RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7654
(373 letters)
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 138 bits (348), Expect = 7e-37
Identities = 83/306 (27%), Positives = 117/306 (38%), Gaps = 77/306 (25%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPP 121
LG ++ LN V I +GV VT DG AD V++TV LGV K I F+PPLP
Sbjct: 216 LLGGRVRLNTRVRSITKSG-DGVTVTTVDGRTIEADAVIVTVPLGVLKR--ILFLPPLPA 272
Query: 122 QKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWIS 181
K +
Sbjct: 273 AK----------------QEAIRNLGF--------------------------------- 283
Query: 182 LFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
G+V KVF+ F +WP++ + T + DT+ G
Sbjct: 284 ---GSVSKVFLEFETPFWPENGDLFGLLVTDGLSRGGYVLDTSPSSG------------- 327
Query: 242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301
L ++ G +AR +E LSDE++ ++ R LG +P+P S W T+
Sbjct: 328 -SGRGVLLSYVLGDAARELEDLSDEELLEAVLRDLRKLLGPED-VPDPVNFLVSDWHTDP 385
Query: 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
+ +GSYS + D R L P+ G L FAGE ++ GTV GAVE+G R
Sbjct: 386 YARGSYSYPPVGDDS--RYRPALRTPVGPG-----LFFAGEHTSGGYPGTVEGAVESGLR 438
Query: 362 EADRIL 367
A R+L
Sbjct: 439 AARRVL 444
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 125 bits (316), Expect = 5e-32
Identities = 86/303 (28%), Positives = 127/303 (41%), Gaps = 79/303 (26%)
Query: 66 KLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKN 125
+L LNK V +I++ NGV V DGS Y A V+++VSLGV +SDLI F PPLP K
Sbjct: 246 RLKLNKVVREISYSK-NGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIE 304
Query: 126 IIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLG 185
I + K+F++FP K+WP G FF ++
Sbjct: 305 AIYQFDMAVYTKIFLKFPYKFWPSG-PGTEFFLYAHER---------------------- 341
Query: 186 TVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDP 245
RGY FW H + + P G+ + +T E+
Sbjct: 342 ------------------RGYYPFWQHLENEYP---------GSNVLF----VTVTDEE- 369
Query: 246 LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKG 305
+R +E D + K E M+ R G N IPE + + W +N+ FKG
Sbjct: 370 -----------SRRIEQQPDSETKAEIMEVLRKMFGPN--IPEATDILVPRWWSNRFFKG 416
Query: 306 SYSIYTLTTDKMNASRHD-LEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREAD 364
SYS + + ++ D + AP+ + F GE ++E G V+GA G A+
Sbjct: 417 SYSNWPI---GVSRYEFDQIRAPVGR------VYFTGEHTSEKYNGYVHGAYLAGIDTAN 467
Query: 365 RIL 367
+L
Sbjct: 468 DLL 470
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 119 bits (300), Expect = 9e-30
Identities = 100/363 (27%), Positives = 144/363 (39%), Gaps = 104/363 (28%)
Query: 42 GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLI 101
GY +V++ L +P T I LG+K VT+I W+D V + ADGS +AD V++
Sbjct: 239 KGYLSVIEALASVLPPGT-IQLGRK------VTRIEWQD-EPVKLHFADGSTMTADHVIV 290
Query: 102 TVSLGVFKSDLIT----FVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFF 157
TVSLGV K+ + F PPLP K + I L G V+K+FV +
Sbjct: 291 TVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPR------------ 338
Query: 158 WTHDDKKNPLFKDTAVVDGAPWISL-FLGTV-DKVFVRFPQKWWPDDVRGYNFFWTHDDE 215
D V P++ + F + + + P WW +R T
Sbjct: 339 --PDGS-------PEDVAKFPFLQMAFHRSDSEARHDKIP--WW---MRR-----TA--S 377
Query: 216 KNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKA 275
P+ K+++V+ L W +G A +E LSDE+I
Sbjct: 378 ICPIHKNSSVL----------------------LSWFAGKEALELEKLSDEEIIRGVQTT 415
Query: 276 FRFFLGANYTIPEPS--------------------RVFHSSWGTNKHFKGSYSIYTLTTD 315
FL +V S WGT+ F GSYS Y
Sbjct: 416 LSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYS-YV---- 470
Query: 316 KMNASRHDLE---APLSNGQGKQV-------LLFAGEASNEHQYGTVNGAVETGWREADR 365
+ +S DL+ PL LLFAGEA++ Y T +GA +G REA+R
Sbjct: 471 AVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANR 530
Query: 366 ILK 368
+L+
Sbjct: 531 LLQ 533
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 91.5 bits (227), Expect = 7e-20
Identities = 94/340 (27%), Positives = 140/340 (41%), Gaps = 101/340 (29%)
Query: 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINW--EDANG-------VLVTCADG 91
KGGY NV++ L + G + LN VT +++ +DA V V+ ++G
Sbjct: 932 KGGYSNVVESLAE----------GLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNG 981
Query: 92 SQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDI 151
S++ D VLITV LG K++ I F PPLP K + I+ L G ++KV + FP+ +W DD
Sbjct: 982 SEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFW-DDS 1040
Query: 152 RGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNF-FW 210
Y F T ++ D+RG F FW
Sbjct: 1041 VDY----------------------------FGATAEET-----------DLRGQCFMFW 1061
Query: 211 THDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKT 270
K T GAP ++ L + G +A +++S
Sbjct: 1062 N--------VKKTV---GAPVLIAL----------------VVGKAAIDGQSMSSSDHVN 1094
Query: 271 ESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHD---LEAP 327
++ R G +P+P + WG + G+YS Y + AS D L P
Sbjct: 1095 HALMVLRKLFG-EALVPDPVASVVTDWGRDPFSYGAYS-YV----AIGASGEDYDILGRP 1148
Query: 328 LSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRIL 367
+ N L FAGEA+ + TV GA+ +G REA RI+
Sbjct: 1149 VEN-----CLFFAGEATCKEHPDTVGGAMMSGLREAVRII 1183
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 81.6 bits (201), Expect = 8e-17
Identities = 79/289 (27%), Positives = 121/289 (41%), Gaps = 74/289 (25%)
Query: 81 ANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFV 140
+GV+V A G ++ D VL TV LGV K I F P LP +KK+ I+ L G ++KV +
Sbjct: 462 VDGVIVY-AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVAL 520
Query: 141 RFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWP 200
FP +W +I D L +D +
Sbjct: 521 LFPYNFWGGEI----------DTFGHLTEDPS---------------------------- 542
Query: 201 DDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFM 260
+RG FF LF + V G P ++ L ++G +A
Sbjct: 543 --MRG-EFF---------LFYSYSSVSGGPLLIAL----------------VAGDAAVKF 574
Query: 261 ETLSDEQIKTESMKAFR-FFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNA 319
ETLS + ++ R F +P+P + + WG + GSYS + + +
Sbjct: 575 ETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGS---SG 631
Query: 320 SRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368
+D+ A S G G+ + FAGEA+N+ T++GA +G REA IL+
Sbjct: 632 DDYDILAE-SVGDGR--VFFAGEATNKQYPATMHGAFLSGMREAANILR 677
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 76.6 bits (188), Expect = 4e-15
Identities = 89/338 (26%), Positives = 129/338 (38%), Gaps = 85/338 (25%)
Query: 36 DTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYS 95
D + GG G +++ L + +P +L K V I + +NGV V A Y
Sbjct: 372 DHCFLPGGNGRLVQALAENVP----------ILYEKTVQTIRY-GSNGVKVI-AGNQVYE 419
Query: 96 ADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYN 155
D VL TV LGV K+ I FVP LP +K + I+ L G ++KV + FP +W D+ +
Sbjct: 420 GDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFG 479
Query: 156 FFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDE 215
T D RG FF
Sbjct: 480 HL-TEDPNY---------------------------------------RG-EFF------ 492
Query: 216 KNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKA 275
LF A V G P ++ L ++G +A ET+ T +
Sbjct: 493 ---LFYSYAPVAGGPLLIAL----------------VAGEAAHKFETMPPTDAVTRVLHI 533
Query: 276 FR-FFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGK 334
R + +P+P + + WG + GSYS + AS D + L+ G
Sbjct: 534 LRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYS-----NVAVGASGDDYDI-LAESVGD 587
Query: 335 QVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372
L FAGEA+ T++GA TG REA + +S A
Sbjct: 588 GRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKA 625
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 73.6 bits (181), Expect = 2e-14
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 69 LNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIE 128
LN VTKI NGV VT DG+ + AD +I V LGV K+++I F P LP K+ I
Sbjct: 215 LNHRVTKIV-RRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAIS 273
Query: 129 SLFLGTVDKVFVRFPQKWWPD 149
L +G +K+ + F +WP+
Sbjct: 274 DLGVGIENKIALHFDSVFWPN 294
>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1.
Length = 738
Score = 70.3 bits (172), Expect = 4e-13
Identities = 78/306 (25%), Positives = 118/306 (38%), Gaps = 78/306 (25%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQ-YSADKVLITVSLGVFKSDLITFVPPLPPQ 122
G + K V I + + +GV V GSQ + AD VL TV LGV K I F P LP +
Sbjct: 366 GVPIFYGKTVDTIKYGN-DGVEVIA--GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRR 422
Query: 123 KKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISL 182
K I+ L G ++KV + FP +W +++ + +K
Sbjct: 423 KLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNK------------------- 463
Query: 183 FLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTT 242
RG FF LF V G P +V L
Sbjct: 464 ---------------------RG-EFF---------LFYGYHTVSGGPALVAL------- 485
Query: 243 EDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGAN-YTIPEPSRVFHSSWGTNK 301
++G +A+ E + + R +P+P + + WG++
Sbjct: 486 ---------VAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDP 536
Query: 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
GSYS + + + S +D+ A +G+ L FAGEA+ T++GA +G R
Sbjct: 537 LSYGSYSHVRVQS---SGSDYDILAESVSGR----LFFAGEATTRQYPATMHGAFLSGLR 589
Query: 362 EADRIL 367
EA RIL
Sbjct: 590 EASRIL 595
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 56.7 bits (137), Expect = 8e-09
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPP 121
LG ++LLN+ V +I+ +D +GV VT D QY AD VL+T+ L + I F P LP
Sbjct: 218 QLGTRILLNEPVRRID-QDGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLPA 274
Query: 122 QKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
+ K + + G+ K+ V F + +W +
Sbjct: 275 EYKQAAKGVPYGSATKIGVAFSRPFWEEA 303
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 37.8 bits (89), Expect = 0.007
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVL 100
D G + N+EV K+ +GV+V G + AD +L
Sbjct: 228 DSGVTIRHNEEVEKVE-GGDDGVIVHLKSGKKIKADCLL 265
Score = 28.6 bits (65), Expect = 5.4
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 80 DANGVLVTCADGS--QYSADKVLITV 103
D + V V C DG +ADK++I
Sbjct: 120 DPHTVEVECPDGEVETLTADKIVIAT 145
>gnl|CDD|236887 PRK11259, solA, N-methyltryptophan oxidase; Provisional.
Length = 376
Score = 34.8 bits (81), Expect = 0.064
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLIT 102
G +LL N+ VT I D +GV VT ADG+ Y A K++++
Sbjct: 162 AGAELLFNEPVTAIE-ADGDGVTVTTADGT-YEAKKLVVS 199
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 33.7 bits (78), Expect = 0.14
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 56 PGQ-------TPIDLGKKLLLNKEVTKINWEDANG---VLVTCADGSQ--YSADKVLITV 103
PGQ LG K++LN +V ++ + V+V DG++ +AD+V+ ++
Sbjct: 217 PGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSM 276
Query: 104 SLGVFKSDLITFVPPLPPQK 123
L +L+ + P PP +
Sbjct: 277 PL----RELVAALDPPPPPE 292
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 33.6 bits (78), Expect = 0.15
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 31/98 (31%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLIT------- 114
G ++ L EVT ++ E ANGV+V G Y A + ++ SD +
Sbjct: 161 ARGGEIRLGAEVTALD-EHANGVVVRTTQGE-YEARTL---INCAGLMSDRLAKMAGLEP 215
Query: 115 ---FVP------PLPPQKKNIIESL----------FLG 133
VP L P+K ++ L FLG
Sbjct: 216 DFRIVPFRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLG 253
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 33.3 bits (77), Expect = 0.22
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVL 100
+GG+ ++ L + + G ++ L VT + + GV DG + D V+
Sbjct: 194 EGGFATLIDALAEAI-----EARGGEIRLGTPVTSVVIDG-GGVTGVEVDGEEEDFDAVI 247
Query: 101 ITVSLGVFKSDLITFVPPLPP 121
T + VP LP
Sbjct: 248 STAPPPILAR----LVPDLPA 264
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 32.9 bits (76), Expect = 0.26
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVL 100
KGG ++++ L +++P T + VTKI+ + +G + ++G + AD V+
Sbjct: 217 KGGLQSLIEALEEKLPAGT-------IHKGTPVTKID-KSGDGYEIVLSNGGEIEADAVI 268
Query: 101 ITVS 104
+ V
Sbjct: 269 VAVP 272
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 32.2 bits (73), Expect = 0.47
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 260 METLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYS--IYTLTTDKM 317
++TL+ E+++ S+ + +G IPEP +FH + N +F +Y+ I
Sbjct: 575 VQTLTTEKLQLTSVTSLCMLIGNATVIPEPQTLFH-YYNVNVNFHSNYNERINDAVAIIT 633
Query: 318 NASRHDL 324
A+R DL
Sbjct: 634 AANRLDL 640
>gnl|CDD|112048 pfam03216, Rhabdo_ncap_2, Rhabdovirus nucleoprotein.
Length = 357
Score = 31.7 bits (72), Expect = 0.57
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 16/83 (19%)
Query: 27 SFVTHEGCEDTVWKKGGYGNVLKLL------LKQMPGQTPIDLGKKLLLNKEVTKINWED 80
+FVT +D K+L + Q+P T ++ G K +N E+
Sbjct: 67 AFVTQGTAQD------DLEAKCKILTDMGFKVTQVPRATGLEAGILDPNRKLAETVNNEN 120
Query: 81 ----ANGVLVTCADGSQYSADKV 99
G+L TCA +Y DK+
Sbjct: 121 VMDVVKGLLFTCALLVKYDVDKM 143
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 31.3 bits (71), Expect = 0.88
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVL 100
+GG G ++ L + + G ++ EV++I E GV V +DG AD V+
Sbjct: 220 RGGMGALVDALAELAR-----EHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVV 274
Query: 101 ITVS 104
Sbjct: 275 SNAD 278
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 31.4 bits (72), Expect = 0.88
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLIT 102
+LG K+ V + +D V G + AD +++
Sbjct: 120 ELGVKIRTRTRVLSVEKDDDGRFRVDTDGGEELEADSLVLA 160
>gnl|CDD|241144 cd12700, RRM3_hnRPLL, RNA recognition motif 3 in vertebrate
heterogeneous nuclear ribonucleoprotein L-like
(hnRNP-LL). The subgroup corresponds to the RRM3 of
hnRNP-LL which plays a critical and unique role in the
signal-induced regulation of CD45 and acts as a global
regulator of alternative splicing in activated T cells.
It is closely related in domain structure and sequence
to heterogeneous nuclear ribonucleoprotein L (hnRNP-L),
which is an abundant nuclear, multifunctional
RNA-binding protein with three RNA-recognition motifs
(RRMs), also known as RBD (RNA binding domain) or RNP
(ribonucleoprotein domain). .
Length = 71
Score = 28.4 bits (63), Expect = 1.1
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 44 YGNVLKL-LLKQMPGQTPIDLGKKLLLNKEVTKIN 77
YGN+ K+ +K +PG +++G + + + VT +N
Sbjct: 24 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLN 58
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 29.9 bits (68), Expect = 2.2
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLIT 102
LG ++L N +V I +D G V G +Y ADKV+I
Sbjct: 118 LGVEILTNSKVKSIK-KDDGGFGVET-SGGEYEADKVIIA 155
>gnl|CDD|185727 cd08986, GH43_7, Glycosyl hydrolase family 43. This glycosyl
hydrolase family 43 (GH43) includes enzymes with
beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC
3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-),
alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase
(EC 3.2.1.99), xylanase (EC 3.2.1.8),
endo-alpha-L-arabinanase and galactan
1,3-beta-galactosidase (EC 3.2.1.145) activities. These
are inverting enzymes (i.e. they invert the
stereochemistry of the anomeric carbon atom of the
substrate) that have an aspartate as the catalytic
general base, a glutamate as the catalytic general acid
and another aspartate that is responsible for pKa
modulation and orienting the catalytic acid. Many of the
enzymes in this family display both
alpha-L-arabinofuranosidase and beta-D-xylosidase
activity using aryl-glycosides as substrates. A common
structural feature of GH43 enzymes is a 5-bladed
beta-propeller domain that contains the catalytic acid
and catalytic base. A long V-shaped groove, partially
enclosed at one end, forms a single extended
substrate-binding surface across the face of the
propeller.
Length = 269
Score = 29.7 bits (67), Expect = 2.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 293 FHSSWGTNKHFKGSYSIYTLTTDK 316
F ++W T+K KGSY +Y DK
Sbjct: 198 FGTAWSTDKGRKGSYDLYYAVADK 221
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 29.6 bits (67), Expect = 2.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLI 101
G ++LL EV I+ + VL G + + DK++I
Sbjct: 69 FGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLII 107
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 29.8 bits (68), Expect = 2.4
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 43 GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKV 99
G G +++ L ++ G + L VT I +D +GV VT +DG+ D V
Sbjct: 100 GGGGIMRPALARILADAARAAGADVRLGTTVTAIE-QDDDGVTVTFSDGTTGRYDLV 155
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase;
Provisional.
Length = 377
Score = 29.5 bits (67), Expect = 2.9
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVL 100
++G LLL ++ + D+ G+ T G D V+
Sbjct: 195 EMGVHLLLKSQLQGLEKTDS-GIRATLDSGRSIEVDAVI 232
>gnl|CDD|198422 cd10464, PUB_RNF31, PNGase/UBA or UBX (PUB) domain of the RNF31 (or
HOIP) protein. This PUB domain is found in the p97
adaptor protein RNF31 (RING finger protein 31). The PUB
domain functions as a p97 (also known as
valosin-containing protein or VCP) adaptor by
interacting with the D1 and/or D2 ATPase domains. The
type II AAA+ ATPase p97 is involved in a variety of
cellular processes such as the deglycosylation of ERAD
substrates, membrane fusion, transcription factor
activation and cell cycle regulation through
differential binding to specific adaptor proteins. The
RNF31 protein, also known as HOIP or Zibra, contains an
N-terminal PUB domain similar to those in PNGase and
UBXD1, suggesting its association with p97. RNF31
functions in a complex with another RING-finger protein
(HOIL-IL), displaying E3 ubiquitin-protein ligase
activity, and forming linear ubiquitin chain assembly
complex (LUBAC) through linkages between the N- and
C-termini of ubiquitin. LUBAC has been shown to activate
the NF-kappaB pathway.
Length = 111
Score = 28.2 bits (63), Expect = 3.1
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 209 FWTHDDEKNPLFKDTA-VVDGAPWIVDLYGFYLTTEDPLTF 248
FW NP+F+ V G ++ LYG+ + D L+F
Sbjct: 42 FWRSVKFSNPVFRTKVDAVQGGRNVLSLYGYTESQPDGLSF 82
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 29.5 bits (67), Expect = 3.2
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
++ LLK++ LG + V+ + +D +G + + G D +++
Sbjct: 113 IVDALLKELE-----ALGVTIRTRSRVSSVE-KDDSGFRLDTSSGETVKCDSLILAT 163
>gnl|CDD|232870 TIGR00198, cat_per_HPI, catalase/peroxidase HPI. As catalase, this
enzyme catalyzes the dismutation of two molecules of
hydrogen peroxide to dioxygen and two molecules of
water. As a peroxidase, it uses hydrogen peroxide to
oxidize donor compounds and produce water. KatG from E.
coli is a homotetramer with two non-covalently
associated iron protoheme IX groups per tetramer, but
the ortholog from Synechococcus sp. is a homodimer with
one protoheme. Important sites (numbered according to E.
coli KatG) include heme ligands His-106 and His-267 and
active site Trp-318. Note that the translation
PID:g296476 from accession X71420 from Rhodobacter
capsulatus B10 contains extensive frameshift differences
from the rest of the orthologous family [Cellular
processes, Detoxification].
Length = 716
Score = 29.5 bits (66), Expect = 3.5
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 146 WWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVD-KVFVRFPQKWWPDDVR 204
WWP+ + + HD K NP+ +D + + L D K + Q WWP D
Sbjct: 19 WWPNALN-LDILHQHDRKTNPMGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWG 77
Query: 205 GY 206
Y
Sbjct: 78 HY 79
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 28.7 bits (65), Expect = 5.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 63 LGKKLLLNKEVTKINWEDANGVL-VTCADGSQ--YSADKVLITV 103
LG +++ +V + + GVL V +G + ADKVL++V
Sbjct: 234 LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSV 277
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 27.9 bits (63), Expect = 5.5
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 72 EVTKINWEDANGVLVTCADGSQYSADKVLITV 103
EV + G VT ADG+ AD V++
Sbjct: 120 EVVDLR-PRGGGYTVTLADGATLRADAVVLAT 150
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 28.2 bits (64), Expect = 7.1
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 49 KLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG---SQYSADKVLITV 103
KL + + G K+ + K+ + +GV VT DG AD VL+ V
Sbjct: 217 KLAERAL-----KKRGIKIKTGAKAKKVE-QTDDGVTVTLEDGGKEETLEADYVLVAV 268
>gnl|CDD|193524 cd05646, M20_AcylaseI_like, M20 Aminoacylase-I like subfamily.
Peptidase M20 family, Aminoacylase-I like (AcyI-like;
Acylase I; N-acyl-L-amino-acid amidohydrolase; EC
3.5.1.14) subfamily. Acylase I is involved in the
hydrolysis of N-acylated or N-acetylated amino acids
(except L-aspartate) and is considered as a potential
target of antimicrobial agents. Porcine AcyI is also
shown to deacetylate certain quorum-sensing
N-acylhomoserine lactones, while the rat enzyme has been
implicated in degradation of chemotactic peptides of
commensal bacteria. Prokaryotic arginine synthesis
usually involves the transfer of an acetyl group to
glutamate by ornithine acetyltransferase in order to
form ornithine. However, Escherichia coli
acetylornithine deacetylase (acetylornithinase, ArgE)
(EC 3.5.1.16) catalyzes the deacylation of
N2-acetyl-L-ornithine to yield ornithine and acetate.
Phylogenetic evidence suggests that the clustering of
the arg genes in one continuous sequence pattern arose
in an ancestor common to Enterobacteriaceae and
Vibrionaceae, where ornithine acetyltransferase was lost
and replaced by a deacylase.
Length = 391
Score = 28.0 bits (63), Expect = 8.2
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 134 TVD-KVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKV 190
TVD + F + ++W + RG + + ++K P T + D PW F V K+
Sbjct: 272 TVDLEEFEKRIKEWCAEAGRGVTYEF---EQKGPEVDPTPLDDSNPWWDAFKKAVKKM 326
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.437
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,311,948
Number of extensions: 1864818
Number of successful extensions: 1476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1454
Number of HSP's successfully gapped: 56
Length of query: 373
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 275
Effective length of database: 6,590,910
Effective search space: 1812500250
Effective search space used: 1812500250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)