ~~~~--~~~~p~~s~~H~WrY------A~P~~~~~~------~~L~ad~~~------~l~~cGDwc~G---grVEgA~LS 319 (331)
T COG3380 263 LDGD--RLPEPDWSDAHRWRY------AIPNDAVAG------PPLDADREL------PLYACGDWCAG---GRVEGAVLS 319 (331)
T ss_pred ccCC--CCCcchHHHhhcccc------ccccccccC------CccccCCCC------ceeeecccccC---cchhHHHhc
Confidence 8884 567888899999983 222222111 111112322 79999999987 789999999
Q ss_pred HHHHHHHHHhhC
Q psy7654 359 GWREADRILKSD 370 (373)
Q Consensus 359 G~~AA~~i~~~~ 370 (373)
|..||.+|++.|
T Consensus 320 GlAaA~~i~~~L 331 (331)
T COG3380 320 GLAAADHILNGL 331 (331)
T ss_pred cHHHHHHHHhcC
Confidence 999999999865
No 25
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.46 E-value=1e-11 Score=127.51 Aligned_cols=131 Identities=18% Similarity=0.134 Sum_probs=93.6
Q ss_pred hhhhhhhhccCCchhhcchhhhh---hhhcc-CCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEec
Q psy7654 4 LGKAQNSLDASDSWFETSAKRYN---SFVTH-EGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE 79 (373)
Q Consensus 4 ~~~~~~~~~~g~~~~~~S~~~~~---~~~~~-~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~ 79 (373)
++.+.+...++.+.++.++.... .+... .|. .+++||+++|+++|++.+. ++|++|++|++|++|..
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~---~~~~GG~~~l~~aL~~~~~-----~~G~~i~~~~~V~~I~~- 260 (492)
T TIGR02733 190 FLDLQLKLYSQEDADETAALYGATVLQMAQAPHGL---WHLHGSMQTLSDRLVEALK-----RDGGNLLTGQRVTAIHT- 260 (492)
T ss_pred HHHHHHhhhccCChhhhhHHHHHHHhhccccCCCc---eeecCcHHHHHHHHHHHHH-----hcCCEEeCCceEEEEEE-
Confidence 34445554567778888877642 22222 232 2358999999999999997 67899999999999998
Q ss_pred CCCcE-EEEeCCC-----cEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcce-eEEEEEcCCC
Q psy7654 80 DANGV-LVTCADG-----SQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTV-DKVFVRFPQK 145 (373)
Q Consensus 80 ~~~~v-~v~~~~G-----~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~-~kv~l~~~~~ 145 (373)
+++++ .|...+| +++.||+||+|+|+..+.. +...+.+++...+.++++.+.+. .++++.++..
T Consensus 261 ~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~--ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~ 331 (492)
T TIGR02733 261 KGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLE--LLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRA 331 (492)
T ss_pred eCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHH--hcCcccCCHHHHHHHhcCCCCCceEEEEEeeccc
Confidence 55542 2333232 5789999999999998876 32335677777778888888774 4888999873
No 26
>KOG1276|consensus
Probab=99.41 E-value=3.8e-12 Score=124.23 Aligned_cols=241 Identities=17% Similarity=0.205 Sum_probs=167.6
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC--CCc-EEEcCEEEEcCCcccccccccccCC
Q psy7654 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA--DGS-QYSADKVLITVSLGVFKSDLITFVP 117 (373)
Q Consensus 41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~--~G~-~~~ad~VIvtiP~~~l~~~~i~f~p 117 (373)
+||++.|+++|.+.|. ...+.|.++.++..+.....++|.+++. ++. .+..+++..|+|..++.. ..+
T Consensus 245 ~gGle~lP~a~~~~L~-----~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~----ll~ 315 (491)
T KOG1276|consen 245 KGGLETLPKALRKSLG-----EREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAK----LLR 315 (491)
T ss_pred hhhHhHhHHHHHHHhc-----ccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhh----hcc
Confidence 8999999999999997 4447889999999998745566776654 443 356777778999998877 336
Q ss_pred CCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCC
Q psy7654 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQK 197 (373)
Q Consensus 118 ~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 197 (373)
.+.+....++.++.|.++.-|.+.|..+--.-+..||+.+.+.+ ..++. -+||+
T Consensus 316 ~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~-~~~~~--------------~~LG~----------- 369 (491)
T KOG1276|consen 316 GLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSE-PKNGF--------------KTLGT----------- 369 (491)
T ss_pred ccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCC-CCCCC--------------ceeEE-----------
Confidence 66677788999999999999999999863233468999886532 21111 11332
Q ss_pred CCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHH--hhcCCHHHHHHHHHHH
Q psy7654 198 WWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARF--METLSDEQIKTESMKA 275 (373)
Q Consensus 198 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~--~~~ls~e~~~~~~~~~ 275 (373)
.|.+.+|+... + ...++..++|...+. ....|+|++++.+.++
T Consensus 370 --------------------------------ifdS~~Fp~~~-~--s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~a 414 (491)
T KOG1276|consen 370 --------------------------------IFDSMLFPDRS-P--SPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSA 414 (491)
T ss_pred --------------------------------EeecccCCCCC-C--CceEEEEecccccccCcCCCCCHHHHHHHHHHH
Confidence 12233444322 1 225555555544443 4457999999999999
Q ss_pred HHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHH
Q psy7654 276 FRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGA 355 (373)
Q Consensus 276 L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA 355 (373)
|++++|. ...|....++-|.+ |++.|.+|+.. ..+.+.+-+.. ....+|+.||.|+.+. .|..+
T Consensus 415 lq~~Lgi---~~~P~~~~v~l~~~------ciPqy~vGh~~---~le~a~~~l~~-~~g~~l~l~G~~y~Gv---~vgdc 478 (491)
T KOG1276|consen 415 LQKMLGI---SNKPVSVNVHLWKN------CIPQYTVGHDD---VLEAAKSMLTD-SPGLGLFLGGNHYGGV---SVGDC 478 (491)
T ss_pred HHHHhCC---CCCcccccceehhh------cccceecchHH---HHHHHHHHHHh-CCCCceEeeccccCCC---ChhHH
Confidence 9999997 23477777777876 89999999864 23333333321 0113799999999986 47777
Q ss_pred HHHHHHHHHHHH
Q psy7654 356 VETGWREADRIL 367 (373)
Q Consensus 356 ~~SG~~AA~~i~ 367 (373)
+.+|.++|.+++
T Consensus 479 I~sg~~~A~~v~ 490 (491)
T KOG1276|consen 479 IESGRKTAVEVI 490 (491)
T ss_pred HHhhHHHHHhhc
Confidence 788888887765
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.30 E-value=5.8e-10 Score=114.70 Aligned_cols=131 Identities=19% Similarity=0.192 Sum_probs=87.1
Q ss_pred hhhhhhhccCCchhhcchhhhhhhhc--cCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC
Q psy7654 5 GKAQNSLDASDSWFETSAKRYNSFVT--HEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN 82 (373)
Q Consensus 5 ~~~~~~~~~g~~~~~~S~~~~~~~~~--~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~ 82 (373)
+.+++.+.+..+..++++...+.... ..|. ..++.||+..|+++|.+.+. ++|++|+++++|++|.. +++
T Consensus 189 l~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~g--~~~~~gG~~~l~~~L~~~~~-----~~G~~i~~~~~V~~I~~-~~~ 260 (493)
T TIGR02730 189 IDIECFCWSVVPADQTPMINAGMVFSDRHYGG--INYPKGGVGQIAESLVKGLE-----KHGGQIRYRARVTKIIL-ENG 260 (493)
T ss_pred HHHHHHhccCCCcccchhhhHHHhhcccccce--EecCCChHHHHHHHHHHHHH-----HCCCEEEeCCeeeEEEe-cCC
Confidence 44455555555556665544333211 1222 23468999999999999997 78999999999999998 444
Q ss_pred c-EEEEeCCCcEEEcCEEEEcCCcc-cccccccccCCCCCHHHHHHHhcCCCc-ceeEEEEEcCCC
Q psy7654 83 G-VLVTCADGSQYSADKVLITVSLG-VFKSDLITFVPPLPPQKKNIIESLFLG-TVDKVFVRFPQK 145 (373)
Q Consensus 83 ~-v~v~~~~G~~~~ad~VIvtiP~~-~l~~~~i~f~p~Lp~~~~~ai~~~~~~-~~~kv~l~~~~~ 145 (373)
+ +.|.+.+|+++.+|.||+++.+. .+.++ +. ...++......++++.++ +..++++.++..
T Consensus 261 ~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~L-l~-~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~ 324 (493)
T TIGR02730 261 KAVGVKLADGEKIYAKRIVSNATRWDTFGKL-LK-AENLPKKEKNWQRNYVKSPSFLSLHLGVKAD 324 (493)
T ss_pred cEEEEEeCCCCEEEcCEEEECCChHHHHHHh-CC-ccccchhhHHHHhhccCCCceEEEEEEecCc
Confidence 4 56778888889999999988665 44331 21 122444433445666554 478899999874
No 28
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.24 E-value=2.9e-10 Score=116.96 Aligned_cols=125 Identities=21% Similarity=0.192 Sum_probs=84.0
Q ss_pred hhhhccCCchhhcchhhhh-hhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EE
Q psy7654 8 QNSLDASDSWFETSAKRYN-SFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VL 85 (373)
Q Consensus 8 ~~~~~~g~~~~~~S~~~~~-~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~ 85 (373)
.+.+.++ +.++.++...+ .+....+.. .+++||+++|+++|.+.+. ++|++|+++++|++|.. ++++ +.
T Consensus 184 ~~~~~g~-~p~~~~~~~~l~~~~~~~~g~--~~~~gG~~~l~~al~~~~~-----~~G~~i~~~~~V~~i~~-~~~~~~~ 254 (502)
T TIGR02734 184 HALFLGG-NPFRTPSIYALISALEREWGV--WFPRGGTGALVAAMAKLAE-----DLGGELRLNAEVIRIET-EGGRATA 254 (502)
T ss_pred cceeecc-CcccchHHHHHHHHHHhhceE--EEcCCCHHHHHHHHHHHHH-----HCCCEEEECCeEEEEEe-eCCEEEE
Confidence 3334444 44555543322 333333332 2468999999999999887 67899999999999998 5555 57
Q ss_pred EEeCCCcEEEcCEEEEcCCcccccccccccCCCC-CHHHHHHHhcCCCc-ceeEEEEEcC
Q psy7654 86 VTCADGSQYSADKVLITVSLGVFKSDLITFVPPL-PPQKKNIIESLFLG-TVDKVFVRFP 143 (373)
Q Consensus 86 v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~L-p~~~~~ai~~~~~~-~~~kv~l~~~ 143 (373)
|.+.+|+++.+|+||+|+++..+...++ .+.+ +....+.++++.++ +..++++.++
T Consensus 255 V~~~~g~~~~ad~VI~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~ 312 (502)
T TIGR02734 255 VHLADGERLDADAVVSNADLHHTYRRLL--PNHPRRRYPAARLSRKRPSPSLFVLYFGLL 312 (502)
T ss_pred EEECCCCEEECCEEEECCcHHHHHHHhc--CccccccccccccccCCcCCeeeEEEEeec
Confidence 8888888899999999999865543212 2222 32334455666644 5678888888
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.06 E-value=5e-05 Score=78.20 Aligned_cols=86 Identities=22% Similarity=0.280 Sum_probs=64.2
Q ss_pred Cchhhcc-hhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcE
Q psy7654 15 DSWFETS-AKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQ 93 (373)
Q Consensus 15 ~~~~~~S-~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~ 93 (373)
.+..+.+ +..++....+.++ ..+.+|||+.|+++|++.+. +.|++|+++++|++|..+.+.++.+++.+|+.
T Consensus 195 ~~p~~~~a~~~~~~~~~~~~G--~~~p~GG~~al~~aL~~~~~-----~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~ 267 (487)
T COG1233 195 APPSTPPALYLLLSHLGLSGG--VFYPRGGMGALVDALAELAR-----EHGGEIRTGAEVSQILVEGGKGVGVRTSDGEN 267 (487)
T ss_pred CCCCchhHHHHHHHHhcccCC--eeeeeCCHHHHHHHHHHHHH-----HcCCEEECCCceEEEEEeCCcceEEeccccce
Confidence 3444443 3333344444433 23468999999999999998 78999999999999998333457888888877
Q ss_pred EEcCEEEEcCCccc
Q psy7654 94 YSADKVLITVSLGV 107 (373)
Q Consensus 94 ~~ad~VIvtiP~~~ 107 (373)
+++|.||++.-+..
T Consensus 268 ~~ad~vv~~~~~~~ 281 (487)
T COG1233 268 IEADAVVSNADPAL 281 (487)
T ss_pred eccceeEecCchhh
Confidence 89999999998833
No 30
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=1.4e-05 Score=80.98 Aligned_cols=94 Identities=20% Similarity=0.172 Sum_probs=63.2
Q ss_pred hhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEE
Q psy7654 260 METLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLF 339 (373)
Q Consensus 260 ~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~f 339 (373)
+..-+++++.....+.+.+.++. .........+..= .-+.....||... +++....|+. |+++
T Consensus 370 ~~~~~~~~~~a~~e~~~~~~vP~--~~~a~~~~~~i~~------~q~~~~~~pgs~~---~rP~~~Tpv~------N~~l 432 (485)
T COG3349 370 FLFESDEAIVATFEKELYELVPS--LAEAKLKSSVLVN------QQSLYGLAPGSYH---YRPEQKTPIP------NLLL 432 (485)
T ss_pred ccccchhhHHHHHHHHhhhcCCc--hhcccccccceec------cccccccCCCccc---cCCCCCCCcc------chhh
Confidence 45567888999999999877763 1111111111110 1123334566542 4555666765 7999
Q ss_pred eccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654 340 AGEASNEHQYGTVNGAVETGWREADRILKSD 370 (373)
Q Consensus 340 AGd~~s~~~~g~veGA~~SG~~AA~~i~~~~ 370 (373)
|||++...+.++||||..||.+||+.|++.+
T Consensus 433 aGd~~~~~~~~smE~A~~sGl~AA~~v~~~~ 463 (485)
T COG3349 433 AGDYTKQPYLGSMEGATLSGLLAANAILDNL 463 (485)
T ss_pred ccceeecCCcCccchhhhhHHHHHHHHHHhh
Confidence 9999988788999999999999999998654
No 31
>KOG4254|consensus
Probab=97.66 E-value=0.0012 Score=65.98 Aligned_cols=83 Identities=23% Similarity=0.315 Sum_probs=62.9
Q ss_pred ecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCcc-cccccccccC
Q psy7654 39 WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSLG-VFKSDLITFV 116 (373)
Q Consensus 39 ~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~~-~l~~~~i~f~ 116 (373)
+++|||+.+..++++.+. +.|++|.+++.|.+|.. ++++ +-|..++|+++.+..||+...++ .+.++ +. .
T Consensus 258 Yp~GG~Gavs~aia~~~~-----~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kL-lp-~ 329 (561)
T KOG4254|consen 258 YPRGGMGAVSFAIAEGAK-----RAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKL-LP-G 329 (561)
T ss_pred CCCCChhHHHHHHHHHHH-----hccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCchHHHHHHh-CC-C
Confidence 469999999999999998 78999999999999998 4454 46888999999998888866555 55441 11 1
Q ss_pred CCCCHHHHHHHhcCC
Q psy7654 117 PPLPPQKKNIIESLF 131 (373)
Q Consensus 117 p~Lp~~~~~ai~~~~ 131 (373)
..||.+. .++++.
T Consensus 330 e~LPeef--~i~q~d 342 (561)
T KOG4254|consen 330 EALPEEF--VIQQLD 342 (561)
T ss_pred ccCCchh--hhhhcc
Confidence 2366653 555553
No 32
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.65 E-value=0.00028 Score=68.31 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=89.2
Q ss_pred cCCchhhcchhhhhhhh---ccCCccee------eecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc
Q psy7654 13 ASDSWFETSAKRYNSFV---THEGCEDT------VWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG 83 (373)
Q Consensus 13 ~g~~~~~~S~~~~~~~~---~~~g~~~~------~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~ 83 (373)
+..++.++|..-.+.+. ..-|-..+ -.+.||...-+++|++.+. ++|.++++|.+|++ -+++
T Consensus 179 wstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~~--------~~i~t~~~V~~l~r-lPdG 249 (447)
T COG2907 179 WSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADIR--------GRIETRTPVCRLRR-LPDG 249 (447)
T ss_pred hcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhcccc--------ceeecCCceeeeee-CCCc
Confidence 46677888776555433 32232221 1148999999999999887 68999999999999 8999
Q ss_pred EEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcC
Q psy7654 84 VLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFP 143 (373)
Q Consensus 84 v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~ 143 (373)
|.|...+|++.+||+||+|+-+.+.-. + .+.+-|++ ++.+..+.|.....|+.++.
T Consensus 250 v~l~~~~G~s~rFD~vViAth~dqAl~--m-L~e~sp~e-~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 250 VVLVNADGESRRFDAVVIATHPDQALA--L-LDEPSPEE-RQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred eEEecCCCCccccceeeeecChHHHHH--h-cCCCCHHH-HHHHHhhhhhhceeEEeecc
Confidence 999988899999999999999987655 2 22333444 56999999998888877755
No 33
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.43 E-value=0.00044 Score=70.34 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=51.7
Q ss_pred eeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-c-EEEEeCCCcEEEcCEEEEcCC
Q psy7654 37 TVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-G-VLVTCADGSQYSADKVLITVS 104 (373)
Q Consensus 37 ~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~-v~v~~~~G~~~~ad~VIvtiP 104 (373)
..++.||++.|+++|++.+. ..|+.++++++|++|.. +++ + +.|++.+|+++.|++||+..+
T Consensus 224 ~~yp~gG~g~L~qal~r~~a-----~~Gg~~~L~~~V~~I~~-~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 224 FIYPLYGLGGLPQAFSRLCA-----IYGGTYMLNTPVDEVVF-DENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred ceeeCCCHHHHHHHHHHHHH-----HcCcEEEcCCeEEEEEE-cCCCeEEEEEECCCcEEECCEEEECcc
Confidence 45678999999999998776 67899999999999998 543 3 568888999999999998433
No 34
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.30 E-value=0.0016 Score=64.68 Aligned_cols=90 Identities=22% Similarity=0.195 Sum_probs=57.0
Q ss_pred hhhhhhhccCCchhhcchhhhhhhh-ccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEE-EecCCC
Q psy7654 5 GKAQNSLDASDSWFETSAKRYNSFV-THEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKI-NWEDAN 82 (373)
Q Consensus 5 ~~~~~~~~~g~~~~~~S~~~~~~~~-~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I-~~~~~~ 82 (373)
.+..-+.++|-+. +|++..-+--. +.+++.-- ++||..+|.+.|.+.-. .++ +|++|++| .. .++
T Consensus 90 v~a~tRvNYgQ~~-~i~a~~G~vSla~a~~gl~s--V~GGN~qI~~~ll~~S~--------A~v-l~~~Vt~I~~~-~~~ 156 (368)
T PF07156_consen 90 VQAATRVNYGQNV-NIHAFAGLVSLAGATGGLWS--VEGGNWQIFEGLLEASG--------ANV-LNTTVTSITRR-SSD 156 (368)
T ss_pred HHhheEeeccccc-chhhhhhheeeeeccCCceE--ecCCHHHHHHHHHHHcc--------CcE-ecceeEEEEec-cCC
Confidence 3445566677653 34444332222 22333222 49999999999999754 689 99999999 44 333
Q ss_pred c---EEEEeCC--Cc-EEEcCEEEEcCCccc
Q psy7654 83 G---VLVTCAD--GS-QYSADKVLITVSLGV 107 (373)
Q Consensus 83 ~---v~v~~~~--G~-~~~ad~VIvtiP~~~ 107 (373)
+ +.|++.+ +. .-.+|.||+|+|+..
T Consensus 157 ~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 157 GYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred CceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 3 4555443 22 235799999999964
No 35
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.27 E-value=0.00076 Score=66.59 Aligned_cols=67 Identities=16% Similarity=0.320 Sum_probs=59.8
Q ss_pred CCcceeeecC-CcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCC
Q psy7654 32 EGCEDTVWKK-GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVS 104 (373)
Q Consensus 32 ~g~~~~~~~~-gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP 104 (373)
+++.-++|+. ..-++|+++|...++ +.|++|+++++|.+|++ ++.+..|++.+|+++.||.+|+|+-
T Consensus 97 e~~~Gr~Fp~sdkA~~Iv~~ll~~~~-----~~gV~i~~~~~v~~v~~-~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 97 EEDLGRMFPDSDKASPIVDALLKELE-----ALGVTIRTRSRVSSVEK-DDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred EccCceecCCccchHHHHHHHHHHHH-----HcCcEEEecceEEeEEe-cCceEEEEcCCCCEEEccEEEEecC
Confidence 4555567776 899999999999998 78999999999999999 7788999999998999999999986
No 36
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.44 E-value=0.25 Score=48.88 Aligned_cols=57 Identities=21% Similarity=0.141 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..|.+.|.+.+. +.|+..+++++|++|+. +++++.|++++|+++.+|.||.|--...
T Consensus 111 ~~l~~~L~~~~~-----~~~~~~~~~~~v~~i~~-~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 111 WLLNRALEARVA-----ELPNITRFGDEAESVRP-REDEVTVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHHHh-----cCCCcEEECCeeEEEEE-cCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence 567777777765 34444589999999998 7888999888888899999999988764
No 37
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.23 E-value=0.51 Score=46.33 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
...|.+.|.+.+. +.| .+|+++++|++|.. +++++.|++.+|+++.+|.||.|-....
T Consensus 105 r~~l~~~L~~~~~-----~~~~~~v~~~~~v~~i~~-~~~~~~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 105 NRVLQQALWERLQ-----EYPNVTLLCPARVVELPR-HSDHVELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred cHHHHHHHHHHHH-----hCCCcEEecCCeEEEEEe-cCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence 3567777877775 455 78999999999998 7788889888898899999998877653
No 38
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.11 E-value=0.54 Score=46.66 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..|.+.|.+.+. +.|.+|+.+++|++|+. +++++.|++.+|+++.+|.||.|.-...
T Consensus 113 ~~l~~~L~~~~~-----~~gv~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 113 DLLVDRLWAALH-----AAGVQLHCPARVVALEQ-DADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHH-----hCCCEEEcCCeEEEEEe-cCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 567777777775 45789999999999998 7888888888888899999999987764
No 39
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.10 E-value=0.0072 Score=58.25 Aligned_cols=63 Identities=25% Similarity=0.368 Sum_probs=52.2
Q ss_pred ecCCc---HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCCCcEEEcCEEEEcCCcccc
Q psy7654 39 WKKGG---YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 39 ~~~gG---~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
...+| ..+++++|.+.+. +.|++|+.+++|++|.. ++++|. |.+.+|+ +.+|+||+|.-++.-
T Consensus 138 ~~~~g~i~~~~l~~~l~~~~~-----~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 138 FPEGGVIDPRRLIQALAAEAQ-----RAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp ETTEEEEEHHHHHHHHHHHHH-----HTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred ccccccccccchhhhhHHHHH-----Hhhhhccccccccchhh-cccccccccccccc-cccceeEecccccce
Confidence 34677 8999999999886 67899999999999999 888888 9999996 999999999987643
No 40
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.78 E-value=0.025 Score=50.46 Aligned_cols=53 Identities=25% Similarity=0.386 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
+.+-.+.+++.. |.+|+++++|++|++ .+++|.|++.+++++.||+||+|+-.
T Consensus 84 v~~yl~~~~~~~--------~l~i~~~~~V~~v~~-~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 84 VLDYLQEYAERF--------GLEIRFNTRVESVRR-DGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHT--------TGGEETS--EEEEEE-ETTTEEEEETTS-EEEEEEEEE---S
T ss_pred HHHHHHHHHhhc--------CcccccCCEEEEEEE-eccEEEEEEEecceeeeeeEEEeeec
Confidence 334445555544 367999999999999 77789999999888999999999985
No 41
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.69 E-value=0.038 Score=54.80 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
..++.+|++.+. + |++|+.+++|++|+. ++++|.|.+.+|.++.+|+||+|.-.+..
T Consensus 135 ~~~~~~l~~~~~-----~-G~~i~~~~~V~~i~~-~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 135 PQLCRALLAHAG-----I-RLTLHFNTEITSLER-DGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred HHHHHHHHhccC-----C-CcEEEeCCEEEEEEE-cCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 788899988876 6 899999999999998 77789999988877999999999888754
No 42
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=95.49 E-value=0.018 Score=58.13 Aligned_cols=64 Identities=25% Similarity=0.427 Sum_probs=44.8
Q ss_pred eeec-CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 37 TVWK-KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 37 ~~~~-~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
.+|+ ..--.++++.|.+.+. ++|++|+++++|.+|.. .+++ +.|.+++++++.||+||+|+--.
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~-----~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELK-----RLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHH-----HHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEEEE----S
T ss_pred EECCCCCcHHHHHHHHHHHHH-----HcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEEEEecCCC
Confidence 3444 3458899999999887 78899999999999998 5666 88888777799999999997643
No 43
>PRK10015 oxidoreductase; Provisional
Probab=95.25 E-value=2.5 Score=42.87 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=33.9
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
+.|++|+.+++|+.|.. +++++.....++.++.||.||.|.-..
T Consensus 120 ~~Gv~i~~~~~V~~i~~-~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 120 QAGAQFIPGVRVDALVR-EGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred HcCCEEECCcEEEEEEE-eCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 45789999999999987 566665333344579999999997765
No 44
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.23 E-value=3.4 Score=40.86 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCCCCCCC-CceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDL-GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~-G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..+-+.|.+.+. +. |.+++.+++|++|.. .++++.|++.+|+++++|.||.|.-...
T Consensus 112 ~~l~~~L~~~~~-----~~~gv~i~~~~~v~~i~~-~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 112 RVLQLALWQALE-----AHPNVTLRCPASLQALQR-DDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHHH-----cCCCcEEEcCCeeEEEEE-cCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 345566666554 23 688999999999998 7778888888888899999999988764
No 45
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.08 E-value=3.8 Score=40.69 Aligned_cols=60 Identities=27% Similarity=0.312 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEeC-CCcEEEcCEEEEcCCcccc
Q psy7654 43 GYGNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTCA-DGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 43 G~~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~~-~G~~~~ad~VIvtiP~~~l 108 (373)
....|.+.|.+.+. +.+ .+++.++.|+.|+. +++.+.++.. +|+++.||.||-|=-.+..
T Consensus 102 ~~~~l~~~L~~~~~-----~~~~v~~~~~~~v~~~~~-~~~~v~v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 102 PRSDLLNALLEAAR-----ALPNVTLRFGAEVEAVEQ-DGDGVTVTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred EhHHHHHHHHHHHh-----hCCCcEEEcCceEEEEEE-cCCceEEEEcCCCcEEecCEEEECCCCchH
Confidence 46788888888886 344 69999999999999 7888888887 8989999999998876654
No 46
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.90 E-value=4.1 Score=40.53 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC-C--cEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD-G--SQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~-G--~~~~ad~VIvtiP~~~ 107 (373)
..|.+.|.+.+.. .-|.+++++++|++|+. +++++.|+..+ + .+++||.||.|--...
T Consensus 121 ~~l~~~L~~~~~~----~~~v~i~~~~~v~~v~~-~~~~~~v~~~~~~~~~~i~adlvIgADG~~S 181 (415)
T PRK07364 121 QVLLEALQEFLQS----CPNITWLCPAEVVSVEY-QQDAATVTLEIEGKQQTLQSKLVVAADGARS 181 (415)
T ss_pred HHHHHHHHHHHhc----CCCcEEEcCCeeEEEEe-cCCeeEEEEccCCcceEEeeeEEEEeCCCCc
Confidence 4577777777652 12478999999999988 77778777653 2 3689999999887654
No 47
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.46 E-value=0.08 Score=53.55 Aligned_cols=60 Identities=23% Similarity=0.275 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEEEEeCCCcE-EEcCEEEEcCCccccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVLVTCADGSQ-YSADKVLITVSLGVFK 109 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~v~~~~G~~-~~ad~VIvtiP~~~l~ 109 (373)
+..+..+|++.+. ..|++|+||++|+.|++ .++ .+.+.+.+|++ ++|+.||.+.......
T Consensus 152 ~~~~t~~l~e~a~-----~~g~~i~ln~eV~~i~~-~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 152 PGELTRALAEEAQ-----ANGVELRLNTEVTGIEK-QSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHH-----HcCCEEEecCeeeEEEE-eCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 6678888888876 45899999999999999 566 46677888866 9999999999987654
No 48
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=94.41 E-value=0.086 Score=53.11 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=50.6
Q ss_pred CcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 42 GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 42 gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
...-.+++.|.+.|. .+|++|++++.|..|.. .++. ..|.+.+|+++.+|+||+|+-.+-
T Consensus 170 D~l~~vvkni~~~l~-----~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 170 DILPKVVKNIREYLE-----SLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred cchHHHHHHHHHHHH-----hcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcch
Confidence 346778888889998 78999999999999999 5554 467788999999999999998763
No 49
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.11 E-value=0.24 Score=42.81 Aligned_cols=41 Identities=32% Similarity=0.456 Sum_probs=34.2
Q ss_pred CceEE-cCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 64 GKKLL-LNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 64 G~~I~-ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
|.+|. ...+|+.|+. .++++.|.+.+|..+.+|+||+|+-.
T Consensus 114 ~i~v~~~~~~V~~i~~-~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRR-DDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEE-cCCcEEEEECCCCEEEeCEEEECCCC
Confidence 34444 6789999999 78889999999999999999999853
No 50
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=94.10 E-value=0.15 Score=50.82 Aligned_cols=57 Identities=28% Similarity=0.429 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
...+.++|.+.+. +.|++|+++++|.+|.. .++++.|.+.+| ++.+|.||+|.....
T Consensus 148 ~~~l~~aL~~~~~-----~~Gv~i~~~~~V~~i~~-~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQ-----ARGGEIRLGAEVTALDE-HANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHH-----hCCCEEEcCCEEEEEEe-cCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 4788999988886 66899999999999998 677788888777 799999999998864
No 51
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.92 E-value=0.19 Score=50.09 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=50.2
Q ss_pred eeec-CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC-cEEEcCEEEEcCCccc
Q psy7654 37 TVWK-KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG-SQYSADKVLITVSLGV 107 (373)
Q Consensus 37 ~~~~-~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G-~~~~ad~VIvtiP~~~ 107 (373)
.+|+ ..--+.++++|...+. ++|++|+++++|++|+ ++++.|.+.++ .++.||+||+|+--..
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~-----~~gV~i~~~~~V~~i~---~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLA-----EQGVQFHTRHRWIGWQ---GGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHH-----HCCCEEEeCCEEEEEe---CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 4565 6778999999999887 7899999999999993 23577776543 4689999999998643
No 52
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=93.50 E-value=0.19 Score=52.07 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCCCCCCCC----CC--ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 44 YGNVLKLLLKQMPGQTPID----LG--KKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~----~G--~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
...|..+|++.+. + .| ++|+++++|++|+...++.|.|++.+| ++.||+||+|.-.+..
T Consensus 210 ~~~L~~al~~~a~-----~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHAR-----RDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHH-----hhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 4788899988775 4 56 678999999999983355688888887 7999999999987754
No 53
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.28 E-value=0.2 Score=49.31 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
..+.+.|.+.+. ++|++++.+++|++|.. +++++.|.+.++ ++.+|+||+|+-..
T Consensus 145 ~~~~~~l~~~~~-----~~g~~~~~~~~V~~i~~-~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 145 EKALRALQELAE-----AHGATVRDGTKVVEIEP-TELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHH-----HcCCEEECCCeEEEEEe-cCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 467777776665 56799999999999998 677788887776 79999999998875
No 54
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=93.22 E-value=0.23 Score=47.76 Aligned_cols=58 Identities=24% Similarity=0.317 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
..+++..|++.+. +.|++|+.+++|++|+. .+++| .|.+.+| ++.||+||+|+-...-
T Consensus 136 p~~l~~~l~~~~~-----~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 136 PRALLKALEKALE-----KLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred hHHHHHHHHHHHH-----HcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 4888888888776 67899999999999998 66665 4677777 8999999999988654
No 55
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.02 E-value=0.31 Score=48.87 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
..|.+.|.+.++. ..++++++|++|+. ++++|.|+..+|+++++|.||.|--....
T Consensus 105 ~~l~~~L~~~~~~-------~~v~~~~~v~~i~~-~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 105 ADFLDALLKHLPE-------GIASFGKRATQIEE-QAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHHHhCCC-------ceEEcCCEEEEEEe-cCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 4678888888753 56899999999998 78889999889989999999999877643
No 56
>PRK06847 hypothetical protein; Provisional
Probab=92.90 E-value=0.26 Score=48.37 Aligned_cols=57 Identities=28% Similarity=0.299 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..|.+.|.+.+. +.|++|+++++|++|+. +++++.|.+.+|+++.+|.||.|.-...
T Consensus 107 ~~l~~~L~~~~~-----~~gv~v~~~~~v~~i~~-~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 107 PALARILADAAR-----AAGADVRLGTTVTAIEQ-DDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHH-----HhCCEEEeCCEEEEEEE-cCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 456666766664 45689999999999998 7788888888888999999999998764
No 57
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=92.88 E-value=0.32 Score=48.78 Aligned_cols=59 Identities=34% Similarity=0.508 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 42 GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 42 gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
.....+.+.|.+.+. +.|++|+++++|++|.. .++.+.|.+ +++++.+|+||+|+....
T Consensus 102 ~~a~~v~~~L~~~l~-----~~gv~i~~~~~V~~i~~-~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 102 DSAADVLDALLNELK-----ELGVEILTNSKVKSIKK-DDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred CCHHHHHHHHHHHHH-----HCCCEEEeCCEEEEEEe-cCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 456889999988886 56799999999999988 677777777 455899999999998754
No 58
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=92.88 E-value=0.28 Score=48.68 Aligned_cols=56 Identities=27% Similarity=0.265 Sum_probs=47.5
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
..|.+.|.+.+. +.|++|+++++|++|+. +++++.|++.+|+++.+|.||.|.-..
T Consensus 111 ~~l~~~L~~~~~-----~~gv~v~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 111 RVLINALRKRAE-----ALGIDLREATSVTDFET-RDEGVTVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHH-----hCCCEEEcCCEEEEEEE-cCCEEEEEECCCCEEEeCEEEEcCCCC
Confidence 567777877775 45789999999999998 788888888888889999999998765
No 59
>PRK07236 hypothetical protein; Provisional
Probab=92.76 E-value=0.41 Score=47.50 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 43 GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 43 G~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
+...|.+.|.+.+.. .+|+++++|++|+. ++++|.|+..+|+++.+|.||.|=-...
T Consensus 98 ~~~~l~~~L~~~~~~-------~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 98 SWNVLYRALRAAFPA-------ERYHLGETLVGFEQ-DGDRVTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred CHHHHHHHHHHhCCC-------cEEEcCCEEEEEEe-cCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 577888888887753 57999999999998 7888999999999999999999966654
No 60
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=92.74 E-value=0.36 Score=48.17 Aligned_cols=58 Identities=26% Similarity=0.268 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
..+.+.|.+.+. +.|.+|+.+++|++|+. ++++|.|++.+|+++.+|.||.|--.+..
T Consensus 112 ~~l~~~L~~~~~-----~~gv~v~~~~~v~~i~~-~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 112 RVVQDALLERLH-----DSDIGLLANARLEQMRR-SGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHHHh-----cCCCEEEcCCEEEEEEE-cCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 467778877776 45789999999999998 78889998888888999999999887643
No 61
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=92.60 E-value=0.28 Score=48.22 Aligned_cols=56 Identities=38% Similarity=0.531 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..++.++.+.+. +.|++|+++++|++|.. .++++.|.+.+| ++.+|+||+|+....
T Consensus 149 ~~~~~~~~~~~~-----~~gv~i~~~~~v~~i~~-~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 149 ELAIKAHLRLAR-----EAGAELLFNEPVTAIEA-DGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHH-----HCCCEEECCCEEEEEEe-eCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 556666666554 56799999999999998 677888888887 799999999998764
No 62
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=92.52 E-value=0.27 Score=50.25 Aligned_cols=55 Identities=25% Similarity=0.331 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
-..++.+|++.+. ++|++|+.+++|++|+. ++.+.|.+.+| ++.||+||+|+-..
T Consensus 182 P~~l~~~L~~~a~-----~~Gv~i~~~t~V~~i~~--~~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVAL-----ELGVEIHENTPMTGLEE--GQPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHH-----HcCCEEECCCeEEEEee--CCceEEEeCCc-EEECCEEEEccccc
Confidence 4577888887765 67899999999999986 34577888777 79999999998654
No 63
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=92.50 E-value=0.32 Score=48.56 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
...+.++|++.+. +.|++|+.+++|++|.. +++++ .|++.++ ++.+|+||+|+....
T Consensus 200 p~~~~~~l~~~~~-----~~G~~i~~~~~V~~i~~-~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAE-----QLGVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHH-----HCCCEEEcCCEEEEEEe-cCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 4578888887775 67899999999999998 66665 4666655 799999999999864
No 64
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=92.48 E-value=0.37 Score=47.50 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..|.+.|.+.+.. ..|++++++++|++|.. ++++|.|++.+|+++.||.||.|-..+.
T Consensus 105 ~~l~~~L~~~~~~----~~gv~~~~~~~v~~i~~-~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 105 ADLGQALLSRLAL----LTNIQLYCPARYKEIIR-NQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHHh----CCCcEEEcCCeEEEEEE-cCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 5678888877752 13689999999999998 7788888888888899999999999874
No 65
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.45 E-value=0.41 Score=51.35 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
..++++|.+.+. + |++|+.+++|++|.. .+++|.|.+.+|..+.+|.||+|.-...-
T Consensus 408 ~~l~~aL~~~a~-----~-Gv~i~~~~~V~~i~~-~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 408 AELCRALLALAG-----Q-QLTIHFGHEVARLER-EDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHhcc-----c-CcEEEeCCEeeEEEE-eCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 588888988876 6 899999999999998 67788898888877789999999988753
No 66
>PRK07588 hypothetical protein; Provisional
Probab=91.69 E-value=0.57 Score=46.48 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
..|.+.|.+.+. .|++|+++++|++|+. .+++|.|++++|+++.+|.||.|--....
T Consensus 103 ~~l~~~L~~~~~------~~v~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 103 GDLAAAIYTAID------GQVETIFDDSIATIDE-HRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred HHHHHHHHHhhh------cCeEEEeCCEEeEEEE-CCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 456666666553 2578999999999998 78889999999988999999999887643
No 67
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=91.59 E-value=0.44 Score=48.20 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCCC--cEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCADG--SQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~G--~~~~ad~VIvtiP~~ 106 (373)
.+|.++|.+.+. ++|++|+.+++|.+|.. .++++. |.+.++ .++.||+||+|+-.+
T Consensus 263 ~RL~~aL~~~~~-----~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFE-----QLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHH-----HCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 356777887776 67899999999999998 677665 555665 479999999997665
No 68
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=91.57 E-value=0.46 Score=49.01 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe---CCC--cEEEcCEEEEcCCccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC---ADG--SQYSADKVLITVSLGV 107 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~---~~G--~~~~ad~VIvtiP~~~ 107 (373)
...+.++|.+.+. ++|++|+++++|++|+...+++|.|++ .+| .++.+|+||+|.-.+.
T Consensus 177 p~~l~~aL~~~a~-----~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLV-----QNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHH-----hCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 4789999988876 568999999999999983334576653 234 3689999999998765
No 69
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=91.50 E-value=0.49 Score=47.84 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=45.7
Q ss_pred cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecC-CCcEE-EEeC-CCcEEEcCEEEEcCCc
Q psy7654 40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED-ANGVL-VTCA-DGSQYSADKVLITVSL 105 (373)
Q Consensus 40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~-~~~v~-v~~~-~G~~~~ad~VIvtiP~ 105 (373)
..++...+++.|.+.+. ++|++|+++++|++|..+. ++.+. |... ++.++.++.||+|+--
T Consensus 118 ~~~~g~~l~~~L~~~a~-----~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 118 LRGGGKALTNALYSSAE-----RLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred ecCCHHHHHHHHHHHHH-----HcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 34677889999988876 6789999999999998732 34442 3333 3457899999999984
No 70
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=91.46 E-value=0.48 Score=48.17 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC-----CCcEEEcCEEEEcCCccccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA-----DGSQYSADKVLITVSLGVFK 109 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~-----~G~~~~ad~VIvtiP~~~l~ 109 (373)
++.|.+.|.+.+.+ .-|.++++|+.|+.|+++.++.|.|+.. +..++.+++|+|..--..|.
T Consensus 180 FG~LTr~l~~~l~~----~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 180 FGALTRQLVEYLQK----QKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHHh----CCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 78899999888864 3468999999999999955566988753 22578999999987776554
No 71
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=91.43 E-value=0.46 Score=47.46 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC-----cEEEcCEEEEcCCcccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG-----SQYSADKVLITVSLGVF 108 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G-----~~~~ad~VIvtiP~~~l 108 (373)
...++.+|.+.+. +.|++|+.+++|++|.. ++++|.+.+.++ .++++|+||+|.-++.-
T Consensus 196 ~~~~~~~l~~~a~-----~~G~~i~~~~~V~~i~~-~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 196 IHKFTTGLAAACA-----RLGVQFRYGQEVTSIKT-DGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHHH-----hCCCEEEcCCEEEEEEE-eCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 3567777877775 67899999999999998 677776654332 36899999999998753
No 72
>PRK09126 hypothetical protein; Provisional
Probab=91.19 E-value=0.65 Score=45.92 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..|-+.|.+.+.. ..|++|+.+++|++|+. .++.+.|++++|+++++|.||.|-....
T Consensus 110 ~~l~~~l~~~~~~----~~g~~i~~~~~v~~~~~-~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 110 HLIRRAAYEAVSQ----QDGIELLTGTRVTAVRT-DDDGAQVTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred HHHHHHHHHHHhh----CCCcEEEcCCeEEEEEE-cCCeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence 3466666666532 35689999999999998 6778888888888999999999998764
No 73
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=91.09 E-value=0.7 Score=47.89 Aligned_cols=61 Identities=25% Similarity=0.335 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEE---eCCCc--EEEcCEEEEcCCcccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVT---CADGS--QYSADKVLITVSLGVF 108 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~---~~~G~--~~~ad~VIvtiP~~~l 108 (373)
...|.++|.+.+.+ ..|++|+++++|+.|++..+++|.|. +.+|+ ++.||+||+|.-.+..
T Consensus 183 ~~~L~~aL~~~l~~----~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 183 FGALTRKLAKHLES----HPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHHh----CCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 56788888877742 34789999999999998227778775 34453 6899999999998763
No 74
>PRK06753 hypothetical protein; Provisional
Probab=91.05 E-value=0.8 Score=44.97 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
..|.+.|.+.+.+ .+|+++++|++|+. +++++.|++++|+++.+|.||-|--....
T Consensus 98 ~~l~~~L~~~~~~-------~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 98 QTLIDIIKSYVKE-------DAIFTGKEVTKIEN-ETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred HHHHHHHHHhCCC-------ceEEECCEEEEEEe-cCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 5677777777753 57999999999998 78889999989989999999999886643
No 75
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=90.97 E-value=0.6 Score=48.35 Aligned_cols=60 Identities=27% Similarity=0.367 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEe---CCCc--EEEcCEEEEcCCcccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTC---ADGS--QYSADKVLITVSLGVF 108 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~---~~G~--~~~ad~VIvtiP~~~l 108 (373)
...|.++|.+.+. +.| ++|+++++|++|+...++.|.|.+ .+|+ ++.|++||++.-....
T Consensus 182 ~~~l~~aL~~~a~-----~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 182 FGALTRQLVGYLQ-----KQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHH-----hCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 5688888988876 456 699999999999983333476654 3353 6899999999888753
No 76
>PRK06834 hypothetical protein; Provisional
Probab=90.85 E-value=0.67 Score=47.84 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..|-+.|.+.+. +.|++|+++++|++|+. ++++|.|+..+|+++++|+||.|.-...
T Consensus 100 ~~le~~L~~~l~-----~~gv~i~~~~~v~~v~~-~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 100 NHIERILAEWVG-----ELGVPIYRGREVTGFAQ-DDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHHHHH-----hCCCEEEcCCEEEEEEE-cCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 345555666665 45789999999999998 7888888888888899999999987654
No 77
>PRK06116 glutathione reductase; Validated
Probab=90.14 E-value=0.73 Score=46.83 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
.+.+.+.+.+. +.|.+|+++++|.+|+. ++++ +.|.+.+|+++.+|.||+++..
T Consensus 209 ~~~~~l~~~L~-----~~GV~i~~~~~V~~i~~-~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 209 DIRETLVEEME-----KKGIRLHTNAVPKAVEK-NADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHH-----HCCcEEECCCEEEEEEE-cCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 45556666665 56799999999999987 5444 7788778888999999999754
No 78
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=90.08 E-value=0.57 Score=46.79 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=55.5
Q ss_pred cCCchhhcchhhhhhh---hcc-CCc---ceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE
Q psy7654 13 ASDSWFETSAKRYNSF---VTH-EGC---EDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL 85 (373)
Q Consensus 13 ~g~~~~~~S~~~~~~~---~~~-~g~---~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~ 85 (373)
+|.+++++++.+...- ... ++. ..+..+++|+.+|+++|+++-. .+|+||+.+..++. .+++|.
T Consensus 159 Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~~--------i~v~l~~~~~~~~~-~~~~~~ 229 (377)
T TIGR00031 159 WGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHPL--------IDVKLNCHINLLKD-KDSQLH 229 (377)
T ss_pred eCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcCC--------CEEEeCCccceeec-ccccee
Confidence 6888999999876420 001 111 1122368999999999998743 57999998888876 455565
Q ss_pred EEeCCCcEEEcCEEEEcCCcccc
Q psy7654 86 VTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 86 v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
+.. + .+. +.||.|.|+..+
T Consensus 230 ~~~--~-~~~-~~vi~Tg~id~~ 248 (377)
T TIGR00031 230 FAN--K-AIR-KPVIYTGLIDQL 248 (377)
T ss_pred ecc--c-ccc-CcEEEecCchHH
Confidence 532 2 222 789999998764
No 79
>PRK09897 hypothetical protein; Provisional
Probab=90.02 E-value=0.83 Score=47.75 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCC--ceEEcCCceEEEEecCCCcEEEEeCC-CcEEEcCEEEEcCCc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLG--KKLLLNKEVTKINWEDANGVLVTCAD-GSQYSADKVLITVSL 105 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G--~~I~ln~~V~~I~~~~~~~v~v~~~~-G~~~~ad~VIvtiP~ 105 (373)
++...+.+.+.+. +.| +.++.+++|++|+. .++++.|++.+ |.++.+|+||+|+-.
T Consensus 106 L~~~f~~l~~~a~-----~~G~~V~v~~~~~V~~I~~-~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 106 FRDQFLRLVDQAR-----QQKFAVAVYESCQVTDLQI-TNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHH-----HcCCeEEEEECCEEEEEEE-eCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 4566666666654 344 57889999999998 77889888755 467899999999976
No 80
>PRK07190 hypothetical protein; Provisional
Probab=89.74 E-value=0.86 Score=47.07 Aligned_cols=58 Identities=24% Similarity=0.312 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
..+-+.|.+.+. ++|++|+++++|++|+. +++++.++..+|+++.|++||.|.-....
T Consensus 109 ~~le~~L~~~~~-----~~Gv~v~~~~~v~~l~~-~~~~v~v~~~~g~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 109 SYVEKLLDDKLK-----EAGAAVKRNTSVVNIEL-NQAGCLTTLSNGERIQSRYVIGADGSRSF 166 (487)
T ss_pred HHHHHHHHHHHH-----HCCCEEEeCCEEEEEEE-cCCeeEEEECCCcEEEeCEEEECCCCCHH
Confidence 344444555554 56799999999999998 77888887778888999999999988753
No 81
>PRK08163 salicylate hydroxylase; Provisional
Probab=89.69 E-value=0.97 Score=44.77 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
..|.+.|.+.+. +.| .+++++++|++|.. +++++.|++.+|+++.+|.||.|.-....
T Consensus 109 ~~l~~~L~~~~~-----~~~~v~~~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 109 ADIHLSLLEAVL-----DHPLVEFRTSTHVVGIEQ-DGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHHH-----hcCCcEEEeCCEEEEEec-CCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 346666776664 233 68999999999998 77788888888888999999999876643
No 82
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.27 E-value=0.9 Score=42.74 Aligned_cols=54 Identities=22% Similarity=0.441 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
..+.+.+.+.+. +.|.++++ +.|++|+. .++.+.|.+.+|+++.+|+||+|+-.
T Consensus 57 ~~~~~~l~~~~~-----~~gv~~~~-~~v~~v~~-~~~~~~v~~~~~~~~~~d~liiAtG~ 110 (300)
T TIGR01292 57 PELMEKMKEQAV-----KFGAEIIY-EEVIKVDL-SDRPFKVKTGDGKEYTAKAVIIATGA 110 (300)
T ss_pred HHHHHHHHHHHH-----HcCCeEEE-EEEEEEEe-cCCeeEEEeCCCCEEEeCEEEECCCC
Confidence 356666666554 45688988 89999998 77788888888889999999999986
No 83
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=89.13 E-value=1.1 Score=44.38 Aligned_cols=53 Identities=23% Similarity=0.401 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
+.+.+.+.+. +.|.+++++++|++|.. +++++.|.+.+|+++.+|.||+++..
T Consensus 185 ~~~~l~~~l~-----~~gV~i~~~~~v~~i~~-~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 185 VSSRLQHRLT-----EMGVHLLLKSQLQGLEK-TDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHHHHH-----hCCCEEEECCeEEEEEc-cCCEEEEEEcCCcEEECCEEEECcCC
Confidence 4444555554 56789999999999998 66677788888889999999999765
No 84
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=89.06 E-value=0.95 Score=46.06 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
..+.+.|.+.+. +.|.+++++++|++|+. .++++.+++.+|+++.+|.||+++...
T Consensus 216 ~~~~~~l~~~l~-----~~gI~v~~~~~v~~i~~-~~~~~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 216 DEISDALSYHLR-----DSGVTIRHNEEVEKVEG-GDDGVIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred HHHHHHHHHHHH-----HcCCEEEECCEEEEEEE-eCCeEEEEECCCCEEEeCEEEEeecCC
Confidence 345556666665 55799999999999997 666787877788889999999998754
No 85
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=88.93 E-value=1.3 Score=43.82 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
.|-+.|.+.+.+ ..|.+++++++|++|.. .+++|.|++++|.++.+|.||.|.-...
T Consensus 113 ~l~~~l~~~~~~----~~g~~~~~~~~v~~i~~-~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 113 DVGQRLFALLDK----APGVTLHCPARVANVER-TQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHHhc----CCCcEEEcCCEEEEEEE-cCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 444555555532 23579999999999988 7888999888888899999999988763
No 86
>PRK05868 hypothetical protein; Validated
Probab=88.90 E-value=1.5 Score=43.43 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
.|.+.|.+.+. .|.+++++++|++|+. ++++|.|+.++|+++++|.||-|=-....
T Consensus 106 ~L~~~l~~~~~------~~v~i~~~~~v~~i~~-~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 106 DLVELLYGATQ------PSVEYLFDDSISTLQD-DGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred HHHHHHHHhcc------CCcEEEeCCEEEEEEe-cCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 45555554442 3578999999999988 78889999999989999999988876643
No 87
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=88.81 E-value=1 Score=45.71 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
..+.+.+.+.+. +.|.+++++++|++|.. .++++.|.+.+|+++.+|.||+|+..
T Consensus 207 ~~~~~~l~~~l~-----~~gV~i~~~~~v~~i~~-~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 207 DDMRALLARNME-----GRGIRIHPQTSLTSITK-TDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHHHHHH-----HCCCEEEeCCEEEEEEE-cCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 344455555555 56799999999999987 56667777777888999999999875
No 88
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=88.51 E-value=1.2 Score=43.88 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..+.+.|.+.+. +.| .+++ ++.|++|+. .++++.|++.+|+++.+|.||.|.-...
T Consensus 111 ~~l~~~L~~~~~-----~~~~v~~~-~~~v~~i~~-~~~~~~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 111 SLIERALWAALR-----FQPNLTWF-PARAQGLEV-DPDAATLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHH-----hCCCcEEE-cceeEEEEe-cCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence 467777877775 445 6788 999999988 7788889888888899999999888753
No 89
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.50 E-value=0.95 Score=46.11 Aligned_cols=55 Identities=29% Similarity=0.392 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC---cEEEcCEEEEcCCcc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG---SQYSADKVLITVSLG 106 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G---~~~~ad~VIvtiP~~ 106 (373)
.+.+.+.+.+. +.|.+|++|++|++|+. .++++.+.+.+| +++.+|.||+|+...
T Consensus 214 ~~~~~l~~~l~-----~~gV~i~~~~~V~~i~~-~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 214 EISKLAERALK-----KRGIKIKTGAKAKKVEQ-TDDGVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HHHHHHHHHHH-----HcCCEEEeCCEEEEEEE-eCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 44555555554 56799999999999998 666777776555 578999999997653
No 90
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=88.40 E-value=1.2 Score=44.17 Aligned_cols=58 Identities=17% Similarity=0.148 Sum_probs=45.5
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
.|-..|.+.+.. ..|.+|+++++|++|+. +++++.|+.++|+++++|.||.|--....
T Consensus 111 ~l~~~L~~~~~~----~~~i~i~~~~~v~~~~~-~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 111 LIQLGLWQQFAQ----YPNLTLMCPEKLADLEF-SAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred HHHHHHHHHHHh----CCCeEEECCCceeEEEE-cCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 344456555532 22478999999999998 78889999999999999999999888754
No 91
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=88.31 E-value=1.3 Score=41.44 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC-CcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD-GSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~-G~~~~ad~VIvtiP~~~ 107 (373)
..+-+.|.+.+. +.|++++++++|++|.. .++++.+...+ +.++++|.||.|.-...
T Consensus 91 ~~l~~~l~~~~~-----~~gv~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 91 DAFDEQLAERAQ-----EAGAELRLGTTVLDVEI-HDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHH-----HcCCEEEeCcEEeeEEE-eCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 345566666654 56789999999999988 67777665443 45799999999998753
No 92
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=88.25 E-value=0.98 Score=46.33 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCc--eEEcCCceEEEEecCCCcEEEEeCCC--c--EEEcCEEEEcCCc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGK--KLLLNKEVTKINWEDANGVLVTCADG--S--QYSADKVLITVSL 105 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~--~I~ln~~V~~I~~~~~~~v~v~~~~G--~--~~~ad~VIvtiP~ 105 (373)
..+.+-|.+... ..|. .|++|++|++|+. .+++|.|++.++ . +..+|+||+|+-.
T Consensus 111 ~ev~~YL~~~a~-----~fgl~~~I~~~t~V~~V~~-~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 111 REVLAYLQDFAR-----EFKIEEMVRFETEVVRVEP-VDGKWRVQSKNSGGFSKDEIFDAVVVCNGH 171 (461)
T ss_pred HHHHHHHHHHHH-----HcCCcceEEecCEEEEEee-cCCeEEEEEEcCCCceEEEEcCEEEEeccC
Confidence 556666655443 2233 3999999999998 778899887543 2 4579999999885
No 93
>PRK08013 oxidoreductase; Provisional
Probab=88.20 E-value=1.4 Score=43.94 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
..|-+.|.+.+.. .-|.+|+++++|++|+. +++++.|+..+|+++++|.||-|=-.+..
T Consensus 111 ~~l~~~L~~~~~~----~~~v~i~~~~~v~~i~~-~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 111 SVIHYALWQKAQQ----SSDITLLAPAELQQVAW-GENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHHHHhc----CCCcEEEcCCeeEEEEe-cCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 4566667666642 12578999999999998 77889888888989999999998887643
No 94
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=88.14 E-value=1.2 Score=46.25 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
...+.+.|.+++. +.|.+++++++|++|.. .++.+.|++.+|+++.+|++|+|+-..
T Consensus 266 ~~~l~~~l~~~l~-----~~gv~i~~~~~V~~I~~-~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 266 GSQLAANLEEHIK-----QYPIDLMENQRAKKIET-EDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHH-----HhCCeEEcCCEEEEEEe-cCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 3456777777765 45789999999999998 677788888888889999999999874
No 95
>PLN02507 glutathione reductase
Probab=88.10 E-value=1.3 Score=45.97 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
..+.+.+.+.+. +.|.+|++++.|++|+. .++++.|.+.+|+++.+|.||+++...
T Consensus 244 ~~~~~~l~~~l~-----~~GI~i~~~~~V~~i~~-~~~~~~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 244 DEMRAVVARNLE-----GRGINLHPRTNLTQLTK-TEGGIKVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred HHHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-eCCeEEEEECCCcEEEcCEEEEeecCC
Confidence 344455555554 56799999999999987 566777877788889999999997653
No 96
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.04 E-value=1.3 Score=46.02 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=47.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
.+|.+.|.+++. +.|.+++++++|++|.. .++.+.|.+.+|+++.+|.||+|+-..
T Consensus 266 ~~l~~~l~~~~~-----~~gv~i~~~~~V~~I~~-~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 266 PKLAAALEEHVK-----EYDVDIMNLQRASKLEP-AAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHH-----HCCCEEEcCCEEEEEEe-cCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 467777777775 56789999999999998 667788888888889999999999884
No 97
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=87.91 E-value=1.2 Score=45.19 Aligned_cols=55 Identities=27% Similarity=0.410 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC--cEEEcCEEEEcCCcc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG--SQYSADKVLITVSLG 106 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G--~~~~ad~VIvtiP~~ 106 (373)
.+.+.+.+.+. +.|.+++++++|++|+. .++++.+.+.+| +++.+|.||+|+...
T Consensus 212 ~~~~~~~~~l~-----~~gi~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 212 EVSKVVAKALK-----KKGVKILTNTKVTAVEK-NDDQVVYENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred HHHHHHHHHHH-----HcCCEEEeCCEEEEEEE-eCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence 44455555554 55789999999999998 677787776666 478999999998653
No 98
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=87.88 E-value=1.5 Score=43.81 Aligned_cols=57 Identities=25% Similarity=0.139 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..+..+|++.+. +.|+++..+++|++|...+++++ .|.+.+| ++.+++||+++-...
T Consensus 183 ~~l~~~l~~~a~-----~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 183 DAVAWGYARGAD-----RRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHH-----HCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 456677776665 67899999999999986234554 5777777 799999888766543
No 99
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=87.72 E-value=1.3 Score=45.13 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=44.4
Q ss_pred CcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCCCcEEEcCEEEEc
Q psy7654 33 GCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCADGSQYSADKVLIT 102 (373)
Q Consensus 33 g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~G~~~~ad~VIvt 102 (373)
|...++++..|.+.|++++..... =-|+...||++|.+|....++++. |.+ +|+++.++.||..
T Consensus 220 G~sPfLyP~YG~GELpQ~FcRl~A-----V~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d 284 (438)
T PF00996_consen 220 GKSPFLYPLYGLGELPQAFCRLSA-----VYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD 284 (438)
T ss_dssp SSSSEEEETT-TTHHHHHHHHHHH-----HTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred CCCCEEEEccCCccHHHHHHHHhh-----hcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence 334567788999999999986443 346899999999999983344443 554 7889999999963
No 100
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=87.52 E-value=1.8 Score=43.18 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..|.+.|.+.+.+ ..|.+|+++++|++|+. +++.+.|+..+|+++++|.||.|--...
T Consensus 111 ~~l~~~L~~~~~~----~~~v~v~~~~~v~~i~~-~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 111 RVIQLALLEQVQK----QDNVTLLMPARCQSIAV-GESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHHHHHHhc----CCCeEEEcCCeeEEEEe-eCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 4466677776642 23578999999999998 7788889888998999999999988764
No 101
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=87.21 E-value=1.5 Score=44.91 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
.+.+.+.+.+. +.|.+|+++++|++|+. .++++.|.+.+|+++.+|.||+++..
T Consensus 219 ~~~~~l~~~L~-----~~gV~i~~~~~v~~v~~-~~~~~~v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 219 DAAEVLEEVFA-----RRGMTVLKRSRAESVER-TGDGVVVTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred HHHHHHHHHHH-----HCCcEEEcCCEEEEEEE-eCCEEEEEECCCcEEEecEEEEeecC
Confidence 34444555554 56789999999999987 66778787778888999999998665
No 102
>PRK07045 putative monooxygenase; Reviewed
Probab=86.90 E-value=2.1 Score=42.41 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc--EEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG--VLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~--v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
..|.+.|.+.+.. ..|.+|+++++|++|+. ++++ +.|++++|+++.+|.||.|--....
T Consensus 106 ~~l~~~L~~~~~~----~~gv~i~~~~~v~~i~~-~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 106 EQLRRLLLAKLDG----LPNVRLRFETSIERIER-DADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHHhc----CCCeeEEeCCEEEEEEE-CCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 4566777777642 23579999999999998 4444 4678888889999999998887753
No 103
>PRK06184 hypothetical protein; Provisional
Probab=86.55 E-value=1.6 Score=45.00 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe---CCCcEEEcCEEEEcCCcccc
Q psy7654 47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC---ADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~---~~G~~~~ad~VIvtiP~~~l 108 (373)
+-+.|.+.+. +.|++|+++++|++|+. ++++|.++. .+++++++|+||.|.-....
T Consensus 111 le~~L~~~l~-----~~gv~i~~~~~v~~i~~-~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 111 TERILRERLA-----ELGHRVEFGCELVGFEQ-DADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHH-----HCCCEEEeCcEEEEEEE-cCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 4445555554 44689999999999998 777777765 45668999999999887753
No 104
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=85.96 E-value=1.5 Score=42.95 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
...++.+|++.+.. ..|++|+.+++|++|+. . .|.+.+| ++.||+||+|+-...
T Consensus 144 p~~~~~~l~~~~~~----~~Gv~i~~~t~V~~i~~-~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 144 PREAIPALAAYLAE----QHGVEFHWNTAVTSVET-G----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHHh----cCCCEEEeCCeEEEEec-C----eEEeCCC-cEEeCEEEECCCCCh
Confidence 35677778776641 23799999999999975 3 5677777 578999999998865
No 105
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=85.94 E-value=2 Score=43.56 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=34.9
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
+.|++|+.+++|++|.. .++++.+...+|.++.|+.||.|.-.+
T Consensus 120 ~~Gv~i~~~~~V~~i~~-~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 120 EAGAQLITGIRVDNLVQ-RDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred HCCCEEECCCEEEEEEE-eCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 55799999999999988 566664444466689999999998664
No 106
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=85.70 E-value=1.9 Score=43.68 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=44.2
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEE-EeCCC--cEEEcCEEEEcCCc
Q psy7654 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLV-TCADG--SQYSADKVLITVSL 105 (373)
Q Consensus 41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v-~~~~G--~~~~ad~VIvtiP~ 105 (373)
..|+ .|.+.|.+.+. +.|++|+.+++|+++.. .++++.+ .+.+| .++.+|.||+|+-.
T Consensus 256 lpG~-rL~~aL~~~l~-----~~Gv~I~~g~~V~~v~~-~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 256 VPGL-RLQNALRRAFE-----RLGGRIMPGDEVLGAEF-EGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred CchH-HHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-eCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 4565 68888888886 56899999999999998 5666653 34444 35799999999775
No 107
>PLN02463 lycopene beta cyclase
Probab=85.50 E-value=2.4 Score=43.37 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
..|-+.|.+++. +.|++++ +.+|++|+. .++++.|++.+|+++.||.||.|.-..
T Consensus 114 ~~L~~~Ll~~~~-----~~GV~~~-~~~V~~I~~-~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 114 KKLKSKMLERCI-----ANGVQFH-QAKVKKVVH-EESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHHh-----hcCCEEE-eeEEEEEEE-cCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 345566666664 4467775 679999998 788889999999899999999999765
No 108
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=85.41 E-value=0.95 Score=34.23 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG 91 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G 91 (373)
..+.+.+.+.+. +.|.+|++|+.|++|.. +++++.|++++|
T Consensus 40 ~~~~~~~~~~l~-----~~gV~v~~~~~v~~i~~-~~~~~~V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLR-----KRGVEVHTNTKVKEIEK-DGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHH-----HTTEEEEESEEEEEEEE-ETTSEEEEEETS
T ss_pred HHHHHHHHHHHH-----HCCCEEEeCCEEEEEEE-eCCEEEEEEecC
Confidence 444555555554 45799999999999999 666677877765
No 109
>PRK06996 hypothetical protein; Provisional
Probab=85.29 E-value=2.1 Score=42.63 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC---cEEEcCEEEEcCC
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG---SQYSADKVLITVS 104 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G---~~~~ad~VIvtiP 104 (373)
..|-+.|.+.+. +.|.+++++++|++|+. ++++|.++..++ +++++|.||-|--
T Consensus 115 ~~l~~~L~~~~~-----~~g~~~~~~~~v~~~~~-~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 115 GSLVAALARAVR-----GTPVRWLTSTTAHAPAQ-DADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHHHHH-----hCCCEEEcCCeeeeeee-cCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 567777877776 55789999999999988 788898887654 5799999999955
No 110
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=84.92 E-value=3.1 Score=44.69 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
-..|.+.|.+.+.. ..++++++|++|+. .+++|.|++.+|+++.+|.||.|--....
T Consensus 193 R~~L~~~L~~alg~-------~~i~~g~~V~~I~~-~~d~VtV~~~dG~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 193 RMTLQQILARAVGE-------DVIRNESNVVDFED-SGDKVTVVLENGQRYEGDLLVGADGIWSK 249 (668)
T ss_pred HHHHHHHHHhhCCC-------CEEEcCCEEEEEEE-eCCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence 35677888777752 35889999999998 78899999989988999999999887653
No 111
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=84.77 E-value=2.1 Score=43.65 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=44.2
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEe--CCC--cEEEcCEEEEcCCc
Q psy7654 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTC--ADG--SQYSADKVLITVSL 105 (373)
Q Consensus 41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~--~~G--~~~~ad~VIvtiP~ 105 (373)
.+|...+++.|.+.+. +.|++|+++++|++|.. ++++|. |.+ .+| ..+.++.||+|+-.
T Consensus 127 ~g~g~~l~~~l~~~~~-----~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 127 WGGGKALVNALYRSAE-----RLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred cCCHHHHHHHHHHHHH-----HCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 4556778888888776 67899999999999998 566653 433 233 35789999999864
No 112
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=84.43 E-value=2.5 Score=42.77 Aligned_cols=53 Identities=25% Similarity=0.380 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
.+.+.+.+.+. +.|.+++++++|++|.. +++++.+.+.++ ++.+|.||+++..
T Consensus 200 ~~~~~l~~~l~-----~~gV~v~~~~~v~~i~~-~~~~v~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 200 DIADNIATILR-----DQGVDIILNAHVERISH-HENQVQVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-cCCEEEEEEcCC-eEEeCEEEEeecC
Confidence 34455555555 56899999999999998 666777776665 6899999999654
No 113
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=84.40 E-value=2.2 Score=44.22 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC---Cc--EEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD---GS--QYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~---G~--~~~ad~VIvtiP~~~ 107 (373)
.+|...++.... ..|++|+.+++|++|.. +++.+.|++.+ |+ ++.++.||.|.-++.
T Consensus 155 ~rl~~~l~~~A~-----~~Ga~i~~~~~V~~i~~-~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAA-----ERGAEILTRTRVVSARR-ENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHH-----HcCCEEEcCcEEEEEEE-eCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 556666665554 56899999999999998 66667666542 43 689999999999864
No 114
>PRK14727 putative mercuric reductase; Provisional
Probab=84.14 E-value=2.8 Score=43.03 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
.+.+.+.+.+. +.|.+|+++++|++|+. .++++.+.+.++ ++.+|.||+++...
T Consensus 229 ~~~~~l~~~L~-----~~GV~i~~~~~V~~i~~-~~~~~~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 229 LLGETLTACFE-----KEGIEVLNNTQASLVEH-DDNGFVLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred HHHHHHHHHHH-----hCCCEEEcCcEEEEEEE-eCCEEEEEEcCC-eEEeCEEEEccCCC
Confidence 44555556665 56799999999999987 666777776665 68999999998875
No 115
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=84.10 E-value=2.5 Score=43.28 Aligned_cols=54 Identities=41% Similarity=0.557 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCc--EEEcCEEEEcCCc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS--QYSADKVLITVSL 105 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~--~~~ad~VIvtiP~ 105 (373)
.+.+.+.+.+. +.|.+++++++|++++. .++++.++.++|+ ++++|+|++|+--
T Consensus 215 ei~~~~~~~l~-----~~gv~i~~~~~v~~~~~-~~~~v~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 215 EISKELTKQLE-----KGGVKILLNTKVTAVEK-KDDGVLVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred HHHHHHHHHHH-----hCCeEEEccceEEEEEe-cCCeEEEEEecCCCCEEEeeEEEEccCC
Confidence 34444455554 34578999999999998 6666888887775 6889999999864
No 116
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=83.87 E-value=2.4 Score=42.80 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc---EEEEeCCCc--EEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG---VLVTCADGS--QYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~---v~v~~~~G~--~~~ad~VIvtiP~~~ 107 (373)
..+.+.|.+.+. +.|++|+++++|++|..+.+++ +.+...+++ .+.++.||+|+-...
T Consensus 130 ~~l~~~l~~~~~-----~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAK-----KEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHH-----HcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 468888888776 6789999999999999832343 344444453 367899999987543
No 117
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=83.75 E-value=2.8 Score=43.29 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
..+.+.+.+.+. +.|.+|++++.|++|....++...|.+.+|+++.+|.||+++-.
T Consensus 231 ~~~~~~l~~~L~-----~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 231 STLRKELTKQLR-----ANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred HHHHHHHHHHHH-----HcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 456666666675 56799999999999987223335666667778999999997664
No 118
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.63 E-value=2.5 Score=43.79 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC----cEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG----SQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G----~~~~ad~VIvtiP~~~ 107 (373)
..|...++.... +.|++++.+++|++|.. +++.+.|++.++ .++.++.||.|.-++.
T Consensus 155 ~rl~~~l~~~a~-----~~Ga~i~~~~~V~~i~~-~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAA-----ERGATILTRTRCVSARR-EGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHH-----HCCCEEecCcEEEEEEE-cCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 556666665554 67899999999999998 677677765443 2589999999999875
No 119
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=83.27 E-value=3.4 Score=41.25 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=35.1
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
+.|.+|+++++|++|.. ++.+.+.+.+|+++.+|.||+++..
T Consensus 198 ~~GV~i~~~~~V~~i~~--~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 198 QAGVRILLNNAIEHVVD--GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HCCCEEEeCCeeEEEEc--CCEEEEEECCCCEEECCEEEECCCC
Confidence 45789999999999975 4456777788889999999998865
No 120
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=83.07 E-value=2.8 Score=42.83 Aligned_cols=55 Identities=36% Similarity=0.491 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC--CC--cEEEcCEEEEcCCc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA--DG--SQYSADKVLITVSL 105 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~--~G--~~~~ad~VIvtiP~ 105 (373)
..+.+.+.+.+. +.|.+|++|++|++|+. .++++.+... +| +++.+|.||+++-.
T Consensus 213 ~~~~~~l~~~l~-----~~gV~i~~~~~v~~i~~-~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 213 AEVSKEIAKQYK-----KLGVKILTGTKVESIDD-NGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHH-----HCCCEEEECCEEEEEEE-eCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 345556666665 56899999999999987 5666655443 55 36899999999754
No 121
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=82.68 E-value=2 Score=42.87 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE---EE-eCCCc--EEEcCEEEEcCCccc
Q psy7654 43 GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL---VT-CADGS--QYSADKVLITVSLGV 107 (373)
Q Consensus 43 G~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~---v~-~~~G~--~~~ad~VIvtiP~~~ 107 (373)
+...+++.|.+.+. ++|++|+++++|++|.. ++++|. +. ..+|+ ++.|++||+|+---.
T Consensus 139 ~g~~~~~~l~~~~~-----~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 139 GGKALIEALAKAAE-----EAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HHHHHHHHHHHHHH-----HTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred cHHHHHHHHHHHHh-----hcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 67889999999887 67899999999999999 666652 33 13554 468999999987654
No 122
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=82.68 E-value=3 Score=44.03 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE---EEEeCCCc-EEEc-CEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV---LVTCADGS-QYSA-DKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v---~v~~~~G~-~~~a-d~VIvtiP~~~ 107 (373)
..|+++|.+.+. ++|++|+++++|++|.. ++++| .+...++. ++.+ +.||+|+-...
T Consensus 217 ~~l~~~L~~~a~-----~~Gv~i~~~t~v~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAE-----DLGVRIWESAPARELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHH-----hCCCEEEcCCEEEEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 457778887776 67899999999999987 55554 33333442 4678 89999986654
No 123
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=82.41 E-value=3.1 Score=42.63 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC--C--cEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD--G--SQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~--G--~~~~ad~VIvtiP~~ 106 (373)
..+.+.+.+.+. +.|.+|+++++|++|+. .++++.+...+ | +++.+|.||+++...
T Consensus 224 ~~~~~~~~~~l~-----~~gi~i~~~~~v~~i~~-~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 224 EQVAKEAAKAFT-----KQGLDIHLGVKIGEIKT-GGKGVSVAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHHHHH-----HcCcEEEeCcEEEEEEE-cCCEEEEEEEeCCCceeEEEcCEEEEccCCc
Confidence 445566666665 56789999999999998 66666665433 3 468999999998653
No 124
>PRK14694 putative mercuric reductase; Provisional
Probab=82.26 E-value=3.5 Score=42.19 Aligned_cols=55 Identities=11% Similarity=0.265 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
..+.+.+.+.+. +.|.++++++.|++|+. +++.+.+.+.++ ++.+|.||+|+...
T Consensus 218 ~~~~~~l~~~l~-----~~GI~v~~~~~v~~i~~-~~~~~~v~~~~~-~i~~D~vi~a~G~~ 272 (468)
T PRK14694 218 PAVGEAIEAAFR-----REGIEVLKQTQASEVDY-NGREFILETNAG-TLRAEQLLVATGRT 272 (468)
T ss_pred HHHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-cCCEEEEEECCC-EEEeCEEEEccCCC
Confidence 445566666665 56799999999999987 666666766554 79999999998653
No 125
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=82.17 E-value=3.5 Score=42.05 Aligned_cols=55 Identities=11% Similarity=0.171 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEEEEeCCC-cEEEcCEEEEcCCcc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVLVTCADG-SQYSADKVLITVSLG 106 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~v~~~~G-~~~~ad~VIvtiP~~ 106 (373)
.+.+.+.+.+. +.|.++++|+.|++|.. +++ .+.+...+| +++.+|.||+++...
T Consensus 208 ~~~~~~~~~l~-----~~gI~i~~~~~v~~i~~-~~~~~~~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 208 MISETITEEYE-----KEGINVHKLSKPVKVEK-TVEGKLVIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred HHHHHHHHHHH-----HcCCEEEcCCEEEEEEE-eCCceEEEEECCCcEEEEcCEEEEeeCCC
Confidence 34455555555 56789999999999987 443 366776677 568999999998753
No 126
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=81.98 E-value=4.4 Score=40.03 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
...|-+.|.+++. +.+ .+++.+++|++|.. .+++|.|+..++ ++++|.||.|=-....
T Consensus 103 r~~L~~~L~~~~~-----~~~~v~~~~~~~v~~i~~-~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 103 NSDFKKILLSKIT-----NNPLITLIDNNQYQEVIS-HNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHHHHh-----cCCCcEEECCCeEEEEEE-cCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 4667788877775 333 67899999999998 778888888776 8999999998877643
No 127
>PRK07846 mycothione reductase; Reviewed
Probab=81.93 E-value=4.2 Score=41.46 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=35.6
Q ss_pred CceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 64 G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
|.+++++++|++|+. .++++.|.+.+|+++.+|.||+++...
T Consensus 220 ~v~i~~~~~v~~i~~-~~~~v~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 220 RWDVRLGRNVVGVSQ-DGSGVTLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred CeEEEeCCEEEEEEE-cCCEEEEEECCCcEeecCEEEEEECCc
Confidence 578999999999987 666777877788889999999998653
No 128
>KOG2820|consensus
Probab=81.86 E-value=2.9 Score=41.01 Aligned_cols=65 Identities=32% Similarity=0.416 Sum_probs=49.2
Q ss_pred CCcH---HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEec--CCCcEEEEeCCCcEEEcCEEEEcCCcccccc
Q psy7654 41 KGGY---GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE--DANGVLVTCADGSQYSADKVLITVSLGVFKS 110 (373)
Q Consensus 41 ~gG~---~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~--~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~ 110 (373)
-||+ .+-+++|...+. .+|+.++.+..|+.++.. ++..+.|.|.+|..+.++.+|+|+-+++.+.
T Consensus 146 ~gGvi~a~kslk~~~~~~~-----~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~kl 215 (399)
T KOG2820|consen 146 SGGVINAAKSLKALQDKAR-----ELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKL 215 (399)
T ss_pred cccEeeHHHHHHHHHHHHH-----HcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhh
Confidence 4663 334445555554 678999999999999853 2445788899998899999999999987654
No 129
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=81.84 E-value=4.5 Score=39.90 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..+.+.|.+.+. +.|++++ +++|+.|..+.++.+.|++.+|++++++.||.|.....
T Consensus 85 ~~l~~~l~~~~~-----~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCP-----EGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHH-----hcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 556677777665 4467775 67899998833667888888888899999999999875
No 130
>PTZ00052 thioredoxin reductase; Provisional
Probab=81.68 E-value=3.7 Score=42.53 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
+.+.+.+.+. +.|.++++++.|++|+. .++.+.|...+|+++.+|.||+++...
T Consensus 224 ~~~~l~~~l~-----~~GV~i~~~~~v~~v~~-~~~~~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 224 CSEKVVEYMK-----EQGTLFLEGVVPINIEK-MDDKIKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred HHHHHHHHHH-----HcCCEEEcCCeEEEEEE-cCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence 3445555554 55789999999999987 555667777778889999999998764
No 131
>PRK06475 salicylate hydroxylase; Provisional
Probab=81.65 E-value=4 Score=40.64 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe---CCCcEEEcCEEEEcCCccccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC---ADGSQYSADKVLITVSLGVFK 109 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~---~~G~~~~ad~VIvtiP~~~l~ 109 (373)
..|.+.|.+.+.+ ..|.+|+++++|++|.. +++++.|+. .+++++++|.||-|=-....-
T Consensus 107 ~~l~~~L~~~~~~----~~~i~v~~~~~v~~~~~-~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 107 ADLQSALLDACRN----NPGIEIKLGAEMTSQRQ-TGNSITATIIRTNSVETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHHh----cCCcEEEECCEEEEEec-CCCceEEEEEeCCCCcEEecCEEEECCCccHhH
Confidence 5677777776642 22478999999999998 777787765 334578999999998877543
No 132
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=80.98 E-value=3.8 Score=42.52 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEe---CCCc--EEEcCEEEEcCCccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTC---ADGS--QYSADKVLITVSLGV 107 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~---~~G~--~~~ad~VIvtiP~~~ 107 (373)
-..++.+|++... +.|++|..+++|++|.. .++++ .|++ .+|+ ++.++.||.|+-++.
T Consensus 127 p~~l~~al~~~A~-----~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 127 PFRLVAANVLDAQ-----EHGARIFTYTKVTGLIR-EGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHH-----HcCCEEEcCcEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 4667777777665 67899999999999998 56654 2332 2342 689999999998774
No 133
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=80.86 E-value=5.3 Score=39.63 Aligned_cols=56 Identities=30% Similarity=0.376 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..+-+.+.+.+. .++.+.+++.|++|+. .++.+.|.+.+|++++|+.||-|.++..
T Consensus 87 ~~f~~~l~~~~~------~~~~~~~~~~V~~i~~-~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 87 ADFYEFLLERAA------AGGVIRLNARVTSIEE-TGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHHhh------hCCeEEEccEEEEEEe-cCceEEEEECCCCEEEeeEEEECCCccc
Confidence 455555666553 2367899999999999 7778888999999999999999998644
No 134
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=80.57 E-value=5.3 Score=40.75 Aligned_cols=42 Identities=31% Similarity=0.427 Sum_probs=35.7
Q ss_pred CceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 64 G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
|.++++++.|++|+. +++++.|++.+|+++.+|.||+++...
T Consensus 223 gI~i~~~~~V~~i~~-~~~~v~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQ-DGDGVTLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred CCEEEeCCEEEEEEE-cCCeEEEEEcCCCEEEcCEEEEeeccC
Confidence 578999999999997 666777877778889999999999753
No 135
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=80.55 E-value=4.2 Score=41.14 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=33.8
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
+.|.+++++++|++|+. +++++.+.. +|+++.+|.||+|+..
T Consensus 210 ~~GI~i~~~~~V~~i~~-~~~~v~v~~-~g~~i~~D~viva~G~ 251 (438)
T PRK07251 210 EDGITFLLNAHTTEVKN-DGDQVLVVT-EDETYRFDALLYATGR 251 (438)
T ss_pred HcCCEEEcCCEEEEEEe-cCCEEEEEE-CCeEEEcCEEEEeeCC
Confidence 45789999999999987 666676655 4568999999998654
No 136
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=79.75 E-value=4.5 Score=42.36 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=32.0
Q ss_pred ceEEcCCceEEEEecCC----CcEEEEeCC-Cc--EEEcCEEEEcCCccc
Q psy7654 65 KKLLLNKEVTKINWEDA----NGVLVTCAD-GS--QYSADKVLITVSLGV 107 (373)
Q Consensus 65 ~~I~ln~~V~~I~~~~~----~~v~v~~~~-G~--~~~ad~VIvtiP~~~ 107 (373)
..|++||+|++|++..+ ++|.|++.+ |+ +..+|+||+|+-...
T Consensus 101 ~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 101 KHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp GGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred ceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence 57999999999998432 469998764 42 347999999987654
No 137
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=79.73 E-value=4.5 Score=41.95 Aligned_cols=54 Identities=28% Similarity=0.335 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE---EEEeCCC--cEEEcCEEEEcCC
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV---LVTCADG--SQYSADKVLITVS 104 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v---~v~~~~G--~~~~ad~VIvtiP 104 (373)
..+++.|.+.+. +.|++|+++++|++|.. ++++| .+...+| .++.++.||+|+-
T Consensus 190 ~~l~~~L~~~~~-----~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 190 GYLVDGLLKNVQ-----ERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHH-----HcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 457888887775 56799999999999987 55653 3444443 3578999999996
No 138
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=79.10 E-value=5.2 Score=40.39 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
..+.+.+.+.+. +.|.+++++++|++|.. +++.+.+.+.+ .++.+|.||+++..
T Consensus 191 ~~~~~~l~~~l~-----~~gI~v~~~~~v~~i~~-~~~~~~v~~~~-~~i~~d~vi~a~G~ 244 (444)
T PRK09564 191 KEITDVMEEELR-----ENGVELHLNEFVKSLIG-EDKVEGVVTDK-GEYEADVVIVATGV 244 (444)
T ss_pred HHHHHHHHHHHH-----HCCCEEEcCCEEEEEec-CCcEEEEEeCC-CEEEcCEEEECcCC
Confidence 345555555554 56789999999999975 44434455544 47999999998885
No 139
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=78.87 E-value=4.4 Score=42.45 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEe---CCC--cEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTC---ADG--SQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~---~~G--~~~~ad~VIvtiP~~~ 107 (373)
..|+.+++.... +.|++|+.+++|++|.. +++++. |.+ .+| .++.+++||.|+-++.
T Consensus 149 ~rl~~al~~~A~-----~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 149 FRLTAANMLDAK-----EHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHH-----hCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 566677766554 67899999999999998 666542 332 233 3689999999998874
No 140
>PRK06370 mercuric reductase; Validated
Probab=78.81 E-value=5.7 Score=40.47 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=37.5
Q ss_pred HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe--C-CCcEEEcCEEEEcCCc
Q psy7654 47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC--A-DGSQYSADKVLITVSL 105 (373)
Q Consensus 47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~--~-~G~~~~ad~VIvtiP~ 105 (373)
+.+.+.+.+. +.|.+|+++++|.+|+. .++++.|.. . ++.++.+|.||+++..
T Consensus 214 ~~~~l~~~l~-----~~GV~i~~~~~V~~i~~-~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 214 VAAAVREILE-----REGIDVRLNAECIRVER-DGDGIAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred HHHHHHHHHH-----hCCCEEEeCCEEEEEEE-cCCEEEEEEEeCCCceEEEeCEEEECcCC
Confidence 4444555554 56789999999999987 555554433 2 3457899999999865
No 141
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=78.60 E-value=5.3 Score=39.11 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFK 109 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~ 109 (373)
..++++|++.+. ++| ..+..+++|..++. ....+.|.+.+|+ +.+|+||+|+-...-.
T Consensus 156 ~~~~~~l~~~~~-----~~G~~~~~~~~~~~~~~~-~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 156 RLLTRALAAAAE-----ELGVVIIEGGTPVTSLER-DGRVVGVETDGGT-IEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHHHHHHH-----hcCCeEEEccceEEEEEe-cCcEEEEEeCCcc-EEeCEEEEcCchHHHH
Confidence 578889988876 677 56777999999998 3345788888885 9999999999987543
No 142
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=78.46 E-value=5.3 Score=42.13 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE---EEEeCCCc-EEEcC-EEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV---LVTCADGS-QYSAD-KVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v---~v~~~~G~-~~~ad-~VIvtiP~~~ 107 (373)
..|+++|.+.+. ++|++|+++++|++|.. ++++| .+...++. .+.++ .||+|+--..
T Consensus 214 ~~l~~~L~~~~~-----~~Gv~i~~~~~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSAL-----DLGIPILTGTPARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHH-----hCCCEEEeCCEEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 568888887776 67899999999999998 56654 33333343 36775 7888887643
No 143
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=78.24 E-value=5.4 Score=43.81 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=36.3
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
++|.+|++++.|++|.. ++....|...+|+++.+|.||+++...
T Consensus 194 ~~GV~v~~~~~v~~i~~-~~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 194 QKGLTFLLEKDTVEIVG-ATKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HcCCEEEeCCceEEEEc-CCceEEEEECCCCEEEcCEEEECCCCC
Confidence 56799999999999986 444456777888899999999998863
No 144
>PRK13748 putative mercuric reductase; Provisional
Probab=78.01 E-value=5.4 Score=41.70 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
..+.+.+.+.+. +.|.+|+++++|++|+. .++.+.+.+.++ ++.+|.||+|+...
T Consensus 310 ~~~~~~l~~~l~-----~~gI~i~~~~~v~~i~~-~~~~~~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 310 PAIGEAVTAAFR-----AEGIEVLEHTQASQVAH-VDGEFVLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred HHHHHHHHHHHH-----HCCCEEEcCCEEEEEEe-cCCEEEEEecCC-eEEeCEEEEccCCC
Confidence 345555656665 56789999999999987 566677776665 79999999997653
No 145
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=77.39 E-value=6 Score=38.32 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
-..|.+.|.++.. ..|.++.. ..|.+++. .++.+.|.+.+|. +++++||+|+-...
T Consensus 60 g~~L~~~~~~~a~-----~~~~~~~~-~~v~~v~~-~~~~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 60 GPELMEQMKEQAE-----KFGVEIVE-DEVEKVEL-EGGPFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred hHHHHHHHHHHHh-----hcCeEEEE-EEEEEEee-cCceEEEEECCCe-EEEeEEEECcCCcc
Confidence 4567888887775 45666666 78888887 4447899999985 99999999998854
No 146
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=77.21 E-value=5.7 Score=40.07 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
.+.+.+.+.+. ++|.+|+++++|++|.. +. |.+++|+++.+|.||+++..
T Consensus 229 ~~~~~~~~~L~-----~~gV~v~~~~~v~~v~~---~~--v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 229 ALRKYGQRRLR-----RLGVDIRTKTAVKEVLD---KE--VVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHHHH-----HCCCEEEeCCeEEEEeC---CE--EEECCCCEEEccEEEEccCC
Confidence 45555666665 67899999999999975 23 45668889999999998763
No 147
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=77.06 E-value=6.1 Score=39.99 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCCCCCC---CceEEcCCceEEEEec------CCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDL---GKKLLLNKEVTKINWE------DANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~---G~~I~ln~~V~~I~~~------~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
..|-+.|.+.+. +. +.+++++++|++|+.+ +++++.|+..+|++++||.||-|=-....
T Consensus 117 ~~l~~~L~~~~~-----~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 117 DNIQNSLYNRLQ-----EYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHHHH-----hCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 445666666654 22 2689999999999752 24678888889999999999998877654
No 148
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=76.94 E-value=5.4 Score=42.03 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=41.8
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EE-eCCCcE--EEc-CEEEEcCCcc
Q psy7654 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VT-CADGSQ--YSA-DKVLITVSLG 106 (373)
Q Consensus 41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~-~~~G~~--~~a-d~VIvtiP~~ 106 (373)
.+| ..|+.+|.+.+. ++|++|+++++|++|.. ++++|. |. ..+|++ +.+ +.||+|+---
T Consensus 214 ~~G-~~l~~~L~~~~~-----~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf 277 (564)
T PRK12845 214 AGG-QALAAGLFAGVL-----RAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGF 277 (564)
T ss_pred CCh-HHHHHHHHHHHH-----HCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCc
Confidence 355 889999988876 67899999999999987 555542 32 224433 456 5799987654
No 149
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=76.77 E-value=5.9 Score=39.82 Aligned_cols=52 Identities=23% Similarity=0.366 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
+.+.+.+.+. +.|.++++++.|.+|.. ++ .+ +...+|+++.+|.||++++..
T Consensus 181 ~~~~~~~~l~-----~~gV~v~~~~~v~~i~~-~~-~~-v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 181 MNQIVEEELK-----KHEINLRLNEEVDSIEG-EE-RV-KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHHHH-----HcCCEEEeCCEEEEEec-CC-CE-EEEcCCCEEEeCEEEECCCcc
Confidence 4444555554 56789999999999986 33 34 445577889999999998863
No 150
>PRK08244 hypothetical protein; Provisional
Probab=76.62 E-value=5.6 Score=40.89 Aligned_cols=45 Identities=27% Similarity=0.386 Sum_probs=35.2
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeC--CC-cEEEcCEEEEcCCccc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCA--DG-SQYSADKVLITVSLGV 107 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~--~G-~~~~ad~VIvtiP~~~ 107 (373)
+.|.+|+++++|++|+. +++++.|+.. +| +++++|+||.|--...
T Consensus 112 ~~gv~v~~~~~v~~i~~-~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 112 SLGVEIFRGAEVLAVRQ-DGDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred HcCCeEEeCCEEEEEEE-cCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 34689999999999998 7777766543 45 4789999999987653
No 151
>PRK06175 L-aspartate oxidase; Provisional
Probab=76.45 E-value=7.4 Score=39.51 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEE-eCCCc--EEEcCEEEEcCCc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVT-CADGS--QYSADKVLITVSL 105 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~-~~~G~--~~~ad~VIvtiP~ 105 (373)
..++++|.+.+.+ +.|++|+++++|++|.. +++++ .|. ..+++ ++.|+.||+|+--
T Consensus 128 ~~l~~~L~~~~~~----~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 128 KKVEKILLKKVKK----RKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHHh----cCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 4578888776642 34789999999999987 55553 222 22443 5789999999875
No 152
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=76.41 E-value=6.1 Score=40.25 Aligned_cols=53 Identities=13% Similarity=0.299 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC---CCcEEEcCEEEEcCCc
Q psy7654 47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA---DGSQYSADKVLITVSL 105 (373)
Q Consensus 47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~---~G~~~~ad~VIvtiP~ 105 (373)
+.+.+.+.+. ..|.+++++++|++|.. +++.+.+++. +++++.+|.||+|+..
T Consensus 209 ~~~~l~~~l~-----~~gV~i~~~~~V~~i~~-~~~~~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 209 ISAAVEEALA-----EEGIEVVTSAQVKAVSV-RGGGKIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHHHH-----HcCCEEEcCcEEEEEEE-cCCEEEEEEEeCCCceEEEeCEEEEeECC
Confidence 4444555554 45789999999999987 5555555543 2357999999999764
No 153
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=76.24 E-value=5.4 Score=39.05 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
+.+.+.+.+. +.|.+++++++|++|.. + .|.+.+|+++.+|.||++++.
T Consensus 193 ~~~~~~~~l~-----~~gV~v~~~~~v~~i~~---~--~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 193 VRRLVLRLLA-----RRGIEVHEGAPVTRGPD---G--ALILADGRTLPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHH-----HCCCEEEeCCeeEEEcC---C--eEEeCCCCEEecCEEEEccCC
Confidence 3344444444 56799999999999964 2 355567889999999999885
No 154
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=75.97 E-value=5.7 Score=41.41 Aligned_cols=44 Identities=30% Similarity=0.345 Sum_probs=36.2
Q ss_pred CceEEcCCceEEEEecCCCcEEEEeC--CC--cEEEcCEEEEcCCcccc
Q psy7654 64 GKKLLLNKEVTKINWEDANGVLVTCA--DG--SQYSADKVLITVSLGVF 108 (373)
Q Consensus 64 G~~I~ln~~V~~I~~~~~~~v~v~~~--~G--~~~~ad~VIvtiP~~~l 108 (373)
|++|+++++|++|+. ++++|.|+.. +| +++++|.||-|--....
T Consensus 128 gv~v~~g~~v~~i~~-~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 128 HVRVRFGHEVTALTQ-DDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred CcEEEcCCEEEEEEE-cCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 589999999999998 7888887764 46 46899999998887754
No 155
>PRK07121 hypothetical protein; Validated
Probab=75.94 E-value=8.1 Score=39.78 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEe-CCCc--EEEc-CEEEEcCCccc
Q psy7654 43 GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTC-ADGS--QYSA-DKVLITVSLGV 107 (373)
Q Consensus 43 G~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~-~~G~--~~~a-d~VIvtiP~~~ 107 (373)
+...+.+.|.+.+. +.|++|+++++|++|..+.+++|. |.. .+++ ++.+ +.||+|+--..
T Consensus 175 ~g~~~~~~L~~~~~-----~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 175 GGAMLMDPLAKRAA-----ALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred chHHHHHHHHHHHH-----hCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 35678888888776 668999999999999873234442 332 2332 4678 99999988543
No 156
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=75.90 E-value=7.2 Score=39.76 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC-cEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG-SQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G-~~~~ad~VIvtiP~~ 106 (373)
..+.+.+.+.+. +.|.+|+++++|++|+. .+..+.+...++ .++.+|.||+|+...
T Consensus 211 ~e~~~~l~~~L~-----~~GI~i~~~~~V~~i~~-~~~~v~~~~~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 211 EDIAHILREKLE-----NDGVKIFTGAALKGLNS-YKKQALFEYEGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred HHHHHHHHHHHH-----HCCCEEEECCEEEEEEE-cCCEEEEEECCceEEEEeCEEEEecCCc
Confidence 345555666665 56799999999999987 555565554322 368999999998753
No 157
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=75.27 E-value=6.7 Score=40.43 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC---cEEEcCEEEEcCCc
Q psy7654 47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG---SQYSADKVLITVSL 105 (373)
Q Consensus 47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G---~~~~ad~VIvtiP~ 105 (373)
+.+.+.+.+. +.|.+|++++.|++|.. .++++.|+..++ +++.+|.||+++..
T Consensus 222 ~~~~l~~~L~-----~~gV~i~~~~~v~~v~~-~~~~~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 222 CANKVGEHME-----EHGVKFKRQFVPIKVEQ-IEAKVKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred HHHHHHHHHH-----HcCCEEEeCceEEEEEE-cCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence 3444555554 55789999999999987 566666655444 37899999999875
No 158
>KOG1439|consensus
Probab=75.06 E-value=10 Score=38.08 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=34.3
Q ss_pred eeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE
Q psy7654 37 TVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL 85 (373)
Q Consensus 37 ~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~ 85 (373)
-.++..|.+.|++.++.... -.|+...||+++.+|.. ..++..
T Consensus 224 ylyP~yGlgEL~QgFaRlsA-----vyGgTYMLn~pi~ei~~-~~~gk~ 266 (440)
T KOG1439|consen 224 YLYPLYGLGELPQGFARLSA-----VYGGTYMLNKPIDEINE-TKNGKV 266 (440)
T ss_pred ceecccCcchhhHHHHHHhh-----ccCceeecCCceeeeec-cCCccE
Confidence 34678999999999997654 56899999999999998 444433
No 159
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=74.84 E-value=6.8 Score=40.07 Aligned_cols=55 Identities=29% Similarity=0.344 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC---C--CcEEEcCEEEEcCCcc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA---D--GSQYSADKVLITVSLG 106 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~---~--G~~~~ad~VIvtiP~~ 106 (373)
.+.+.+.+.+. +.|.+|++++.|++|+. .++++.+... + ++++.+|.||+++...
T Consensus 216 ~~~~~l~~~l~-----~~gV~i~~~~~V~~i~~-~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 216 ETAKTLQKALT-----KQGMKFKLGSKVTGATA-GADGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHH-----hcCCEEEECcEEEEEEE-cCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 35555666665 56799999999999987 5566654432 2 3568999999998653
No 160
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=74.23 E-value=8.3 Score=42.75 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=35.8
Q ss_pred CCCceEEcCCceEEEEecC-CCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWED-ANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~-~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
++|.+|++++.|++|..+. +....|...+|+++.+|.||+++...
T Consensus 199 ~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 199 SMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred HCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence 5679999999999998622 22356777889899999999999754
No 161
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=73.66 E-value=5.4 Score=42.04 Aligned_cols=84 Identities=18% Similarity=0.208 Sum_probs=53.4
Q ss_pred hhcchhhhhhhhc-----cC--Ccce-eee-cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEec-CCC-c-E-
Q psy7654 18 FETSAKRYNSFVT-----HE--GCED-TVW-KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE-DAN-G-V- 84 (373)
Q Consensus 18 ~~~S~~~~~~~~~-----~~--g~~~-~~~-~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~-~~~-~-v- 84 (373)
..+||..+..|+. .. ++.. +.+ .-.=++.|+..|.+.|. ++|++|++|++|++|..+ +++ + |
T Consensus 190 ~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le-----~~GV~f~~~t~VtdL~~~~d~~~~~Vt 264 (576)
T PRK13977 190 KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLE-----DHGVDFQYGTKVTDIDFDITGGKKTAT 264 (576)
T ss_pred hhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHH-----hCCCEEEeCCEEEEEEEcCCCCceEEE
Confidence 6688888877662 11 1111 111 12236899999999998 789999999999999983 122 2 3
Q ss_pred EEEeC-CC--cE---EEcCEEEEcCCcc
Q psy7654 85 LVTCA-DG--SQ---YSADKVLITVSLG 106 (373)
Q Consensus 85 ~v~~~-~G--~~---~~ad~VIvtiP~~ 106 (373)
.|... +| ++ ...|.||+|.---
T Consensus 265 gI~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 265 AIHLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred EEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence 23332 22 22 3688999987654
No 162
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=72.93 E-value=8.5 Score=38.19 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe-CCCc--EEEcCEEEEcCCccccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC-ADGS--QYSADKVLITVSLGVFK 109 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~-~~G~--~~~ad~VIvtiP~~~l~ 109 (373)
..+.+.|.+... +.|++++++++|++|+..+++++.|+. .+|+ ++++|.||-|=-....-
T Consensus 103 ~~l~~~Ll~~a~-----~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 103 TEVTRDLMAARL-----AAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred HHHHHHHHHHHH-----hCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCch
Confidence 455666766554 457899999999999863455566665 3563 68899999888777543
No 163
>KOG0685|consensus
Probab=72.74 E-value=1.8 Score=44.12 Aligned_cols=30 Identities=40% Similarity=1.016 Sum_probs=25.3
Q ss_pred ccccccccceeecCCCCCCCCCCCCCCccc
Q psy7654 181 SLFLGTVDKVFVRFPQKWWPDDVRGYNFFW 210 (373)
Q Consensus 181 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~ 210 (373)
.+-+|+++|||+||++.|||++-.+..+||
T Consensus 309 ~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw 338 (498)
T KOG0685|consen 309 RLGFGTVNKIFLEFEEPFWPSDWNGIQLLW 338 (498)
T ss_pred hccCCccceEEEEccCCCCCCCCceeEEEE
Confidence 377999999999999999999877665544
No 164
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=71.79 E-value=4.5 Score=38.60 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe--C-CC--cEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC--A-DG--SQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~--~-~G--~~~~ad~VIvtiP~~~l 108 (373)
..|-+.|.+.+. +.|++|+++++|+++.. +++++.+.. . +| ++++||.||-|=-....
T Consensus 111 ~~l~~~L~~~~~-----~~gv~i~~~~~v~~~~~-d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 111 PELDRALREEAE-----ERGVDIRFGTRVVSIEQ-DDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHH-----HHTEEEEESEEEEEEEE-ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHHhhhhhhh-----hhhhhheeeeecccccc-cccccccccccccCCceeEEEEeeeecccCcccc
Confidence 456666766665 45689999999999998 677765443 2 34 36899999999877753
No 165
>PRK07538 hypothetical protein; Provisional
Probab=71.79 E-value=9.1 Score=38.25 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEeCCC-----cEEEcCEEEEcCCcccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTCADG-----SQYSADKVLITVSLGVF 108 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~~~G-----~~~~ad~VIvtiP~~~l 108 (373)
..|-+.|.+.+.+ ++| ..|+++++|++|.. +++++.+...++ +++.||.||-|--....
T Consensus 102 ~~l~~~L~~~~~~----~~g~~~i~~~~~v~~~~~-~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 102 GELQMLLLDAVRE----RLGPDAVRTGHRVVGFEQ-DADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHHHHHHHh----hcCCcEEEcCCEEEEEEe-cCCceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence 3455556555431 234 46999999999998 666665554332 47899999999887653
No 166
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=71.34 E-value=9.9 Score=38.53 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
.+.+.+.+.+. +.|.+++++++|++|+. . .|++.+|+++.+|.||++++.
T Consensus 190 ~~~~~l~~~l~-----~~gI~i~~~~~v~~i~~---~--~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 190 DMNQPILDELD-----KREIPYRLNEEIDAING---N--EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred HHHHHHHHHHH-----hcCCEEEECCeEEEEeC---C--EEEECCCCEEEeCEEEECcCC
Confidence 34455556665 56799999999999964 2 355567778999999999876
No 167
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=71.33 E-value=8.5 Score=38.68 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=34.3
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCC-CcEEE--cCEEEEcCCc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCAD-GSQYS--ADKVLITVSL 105 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~-G~~~~--ad~VIvtiP~ 105 (373)
..|.++++++.|++|.. .++.+.+...+ ++++. +|+||+|+-.
T Consensus 56 ~~gv~~~~~~~V~~id~-~~~~v~~~~~~~~~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 56 KRGIDVKTNHEVIEVND-ERQTVVVRNNKTNETYEESYDYLILSPGA 101 (427)
T ss_pred hcCCeEEecCEEEEEEC-CCCEEEEEECCCCCEEecCCCEEEECCCC
Confidence 34578999999999998 67777776543 45777 9999999986
No 168
>PRK11445 putative oxidoreductase; Provisional
Probab=71.32 E-value=14 Score=36.06 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=36.1
Q ss_pred CCceEEcCCceEEEEecCCCcEEEEe-CCCc--EEEcCEEEEcCCcccc
Q psy7654 63 LGKKLLLNKEVTKINWEDANGVLVTC-ADGS--QYSADKVLITVSLGVF 108 (373)
Q Consensus 63 ~G~~I~ln~~V~~I~~~~~~~v~v~~-~~G~--~~~ad~VIvtiP~~~l 108 (373)
.|+++++++.|++|.. .++++.|+. .+|+ ++++|.||.|.-....
T Consensus 111 ~gv~v~~~~~v~~i~~-~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 111 ASVEVYHNSLCRKIWR-EDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cCCEEEcCCEEEEEEE-cCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 3579999999999998 677887775 4564 6899999999887643
No 169
>PLN02697 lycopene epsilon cyclase
Probab=71.21 E-value=11 Score=39.49 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..|.+.|.+.+. +.|+++ ++++|++|.. .++++. +.+.+|.++.|+.||.|.-...
T Consensus 192 ~~L~~~Ll~~a~-----~~GV~~-~~~~V~~I~~-~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 192 TLLHEELLRRCV-----ESGVSY-LSSKVDRITE-ASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHH-----hcCCEE-EeeEEEEEEE-cCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 356677777665 456777 7889999998 666654 4556778899999999998876
No 170
>PTZ00058 glutathione reductase; Provisional
Probab=70.88 E-value=12 Score=39.45 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC-CcEEEcCEEEEcCCc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD-GSQYSADKVLITVSL 105 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~-G~~~~ad~VIvtiP~ 105 (373)
.+.+.+.+.+. +.|.+|++++.|.+|+...++++.+...+ ++++.+|.||+++..
T Consensus 279 ~i~~~l~~~L~-----~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 279 TIINELENDMK-----KNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred HHHHHHHHHHH-----HCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCC
Confidence 44555556665 45789999999999987223356555434 457899999999764
No 171
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=70.58 E-value=10 Score=40.08 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeC-CCc--EEEc-CEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCA-DGS--QYSA-DKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~-~G~--~~~a-d~VIvtiP~~~ 107 (373)
..|+.+|.+.+. ++|++|+.+++|++|.. ++++|. |... +|+ ++.+ +.||+|+-...
T Consensus 221 ~~l~~aL~~~~~-----~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 221 NALIGRLLYSLR-----ARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred HHHHHHHHHHHH-----hCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence 367888888776 67899999999999987 456542 3332 343 4565 68999887654
No 172
>PRK06126 hypothetical protein; Provisional
Probab=70.41 E-value=9.3 Score=39.79 Aligned_cols=44 Identities=25% Similarity=0.260 Sum_probs=34.5
Q ss_pred CceEEcCCceEEEEecCCCcEEEEe---CCCc--EEEcCEEEEcCCcccc
Q psy7654 64 GKKLLLNKEVTKINWEDANGVLVTC---ADGS--QYSADKVLITVSLGVF 108 (373)
Q Consensus 64 G~~I~ln~~V~~I~~~~~~~v~v~~---~~G~--~~~ad~VIvtiP~~~l 108 (373)
|.+|+++++|++|.. ++++|.++. .+|+ ++.+|+||.|--....
T Consensus 141 ~v~i~~~~~v~~i~~-~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 141 GVTLRYGHRLTDFEQ-DADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred CceEEeccEEEEEEE-CCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 479999999999998 677776654 3353 6799999999887753
No 173
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=69.58 E-value=13 Score=39.09 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE----EEeCCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL----VTCADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~----v~~~~G~--~~~ad~VIvtiP~~ 106 (373)
..|++.|.+.+. +.|++|..++.|++|.. ++++|. +...+|+ .+.+++||+|+--.
T Consensus 135 ~~i~~~L~~~~~-----~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 135 HAILHELVNNLR-----RYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHHh-----hCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 568888888776 55789999999999987 555542 2334554 57899999998774
No 174
>PRK06185 hypothetical protein; Provisional
Probab=69.55 E-value=14 Score=36.62 Aligned_cols=58 Identities=21% Similarity=0.156 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE---EEEeCCCc-EEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV---LVTCADGS-QYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v---~v~~~~G~-~~~ad~VIvtiP~~~ 107 (373)
..+.+.|.+.+.. ..|.+++.+++|++|.. +++++ .+...+|+ ++.+|.||.|--...
T Consensus 108 ~~l~~~L~~~~~~----~~~v~i~~~~~v~~~~~-~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 108 WDFLDFLAEEASA----YPNFTLRMGAEVTGLIE-EGGRVTGVRARTPDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred HHHHHHHHHHHhh----CCCcEEEeCCEEEEEEE-eCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence 4566667665542 23578999999999998 56654 34445664 789999999987764
No 175
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=68.72 E-value=14 Score=37.86 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCCC--cEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCADG--SQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~G--~~~~ad~VIvtiP~~ 106 (373)
..+.+.+.+.+. +.|.+|++++.|++|+...++++. +.+.+| +++.+|.||+|+...
T Consensus 221 ~~~~~~l~~~l~-----~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 221 AELSKEVARLLK-----KLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHHHHHHHHH-----hcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 345555555565 567999999999999851134443 344455 368999999998764
No 176
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=68.68 E-value=11 Score=38.14 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=34.8
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEe-CCCcEEE--cCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTC-ADGSQYS--ADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~-~~G~~~~--ad~VIvtiP~~ 106 (373)
..|.++++++.|++|.. +++.|.+.. .+|+++. +|++|+|+-..
T Consensus 68 ~~gv~~~~~~~V~~id~-~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 68 KSGIDVKTEHEVVKVDA-KNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred HCCCeEEecCEEEEEEC-CCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 34688999999999998 677777765 2355666 99999999874
No 177
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=67.57 E-value=5.6 Score=39.76 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=30.9
Q ss_pred CceEEEeccccCCCC-cc--hhhHHHHHHHHHHHHHHhhC
Q psy7654 334 KQVLLFAGEASNEHQ-YG--TVNGAVETGWREADRILKSD 370 (373)
Q Consensus 334 ~~~i~fAGd~~s~~~-~g--~veGA~~SG~~AA~~i~~~~ 370 (373)
.|+||||||-+...+ .| -.+-|..||..|++.+...|
T Consensus 336 ~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 336 RPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred CCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 358999999998765 23 78999999999999988765
No 178
>PLN02546 glutathione reductase
Probab=67.17 E-value=14 Score=38.94 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=33.0
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
+.|.+|++++.|.+|....++.+.+.+.+++...+|.||+++...
T Consensus 305 ~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 305 LRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred HCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccc
Confidence 567999999999999873344466666555444589999988654
No 179
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=66.40 E-value=14 Score=39.00 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEe-CCCc--EEEcC-EEEEcCCccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTC-ADGS--QYSAD-KVLITVSLGV 107 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~-~~G~--~~~ad-~VIvtiP~~~ 107 (373)
...|+..|.+.+. ..|++|++|++|++|..+.+++|. |.. .+|+ ++.++ .||+|+---.
T Consensus 212 g~~~~~~l~~~~~-----~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 212 GQSLVARLRLALK-----DAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred cHHHHHHHHHHHH-----hCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 4556666766665 567899999999999983345542 322 2443 36787 6999886543
No 180
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=66.38 E-value=14 Score=38.72 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-E---EeCCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-V---TCADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v---~~~~G~--~~~ad~VIvtiP~~ 106 (373)
..|...|.+.+. +.|++|..+++|++|.. ++++|. | ...+|+ .+.++.||+|+--.
T Consensus 129 ~~i~~~L~~~~~-----~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 129 HALLHTLYEQCL-----KLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHH-----HcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 357777777665 45789999999999987 566542 2 224564 57899999999864
No 181
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=66.06 E-value=17 Score=38.93 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecC-CCcE-EEEe---CCCc--EEEcCEEEEcCCccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED-ANGV-LVTC---ADGS--QYSADKVLITVSLGV 107 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~-~~~v-~v~~---~~G~--~~~ad~VIvtiP~~~ 107 (373)
-..|..+|++... +.|++|+.+++|++|..+. ++++ .|.. .+|+ ++.++.||+|.-++.
T Consensus 231 p~rl~~al~~~A~-----~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAA-----LAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHH-----hCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 4577888887776 6789999999999998732 3443 2332 2444 579999999999874
No 182
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=66.04 E-value=14 Score=36.72 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC-CCc--EEEcCEEEEcCCcccc
Q psy7654 43 GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA-DGS--QYSADKVLITVSLGVF 108 (373)
Q Consensus 43 G~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~-~G~--~~~ad~VIvtiP~~~l 108 (373)
|...|...|.+.+. +.|..++++++++++...+++.+.|+.. +|+ ++++|.||-|=-....
T Consensus 101 ~~~~l~~~L~~~~~-----~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 101 GQTEVTRDLMEARE-----AAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred CHHHHHHHHHHHHH-----hcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence 45567777777665 4568999999998886534556666664 664 6889999988776643
No 183
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=66.01 E-value=14 Score=38.76 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEe-CCCc--EEEcC-EEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTC-ADGS--QYSAD-KVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~-~~G~--~~~ad-~VIvtiP~~~ 107 (373)
..|+..|.+.+. +.|++|+++++|++|.. ++++|. |.. .+|+ .+.++ .||+|+---.
T Consensus 208 ~~l~~~l~~~~~-----~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAAL-----AAGVPLWTNTPLTELIV-EDGRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-eCCEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 567788877776 66899999999999998 556542 322 2443 36774 7999886544
No 184
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=65.53 E-value=16 Score=38.38 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE---E-EeCCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL---V-TCADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~---v-~~~~G~--~~~ad~VIvtiP~~ 106 (373)
..|+++|.+.+. +.|++|..+++|++|.. ++++|. + ...+|+ .+.|++||+|+---
T Consensus 119 ~~i~~~L~~~~~-----~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 119 HAILHTLYQQNL-----KADTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred HHHHHHHHHHHH-----hCCCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence 468888888776 56789999999999987 555542 2 234554 46899999998764
No 185
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=65.22 E-value=7.1 Score=36.58 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=30.3
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD 370 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~ 370 (373)
+.++||.+||.... .+..+.-|+..|..||..|.+.|
T Consensus 264 ~~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 264 SVPGVFAAGDVRDK-GYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred CCCCEEEeecccCc-chhhhhhhhhhHHHHHHHHHhhC
Confidence 45799999998763 34568889999999999998764
No 186
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=65.09 E-value=15 Score=36.55 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=34.6
Q ss_pred CCCceEEcCCceEEEEecCCCcEEE-EeCCCcEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLV-TCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v-~~~~G~~~~ad~VIvtiP~~ 106 (373)
+.|.+++.+++|+.+.. +++++.+ ...++.+++++.||.|--++
T Consensus 107 ~aGae~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 107 EAGAELYPGTRVTGVIR-EDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred HcCCEEEeceEEEEEEE-eCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 56799999999999999 5655544 44444689999999999765
No 187
>PRK12831 putative oxidoreductase; Provisional
Probab=63.62 E-value=8.5 Score=39.47 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.++||.|||...+ +..+.-|+..|.+||..|.+.|.
T Consensus 425 s~pgVfAaGD~~~g--~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 425 SKEGVFAGGDAVTG--AATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CCCCEEEeCCCCCC--chHHHHHHHHHHHHHHHHHHHhc
Confidence 44689999998764 56889999999999999998875
No 188
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=63.50 E-value=14 Score=36.81 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=32.5
Q ss_pred CCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 63 ~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
.|.++++++.|++|.. ... .|.+.+|+++.+|++|+|+-..
T Consensus 71 ~~i~~~~g~~V~~id~-~~~--~v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 71 NNVHLHSGVTIKTLGR-DTR--ELVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred CCCEEEcCCEEEEEEC-CCC--EEEECCCCEEEcCEEEEccCCC
Confidence 3578999999999987 443 3455677889999999999764
No 189
>PRK08401 L-aspartate oxidase; Provisional
Probab=63.09 E-value=17 Score=37.30 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCCCcEEEcCEEEEcCCccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
-..+.+.|.+.+. +.|+++..+ .|+.|.. ++++|. |.. +|+.+.++.||+|+--..
T Consensus 119 G~~i~~~L~~~~~-----~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 119 GKHIIKILYKHAR-----ELGVNFIRG-FAEELAI-KNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred hHHHHHHHHHHHH-----hcCCEEEEe-EeEEEEe-eCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 3568888888776 567888765 7888877 556653 444 556789999999988754
No 190
>PRK12839 hypothetical protein; Provisional
Probab=62.52 E-value=22 Score=37.60 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE---EEEeCCCc-EE-EcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV---LVTCADGS-QY-SADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v---~v~~~~G~-~~-~ad~VIvtiP~~ 106 (373)
..|+..|.+.+. +.|++|+.+++|++|..+++++| .+...+|+ ++ .++.||+|+--.
T Consensus 214 ~~l~~~L~~~a~-----~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf 275 (572)
T PRK12839 214 TALTGRLLRSAD-----DLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGF 275 (572)
T ss_pred HHHHHHHHHHHH-----HCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCc
Confidence 456777777765 66899999999999986334443 33444553 23 458999988554
No 191
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=62.45 E-value=12 Score=41.08 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=34.0
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
+.|.+++++++|++|.. ... .|.+.+|+++.+|++|+|+-..
T Consensus 66 ~~gv~~~~g~~V~~Id~-~~k--~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 66 KHGITLYTGETVIQIDT-DQK--QVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred HCCCEEEcCCeEEEEEC-CCC--EEEECCCcEeeCCEEEECCCCC
Confidence 35689999999999987 433 4666778889999999999863
No 192
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=62.37 E-value=16 Score=37.57 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCC-C--cEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCAD-G--SQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~-G--~~~~ad~VIvtiP~~~ 107 (373)
..|.+.|.+.+.+ ..|.+|+.++.|++|.. +++++. |...+ + ..+.++.||+|+--..
T Consensus 128 ~~l~~~L~~~~~~----~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALN----HPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHh----cCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4677888877752 24689999999999987 555543 33322 3 3578999999998754
No 193
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=62.11 E-value=14 Score=36.34 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=31.4
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
+.|.+++++++|++|.. .... |++ +++++.+|+||+|+-..
T Consensus 70 ~~gv~~~~~~~V~~id~-~~~~--v~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 70 QFNLRLFPHTWVTDIDA-EAQV--VKS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred hCCCEEECCCEEEEEEC-CCCE--EEE-CCeEEeCCEEEECCCCC
Confidence 34689999999999987 4443 334 45689999999999863
No 194
>PRK07804 L-aspartate oxidase; Provisional
Probab=61.76 E-value=18 Score=37.85 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC-Cc---EEEE-----eCCC-cEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA-NG---VLVT-----CADG-SQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~-~~---v~v~-----~~~G-~~~~ad~VIvtiP~~ 106 (373)
..|.+.|.+.+. +.|++|+.++.|++|.. ++ ++ +.+. ..++ ..+.++.||+|+--.
T Consensus 144 ~~i~~~L~~~~~-----~~gV~i~~~~~v~~Li~-~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 144 AEVQRALDAAVR-----ADPLDIREHALALDLLT-DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred HHHHHHHHHHHH-----hCCCEEEECeEeeeeEE-cCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 568888888775 56789999999999987 44 33 3333 1233 357899999998764
No 195
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=61.41 E-value=11 Score=36.89 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=31.6
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
..|.+++.+ +|++|.. .++ +|.+.+|+++.+|++|+|+-..
T Consensus 66 ~~gv~~~~~-~v~~id~-~~~--~V~~~~g~~~~yD~LviAtG~~ 106 (364)
T TIGR03169 66 QAGARFVIA-EATGIDP-DRR--KVLLANRPPLSYDVLSLDVGST 106 (364)
T ss_pred hcCCEEEEE-EEEEEec-ccC--EEEECCCCcccccEEEEccCCC
Confidence 346788775 8999987 454 4666778789999999999764
No 196
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=61.36 E-value=20 Score=33.69 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEE-EEeC-----------CCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVL-VTCA-----------DGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~-v~~~-----------~G~~~~ad~VIvtiP~~~ 107 (373)
..+...|.+++. +.|++|+++++|++|.. .++ ++. +... +..++.++.||.|+-...
T Consensus 104 ~~l~~~L~~~A~-----~~Gv~I~~~t~V~dl~~-~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 104 VEAAAKLAAAAI-----DAGAKIFNGVSVEDVIL-REDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHH-----HcCCEEEcCceeceeeE-eCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 577788887765 67899999999999987 444 432 2211 124689999999987643
No 197
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=61.34 E-value=21 Score=37.31 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EE-E--Ee-CCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VL-V--TC-ADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~-v--~~-~~G~--~~~ad~VIvtiP~~ 106 (373)
..+.+.|.+.+. +.|++|+++++|++|.. ++++ |. + .. .+|+ .+.|+.||+|+--.
T Consensus 134 ~~i~~~L~~~~~-----~~gv~i~~~t~v~~Li~-~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLI-----KERIKILEEVMAIKLIV-DENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHh-----cCCCEEEeCeEeeeeEE-eCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 567788887776 56789999999999987 4443 42 2 22 4554 47899999998764
No 198
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=60.75 E-value=17 Score=36.67 Aligned_cols=52 Identities=27% Similarity=0.429 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCc-EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS-QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~-~~~ad~VIvtiP~~ 106 (373)
.+|.+...+.|. ++|++|++|++|++|+. ++|.+ .+|+ ++.++.+|=|.-..
T Consensus 209 ~~l~~~a~~~L~-----~~GV~v~l~~~Vt~v~~---~~v~~--~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 209 PKLSKYAERALE-----KLGVEVLLGTPVTEVTP---DGVTL--KDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred HHHHHHHHHHHH-----HCCCEEEcCCceEEECC---CcEEE--ccCCeeEecCEEEEcCCCc
Confidence 344444444555 67899999999999965 45444 4554 59999999887653
No 199
>PRK07512 L-aspartate oxidase; Provisional
Probab=59.93 E-value=17 Score=37.83 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeC-CCc--EEEcCEEEEcCCcc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCA-DGS--QYSADKVLITVSLG 106 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~-~G~--~~~ad~VIvtiP~~ 106 (373)
-..|+++|.+.+.+ ..|++|+.+++|++|.. ++++|. |... ++. ++.++.||+|+--.
T Consensus 135 G~~l~~~L~~~~~~----~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 135 GAAIMRALIAAVRA----TPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHHh----CCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 35688888877752 23689999999999987 455442 3322 232 57899999998774
No 200
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=59.76 E-value=26 Score=36.82 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEe-CCCc--EEEcC-EEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTC-ADGS--QYSAD-KVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~-~~G~--~~~ad-~VIvtiP~~ 106 (373)
..+...|.+.+. +.|++|+++++|++|.. ++++|. |.. .+|+ ++.++ .||+|+.--
T Consensus 208 ~~~~~~L~~~~~-----~~gv~v~~~t~v~~l~~-~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~ 268 (557)
T PRK07843 208 QALAAGLRIGLQ-----RAGVPVLLNTPLTDLYV-EDGRVTGVHAAESGEPQLIRARRGVILASGGF 268 (557)
T ss_pred HHHHHHHHHHHH-----cCCCEEEeCCEEEEEEE-eCCEEEEEEEEeCCcEEEEEeceeEEEccCCc
Confidence 456777777776 56799999999999998 556543 333 2443 46786 699976643
No 201
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=59.76 E-value=32 Score=34.56 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=41.2
Q ss_pred cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCc
Q psy7654 40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~ 105 (373)
.+.-+++.+...++..+. .+| ....|++|.. ++++| .|.+.+|..+.+|.||+|+-+
T Consensus 93 Dr~~y~~~~~~~l~~~~n-------l~i-~~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 93 DRDKYSRAMREKLESHPN-------LTI-IQGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp -HHHHHHHHHHHHHTSTT-------EEE-EES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred cHHHHHHHHHHHHhcCCC-------eEE-EEcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 366677777666665442 455 4679999998 66665 588899999999999999988
No 202
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=59.58 E-value=12 Score=38.20 Aligned_cols=36 Identities=22% Similarity=0.096 Sum_probs=30.3
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD 370 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~ 370 (373)
+.++||.+||.+.+ +..+.-|+..|..||..|.+.|
T Consensus 414 s~~~VfA~GD~~~g--~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 414 SIPGVFAGGDIILG--AATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCCCEEEecCCCCC--cHHHHHHHHHHHHHHHHHHhhC
Confidence 44689999998753 5678899999999999998865
No 203
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=59.16 E-value=11 Score=37.07 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=28.8
Q ss_pred ceEEcCCceEEEEecCCCcEEEEeCC---C--cEEEcCEEEEcCC
Q psy7654 65 KKLLLNKEVTKINWEDANGVLVTCAD---G--SQYSADKVLITVS 104 (373)
Q Consensus 65 ~~I~ln~~V~~I~~~~~~~v~v~~~~---G--~~~~ad~VIvtiP 104 (373)
.+|+-++.|++++...+++|++++.+ | .++.+|+||+|+-
T Consensus 294 ~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred eEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 67999999999999433588887754 2 4579999999984
No 204
>PRK08275 putative oxidoreductase; Provisional
Probab=59.02 E-value=24 Score=36.96 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecC-CCcEE-E---EeCCCc--EEEcCEEEEcCCcc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED-ANGVL-V---TCADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~-~~~v~-v---~~~~G~--~~~ad~VIvtiP~~ 106 (373)
.+.+.|.+.+. +.|++|+.++.|++|.. + ++++. | ...+|+ .+.++.||+|+--.
T Consensus 138 ~i~~~L~~~~~-----~~gv~i~~~~~v~~Li~-~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 138 DIKKVLYRQLK-----RARVLITNRIMATRLLT-DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHH-----HCCCEEEcceEEEEEEE-cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 57777877765 56789999999999987 4 44432 2 234554 47899999998764
No 205
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=58.98 E-value=18 Score=36.63 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=33.5
Q ss_pred CCceEEcCCceEEEEecCCCcEEEEeCC-Cc--EEEcCEEEEcCCcc
Q psy7654 63 LGKKLLLNKEVTKINWEDANGVLVTCAD-GS--QYSADKVLITVSLG 106 (373)
Q Consensus 63 ~G~~I~ln~~V~~I~~~~~~~v~v~~~~-G~--~~~ad~VIvtiP~~ 106 (373)
.|.+++++++|++|.. .++.|.+...+ ++ ++.+|++|+|+-..
T Consensus 71 ~~i~v~~~~~V~~Id~-~~~~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 71 KQITVKTYHEVIAIND-ERQTVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred CCCEEEeCCEEEEEEC-CCCEEEEEECCCCcEEeeecCEEEECCCCC
Confidence 4578999999999998 67777777643 23 35899999998764
No 206
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=58.71 E-value=12 Score=40.25 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=32.0
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~ 372 (373)
+.++||-|||...+ +..+.-|+..|+.||..|.+.|..
T Consensus 616 s~~gVfAaGD~~~g--~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 616 SNPKIFAGGDAVRG--ADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CCCCEEEcCCcCCC--CcHHHHHHHHHHHHHHHHHHHhCc
Confidence 44689999998754 567899999999999999998763
No 207
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=58.65 E-value=24 Score=37.77 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=36.7
Q ss_pred HHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EE--e-CCCc--EEEcCEEEEcCCcc
Q psy7654 48 LKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VT--C-ADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 48 ~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~--~-~~G~--~~~ad~VIvtiP~~ 106 (373)
.+.|.+.+. +.|++|+.+++|++|.. ++++|. |. . .+|+ .+.|++||+|+---
T Consensus 173 ~~~L~~~~~-----~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 173 YQALSRQIA-----AGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred HHHHHHHHH-----hcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 355555554 45689999999999987 555542 32 2 2453 57899999998763
No 208
>PRK10262 thioredoxin reductase; Provisional
Probab=58.60 E-value=31 Score=33.10 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc---EEEEeCC----CcEEEcCEEEEcCCc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG---VLVTCAD----GSQYSADKVLITVSL 105 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~---v~v~~~~----G~~~~ad~VIvtiP~ 105 (373)
.+.+.+.+.+. +.|.++++++.|++|.. ++.+ +.+.... .+++.+|.||+++..
T Consensus 186 ~~~~~~~~~l~-----~~gV~i~~~~~v~~v~~-~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 186 ILIKRLMDKVE-----NGNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred HHHHHHHhhcc-----CCCeEEEeCCEEEEEEc-CCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 34555666665 56789999999999987 4433 3333221 136899999998865
No 209
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=58.27 E-value=23 Score=37.30 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EE--e-CCCc--EEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VT--C-ADGS--QYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~--~-~~G~--~~~ad~VIvtiP~~~ 107 (373)
..|++.|.+.+. +.|++|..+++|+++.. ++++|. |. . .+|+ .+.+++||+|+---.
T Consensus 136 ~~i~~~L~~~~~-----~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTS-----GLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHH-----hCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 457888887765 45789999999999998 566543 32 2 2343 468999999987643
No 210
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=58.16 E-value=22 Score=34.80 Aligned_cols=56 Identities=27% Similarity=0.338 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE---EEeCCCcEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL---VTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~---v~~~~G~~~~ad~VIvtiP~~ 106 (373)
..+.+.+.+.+. ..|.++++++.|.+|+. ..+... +...++..+.+|.+++++|..
T Consensus 178 ~~~~~~~~~~l~-----~~gi~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 178 PEVAEELAELLE-----KYGVELLLGTKVVGVEG-KGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred HHHHHHHHHHHH-----HCCcEEEeCCceEEEEc-ccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 567777777776 56788999999999998 555433 566677789999999998763
No 211
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=57.46 E-value=12 Score=36.74 Aligned_cols=78 Identities=22% Similarity=0.357 Sum_probs=44.4
Q ss_pred hcchhhhhhhhccCCcceeee-------cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC---cEEEEe
Q psy7654 19 ETSAKRYNSFVTHEGCEDTVW-------KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN---GVLVTC 88 (373)
Q Consensus 19 ~~S~~~~~~~~~~~g~~~~~~-------~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~---~v~v~~ 88 (373)
-.|...|+.|....|...-.+ .+.=+..=.+-.++++. ..++++++|++|+...++ .+.|++
T Consensus 65 P~s~~sflnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~--------~~v~~~~~V~~I~~~~~~~~~~~~V~~ 136 (341)
T PF13434_consen 65 PTSPFSFLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLD--------NQVRYGSEVTSIEPDDDGDEDLFRVTT 136 (341)
T ss_dssp TTSTTSHHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGT--------TTEEESEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCcccHHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCC--------CceEECCEEEEEEEecCCCccEEEEEE
Confidence 355566666654444422111 12223344444455554 459999999999984332 378887
Q ss_pred C----CCcEEEcCEEEEcCC
Q psy7654 89 A----DGSQYSADKVLITVS 104 (373)
Q Consensus 89 ~----~G~~~~ad~VIvtiP 104 (373)
. +++++.|+.||+++.
T Consensus 137 ~~~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 137 RDSDGDGETYRARNVVLATG 156 (341)
T ss_dssp EETTS-EEEEEESEEEE---
T ss_pred eecCCCeeEEEeCeEEECcC
Confidence 3 346789999999987
No 212
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=57.40 E-value=27 Score=37.61 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc---EEEEe-CCCc--EEEcCEEEEcCCcc
Q psy7654 43 GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG---VLVTC-ADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 43 G~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~---v~v~~-~~G~--~~~ad~VIvtiP~~ 106 (373)
+-..|...|.+.+. +.|++|+.+++|++|.. ++++ +.+.. .+|+ .+.|+.||+|+--.
T Consensus 156 tG~~l~~~L~~~~~-----~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~ 219 (657)
T PRK08626 156 TGHTMLYAVDNEAI-----KLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGGY 219 (657)
T ss_pred cHHHHHHHHHHHHH-----hCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcc
Confidence 34467778877765 56899999999999998 5555 33433 4564 35799999998753
No 213
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=57.19 E-value=29 Score=36.80 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EE---eCCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VT---CADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~---~~~G~--~~~ad~VIvtiP~~ 106 (373)
..|+..|.+.+. +.|++|..+++|++|..+++++|. |. ..+|+ .+.+++||+|+--.
T Consensus 149 ~~i~~~L~~~~~-----~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 149 HAILHTLYQQSL-----KHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHHHHHh-----hcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 358888888776 567899999999999872234442 22 34564 56899999998764
No 214
>KOG1399|consensus
Probab=56.93 E-value=35 Score=34.98 Aligned_cols=84 Identities=18% Similarity=0.085 Sum_probs=54.4
Q ss_pred hhhcchhhhhhhhccCCcce--eeec-CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC-CcEEEEeCCC-
Q psy7654 17 WFETSAKRYNSFVTHEGCED--TVWK-KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA-NGVLVTCADG- 91 (373)
Q Consensus 17 ~~~~S~~~~~~~~~~~g~~~--~~~~-~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~-~~v~v~~~~G- 91 (373)
+..-+.+.++.|-.++.... ..++ .+-+-.-.+..|++.. +-..|++++.|.+|.. .. ++|.|.+.++
T Consensus 62 l~tn~pKe~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~------l~~~i~f~~~v~~v~~-~~~gkW~V~~~~~~ 134 (448)
T KOG1399|consen 62 LRTNLPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFD------LLKMINFNTEVVRVDS-IDKGKWRVTTKDNG 134 (448)
T ss_pred hhccCChhhhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhcC------hhhheEecccEEEEee-ccCCceeEEEecCC
Confidence 44556666666666543322 1112 2334445555566553 1147999999999998 66 7899987653
Q ss_pred ---cEEEcCEEEEcCCccc
Q psy7654 92 ---SQYSADKVLITVSLGV 107 (373)
Q Consensus 92 ---~~~~ad~VIvtiP~~~ 107 (373)
+...+|.||||+-...
T Consensus 135 ~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 135 TQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred cceeEEEeeEEEEcccCcC
Confidence 3678999999998773
No 215
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=56.30 E-value=30 Score=35.41 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=31.8
Q ss_pred ceEEcCCceEEEEecCCCcEEEEeCC--C--cEEEcCEEEEcCCcc
Q psy7654 65 KKLLLNKEVTKINWEDANGVLVTCAD--G--SQYSADKVLITVSLG 106 (373)
Q Consensus 65 ~~I~ln~~V~~I~~~~~~~v~v~~~~--G--~~~~ad~VIvtiP~~ 106 (373)
.+|++++.|++|+. .++++.+...+ | +++.+|.||+++...
T Consensus 229 v~i~~~~~v~~i~~-~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 229 FNIMLETKVTAVEA-KEDGIYVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred eEEEcCCEEEEEEE-cCCEEEEEEEeCCCcceEEEeCEEEEeeccc
Confidence 68999999999987 66667665433 2 468999999998764
No 216
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.10 E-value=36 Score=35.93 Aligned_cols=58 Identities=10% Similarity=0.081 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE---EE-EeCCCc--EEEcCEEEEcCCcc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV---LV-TCADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v---~v-~~~~G~--~~~ad~VIvtiP~~ 106 (373)
-..|+.+|.+.+. +.|.+|..+++++++..+++++| .+ ...+|+ .+.+++||+|+--.
T Consensus 125 G~~i~~~L~~~~~-----~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 188 (570)
T PRK05675 125 GHALLHTLYQGNL-----KNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGA 188 (570)
T ss_pred HHHHHHHHHHHHh-----ccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCc
Confidence 3568888888776 56789999999999987224444 22 234564 46899999998764
No 217
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=56.08 E-value=28 Score=32.66 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC--cE-EEEeC-----------CCcEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN--GV-LVTCA-----------DGSQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~--~v-~v~~~-----------~G~~~~ad~VIvtiP~~ 106 (373)
..+.+.|.+.+. ++|++|+.++.|.+|.. .++ ++ -|.+. +..++.++.||.|+...
T Consensus 100 ~el~~~L~~~a~-----e~GV~I~~~t~V~dli~-~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 100 AEFISTLASKAL-----QAGAKIFNGTSVEDLIT-RDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHH-----HcCCEEECCcEEEEEEE-eCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 467777777665 56899999999999987 454 23 22221 12367899999999865
No 218
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=55.66 E-value=30 Score=36.51 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE----EEeCCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL----VTCADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~----v~~~~G~--~~~ad~VIvtiP~~ 106 (373)
..|+++|.+.+.+ ..|.+|+.++.|++|.. .+++|. +...+|+ .+.|+.||+|+--.
T Consensus 137 ~~i~~~L~~~~~~----~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 137 FYIMHTLYSRALR----FDNIHFYDEHFVTSLIV-ENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHHHHh----cCCCEEEECCEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 4477778776642 24689999999999987 555542 2334554 47899999998775
No 219
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=54.81 E-value=14 Score=37.88 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=30.8
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.++||.+||...+ +..+..|+..|..||..|.+.|.
T Consensus 429 s~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 429 SNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHh
Confidence 44689999998763 44788999999999999988764
No 220
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.78 E-value=34 Score=36.13 Aligned_cols=57 Identities=16% Similarity=0.125 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC----CcEE-E---EeCCCc--EEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA----NGVL-V---TCADGS--QYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~----~~v~-v---~~~~G~--~~~ad~VIvtiP~~~ 107 (373)
..|.+.|.+.+. +.|++|..++.|++|.. ++ ++|. + ...+|+ .+.+++||+|+--..
T Consensus 140 ~~i~~~L~~~~~-----~~gv~i~~~~~v~~Li~-~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCV-----KHGVEFFNEFYVLDLLL-TETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHH-----hcCCEEEeCCEEEEEEe-cCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 567888888775 56789999999999987 43 4432 2 224554 478999999987743
No 221
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=54.50 E-value=23 Score=36.07 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=33.2
Q ss_pred ceEEcCCceEEEEecCC-CcEEEEeCCCcEE--EcCEEEEcCCc
Q psy7654 65 KKLLLNKEVTKINWEDA-NGVLVTCADGSQY--SADKVLITVSL 105 (373)
Q Consensus 65 ~~I~ln~~V~~I~~~~~-~~v~v~~~~G~~~--~ad~VIvtiP~ 105 (373)
-.|+++++|+.+.+.++ +.|.|++++|.+. ++|+||+|+-.
T Consensus 99 ~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 99 FQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred eEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 47999999999988433 3699999887654 59999999887
No 222
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=54.28 E-value=40 Score=35.69 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE----EEeCCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL----VTCADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~----v~~~~G~--~~~ad~VIvtiP~~ 106 (373)
..|.++|.+.+.+ ..|.++..++.|++|.. ++++|. +...+|+ .+.|+.||+|+--.
T Consensus 133 ~~i~~~L~~~~~~----~~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 195 (582)
T PRK09231 133 FHMLHTLFQTSLK----YPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGA 195 (582)
T ss_pred HHHHHHHHHHhhc----CCCcEEEeCeEEEEEEE-eCCEEEEEEEEEcCCCcEEEEECCEEEECCCCC
Confidence 4577778776642 22578999999999998 566553 3345663 57899999998753
No 223
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=54.25 E-value=34 Score=36.39 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEE-E---EeCCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVL-V---TCADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~-v---~~~~G~--~~~ad~VIvtiP~~ 106 (373)
..+...|.+.+. +.| ++|+.+++|++|.. ++++|. | ...+|+ ++.++.||+|+--.
T Consensus 132 ~~~~~~L~~~a~-----~~ggV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 132 ESYKPIVAEAAK-----KALGDNVLNRVFITDLLV-DDNRIAGAVGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred HHHHHHHHHHHH-----hcCCCEEEeCCEEEEEEE-eCCEEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence 356677766654 344 89999999999987 455542 2 234553 57899999999864
No 224
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=53.92 E-value=13 Score=39.80 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=31.5
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~ 372 (373)
+.++||.+||...+ +..+.-|+..|++||..|++.|..
T Consensus 599 s~~gVfA~GD~~~g--~~~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 599 HLKKVFAGGDAVHG--ADLVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred CCCCEEEcCCCCCC--chHHHHHHHHHHHHHHHHHHHHhh
Confidence 44689999998754 467899999999999999987753
No 225
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=53.79 E-value=43 Score=33.89 Aligned_cols=53 Identities=23% Similarity=0.159 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEEEEeC--CCcEEEcCEEEEcCCc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVLVTCA--DGSQYSADKVLITVSL 105 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~v~~~--~G~~~~ad~VIvtiP~ 105 (373)
.+.+.+.+.+. +. .+|+++++|.+|+. .++ ++.++.. +++++.+|.||+++..
T Consensus 211 ~~~~~~~~~l~-----~~-I~i~~~~~v~~i~~-~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 211 EVSKQAQKILS-----KE-FKIKLGAKVTSVEK-SGDEKVEELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred HHHHHHHHHHh-----hc-cEEEcCCEEEEEEE-cCCceEEEEEcCCceEEEEeCEEEEccCC
Confidence 34444555554 34 68999999999987 444 5555432 3356899999998765
No 226
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=53.68 E-value=35 Score=33.83 Aligned_cols=49 Identities=22% Similarity=0.389 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
..+-+.+.+.+. ..|+++++|++|. +++|.+ .+|++++|+.||-|.+..
T Consensus 89 ~~f~~~l~~~l~--------~~i~~~~~V~~v~---~~~v~l--~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 89 TRFHEGLLQAFP--------EGVILGRKAVGLD---ADGVDL--APGTRINARSVIDCRGFK 137 (370)
T ss_pred HHHHHHHHHhhc--------ccEEecCEEEEEe---CCEEEE--CCCCEEEeeEEEECCCCC
Confidence 445566666554 3488899999994 344655 578899999999999976
No 227
>KOG2844|consensus
Probab=53.01 E-value=20 Score=38.45 Aligned_cols=58 Identities=17% Similarity=0.132 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
-..+-++|+.... ++|+.|.-|++|++|+..+++.+.|.|.-| .+++.+||-|.-.+.
T Consensus 186 P~~lC~ala~~A~-----~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 186 PAGLCQALARAAS-----ALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHH-----hcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 3567777776665 789999999999999986667778988888 688999999888774
No 228
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=52.81 E-value=32 Score=36.76 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCC---CCCCCC-----ceEEcCCceEEEEecCCCcEE-E---EeCCCc--EEEcCEEEEcCCc
Q psy7654 45 GNVLKLLLKQMPGQ---TPIDLG-----KKLLLNKEVTKINWEDANGVL-V---TCADGS--QYSADKVLITVSL 105 (373)
Q Consensus 45 ~~L~~~L~~~l~~~---~~~~~G-----~~I~ln~~V~~I~~~~~~~v~-v---~~~~G~--~~~ad~VIvtiP~ 105 (373)
..|+++|.+.+.+. -....| ++|..+++|++|.. ++++|. + ...+|+ .+.|++||+|+--
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLK-DGGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEE-ECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 45777887766421 000126 79999999999987 555542 2 234553 5789999999986
No 229
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=52.52 E-value=15 Score=38.51 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=31.1
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.++||.+||...+ +..+..|+..|.+||..|.+.|.
T Consensus 408 s~~~Vfa~GD~~~g--~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 408 GRPGVFAGGDMVPG--PRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred CCCCEEeccCcCCC--chHHHHHHHHHHHHHHHHHHHHc
Confidence 44689999998753 57899999999999999987764
No 230
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=52.16 E-value=40 Score=34.97 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EE-eCCCc--EEEcC-EEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VT-CADGS--QYSAD-KVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~-~~~G~--~~~ad-~VIvtiP~~ 106 (373)
..|+..|.+.+.. ..|.+|+++++|++|.. ++++|. |. ..+|+ ++.++ .||+|+--.
T Consensus 173 ~~l~~~l~~~~~~----~~gv~i~~~t~~~~Li~-~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 173 RALIGRFLAALAR----FPNARLRLNTPLVELVV-EDGRVVGAVVERGGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred HHHHHHHHHHHHh----CCCCEEEeCCEEEEEEe-cCCEEEEEEEEECCcEEEEEeCceEEEeCCCc
Confidence 3577777766542 34789999999999988 566542 22 22443 46786 688887664
No 231
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=51.99 E-value=51 Score=34.34 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=34.1
Q ss_pred CceEEcCCceEEEEecCCCcEEEEe--CCCc-EEEcCEEEEcCCccc
Q psy7654 64 GKKLLLNKEVTKINWEDANGVLVTC--ADGS-QYSADKVLITVSLGV 107 (373)
Q Consensus 64 G~~I~ln~~V~~I~~~~~~~v~v~~--~~G~-~~~ad~VIvtiP~~~ 107 (373)
|.+|+++++|++|+. ++++|.++. .+|. ++.+|.||.|.....
T Consensus 140 ~v~v~~~~~v~~i~~-~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 140 NIDLRWKNKVTGLEQ-HDDGVTLTVETPDGPYTLEADWVIACDGARS 185 (547)
T ss_pred CcEEEeCCEEEEEEE-cCCEEEEEEECCCCcEEEEeCEEEECCCCCc
Confidence 478999999999998 777776654 3453 689999999988764
No 232
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=51.88 E-value=25 Score=38.07 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 42 GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 42 gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
+-.+.|.-.=.+-.. +.|++++.+.+|+.|.+ ... .|+++.|.++.+|.+|+|+-.
T Consensus 56 ~~~edi~l~~~dwy~-----~~~i~L~~~~~v~~idr-~~k--~V~t~~g~~~~YDkLilATGS 111 (793)
T COG1251 56 KTAEDISLNRNDWYE-----ENGITLYTGEKVIQIDR-ANK--VVTTDAGRTVSYDKLIIATGS 111 (793)
T ss_pred ccHHHHhccchhhHH-----HcCcEEEcCCeeEEecc-Ccc--eEEccCCcEeecceeEEecCc
Confidence 335555443333333 55689999999999987 333 477888999999999999765
No 233
>KOG1346|consensus
Probab=51.66 E-value=13 Score=37.64 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=50.3
Q ss_pred cCCcceeeec-CCcHHH-HHHHHHH----hCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCC
Q psy7654 31 HEGCEDTVWK-KGGYGN-VLKLLLK----QMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVS 104 (373)
Q Consensus 31 ~~g~~~~~~~-~gG~~~-L~~~L~~----~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP 104 (373)
.++..-.+|. ++-|+. |++.|++ .+. +-|+.|+-|+.|.++.. +...+.+..++|.+++.|.||+|+-
T Consensus 373 ~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir-----~~GV~V~pna~v~sv~~-~~~nl~lkL~dG~~l~tD~vVvavG 446 (659)
T KOG1346|consen 373 EGVEVHQVFEEKYNMEKILPEYLSQWTIEKIR-----KGGVDVRPNAKVESVRK-CCKNLVLKLSDGSELRTDLVVVAVG 446 (659)
T ss_pred cCcEEEEeecccCChhhhhHHHHHHHHHHHHH-----hcCceeccchhhhhhhh-hccceEEEecCCCeeeeeeEEEEec
Confidence 3344334554 455665 4555543 333 34689999999999999 7888999999999999999999975
Q ss_pred c
Q psy7654 105 L 105 (373)
Q Consensus 105 ~ 105 (373)
.
T Consensus 447 ~ 447 (659)
T KOG1346|consen 447 E 447 (659)
T ss_pred C
Confidence 4
No 234
>PRK10262 thioredoxin reductase; Provisional
Probab=51.33 E-value=42 Score=32.13 Aligned_cols=53 Identities=11% Similarity=0.371 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
.+.+.+.+.+. ..+.+++.+ .|++|+. .++.+.++...+ .+.+|+||+|+-..
T Consensus 64 ~~~~~~~~~~~-----~~~~~~~~~-~v~~v~~-~~~~~~v~~~~~-~~~~d~vilAtG~~ 116 (321)
T PRK10262 64 LLMERMHEHAT-----KFETEIIFD-HINKVDL-QNRPFRLTGDSG-EYTCDALIIATGAS 116 (321)
T ss_pred HHHHHHHHHHH-----HCCCEEEee-EEEEEEe-cCCeEEEEecCC-EEEECEEEECCCCC
Confidence 34555554443 233567666 6788888 677788876554 78999999999875
No 235
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=51.06 E-value=50 Score=35.00 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-E---EeCCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-V---TCADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v---~~~~G~--~~~ad~VIvtiP~~ 106 (373)
..|+..|.+.+. +.|++|..++.|++|...++++|. | ...+|+ .+.++.||+|+--.
T Consensus 143 ~~i~~~L~~~~~-----~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 143 HALLHTLYQQNL-----KNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHHHhh-----hcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 568888888775 457899999999999872244432 2 233554 46799999998764
No 236
>KOG0404|consensus
Probab=50.95 E-value=23 Score=32.99 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
..|.+.|.++.. +.|.+|..+ .|.++.. +..-+.|.++.+ .+.+|+||+|+-...
T Consensus 70 ~~l~d~mrkqs~-----r~Gt~i~tE-tVskv~~-sskpF~l~td~~-~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 70 PELMDKMRKQSE-----RFGTEIITE-TVSKVDL-SSKPFKLWTDAR-PVTADAVILATGASA 124 (322)
T ss_pred HHHHHHHHHHHH-----hhcceeeee-ehhhccc-cCCCeEEEecCC-ceeeeeEEEecccce
Confidence 358888888776 566777665 6888888 777788877554 799999999998854
No 237
>KOG1336|consensus
Probab=50.55 E-value=22 Score=36.39 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=35.4
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
+.|.++++++.|+++.. .... |.+.+|+++.++++|+|+--+.
T Consensus 139 e~gIe~~~~t~v~~~D~-~~K~--l~~~~Ge~~kys~LilATGs~~ 181 (478)
T KOG1336|consen 139 EKGIELILGTSVVKADL-ASKT--LVLGNGETLKYSKLIIATGSSA 181 (478)
T ss_pred hcCceEEEcceeEEeec-cccE--EEeCCCceeecceEEEeecCcc
Confidence 45689999999999998 4443 6677899999999999988743
No 238
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=50.37 E-value=20 Score=36.71 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=30.5
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.++||.+||...+ +..+.-|+..|..||..|.+.|.
T Consensus 430 ~~~gVfa~GD~~~~--~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 430 TNPKIFAGGDAVRG--ADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCEEEECCcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 34689999998754 45778999999999999998764
No 239
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=50.05 E-value=28 Score=38.69 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
..|.+++++++|++|.. .. ..|++.+|+++.+|++|+|+-..
T Consensus 71 ~~gI~~~~g~~V~~Id~-~~--~~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 71 KHGIKVLVGERAITINR-QE--KVIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred hCCCEEEcCCEEEEEeC-CC--cEEEECCCcEEECCEEEECCCCC
Confidence 34689999999999987 33 34566778889999999999863
No 240
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=49.69 E-value=24 Score=35.23 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=44.6
Q ss_pred CCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC-CCcEEEcCEEEE
Q psy7654 32 EGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA-DGSQYSADKVLI 101 (373)
Q Consensus 32 ~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~-~G~~~~ad~VIv 101 (373)
-|....++++-|.+.|.+.++.... -.|+...||+++.+|.. .+. | .+.. ++.+..|.++|.
T Consensus 216 yg~~pyLyp~YGl~El~QGFaRssa-----v~GgtymLn~~i~ein~-tk~-v-~~v~~~~~~~ka~KiI~ 278 (434)
T COG5044 216 YGKSPYLYPRYGLGELSQGFARSSA-----VYGGTYMLNQAIDEINE-TKD-V-ETVDKGSLTQKAGKIIS 278 (434)
T ss_pred cCCCcceeeccCchhhhHHHHHhhh-----ccCceeecCcchhhhcc-ccc-e-eeeecCcceeecCcccC
Confidence 3544455678899999999998665 67899999999999987 454 3 2222 334667777764
No 241
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=49.04 E-value=35 Score=33.76 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=29.3
Q ss_pred eEEEeccccCCCCc---chhhHHHHHHHHHHHHHHhhCC
Q psy7654 336 VLLFAGEASNEHQY---GTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 336 ~i~fAGd~~s~~~~---g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+++++||+-....| +-|.-|+.||..||+.|.+.+.
T Consensus 265 ~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 265 RAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 79999999876543 3588899999999999987653
No 242
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=48.63 E-value=18 Score=40.60 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=31.3
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.++||.|||...+ +..+--|+..|.+||..|.+.|+
T Consensus 591 s~pgVFAaGD~~~G--~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 591 SIKGVYSGGDAARG--GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCCCEEEEEcCCCC--hHHHHHHHHHHHHHHHHHHHHhc
Confidence 44689999998764 45789999999999999998775
No 243
>PRK08071 L-aspartate oxidase; Provisional
Probab=47.97 E-value=43 Score=34.75 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EE--eCCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VT--CADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~--~~~G~--~~~ad~VIvtiP~~ 106 (373)
..+.++|.+.+. .|++|+.+++|++|.. ++++|. +. ..+|+ .+.++.||+|+--.
T Consensus 130 ~~i~~~L~~~~~------~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~ 189 (510)
T PRK08071 130 KNLLEHLLQELV------PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGC 189 (510)
T ss_pred HHHHHHHHHHHh------cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCC
Confidence 457888877663 3689999999999987 555543 33 33443 57899999998653
No 244
>KOG1335|consensus
Probab=47.55 E-value=41 Score=33.89 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=32.3
Q ss_pred CceEEcCCceEEEEecCCCcEEEEeCC---C--cEEEcCEEEEcCCcc
Q psy7654 64 GKKLLLNKEVTKINWEDANGVLVTCAD---G--SQYSADKVLITVSLG 106 (373)
Q Consensus 64 G~~I~ln~~V~~I~~~~~~~v~v~~~~---G--~~~~ad~VIvtiP~~ 106 (373)
|-+++|+++|..+..+.++.|.|+.++ | +++++|.+.+++--.
T Consensus 266 gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence 578999999999999444467666543 3 468999999887654
No 245
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=47.50 E-value=20 Score=36.99 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=30.3
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.++||.|||...+ +..+.-|+..|..||..|.+.|.
T Consensus 443 s~~gVfAaGD~~~g--~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 443 SIPGVFAAGDCRRG--QSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred CCCCEEEeeccCCC--cHHHHHHHHHHHHHHHHHHHHHh
Confidence 44689999998753 45677899999999999988774
No 246
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=47.22 E-value=24 Score=34.51 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.++||.|||.+.. +..+.-|+..|..||..|.+.|-
T Consensus 314 ~~~~vyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 314 SREGVFAAGDVVTG--PSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCCEEEEcccccC--cchHHHHHHHHHHHHHHHHHHHh
Confidence 34689999998653 56899999999999999988764
No 247
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=47.10 E-value=42 Score=35.21 Aligned_cols=54 Identities=26% Similarity=0.437 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
..+.+.+.+.+. ..|.+++ +++|++|.. .++.+.|.+.+| .+.+++||+|+-..
T Consensus 60 ~~l~~~l~~~~~-----~~gv~~~-~~~V~~i~~-~~~~~~V~~~~g-~~~a~~lVlATGa~ 113 (555)
T TIGR03143 60 PELMQEMRQQAQ-----DFGVKFL-QAEVLDVDF-DGDIKTIKTARG-DYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHH-----HcCCEEe-ccEEEEEEe-cCCEEEEEecCC-EEEEeEEEECCCCc
Confidence 456677766554 4567774 789999988 566667777666 68999999999873
No 248
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=47.02 E-value=18 Score=36.27 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=29.9
Q ss_pred CceEEEeccccCCCCc-c--hhhHHHHHHHHHHHHHHhhC
Q psy7654 334 KQVLLFAGEASNEHQY-G--TVNGAVETGWREADRILKSD 370 (373)
Q Consensus 334 ~~~i~fAGd~~s~~~~-g--~veGA~~SG~~AA~~i~~~~ 370 (373)
.|+||||||-+..+++ | -+.-|+.||..|++.+.+.+
T Consensus 368 vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 368 VPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred CCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 3689999999987642 3 67889999999999887754
No 249
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=46.92 E-value=53 Score=34.74 Aligned_cols=57 Identities=19% Similarity=0.079 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE----EEeCCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL----VTCADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~----v~~~~G~--~~~ad~VIvtiP~~ 106 (373)
..|.++|.+.+.+ ..|..+..++.|++|.. ++++|. +...+|+ .+.++.||+|+--.
T Consensus 132 ~~i~~~L~~~~~~----~~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (580)
T TIGR01176 132 FHMLHTLFQTSLT----YPQIMRYDEWFVTDLLV-DDGRVCGLVAIEMAEGRLVTILADAVVLATGGA 194 (580)
T ss_pred HHHHHHHHHHHHh----cCCCEEEeCeEEEEEEe-eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence 5688888876642 23578999999999998 566553 2334663 57899999998664
No 250
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=45.66 E-value=23 Score=36.03 Aligned_cols=37 Identities=22% Similarity=0.103 Sum_probs=30.5
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.++||.+||...+ +..+.-|+..|..||..|.+.|.
T Consensus 416 s~~~VfA~GD~~~~--~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 416 SLPGVFAGGDIVTG--AATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CCCCEEEeCCcCCC--chHHHHHHHHHHHHHHHHHHHHh
Confidence 34689999998743 45788899999999999988764
No 251
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=45.65 E-value=23 Score=38.70 Aligned_cols=39 Identities=21% Similarity=0.067 Sum_probs=32.3
Q ss_pred CCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654 332 QGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~ 372 (373)
++.++||-|||...+ +..+.-|+..|.+||..|.+.|..
T Consensus 713 Ts~~gVfA~GD~~~g--~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 713 SSIPGIYAGGDIVRG--GATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCCCCEEEeCCccCC--cHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345689999998754 567899999999999999988753
No 252
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=45.28 E-value=20 Score=33.66 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=29.8
Q ss_pred CceEEEeccccCCCC----cc-hhhHHHHHHHHHHHHHHhhCCC
Q psy7654 334 KQVLLFAGEASNEHQ----YG-TVNGAVETGWREADRILKSDPA 372 (373)
Q Consensus 334 ~~~i~fAGd~~s~~~----~g-~veGA~~SG~~AA~~i~~~~~~ 372 (373)
.|+||.||-+.+..+ .| .--|=+.||++||+.|++.|+.
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 368999998886542 23 3445678999999999999874
No 253
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=44.94 E-value=25 Score=37.81 Aligned_cols=37 Identities=22% Similarity=0.095 Sum_probs=30.8
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.++||.+||...+ +..+.-|+..|..||..|.+.|.
T Consensus 465 s~pgVfA~GDv~~g--~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 465 SVAGVFAGGDCVTG--ADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred CCCCEEEcCCcCCC--chHHHHHHHHHHHHHHHHHHHHc
Confidence 44689999998754 56788999999999999988764
No 254
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=44.67 E-value=23 Score=33.21 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=29.5
Q ss_pred CCceEEEeccccCCCC----cc-hhhHHHHHHHHHHHHHHhhCC
Q psy7654 333 GKQVLLFAGEASNEHQ----YG-TVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~----~g-~veGA~~SG~~AA~~i~~~~~ 371 (373)
-.|+||.||-+.+..+ .| .--|=+.||++||+.|++.|+
T Consensus 211 ~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 211 VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 3479999999887542 24 344557899999999999874
No 255
>KOG1336|consensus
Probab=44.53 E-value=42 Score=34.40 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=36.7
Q ss_pred CCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
.-|+++.+++.|.+++-+.++. ..|...+|+++.+|-||+-+-..
T Consensus 267 ~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 267 NKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK 312 (478)
T ss_pred hcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc
Confidence 4578999999999999854444 46888999999999999977654
No 256
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=44.53 E-value=17 Score=33.75 Aligned_cols=40 Identities=28% Similarity=0.286 Sum_probs=30.6
Q ss_pred CCceEEEeccccCCCC----cc-hhhHHHHHHHHHHHHHHhhCCC
Q psy7654 333 GKQVLLFAGEASNEHQ----YG-TVNGAVETGWREADRILKSDPA 372 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~----~g-~veGA~~SG~~AA~~i~~~~~~ 372 (373)
-.|+||+||-+.+..+ .| .--|=+.||+.||+.|++.|+.
T Consensus 217 V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 217 VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred ccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 3468999999886542 23 4455679999999999998874
No 257
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=44.44 E-value=59 Score=32.72 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=30.8
Q ss_pred CCceEEEeccccCCC---CcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 333 GKQVLLFAGEASNEH---QYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~---~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.++||-+||..+.. .+....-|+.+|..+|+.|.+.+.
T Consensus 307 ~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 557999999988742 245677899999999999987653
No 258
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=44.14 E-value=56 Score=34.87 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-E---EeCCCc--EEEcCEEEEcCCc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-V---TCADGS--QYSADKVLITVSL 105 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v---~~~~G~--~~~ad~VIvtiP~ 105 (373)
..|...|.+.+. +.|++|..+++|+++....+++|. | ...+|+ .+.|++||+|+--
T Consensus 166 ~~i~~~L~~~a~-----~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 166 HAMLHTLYGQSL-----KYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHH-----hCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 467788887765 567899999999998762244442 2 224554 4689999999944
No 259
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.70 E-value=63 Score=34.24 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE---EEE-eCCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV---LVT-CADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v---~v~-~~~G~--~~~ad~VIvtiP~~ 106 (373)
..|.+.|.+.+. +.|.+|..++.|+++..+++++| .+. ..+|+ .+.++.||+|+--.
T Consensus 148 ~~l~~~L~~~~~-----~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 148 HALLHTLYQQNV-----AAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA 210 (591)
T ss_pred HHHHHHHHHHHH-----hcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence 457888877664 56789999999999987223443 232 23453 46799999998764
No 260
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=43.16 E-value=70 Score=34.50 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=31.5
Q ss_pred CCCceEEcCCceEEEEecCCCc--EEEEeCC-------C--------cEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANG--VLVTCAD-------G--------SQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~--v~v~~~~-------G--------~~~~ad~VIvtiP~~ 106 (373)
+.|.+|++++.|++|+. .++. +.|...+ + +++.+|.||+|+-..
T Consensus 366 ~~GV~I~~~~~V~~I~~-~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 366 SKPVRVHLNTLIEYVRA-GKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred cCCcEEEcCCEEEEEEe-cCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 46789999999999987 4432 5554321 1 268999999987653
No 261
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=42.76 E-value=60 Score=33.16 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=28.2
Q ss_pred CCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 332 QGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
++.++||.+||.+.. +...+-|...|..||..++.
T Consensus 302 Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 302 TSVPGIYAAGDCTGV--LPLASVAAMQGRIAMYHALG 336 (466)
T ss_pred cCCCCEEEEeeccCC--ccchhHHHHHHHHHHHHHcC
Confidence 345789999998754 35688899999999998874
No 262
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=42.55 E-value=63 Score=34.51 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=32.9
Q ss_pred CceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCccc
Q psy7654 64 GKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 64 G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
|.+| +.+.|++|.. +++++ .|.+.+|..+.|+.||+|+-...
T Consensus 115 nV~I-~q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 115 NLDL-FQGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred CcEE-EEeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 3566 5678999987 56665 47888898999999999999754
No 263
>PRK07395 L-aspartate oxidase; Provisional
Probab=42.32 E-value=47 Score=34.90 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC-CcEE-EE-eCCCc--EEEcCEEEEcCCcc
Q psy7654 44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA-NGVL-VT-CADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~-~~v~-v~-~~~G~--~~~ad~VIvtiP~~ 106 (373)
-..|+++|.+.+.+ ..|++|+.+++|++|..+++ ++|. |. ..+|+ .+.++.||+|+--.
T Consensus 133 G~~i~~~L~~~~~~----~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 133 GRAIVTTLTEQVLQ----RPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred hHHHHHHHHHHHhh----cCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 35688888877742 23689999999999987322 4431 22 23553 36899999998873
No 264
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=42.30 E-value=95 Score=33.03 Aligned_cols=60 Identities=20% Similarity=0.091 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE---EEEe-CCCc--EEEcCEEEEcCCc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV---LVTC-ADGS--QYSADKVLITVSL 105 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v---~v~~-~~G~--~~~ad~VIvtiP~ 105 (373)
..++.+|.+.+.+.. ...|++|+.+++|++|..+++++| .+.. .+|+ .+.|+.||+|+--
T Consensus 129 ~~i~~~L~~~~~~~~-~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 129 QQLLLALDSALRRQI-AAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred hHHHHHHHHHHHhhh-ccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 345556654442100 023689999999999987333343 2322 2453 5789999999955
No 265
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=40.92 E-value=30 Score=39.16 Aligned_cols=37 Identities=22% Similarity=0.099 Sum_probs=31.1
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+.++||.|||...+ +..+--|+..|.+||..|.+.|.
T Consensus 719 s~pgVFAaGDv~~G--~~~vv~Ai~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 719 NLPGVFAGGDIVTG--GATVILAMGAGRRAARSIATYLR 755 (1006)
T ss_pred CCCCEEEecCcCCC--ccHHHHHHHHHHHHHHHHHHHHh
Confidence 44689999998754 56889999999999999988764
No 266
>PRK13984 putative oxidoreductase; Provisional
Probab=40.25 E-value=34 Score=36.24 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=29.6
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~ 372 (373)
+.++||.|||.+.+ +. +--|+..|..||..|.+.|..
T Consensus 567 s~~gVfAaGD~~~~--~~-~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 567 SIPWLFAGGDIVHG--PD-IIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred CCCCEEEecCcCCc--hH-HHHHHHHHHHHHHHHHHHhcc
Confidence 44689999998764 33 456999999999999988753
No 267
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=40.19 E-value=72 Score=33.36 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEe---CC--------------C-cEEEcCEEEEcCCcc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTC---AD--------------G-SQYSADKVLITVSLG 106 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~---~~--------------G-~~~~ad~VIvtiP~~ 106 (373)
.|++.|.+.+... ...-|++|+++++++++.. ++++|. |.. .+ + .++.++.||+|+-=-
T Consensus 149 ~~~~~l~~~~~~~-~~~~gv~i~~~t~~~~Li~-~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf 226 (549)
T PRK12834 149 GVVEPFERRVREA-AARGLVRFRFRHRVDELVV-TDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGI 226 (549)
T ss_pred HHHHHHHHHHHHH-HHhCCceEEecCEeeEEEE-eCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCc
Confidence 4667776554210 0012479999999999988 566542 321 11 1 256899999998653
No 268
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=40.13 E-value=62 Score=33.11 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=39.4
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCccc
Q psy7654 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGV 107 (373)
Q Consensus 41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~ 107 (373)
+.-+.++....+. ++|++++.+ .|++|....++.+ .|.+.+|++++||.||=|.-...
T Consensus 153 R~~fd~~L~~~A~--------~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 153 RAKFDQFLRRHAE--------ERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHH--------HTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHHh--------cCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 5666666666655 446898877 4888887333333 68888999999999998888753
No 269
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=39.65 E-value=28 Score=30.34 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=31.4
Q ss_pred CceEEcCCceEEEEecCCCc-----EEE---EeCCCcEEEcCEEEEcCCcc
Q psy7654 64 GKKLLLNKEVTKINWEDANG-----VLV---TCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 64 G~~I~ln~~V~~I~~~~~~~-----v~v---~~~~G~~~~ad~VIvtiP~~ 106 (373)
+.+++++++|.+|.. .... +.+ ...++.++.+|+||+|+-..
T Consensus 72 ~v~~~~~~~v~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 72 GVEIRLNAKVVSIDP-ESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp THEEEHHHTEEEEEE-STTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred eEEEeeccccccccc-cccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 368999999999998 5553 233 23455679999999999953
No 270
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=38.60 E-value=74 Score=34.13 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EE--e-CCCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VT--C-ADGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~--~-~~G~--~~~ad~VIvtiP~~ 106 (373)
..|++.|.+.+. +.|++|..++.|++|..+++++|. |. . .+|+ .+.+++||+|+---
T Consensus 187 ~~i~~~L~~~a~-----~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 187 HAMLHTLYGQAM-----KHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HHHHHHHHHHHH-----hCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 457788877665 457899999999998872245442 22 2 3553 46899999998764
No 271
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=38.09 E-value=73 Score=33.02 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC-C-cE--EEE-eCCCc--EE---EcCEEEEcCCcc
Q psy7654 42 GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA-N-GV--LVT-CADGS--QY---SADKVLITVSLG 106 (373)
Q Consensus 42 gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~-~-~v--~v~-~~~G~--~~---~ad~VIvtiP~~ 106 (373)
.=++.|+.-|.+.|+ +.|+++++|++|+.|.-+.. + ++ .+. ..+|+ ++ .-|.|++|.-.-
T Consensus 204 NQyeSii~Pl~~~L~-----~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 204 NQYESIILPLIRYLK-----SQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred ccHHHHHHHHHHHHH-----HCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 458899999999998 67999999999999987422 2 22 222 24443 22 467888886543
No 272
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=38.08 E-value=88 Score=33.44 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=32.7
Q ss_pred CceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCcccccc
Q psy7654 64 GKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSLGVFKS 110 (373)
Q Consensus 64 G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~~~l~~ 110 (373)
|..++ ...|+++...++++ +.|.+.+|..+.|+.||+|+-...-..
T Consensus 111 gV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g~ 157 (617)
T TIGR00136 111 NLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLRGK 157 (617)
T ss_pred CcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccCCC
Confidence 35665 45788886622444 467888888899999999999875433
No 273
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=37.60 E-value=35 Score=34.46 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=28.9
Q ss_pred eEEEeccccCCCCc-----chhhHHHHHHHHHHHHHHhhCC
Q psy7654 336 VLLFAGEASNEHQY-----GTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 336 ~i~fAGd~~s~~~~-----g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+++++||+.....+ .=|.-|+.||..||+.|++.+.
T Consensus 296 g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~ 336 (428)
T PRK10157 296 GVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMK 336 (428)
T ss_pred CeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHh
Confidence 89999999865422 3477799999999999987654
No 274
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=37.40 E-value=44 Score=37.81 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=30.2
Q ss_pred CceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 334 KQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 334 ~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
.++||.+||... +++.+.-|+..|..||..|+..+.
T Consensus 807 ~pgVFAaGD~a~--Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 807 LTNVYMIGDVQR--GPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CCCEEEEecccc--CchHHHHHHHHHHHHHHHHhhhcC
Confidence 458999999865 367899999999999999987654
No 275
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=37.39 E-value=26 Score=35.37 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.0
Q ss_pred ceEEEeccccCCCCc--c-hhhHHHHHHHHHHH
Q psy7654 335 QVLLFAGEASNEHQY--G-TVNGAVETGWREAD 364 (373)
Q Consensus 335 ~~i~fAGd~~s~~~~--g-~veGA~~SG~~AA~ 364 (373)
|+||||||-+...++ | -++-|+.||..|++
T Consensus 376 ~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 376 PGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp TTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 589999999987642 3 59999999999986
No 276
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=36.96 E-value=65 Score=33.78 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC---CCc--EEEcCEEEEcCCcccccccccccC---C
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA---DGS--QYSADKVLITVSLGVFKSDLITFV---P 117 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~---~G~--~~~ad~VIvtiP~~~l~~~~i~f~---p 117 (373)
+|+-..+.... +.|.+|..-++|+++.+ +++-+-|... +|+ ++.|+.||-|+-+++=+- +... +
T Consensus 165 RLv~~~a~~A~-----~~Ga~il~~~~v~~~~r-e~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i--~~~~~~~~ 236 (532)
T COG0578 165 RLVAANARDAA-----EHGAEILTYTRVESLRR-EGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEI--LEMAGLEQ 236 (532)
T ss_pred HHHHHHHHHHH-----hcccchhhcceeeeeee-cCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHH--HHhhcccC
Confidence 55555554443 66899999999999999 5653344433 344 468999999999986432 1111 1
Q ss_pred CCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCC
Q psy7654 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150 (373)
Q Consensus 118 ~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~ 150 (373)
..+ ..+.+..=++|.+++ +|+..
T Consensus 237 ~~~---------~~vr~skGsHlVv~~-~~~~~ 259 (532)
T COG0578 237 SPH---------IGVRPSKGSHLVVDK-KFPIN 259 (532)
T ss_pred CCC---------ccceeccceEEEecc-cCCCC
Confidence 111 234555567777777 55543
No 277
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=36.53 E-value=45 Score=33.68 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=33.7
Q ss_pred CCCceEEEeccccCCCC----cchhhHHHHHHHHHHHHHHhhCC
Q psy7654 332 QGKQVLLFAGEASNEHQ----YGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~----~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
.++++||-+||-..... |++.+.|.+.|+-+|+.|.+.+.
T Consensus 289 ~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 289 PGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred CCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 35578999999876554 68999999999999999988764
No 278
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=36.03 E-value=66 Score=32.70 Aligned_cols=43 Identities=16% Similarity=0.076 Sum_probs=30.4
Q ss_pred CCCceEEcCCceEEEEecCCCc---EEEEe-----------------CCCcEEEcCEEEEcCCc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANG---VLVTC-----------------ADGSQYSADKVLITVSL 105 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~---v~v~~-----------------~~G~~~~ad~VIvtiP~ 105 (373)
+.|.+|++++.|.+|.. ++++ +.+.. .+++++.+|.||+++..
T Consensus 323 ~~GV~i~~~~~v~~i~~-~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 323 EEGVEFEWLAAPVEILG-DEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred HCCCEEEecCCcEEEEe-cCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 45789999999999987 4443 44321 12346899999998865
No 279
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=35.72 E-value=44 Score=37.83 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=29.3
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhh
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~ 369 (373)
+.++||.+||... +++.+.-|+..|..||..|+..
T Consensus 804 s~pgVFAaGD~a~--GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 804 NITNVFVIGDANR--GPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCCEEEEeCcCC--CccHHHHHHHHHHHHHHHHhcc
Confidence 3468999999765 3678999999999999999854
No 280
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=34.14 E-value=83 Score=36.35 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC----C----cE---EEEeC---CCc--EEEcCEEEEcCCcc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA----N----GV---LVTCA---DGS--QYSADKVLITVSLG 106 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~----~----~v---~v~~~---~G~--~~~ad~VIvtiP~~ 106 (373)
..++..|.+.+.+. .+.|++|+++++|+++..+++ + +| .+... +|+ .+.|+.||+|+---
T Consensus 544 ~~i~~~l~~~~~~~--~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf 619 (1167)
T PTZ00306 544 FTIMRTLEDHIRTK--LSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGF 619 (1167)
T ss_pred HHHHHHHHHHHHhh--ccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCc
Confidence 34555665554310 024789999999999998321 1 33 33333 454 46899999998753
No 281
>PLN02661 Putative thiazole synthesis
Probab=33.80 E-value=40 Score=33.46 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=30.4
Q ss_pred CCceEEEeccccCCCC----cc-hhhHHHHHHHHHHHHHHhhCCC
Q psy7654 333 GKQVLLFAGEASNEHQ----YG-TVNGAVETGWREADRILKSDPA 372 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~----~g-~veGA~~SG~~AA~~i~~~~~~ 372 (373)
-.|+||.||-+.+..+ .| .--|=+.||++||+.|++.|+.
T Consensus 285 v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 285 VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 3478999999887542 24 4455578999999999998864
No 282
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=33.67 E-value=67 Score=33.33 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=30.4
Q ss_pred CCceEEcCCceEEEEecCCCcEE-EEeC---CC--cEEEcCEEEEcCCc
Q psy7654 63 LGKKLLLNKEVTKINWEDANGVL-VTCA---DG--SQYSADKVLITVSL 105 (373)
Q Consensus 63 ~G~~I~ln~~V~~I~~~~~~~v~-v~~~---~G--~~~~ad~VIvtiP~ 105 (373)
.|.+|++++.|++|.. +++++. |.+. +| +++.+|.||+++..
T Consensus 401 ~gV~i~~~~~v~~i~~-~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 401 PNVDILTSAQTTEIVG-DGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred CCCEEEECCeeEEEEc-CCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 4789999999999987 545542 4432 22 46899999998765
No 283
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=33.55 E-value=73 Score=32.59 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=30.3
Q ss_pred CCCceEEcCCceEEEEecCCCcEE-EE-----eCCC---------cEEEcCEEEEcCCc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVL-VT-----CADG---------SQYSADKVLITVSL 105 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~-v~-----~~~G---------~~~~ad~VIvtiP~ 105 (373)
+.|+++++++.+++|.. .++++. |. ..+| .++.+|.||+|+..
T Consensus 341 ~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 341 EEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 45789999999999975 455542 32 1122 46899999999864
No 284
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=33.50 E-value=1e+02 Score=33.07 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=31.7
Q ss_pred ceEEcCCceEEEEecCC--CcEEEEeC------CC--cEEEcCEEEEcCCcccc
Q psy7654 65 KKLLLNKEVTKINWEDA--NGVLVTCA------DG--SQYSADKVLITVSLGVF 108 (373)
Q Consensus 65 ~~I~ln~~V~~I~~~~~--~~v~v~~~------~G--~~~~ad~VIvtiP~~~l 108 (373)
.+++++++|++++...+ ..|.|+.. +| ++++||+||-|=-....
T Consensus 158 v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 158 LEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred eEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH
Confidence 36789999999987322 34766653 35 57899999998777644
No 285
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=32.00 E-value=1.6e+02 Score=27.52 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=28.5
Q ss_pred CceEEcCCceEEEEec-CCCc---EEEEeCCCc----EEEcCEEEEcCCc
Q psy7654 64 GKKLLLNKEVTKINWE-DANG---VLVTCADGS----QYSADKVLITVSL 105 (373)
Q Consensus 64 G~~I~ln~~V~~I~~~-~~~~---v~v~~~~G~----~~~ad~VIvtiP~ 105 (373)
+.+|+.++.|++|..+ ++++ |.+...++. .+.++.||++.-.
T Consensus 207 n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGa 256 (296)
T PF00732_consen 207 NLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGA 256 (296)
T ss_dssp TEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHH
T ss_pred CccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCC
Confidence 5799999999999662 2333 445555554 4578899998764
No 286
>KOG0405|consensus
Probab=30.87 E-value=1.1e+02 Score=30.65 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=43.9
Q ss_pred CCcHHHHHHHH-HHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 41 KGGYGNVLKLL-LKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 41 ~gG~~~L~~~L-~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
-.|+..++..+ .+++. ..|.++|.++.|++|.+..++...+.+.+|....+|.++-|+--.
T Consensus 225 LR~FD~~i~~~v~~~~~-----~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 225 LRGFDEMISDLVTEHLE-----GRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred hcchhHHHHHHHHHHhh-----hcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCC
Confidence 45676666655 56776 568999999999999994444456666677445699999887643
No 287
>PLN02815 L-aspartate oxidase
Probab=29.48 E-value=1.1e+02 Score=32.59 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc---E-EEE---eCCCc--EEEcCEEEEcCCc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG---V-LVT---CADGS--QYSADKVLITVSL 105 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~---v-~v~---~~~G~--~~~ad~VIvtiP~ 105 (373)
..|.++|.+.+.+ ..|.+|..++++++|..+++++ | -+. ..+|+ .+.++.||+|+--
T Consensus 155 ~~i~~~L~~~~~~----~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG 220 (594)
T PLN02815 155 REIERALLEAVKN----DPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGG 220 (594)
T ss_pred HHHHHHHHHHHHh----cCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCc
Confidence 4577888777642 2368999999999998722332 2 222 33553 4589999999874
No 288
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.91 E-value=1.5e+02 Score=29.98 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=32.3
Q ss_pred CceEEcCCceEEEEecCCCc-EEEEeC---CC--cEEEcCEEEEcCCcc
Q psy7654 64 GKKLLLNKEVTKINWEDANG-VLVTCA---DG--SQYSADKVLITVSLG 106 (373)
Q Consensus 64 G~~I~ln~~V~~I~~~~~~~-v~v~~~---~G--~~~~ad~VIvtiP~~ 106 (373)
...++-++.|.+++. .+++ +.+++. .| .+++.|+||+|+--.
T Consensus 292 ~v~l~~~~ev~~~~~-~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 292 DVRLLSLSEVQSVEP-AGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred Ceeeccccceeeeec-CCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 367889999999998 5555 777653 23 468899999998765
No 289
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=28.57 E-value=44 Score=35.10 Aligned_cols=37 Identities=19% Similarity=0.083 Sum_probs=28.8
Q ss_pred CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654 333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD 370 (373)
Q Consensus 333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~ 370 (373)
+.++||.|||-+.. .+..+..|+..|..||..|.+.|
T Consensus 272 s~p~IyAaGDv~~~-~~~~v~~A~~~G~~Aa~~i~~~l 308 (555)
T TIGR03143 272 NVPGVYAAGDLRPK-ELRQVVTAVADGAIAATSAERYV 308 (555)
T ss_pred CCCCEEEceeccCC-CcchheeHHhhHHHHHHHHHHHH
Confidence 45799999997643 23456789999999999997655
No 290
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=28.15 E-value=39 Score=33.81 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=24.0
Q ss_pred ceEEEeccccCCCC-cc--hhhHHHHHHHHHH
Q psy7654 335 QVLLFAGEASNEHQ-YG--TVNGAVETGWREA 363 (373)
Q Consensus 335 ~~i~fAGd~~s~~~-~g--~veGA~~SG~~AA 363 (373)
|+||||||-+...+ .| -.+-|..||..|+
T Consensus 368 ~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 368 PGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 58999999998764 23 6889999999886
No 291
>PRK06116 glutathione reductase; Validated
Probab=27.45 E-value=74 Score=32.15 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=28.8
Q ss_pred CCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 332 QGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
++.|+||.+||-+.. +...+-|+..|..||+.|+.
T Consensus 293 Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 293 TNVPGIYAVGDVTGR--VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred cCCCCEEEEeecCCC--cCcHHHHHHHHHHHHHHHhC
Confidence 345799999998743 45788999999999999975
No 292
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=27.12 E-value=47 Score=36.06 Aligned_cols=43 Identities=37% Similarity=0.486 Sum_probs=36.4
Q ss_pred CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL 105 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~ 105 (373)
++|.++++++.+++|.. .+....+..++|..+.||.||.|+-.
T Consensus 199 ~~Gi~~~l~~~t~ei~g-~~~~~~vr~~DG~~i~ad~VV~a~GI 241 (793)
T COG1251 199 DLGIKVLLEKNTEEIVG-EDKVEGVRFADGTEIPADLVVMAVGI 241 (793)
T ss_pred hhcceeecccchhhhhc-CcceeeEeecCCCcccceeEEEeccc
Confidence 67889999999999987 55556788999999999999999754
No 293
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=25.89 E-value=1.1e+02 Score=34.53 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=31.6
Q ss_pred CCCceEEcCCceEEEEecCCC--cEEEEe--CCCcEEEcCEEEEcCCcc
Q psy7654 62 DLGKKLLLNKEVTKINWEDAN--GVLVTC--ADGSQYSADKVLITVSLG 106 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~--~v~v~~--~~G~~~~ad~VIvtiP~~ 106 (373)
+.|.+|+.++.|++|.. ++. +|.+.. .+++++.+|.|++++...
T Consensus 363 ~~GV~i~~~~~v~~i~g-~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 363 ELGIEVLTGHVVAATEG-GKRVSGVAVARNGGAGQRLEADALAVSGGWT 410 (985)
T ss_pred HcCCEEEcCCeEEEEec-CCcEEEEEEEecCCceEEEECCEEEEcCCcC
Confidence 45789999999999976 433 244442 245678999999997653
No 294
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=25.88 E-value=1.4e+02 Score=30.28 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=29.5
Q ss_pred CCCceEEcCCceEEEEecCCCcE-EEEeC---------CC-----------cEEEcCEEEEcCCc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANGV-LVTCA---------DG-----------SQYSADKVLITVSL 105 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~v-~v~~~---------~G-----------~~~~ad~VIvtiP~ 105 (373)
+.|.++++++.+++|...+++++ .|... +| .++.+|.||+|+-.
T Consensus 321 ~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 321 EEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred hCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 45789999999999976233444 23221 22 25789999998865
No 295
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=25.74 E-value=90 Score=31.57 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=28.9
Q ss_pred CCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 332 QGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
++.|+||.+||-+.. +...+-|...|..||+.|+.
T Consensus 291 Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 291 TSIPSIYAVGDVTDR--INLTPVAIMEATCFANTEFG 325 (446)
T ss_pred cCCCCEEEeeccCCC--ccchhHHHHHHHHHHHHHhc
Confidence 345799999998754 45788999999999999875
No 296
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=24.91 E-value=1.2e+02 Score=29.47 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=28.5
Q ss_pred CCCceEEcCCceEEEEecCCCc--EEEE------------------eCCCcEEEcCEEEEcCCc
Q psy7654 62 DLGKKLLLNKEVTKINWEDANG--VLVT------------------CADGSQYSADKVLITVSL 105 (373)
Q Consensus 62 ~~G~~I~ln~~V~~I~~~~~~~--v~v~------------------~~~G~~~~ad~VIvtiP~ 105 (373)
..|.++++++.|++|+. .+.. +.+. ..+++++.+|.||+++..
T Consensus 222 ~~gi~i~~~~~v~~i~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 222 ARGVEFLELVTPVRIIG-EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred HcCCEEeeccCceeeec-CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 34688999999999875 3321 2221 112346899999998776
No 297
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=24.80 E-value=77 Score=31.90 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=23.0
Q ss_pred ceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654 335 QVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD 370 (373)
Q Consensus 335 ~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~ 370 (373)
++|||||+-+-. .|++|.|. +|..|+..+...+
T Consensus 356 ~~lf~AGqi~G~--~Gy~eaaa-~G~~ag~na~~~~ 388 (392)
T PF01134_consen 356 PGLFFAGQINGT--EGYEEAAA-QGLIAGINAARRL 388 (392)
T ss_dssp BTEEE-GGGGTB---SHHHHHH-HHHHHHHHHHHHH
T ss_pred CCceECCCCcch--hHHHHHHH-HHHHHHHHHHHHH
Confidence 589999998765 47777665 7888777766543
No 298
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=24.43 E-value=1.4e+02 Score=30.48 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=25.4
Q ss_pred CceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 334 KQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 334 ~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
.++||.+||.+.. +...+-|...|..||..|+.
T Consensus 310 ~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 310 ERHIYAIGDVIGE--PQLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred CCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 4689999997643 34677899999999988764
No 299
>PLN02507 glutathione reductase
Probab=23.87 E-value=1.9e+02 Score=29.85 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=28.1
Q ss_pred CCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 332 QGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
++.|+||-+||-+.. ....+-|...|..||+.|+.
T Consensus 328 Ts~p~IyAiGDv~~~--~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 328 TNIPSIWAIGDVTNR--INLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CCCCCEEEeeEcCCC--CccHHHHHHHHHHHHHHHcC
Confidence 455789999998764 34678899999999999874
No 300
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=23.84 E-value=84 Score=31.33 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=29.1
Q ss_pred eEEEeccccCCCCc---chhhHHHHHHHHHHHHHHhhC
Q psy7654 336 VLLFAGEASNEHQY---GTVNGAVETGWREADRILKSD 370 (373)
Q Consensus 336 ~i~fAGd~~s~~~~---g~veGA~~SG~~AA~~i~~~~ 370 (373)
++.++||+.....| +=|.-|+.||..||+.+.+.+
T Consensus 271 ~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~ 308 (398)
T TIGR02028 271 RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEES 308 (398)
T ss_pred CEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 79999999876654 468889999999999998654
No 301
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=23.49 E-value=11 Score=34.26 Aligned_cols=51 Identities=25% Similarity=0.311 Sum_probs=32.6
Q ss_pred ecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654 39 WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF 108 (373)
Q Consensus 39 ~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l 108 (373)
.+++|+.+|.+.|.++=. .+|+||+....+.. .+....++.||.|.|+..+
T Consensus 44 iP~~GYT~~fe~mL~h~~--------I~v~l~td~~~~~~-----------~~~~~~~~~viyTG~iDe~ 94 (204)
T PF03275_consen 44 IPKDGYTKMFENMLDHPN--------IEVRLNTDFFDIIE-----------FGGEPYADKVIYTGPIDEY 94 (204)
T ss_dssp EETTHHHHHHHHHC-STT--------EEEECS--GGGCHH-----------HHCCCTEEEEEE-S-HHHH
T ss_pred CchhCHHHHHHHHhCCCc--------eEEEcCCCHHHhhc-----------ccccccCCeEEEeCCHHHH
Confidence 369999999999986432 67888875554432 1113357899999999865
No 302
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=23.16 E-value=1e+02 Score=31.35 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=28.6
Q ss_pred CCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 332 QGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
++.|+||.+||-+.. +...+-|+..|+.||+.|+.
T Consensus 293 T~~p~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 293 TNVPGIYALGDVVGK--VELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CCCCCEEEEEecCCC--cccHHHHHHHHHHHHHHHhc
Confidence 345799999998753 45788899999999999973
No 303
>PRK14727 putative mercuric reductase; Provisional
Probab=22.97 E-value=87 Score=32.08 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=28.8
Q ss_pred CCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 332 QGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
++.++||-+||-+.. +..++-|+..|..||..|+.
T Consensus 311 Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 311 TSAPDIYAAGDCSDL--PQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred cCCCCEEEeeecCCc--chhhhHHHHHHHHHHHHHcC
Confidence 445799999998753 46788999999999999874
No 304
>PLN02661 Putative thiazole synthesis
Probab=22.46 E-value=1.6e+02 Score=29.32 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEe------CC--C------cEEEcCEEEEcCCc
Q psy7654 45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTC------AD--G------SQYSADKVLITVSL 105 (373)
Q Consensus 45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~------~~--G------~~~~ad~VIvtiP~ 105 (373)
..+...|.+++.. +.|.+|+.++.|..|.. +++++ -|.. .+ + ..+.|++||+|+-.
T Consensus 172 ~e~~stLi~ka~~----~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 172 ALFTSTIMSKLLA----RPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred HHHHHHHHHHHHh----cCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 3445666665432 34579999999999998 55553 2221 11 1 25799999999974
No 305
>KOG2404|consensus
Probab=22.18 E-value=1.5e+02 Score=29.33 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=30.2
Q ss_pred ceEEcCCceEEEEecCCCcE-EEE--eCCCc--EEEcCEEEEcCCcccc
Q psy7654 65 KKLLLNKEVTKINWEDANGV-LVT--CADGS--QYSADKVLITVSLGVF 108 (373)
Q Consensus 65 ~~I~ln~~V~~I~~~~~~~v-~v~--~~~G~--~~~ad~VIvtiP~~~l 108 (373)
..|.+|++|+.|.. ++++| -|. ..+|+ .+.++.||+++---..
T Consensus 160 ~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 160 VKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred Hhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 57999999999998 55554 233 44553 4678888888765544
No 306
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.13 E-value=96 Score=31.40 Aligned_cols=77 Identities=25% Similarity=0.337 Sum_probs=48.4
Q ss_pred cchhhhhhhhccCCcce-------eeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEE--EEeC
Q psy7654 20 TSAKRYNSFVTHEGCED-------TVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVL--VTCA 89 (373)
Q Consensus 20 ~S~~~~~~~~~~~g~~~-------~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~--v~~~ 89 (373)
+|...|+-|...-|+.. +..++-=+.+=.+=-+++++ .+++|++|+.|...+.+ .+. +.+.
T Consensus 69 Ts~ySFLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~---------~~rfg~~V~~i~~~~~d~~~~~~~~t~ 139 (436)
T COG3486 69 TSPYSFLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQLP---------SLRFGEEVTDISSLDGDAVVRLFVVTA 139 (436)
T ss_pred CCchHHHHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhCC---------ccccCCeeccccccCCcceeEEEEEcC
Confidence 56666666553222211 11135556666666677775 79999999977432222 333 6677
Q ss_pred CCcEEEcCEEEEcCCc
Q psy7654 90 DGSQYSADKVLITVSL 105 (373)
Q Consensus 90 ~G~~~~ad~VIvtiP~ 105 (373)
+++++.|+.+|+++-.
T Consensus 140 ~~~~y~ar~lVlg~G~ 155 (436)
T COG3486 140 NGTVYRARNLVLGVGT 155 (436)
T ss_pred CCcEEEeeeEEEccCC
Confidence 7889999999998754
No 307
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=22.00 E-value=30 Score=34.98 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeC--CC-cEEEcCEEEEcCCcccccc
Q psy7654 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCA--DG-SQYSADKVLITVSLGVFKS 110 (373)
Q Consensus 41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~--~G-~~~~ad~VIvtiP~~~l~~ 110 (373)
...+..+.+.|+. +.|++|++++.|.++.. +++++ .|... +| .++.|+.||=|+--..+..
T Consensus 89 ~~~~~~~l~~~l~--------e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~ 153 (428)
T PF12831_consen 89 PEVFKAVLDEMLA--------EAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAA 153 (428)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccccccccccccc--------ccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 3445555555553 45689999999999999 66554 24333 33 5689999999998665544
No 308
>PRK06370 mercuric reductase; Validated
Probab=21.72 E-value=1.2e+02 Score=30.72 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=28.9
Q ss_pred CCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhh
Q psy7654 332 QGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~ 369 (373)
++.++||-+||-+.. +...+-|...|..||+.|+..
T Consensus 299 t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 299 TTNPGIYAAGDCNGR--GAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred CCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHhCC
Confidence 345789999998754 446789999999999999753
No 309
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.01 E-value=78 Score=30.62 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=31.7
Q ss_pred CCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654 331 GQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 331 ~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~ 371 (373)
+++.|+||-|||-....+. -+-.|.-.|..||..+.+.+.
T Consensus 262 ~TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 262 ETSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred ccCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhh
Confidence 3556899999999886532 688899999999998877653
No 310
>PRK13748 putative mercuric reductase; Provisional
Probab=20.83 E-value=1e+02 Score=32.16 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=28.7
Q ss_pred CCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 332 QGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
++.++||.+||-+.. +..+.-|+..|..||..|+.
T Consensus 393 Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 393 TSVPHIYAAGDCTDQ--PQFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred cCCCCEEEeeecCCC--ccchhHHHHHHHHHHHHHcC
Confidence 345799999998764 46788899999999999864
No 311
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.81 E-value=1.1e+02 Score=31.12 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=28.9
Q ss_pred CCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 332 QGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
++.|+||.+||-+.. +...+-|...|..||..|+.
T Consensus 301 Ts~p~IyAiGD~~~~--~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 301 TNVPHIYAIGDVTAK--LQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred cCCCCEEEEeecCCC--cccHhHHHHHHHHHHHHHcC
Confidence 345799999998753 45788999999999999874
No 312
>KOG3851|consensus
Probab=20.80 E-value=43 Score=32.95 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=37.8
Q ss_pred CCcHHHHHHHH---HHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654 41 KGGYGNVLKLL---LKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG 106 (373)
Q Consensus 41 ~gG~~~L~~~L---~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~ 106 (373)
.||+.+|-..- ++-+++ +.-.+..+|.+++. +.+. |.+.+|+++.+|++|+|+-..
T Consensus 86 GgGl~~l~~srr~~a~liP~-------~a~wi~ekv~~f~P-~~N~--v~t~gg~eIsYdylviA~Giq 144 (446)
T KOG3851|consen 86 GGGLKSLDSSRRKQASLIPK-------GATWIKEKVKEFNP-DKNT--VVTRGGEEISYDYLVIAMGIQ 144 (446)
T ss_pred ccchhhhhhccCcccccccC-------CcHHHHHHHHhcCC-CcCe--EEccCCcEEeeeeEeeeeece
Confidence 78888776533 233322 22333468888876 5554 667788999999999999874
No 313
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=20.54 E-value=64 Score=33.45 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=29.1
Q ss_pred CCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654 332 QGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD 370 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~ 370 (373)
++.|+||.|||-.... ...+.-|+.+|..||..+.+.|
T Consensus 474 Ts~p~IyAaGDv~~~~-~k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 474 TSVPGVFAAGDCTTVP-YKQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred CCCCCEEECccccCCC-CCEEEEhhhhHHHHHHHHHHHH
Confidence 3557999999988753 2457788899999998887655
No 314
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=20.47 E-value=1.2e+02 Score=29.93 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC------C--cEEEcCEEEEcCCccc
Q psy7654 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD------G--SQYSADKVLITVSLGV 107 (373)
Q Consensus 46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~------G--~~~~ad~VIvtiP~~~ 107 (373)
.+-+.|.+.+. +.|++++.+ .|++|.. +++++.|+..+ | .++.+|.||.|--...
T Consensus 93 ~fd~~L~~~a~-----~~G~~v~~~-~v~~v~~-~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 93 VFDSYLRERAQ-----KAGAELIHG-LFLKLER-DRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred HHHHHHHHHHH-----hCCCEEEee-EEEEEEE-cCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 34445555544 457899755 6999988 67777776542 2 3689999999988653
No 315
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=20.39 E-value=1.7e+02 Score=30.38 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=27.5
Q ss_pred CceEEEeccccCCCCc--chhhHHHHHHHHHHHHHHhhCC
Q psy7654 334 KQVLLFAGEASNEHQY--GTVNGAVETGWREADRILKSDP 371 (373)
Q Consensus 334 ~~~i~fAGd~~s~~~~--g~veGA~~SG~~AA~~i~~~~~ 371 (373)
.++|+.|-..+-...+ ...--++--|+|||+.|++..+
T Consensus 492 v~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~~ 531 (532)
T TIGR01810 492 MEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGKKP 531 (532)
T ss_pred cCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhccCC
Confidence 3589999776654422 2555668889999999988765
No 316
>PRK14694 putative mercuric reductase; Provisional
Probab=20.31 E-value=1.1e+02 Score=31.13 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=28.8
Q ss_pred CCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654 332 QGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368 (373)
Q Consensus 332 ~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~ 368 (373)
++.++||-+||-+.. +..++-|...|..||..|+.
T Consensus 300 Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 300 TTVSGIYAAGDCTDQ--PQFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred cCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHhcC
Confidence 345789999998753 56888999999999999864
Done!