RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7654
(373 letters)
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 227 bits (579), Expect = 2e-70
Identities = 82/372 (22%), Positives = 129/372 (34%), Gaps = 79/372 (21%)
Query: 1 MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTP 60
+D+ + + +F V + GY V+ L Q
Sbjct: 162 VDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDD 221
Query: 61 I---DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVP 117
+ +L LNK V +I + GV V D S YSAD V+++ SLGV +SDLI F P
Sbjct: 222 KSGKIVDPRLQLNKVVREIKY-SPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKP 280
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
LP K I + K+F++FP+K+WP+ F +
Sbjct: 281 KLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSR--------------- 325
Query: 178 PWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYG 237
RGY W
Sbjct: 326 --------------------------RGYYGVW-------------------------QE 334
Query: 238 FYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSW 297
F D L ++ +R +E SDEQ K E M+ R +P+ + + W
Sbjct: 335 FEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFP-GKDVPDATDILVPRW 393
Query: 298 GTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVE 357
+++ +KG++S L AP+ + F GE ++EH G V+GA
Sbjct: 394 WSDRFYKGTFS--NWPVGVNRYEYDQLRAPVGR------VYFTGEHTSEHYNGYVHGAYL 445
Query: 358 TGWREADRILKS 369
+G A+ ++
Sbjct: 446 SGIDSAEILINC 457
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 200 bits (508), Expect = 1e-59
Identities = 75/362 (20%), Positives = 126/362 (34%), Gaps = 38/362 (10%)
Query: 16 SWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTK 75
W K ++ T+ G + Y +V++ + + P L L+ EV
Sbjct: 173 LWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQN-------WLKLSCEVKS 225
Query: 76 INWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDL---------ITFVPPLPPQKKNI 126
I E + V V C DG+ Y+AD V+ITV V + I F PPL P ++
Sbjct: 226 ITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDA 285
Query: 127 IESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGT 186
+ + G + KV F + W ++ ++ + ++ +D +
Sbjct: 286 FDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELD----SMLE 341
Query: 187 VDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPL 246
+ W + F F I + ED
Sbjct: 342 REDSQKHTSVTCWS---QPLFFVNLSKSTGVASFMMLMQAPLTNHIESI------REDKE 392
Query: 247 TFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGS 306
+ + M+ L E + + M+ AN P + S+W + + +G+
Sbjct: 393 RLFSFFQPVLNKIMKCLDSEDV-IDGMRPIENIANANK--PVLRNIIVSNWTRDPYSRGA 449
Query: 307 YSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRI 366
YS D+ +SNGQ + + FAGE + G GA E+G REA RI
Sbjct: 450 YSACF-----PGDDPVDMVVAMSNGQDSR-IRFAGEHTIMDGAGCAYGAWESGRREATRI 503
Query: 367 LK 368
Sbjct: 504 SD 505
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 187 bits (477), Expect = 5e-55
Identities = 64/353 (18%), Positives = 109/353 (30%), Gaps = 86/353 (24%)
Query: 17 WFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKI 76
W+ ++ GG G V + ++ LG ++ L + V I
Sbjct: 187 WYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMD--------LLGDRVKLERPVIYI 238
Query: 77 NWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVD 136
+ VLV + Y A V+ + + I F PPLP + +I
Sbjct: 239 DQ-TRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMITR------- 288
Query: 137 KVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQ 196
+ LG+V K V + +
Sbjct: 289 ---------------------------------------------VPLGSVIKCIVYYKE 303
Query: 197 KWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGAS 256
+W Y D E+ P+ + +D + +G+I
Sbjct: 304 PFWRKK--DYCGTMIIDGEEAPVA----------YTLDDTK---PEGNYAAIMGFILAHK 348
Query: 257 ARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDK 316
AR + L+ E+ + + + LG + EP +W ++ G Y+ Y
Sbjct: 349 ARKLARLTKEERLKKLCELYAKVLG-SLEALEPVHYEEKNWCEEQYSGGCYTTY-FPPGI 406
Query: 317 MNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369
+ L P+ + FAG + H G + GAVE G R A IL +
Sbjct: 407 LTQYGRVLRQPVDR------IYFAGTETATHWSGYMEGAVEAGERAAREILHA 453
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 185 bits (471), Expect = 3e-53
Identities = 74/377 (19%), Positives = 124/377 (32%), Gaps = 94/377 (24%)
Query: 6 KAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGK 65
A + S K ++ E + + GY V L + +
Sbjct: 362 FANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD--------- 412
Query: 66 KLLLNKEVTKINWEDANGVLV------TCADGSQYSADKVLITVSLGVFK--SDLITFVP 117
+ LN V ++ + A+G V + + Y D VL T+ LGV K + FVP
Sbjct: 413 -IKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVP 470
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
PLP K + ++
Sbjct: 471 PLPEWKTSAVQR------------------------------------------------ 482
Query: 178 PWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYG 237
+ G ++KV + F + +W V + + +L+
Sbjct: 483 ----MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTA----------------SRGELFL 522
Query: 238 FYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSW 297
F+ + P L ++G +A ME +SD+ I + + G + +P+P S W
Sbjct: 523 FWNLYKAP-ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFG-SSAVPQPKETVVSRW 580
Query: 298 GTNKHFKGSYSIYTLTT-----DKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTV 352
+ +GSYS + D M + Q L FAGE + + TV
Sbjct: 581 RADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATV 640
Query: 353 NGAVETGWREADRILKS 369
+GA+ +G REA RI
Sbjct: 641 HGALLSGLREAGRIADQ 657
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 181 bits (461), Expect = 3e-53
Identities = 62/356 (17%), Positives = 111/356 (31%), Gaps = 90/356 (25%)
Query: 14 SDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEV 73
SA ++ V + D GG V + + LG + LN V
Sbjct: 185 QAVLMAASAGSFSHLVDEDFILDK-RVIGGMQQVSIRMAE--------ALGDDVFLNAPV 235
Query: 74 TKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLG 133
+ W + +G V + A +V++ V ++ I++ PPLP ++ + +
Sbjct: 236 RTVKW-NESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQH---- 288
Query: 134 TVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVR 193
LG V KV
Sbjct: 289 ------------------------------------------------QSLGLVIKVHAV 300
Query: 194 FPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWIS 253
+ +W +D F + + ++Y +D T + ++S
Sbjct: 301 YETPFWREDGLSGTGFGASE-----------------VVQEVYDNTNHEDDRGTLVAFVS 343
Query: 254 GASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLT 313
A M LS E+ K + + +LG EP + S WG+ + +G Y+ +
Sbjct: 344 DEKADAMFELSAEERKATILASLARYLGPK--AEEPVVYYESDWGSEEWTRGCYA-ASFD 400
Query: 314 TDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369
++ D P+ + F+ Y V+GAV G R A I+
Sbjct: 401 LGGLHRYGADSRTPVGP------IHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 183 bits (465), Expect = 1e-51
Identities = 72/369 (19%), Positives = 122/369 (33%), Gaps = 94/369 (25%)
Query: 14 SDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEV 73
+ S K ++ E + + GY V L + + + LN V
Sbjct: 541 ATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD----------IKLNTAV 590
Query: 74 TKINWEDANGVLV------TCADGSQYSADKVLITVSLGVFK--SDLITFVPPLPPQKKN 125
++ + A+G V + + Y D VL T+ LGV K + FVPPLP K +
Sbjct: 591 RQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTS 649
Query: 126 IIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLG 185
++ + G
Sbjct: 650 AVQR----------------------------------------------------MGFG 657
Query: 186 TVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDP 245
++KV + F + +W V + + +L+ F+ + P
Sbjct: 658 NLNKVVLCFDRVFWDPSVNLFGHVGSTTA----------------SRGELFLFWNLYKAP 701
Query: 246 LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKG 305
L ++G +A ME +SD+ I + + + +P+P S W + +G
Sbjct: 702 -ILLALVAGEAAGIMENISDDVIVGRCLAILKGIF-GSSAVPQPKETVVSRWRADPWARG 759
Query: 306 SYSIYTLTT-----DKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGW 360
SYS + D M + Q L FAGE + + TV+GA+ +G
Sbjct: 760 SYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGL 819
Query: 361 READRILKS 369
REA RI
Sbjct: 820 REAGRIADQ 828
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 155 bits (393), Expect = 4e-43
Identities = 47/363 (12%), Positives = 95/363 (26%), Gaps = 98/363 (26%)
Query: 7 AQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKK 66
+S W+ S Y C + K G + ++ G +
Sbjct: 220 ENSSFGEFLHWWAMSGYTYQGC---MDCLMSYKFKDGQSAFARRFWEEAAGTGRLGY--- 273
Query: 67 LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNI 126
+ V + + + VT DG ++ A +V+ T+ L V + I F P L ++ +
Sbjct: 274 -VFGCPVRSVVN-ERDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISA 329
Query: 127 IESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGT 186
+++ + KV K
Sbjct: 330 MQAGHVSMCTKVHAEVDNK-----------DM---------------------------- 350
Query: 187 VDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPL 246
R + ++ D G +V F
Sbjct: 351 -----------------RSWTGIAYPFNKLCYAIGDGTTPAGNTHLV---CF-------- 382
Query: 247 TFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGS 306
+ ++ E++KA R+ +W ++ KG+
Sbjct: 383 ----------GNSANHIQPDEDVRETLKAVGQLAPG---TFGVKRLVFHNWVKDEFAKGA 429
Query: 307 YSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRI 366
+ ++ L ++FA ++GA+E G R A +
Sbjct: 430 WFFSR--PGMVSECLQGLREKHGG------VVFANSDWALGWRSFIDGAIEEGTRAARVV 481
Query: 367 LKS 369
L+
Sbjct: 482 LEE 484
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 136 bits (343), Expect = 2e-36
Identities = 48/349 (13%), Positives = 100/349 (28%), Gaps = 108/349 (30%)
Query: 21 SAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED 80
+A Y+ ++ G +++ + +++P ++ L VT I+
Sbjct: 185 AAHHYSILGVVLSLDEVF--SNGSADLVDAMSQEIP---------EIRLQTVVTGIDQ-S 232
Query: 81 ANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFV 140
+ V VT DG + A V++ + ++ I F P LP +++++IE
Sbjct: 233 GDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIEE----------- 279
Query: 141 RFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWP 200
G K+ +
Sbjct: 280 -----------------------------------------GHGGQGLKILIHVRGAEAG 298
Query: 201 DDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFM 260
+ G D P D V + ++ ++ +
Sbjct: 299 IECVG--------DGIFPTLYDYCEVSESERLL------------------VAFTDSGSF 332
Query: 261 ETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNAS 320
+ +K A ++L E + + W + F+G + + +
Sbjct: 333 DPTDIGAVK----DAVLYYLPE----VEVLGIDYHDWIADPLFEGPWVAPRVGQ--FSRV 382
Query: 321 RHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369
+L P + F G + G + GA+ET + IL S
Sbjct: 383 HKELGEPAGR------IHFVGSDVSLEFPGYIEGALETAECAVNAILHS 425
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 130 bits (327), Expect = 6e-34
Identities = 43/331 (12%), Positives = 96/331 (29%), Gaps = 85/331 (25%)
Query: 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS---QYSAD 97
GG + ++ ++ EVT + + GV V G +AD
Sbjct: 235 VGGMDRIYYAFQDRIGTDN-------IVFGAEVTSMKN-VSEGVTVEYTAGGSKKSITAD 286
Query: 98 KVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFF 157
+ T+ + + LP +++ + K+ + + ++WW + R Y
Sbjct: 287 YAICTIPPHL----VGRLQNNLPGDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGA 342
Query: 158 WTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKN 217
D D + FP + ++ ++
Sbjct: 343 SNTDK-------------------------DISQIMFP-------------YDHYNSDRG 364
Query: 218 PLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFR 277
+ + + + SG E+L+ Q +++
Sbjct: 365 VV--------------------------VAY--YSSGKRQEAFESLTHRQRLAKAIAEGS 396
Query: 278 FFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVL 337
G Y + S F SW K+ + +++ + + + L K +
Sbjct: 397 EIHGEKY-TRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDK--I 453
Query: 338 LFAGEASNEHQYGTVNGAVETGWREADRILK 368
FAG+ + +GA+ + I +
Sbjct: 454 YFAGDHLSNA-IAWQHGALTSARDVVTHIHE 483
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 127 bits (320), Expect = 8e-33
Identities = 56/381 (14%), Positives = 106/381 (27%), Gaps = 103/381 (27%)
Query: 2 DFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPI 61
D +G N F + +++ +E D + G + + +
Sbjct: 201 DMIGDLLNEDSGYYVSF-IESLKHDDIFAYEKRFDEI--VDGMDKLPTAMYRD------- 250
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTC----ADGSQYSADKVLITVSLGVFKSDLITFVP 117
+ K+ N +V KI + V V + +AD V++ + + I F P
Sbjct: 251 -IQDKVHFNAQVIKIQQ-NDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKFNP 306
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
PL P+K + +
Sbjct: 307 PLLPKKAHALR------------------------------------------------- 317
Query: 178 PWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYG 237
S+ + K+F+ K+W DD G + + D P Y
Sbjct: 318 ---SVHYRSGTKIFLTCTTKFWEDD--GIHGGKSTTDL--------------PSRFIYYP 358
Query: 238 FYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFR--FFLGANYTIPEPSRVFHS 295
+ T + + G A F + L + L
Sbjct: 359 NHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQ 418
Query: 296 SWGTNKHFKGSYSIYT---LTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTV 352
W +K+ G + +T L A + FAGE + + +G +
Sbjct: 419 KWSLDKYAMGGITTFTPYQFQHF-----SDPLTASQGR------IYFAGEYTAQA-HGWI 466
Query: 353 NGAVETGWREADRILKSDPAP 373
+ +++G R A + + P
Sbjct: 467 DSTIKSGLRAARDVNLASENP 487
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 181
Score = 63.8 bits (155), Expect = 3e-12
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 249 LGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYS 308
+ A ++ D + +++ + G + SW + + G +
Sbjct: 40 AAYSWSDDAARWDSFDDAERYGYALENLQSVHGRRIEVFYTGAGQTQSWLRDPYACGEAA 99
Query: 309 IYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368
+Y T +M A D+ P + FAGE + + + GAVET R A + +
Sbjct: 100 VY--TPHQMTAFHLDVVRPEGP------VYFAGEHVSLK-HAWIEGAVETAVRAAIAVNE 150
Query: 369 SDPAP 373
+
Sbjct: 151 APVGD 155
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 130
Score = 60.0 bits (145), Expect = 2e-11
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 89 ADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWP 148
A ++ D ++T+ + + PP +K+ + KV + F ++WW
Sbjct: 1 AATQTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWE 58
Query: 149 DDIRGY 154
+
Sbjct: 59 FTEADW 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 66/399 (16%), Positives = 120/399 (30%), Gaps = 112/399 (28%)
Query: 2 DF---LGKAQNSLDASDSWFETSAK-----RYNSFVTHEGCEDTVWKKGGYGNVLKLLLK 53
F L + A D E + ++ +V+ E + K G + VL L L
Sbjct: 36 QFNKILPEPTEGFAADD---EPTTPAELVGKFLGYVSSL-VEPS--KVGQFDQVLNLCLT 89
Query: 54 QMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLI 113
+ L ++ + + + + K + + ++
Sbjct: 90 --------EFENCYLEGNDI--------HALAAKLLQENDTTLVKTKELIK-NYITARIM 132
Query: 114 TFVPPLPPQKKNIIESLFLGTVD----KVFVRF-----PQKWWPDDIRGYNFFWTHDDKK 164
P S V ++ F ++ +++R + + T+
Sbjct: 133 AKRPFDKKS-----NSALFRAVGEGNAQLVAIFGGQGNTDDYF-EELR--DLYQTYHVLV 184
Query: 165 NPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFF-WTHDDEKNPLFKDT 223
L K +A +S + T F Q G N W + P D
Sbjct: 185 GDLIKFSAET-----LSELIRTTLDAEKVFTQ--------GLNILEWLENPSNTP---DK 228
Query: 224 AVVDGAP------WIVDLYGFYLTTE----DPLTFLGWISGAS--------ARFM-ETLS 264
+ P ++ L + +T + P ++ GA+ A + ET S
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 265 DEQIKTESMKAFR--FFLG--ANYTIPE---PSRVFHSSWGTNKHFKG--SY--SIYTLT 313
E KA FF+G P P + S ++ +G S SI LT
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL---ENNEGVPSPMLSISNLT 345
Query: 314 T-------DKMNA----SRHDLEAPLSNGQGKQVLLFAG 341
+K N+ + +E L NG V+ +G
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQ-VEISLVNGAKNLVV--SG 381
Score = 40.0 bits (93), Expect = 0.001
Identities = 52/302 (17%), Positives = 81/302 (26%), Gaps = 135/302 (44%)
Query: 13 ASDSW--FETSAKRYNSFVTHEGCE----------------DTVWKKGGYGNVLKLLLKQ 54
+DSW F S ++ + + G D++ + G
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL--ENNEGV-------- 334
Query: 55 MPGQTPI----DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL----- 105
P +P+ +L ++ + V K N S A K + +SL
Sbjct: 335 -P--SPMLSISNLTQEQVQ-DYVNKTN--------------SHLPAGKQ-VEISLVNGAK 375
Query: 106 -----GVFKSDLITFVPPL-----PP----------QKKNIIESLFLGTVDKVFVRF--- 142
G L L P ++K + FL V F
Sbjct: 376 NLVVSG-PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL----PVASPFHSH 430
Query: 143 ----PQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPW------ISLFLGTVDKVFV 192
D+ N + D + P++ DT DG+ IS + VD +
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVY-DTF--DGSDLRVLSGSISERI--VDCII- 484
Query: 193 RFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWI 252
R P KW +T A I+D P G
Sbjct: 485 RLPVKW-----------------------ETTTQFKATHILDF--------GP----GGA 509
Query: 253 SG 254
SG
Sbjct: 510 SG 511
Score = 38.5 bits (89), Expect = 0.003
Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 60/192 (31%)
Query: 1 MDFLGK---AQNSLDASDSWFETSAKRYN----SFVTHEGCEDTVWKKGGYGNVLKLLLK 53
MD AQ+ + +D+ F+ Y V + T+ G G ++
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFK---DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 54 QMPGQTPID---LGKKLL--LNKEVTKINWEDANGVL-VTCADGSQYS--ADKVLITVSL 105
M +T +D +K+ +N+ T + G+L T Q++ A L +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-----QFTQPA---LTLMEK 1741
Query: 106 GVFKSDLITFVPPLPPQKKNII--ESLF----LG----------------TVDKVFVR-- 141
F+ DL + K +I ++ F LG V+ VF R
Sbjct: 1742 AAFE-DL---------KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 142 FPQKWWPDDIRG 153
Q P D G
Sbjct: 1792 TMQVAVPRDELG 1803
Score = 37.0 bits (85), Expect = 0.013
Identities = 58/376 (15%), Positives = 108/376 (28%), Gaps = 114/376 (30%)
Query: 15 DSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVT 74
+ SA+ + + + V+ +G N+L+ L + P TP K LL+ ++
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWL--ENPSNTP---DKDYLLSIPIS 237
Query: 75 KINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGT 134
L+ + Y V+ LG +L +++ + ++ ++ +
Sbjct: 238 --------CPLIGVIQLAHY----VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 135 VDKVFVRFPQKWWPD----DIRGYNF-FW----THDDKKNPLFKDTAVVD------GAPW 179
D W + F+ ++ N + + D G P
Sbjct: 286 TDS---------WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP- 335
Query: 180 ISLFLGTVDKVFVR-FPQKWWPDDVRGYNFFWTHDDEKNPLF------KDTAVVDGAPWI 232
S L + Q+ D V N +H + VV G P
Sbjct: 336 -SPMLS------ISNLTQEQVQDYVNKTN---SHLPAGKQVEISLVNGAKNLVVSGPP-- 383
Query: 233 VDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTE-SMKAFRF---FLGANYTIPE 288
LYG LT + A + +Q + S + +F FL +
Sbjct: 384 QSLYGLNLTLRK--------AKAPS------GLDQSRIPFSERKLKFSNRFL----PVAS 425
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQ 348
P FHS + + + L + F +
Sbjct: 426 P---FHSHL-------------------LVPASDLINKDLVKNN----VSFNAKDIQIPV 459
Query: 349 YGTVNGAVETGWREAD 364
Y T +G+ R
Sbjct: 460 YDTFDGSD---LRVLS 472
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 39.7 bits (93), Expect = 0.001
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVL 100
+GG V+ L + + ++ K+L KEV +IN E+ V D +YS D +
Sbjct: 185 RGGCKAVIDELERII-----MENKGKILTRKEVVEINIEEKK---VYTRDNEEYSFDVAI 236
Query: 101 ITVSL 105
V +
Sbjct: 237 SNVGV 241
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 37.9 bits (89), Expect = 0.004
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLIT 102
V+ LL ++ DLG K+ N V I +E+ V G + V+I
Sbjct: 136 VVDALLTRL-----KDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIA 186
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 37.3 bits (85), Expect = 0.007
Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 17/108 (15%)
Query: 2 DFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWK--KGGYGNVLKLLLKQMPGQT 59
+ +G +N F S + + +GG + + L K
Sbjct: 280 EAIGTIENMTSRLHLAFFHSFLGRSDID-----PRATYWEIEGGSRMLPETLAKD----- 329
Query: 60 PIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLI-TVSLG 106
L ++++ + + ++ + D G + + V I TV G
Sbjct: 330 ---LRDQIVMGQRMVRLEYYD-PGRDGHHGELTGPGGPAVAIQTVPEG 373
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 37.2 bits (87), Expect = 0.008
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 49 KLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
+L + + G +L N + GVLVT DG L+T+
Sbjct: 227 LVLEESFAER-----GVRLFKNARAASVT-RTGAGVLVTMTDGRTVEGSHALMTI 275
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 36.6 bits (85), Expect = 0.010
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED--ANGVLVTCADGSQYSADK 98
+GG ++ L + G K+ +EV+KI E+ A G++ AD + AD
Sbjct: 192 EGGCKGIIDALETVI-----SANGGKIHTGQEVSKILIENGKAAGII---ADDRIHDADL 243
Query: 99 V 99
V
Sbjct: 244 V 244
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 36.2 bits (84), Expect = 0.015
Identities = 7/36 (19%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 66 KLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLI 101
+ +K + ++ +D+ V + +DG++ A+ +I
Sbjct: 113 RYHTSKCLVGLS-QDSETVQMRFSDGTKAEAN-WVI 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.015
Identities = 34/221 (15%), Positives = 60/221 (27%), Gaps = 54/221 (24%)
Query: 36 DTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLL---NKEVTKINWEDANGVLVTCADGS 92
V +L K+LL K+VT D T +
Sbjct: 251 LNVQNA----KAWNAF----------NLSCKILLTTRFKQVT-----DFLSAATT----T 287
Query: 93 QYSADKVLITV----SLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWP 148
S D +T+ + L LP + L + + W
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATW-- 344
Query: 149 DDIRGYNFFWTHDDKKNPLFKDT-AVVDGAPWISLFLGTVDKVFVRFPQKWW-PDDVRGY 206
D+ + N DK + + + V++ A + +F FP P +
Sbjct: 345 DNWKHVNC-----DKLTTIIESSLNVLEPAEYRKMF-----DRLSVFPPSAHIPTIL--L 392
Query: 207 NFFWTHDDEKNP------LFKDTAVV-DGAPWIVDLYGFYL 240
+ W + + L K + V + + YL
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Score = 33.7 bits (76), Expect = 0.11
Identities = 24/182 (13%), Positives = 38/182 (20%), Gaps = 68/182 (37%)
Query: 200 PDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWI---SGAS 256
V ++ D K + + I+ L W
Sbjct: 27 DAFVDNFDCKDVQDMPK-SILSKEEIDH----IIMSK----DAVSGTLRLFWTLLSKQEE 77
Query: 257 A--RFMETLSD-------EQIKTESMKAFRFFLGANYTIPEPSRVFHSS-----WGTNKH 302
+F+E + IKTE P + + N+
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTE------------QRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 303 FKGSYSIYTLTTDKMNASRHDLEAPLSN-----------------GQGKQVLLFAGEASN 345
F K N SR L G GK + A +
Sbjct: 126 FA-----------KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCL 172
Query: 346 EH 347
+
Sbjct: 173 SY 174
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 35.7 bits (83), Expect = 0.021
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 69 LNKEVTKINWEDANGVLVTCADGSQYSADKVLI 101
K VT+ EDA+GV V DGS S D +LI
Sbjct: 144 FGKRVTRCE-EDADGVTVWFTDGSSASGD-LLI 174
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 35.2 bits (81), Expect = 0.033
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 4/93 (4%)
Query: 70 NKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIES 129
V + +E+ + ADG + A++ + G + F L P ++
Sbjct: 184 QGRVVTLIFENNDVKGAVTADGKIWRAERTFLCA--GASAGQFLDFKNQLRPTAWTLVHI 241
Query: 130 LFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDD 162
++ P + RG+ F +
Sbjct: 242 ALKPEERALYKNIPV--IFNIERGFFFEPDEER 272
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 34.5 bits (79), Expect = 0.048
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 20/121 (16%)
Query: 41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVL 100
G + + L L N ++T+I ED V + D + +D ++
Sbjct: 202 ADGTQAMFEHLNAT--------LEHPAERNVDITRITRED-GKVHIHTTDWDR-ESDVLV 251
Query: 101 ITVSLGVFKSDLITFVPPLPPQKKNIIESL-----FLGTVDKVFVRFPQKWWPDDIRGYN 155
+TV L F ++ + + + PD++R
Sbjct: 252 LTVPLEKFLDYS-----DADDDEREYFSKIIHQQYMVDACLVKEYPTISGYVPDNMRPER 306
Query: 156 F 156
Sbjct: 307 L 307
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 34.4 bits (80), Expect = 0.062
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
++ KQ G + VT + +A G V G AD+VL+ V
Sbjct: 213 AAERVFKKQ---------GLTIRTGVRVTAVV-PEAKGARVELEGGEVLEADRVLVAV 260
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 33.3 bits (77), Expect = 0.11
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
LG + L + + + G+ +DG D V+ V
Sbjct: 199 GLGVRFHLGPVLASLK-KAGEGLEAHLSDGEVIPCDLVVSAV 239
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 32.9 bits (76), Expect = 0.15
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 62 DLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLIT 102
D+ K N VT + + + + VT + + LI+
Sbjct: 101 DVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCR-FLIS 141
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 32.9 bits (76), Expect = 0.15
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107
+ ++V ++ + V D AD V+ ++ GV
Sbjct: 214 KNDVVVHTGEKVVRLE-GENGKVARVITDKRTLDADLVI--LAAGV 256
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 32.9 bits (76), Expect = 0.17
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107
G L+L +V E + ++ DG + +D + + +G
Sbjct: 203 AHGVNLVLGSKVAAFE-EVDDEIITKTLDGKEIKSDIAI--LCIGF 245
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 32.5 bits (75), Expect = 0.20
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 62 DLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLIT 102
DL + + VT +++A V G + A LI
Sbjct: 108 DLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRAR-YLIM 148
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 32.3 bits (74), Expect = 0.24
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
G L N VT I D +GV + ADG Y A K ++
Sbjct: 162 AGCAQLFNCPVTAIR-HDDDGVTIETADGE-YQAKKAIVCA 200
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 32.4 bits (74), Expect = 0.26
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLIT 102
+ G +L K+V ++ D +V DGSQ + +K LI
Sbjct: 102 NGGVAVLTGKKVVQL---DVRDNMVKLNDGSQITYEKCLIA 139
Score = 30.9 bits (70), Expect = 0.74
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107
G K++ N V + + +L+ DG + D ++ ++G+
Sbjct: 240 GVKVMPNAIVQSVG-VSSGKLLIKLKDGRKVETDHIV--AAVGL 280
>3gzu_A Inner capsid protein VP2; 7RP, DLP, metal- binding, virion, zinc,
core protein, RNA-binding, icosaderal virus; 3.80A
{Rotavirus A} PDB: 3kz4_A 3n09_A
Length = 800
Score = 32.4 bits (73), Expect = 0.29
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 256 SARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYS 308
+ + ++TL+ E+++ S+ + +G IP P +FH + N +F +Y+
Sbjct: 484 NMQHVQTLTTEKLQLTSVTSLCMLIGNATVIPSPQTLFH-YYNVNVNFHSNYN 535
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 32.2 bits (74), Expect = 0.29
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 62 DLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLIT 102
DL + EVT + D + VT G Y A ++
Sbjct: 101 DLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAK-YVVN 141
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 32.1 bits (71), Expect = 0.31
Identities = 29/296 (9%), Positives = 61/296 (20%), Gaps = 45/296 (15%)
Query: 78 WEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDK 137
+ D V L P + I L + K
Sbjct: 422 SGFEHAASQNLGDAGLGLETHTYNQVYP---PLLLSDSSPAANARIVTAIGQLHMARSSK 478
Query: 138 VFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQK 197
VF PW+ + G K V
Sbjct: 479 VFATVKTAALDQ----------------------------PWVPQWRGEPIKAVV----- 505
Query: 198 WWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGA-PWIVDLYGFYLTTEDPLTFLGWISGAS 256
D ++ ++ + + + + W D +G +
Sbjct: 506 --SDSGLAASYVVPSPIVEDGQAPEYSSLLASYTWEDDSTRLRHDFGLYPQNPATETGTA 563
Query: 257 ARFMETLSDEQIK----TESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTL 312
T+ + + + A ++ + F W TN G + +
Sbjct: 564 DGMYRTMVNRAYRYVKYAGASNAQPWWFYQLLAEARTADRFVFDWTTN-KTAGGFKLDMT 622
Query: 313 TTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368
+ A ++ + G + GA + ++
Sbjct: 623 GDHHQSNLCFRYHTHALAASLDNRFFIASDSYSHLG-GWLEGAFMSALNAVAGLIV 677
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 32.2 bits (74), Expect = 0.32
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 62 DLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLIT 102
DL + + + VT ++ V G + SA L+
Sbjct: 113 DLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSAR-FLVV 153
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 31.8 bits (73), Expect = 0.37
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107
+ +L+ V + + NG +V GS D ++ +++GV
Sbjct: 240 NHDVELVFEDGVDAL---EENGAVVRLKSGSVIQTDMLI--LAIGV 280
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 31.4 bits (72), Expect = 0.40
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLI-TVSLGVFKSDLITFVPPLP 120
K++ ++ T I D N LVT G + +K++I + S+ +P
Sbjct: 74 KNNIKVITSEFATSI---DPNNKLVTLKSGEKIKYEKLIIASGSI--------ANKIKVP 122
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 31.4 bits (72), Expect = 0.41
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLIT 102
+LL +VT I + + V +DG D++++
Sbjct: 72 AQNIQLLGGTQVTAI---NRDRQQVILSDGRALDYDRLVLA 109
Score = 29.9 bits (68), Expect = 1.3
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 64 GKKLLLNKEVTKINWEDANGVL--VTCADGSQYSADKVLITVSLGV 107
G + +V + V C DG++ AD V+ +G+
Sbjct: 205 GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVI--AGIGL 248
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 31.4 bits (72), Expect = 0.49
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLIT 102
D ++ L EV + D V DGS K++
Sbjct: 77 DKAVEMKLGAEVVSL---DPAAHTVKLGDGSAIEYGKLIWA 114
Score = 31.4 bits (72), Expect = 0.53
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107
G L + I + V DGS AD V+ V +G+
Sbjct: 208 GVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVI--VGIGI 249
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 30.9 bits (71), Expect = 0.62
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
G ++ V+++ N V +G AD+V++
Sbjct: 246 GISIIYEATVSQVQ-STENCYNVVLTNGQTICADRVMLAT 284
Score = 28.3 bits (64), Expect = 5.1
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 65 KKLLLNKEVTKIN----WEDANGVLVTCADGSQYSADKVLITV 103
++ L N V + D + + ++ G + SA+K+LI
Sbjct: 121 REGLQNSNVHIYESRAVFVDEHTLELS-VTGERISAEKILIAT 162
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 31.0 bits (71), Expect = 0.68
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLIT 102
+ +L EVT + D ++ DG+ SAD ++I
Sbjct: 69 EARIDMLTGPEVTAL---DVQTRTISLDDGTTLSADAIVIA 106
Score = 30.2 bits (69), Expect = 1.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107
G ++ L V + + V +DG + AD L + +G
Sbjct: 199 GVQVELGTGVVGFS-GEGQLEQVMASDGRSFVADSAL--ICVGA 239
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 30.6 bits (70), Expect = 0.84
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107
G ++ T+I E V +DG+ D V+ V +GV
Sbjct: 198 GIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVV--VGVGV 239
Score = 30.2 bits (69), Expect = 0.98
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 68 LLNKEVTKINWEDANGVLVTCADGSQYSADKVLIT 102
L++ + I D G + A G+ +++
Sbjct: 74 LISDRMVSI---DREGRKLLLASGTAIEYGHLVLA 105
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 30.6 bits (70), Expect = 0.87
Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 3/41 (7%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLIT 102
+ LL D V +DG +++
Sbjct: 71 APEVEWLLGVTAQSF---DPQAHTVALSDGRTLPYGTLVLA 108
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 30.3 bits (69), Expect = 1.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 66 KLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFK 109
++LN+ VTK D G+ Y + VLI LG F+
Sbjct: 90 DVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFE 133
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 30.2 bits (69), Expect = 1.1
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 66 KLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFK 109
L + + E + VT + G+ Y+A V+I +G F+
Sbjct: 81 VYSLGERAETLEREG-DLFKVTTSQGNAYTAKAVIIAAGVGAFE 123
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 30.4 bits (69), Expect = 1.1
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 176 GAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFW---THDDEKNPLFKDTAVVDGAPWI 232
AP+ ++ V + + P+ G++ + T+D P++ +T + +
Sbjct: 136 DAPYKPYVDTYNNRGKVAWNEWCPPERRHGFDHWIAYGTYDYHLKPMYWNTTAPRDSFYY 195
Query: 233 VDLYGFYLTTEDPLTFL 249
V+ +G + ++
Sbjct: 196 VNQWGPEYEASKAIEYI 212
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 29.8 bits (68), Expect = 1.2
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 68 LLNKEVTKINWEDANGVLVTCADGSQYSADKVLIT 102
K V I + + D ++Y A++VL+
Sbjct: 78 YYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLA 112
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for
structural genomics, JCSG; 2.12A {Bacteroides fragilis
nctc 9343}
Length = 430
Score = 30.0 bits (67), Expect = 1.3
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 204 RGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLY-------GFYLTTEDPLTFLGWISGAS 256
R +N+FW + + L ++ +DG GF + G++S
Sbjct: 28 RTFNYFWDAAEPNSGLARERYHMDGEYPAGGPEIVTSGGSGFGIMAILAGIDRGYVSREE 87
Query: 257 A--RFMETLS 264
R + +
Sbjct: 88 GLRRMEKIVG 97
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 30.1 bits (68), Expect = 1.4
Identities = 7/53 (13%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 49 KLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLI 101
+LL + T ++ ++++ + +T + +AD ++I
Sbjct: 132 AILLNSLENDT-------VIWDRKLVMLE-PGKKKWTLTFENKPSETAD-LVI 175
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 29.8 bits (68), Expect = 1.4
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 63 LGKKLLLNKEVTKINWEDANGVLVT--CADGSQ--YSADKVLITV 103
L + N VT++ + V DGS+ + V++
Sbjct: 224 LKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAA 268
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 29.8 bits (68), Expect = 1.5
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV 107
LN+E+ IN G +T G D ++ +G
Sbjct: 201 KREIPYRLNEEINAIN-----GNEITFKSGKVEHYDMII--EGVGT 239
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 29.6 bits (67), Expect = 1.6
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLI 101
LG + +N E D G +T G AD +++
Sbjct: 119 ALGVDISVNSEAVAA---DPVGR-LTLQTGEVLEAD-LIV 153
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 29.4 bits (67), Expect = 1.9
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 65 KKLLLNKEVTKIN----WEDANGVLVTCADGSQ-YSADKVLITV 103
+ L +K+V IN + D++ +L G + +A +I V
Sbjct: 115 RVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAV 158
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 29.0 bits (66), Expect = 2.5
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 65 KKLLLNKEVTKIN----WEDANGVLVTCADGSQYSADKVLITV 103
+K L N ++ N V + A G +A++++I V
Sbjct: 100 RKGLANAGAEILDTRAELAGPNTVKLL-ASGKTVTAERIVIAV 141
Score = 27.5 bits (62), Expect = 7.9
Identities = 6/40 (15%), Positives = 18/40 (45%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
G ++L + ++ + + T + AD+V++ +
Sbjct: 225 GIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLAL 264
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 28.7 bits (65), Expect = 3.2
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
G +++ N+ K++ VT G D V++ +
Sbjct: 249 GIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAI 288
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 28.3 bits (64), Expect = 4.6
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 65 KKLLLNKEVTKIN----WEDANGVLVTCADGS--QYSADKVLITV 103
+ L +++V N + D + V G SA+ ++I
Sbjct: 111 RVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIAT 155
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 28.2 bits (64), Expect = 4.7
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 65 KKLLLNKEVTKIN----WEDANGVLVTCADGSQYSADKVLITV 103
+ L + I + + G +Y+A +LI
Sbjct: 115 QNNLTKSHIEIIRGHAAFTSDPKPTIE-VSGKKYTAPHILIAT 156
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 28.3 bits (64), Expect = 5.2
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
G ++L + + +++ D ++T G ADK+L+
Sbjct: 230 GIEVLEHTQASQVAHMD-GEFVLTTTHGEL-RADKLLVAT 267
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 28.4 bits (64), Expect = 5.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 311 TLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNE 346
TLT +K++ ++ +E + QVLLFA AS
Sbjct: 333 TLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMASRV 368
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 27.9 bits (63), Expect = 6.1
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
G + ++ K+ V G++ D V++ +
Sbjct: 245 GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAI 284
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 27.5 bits (62), Expect = 6.8
Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 68 LLNKEVTKINWEDANGVLVTCADGSQYSADKVLI 101
+ VT +V G + +A ++++
Sbjct: 74 WVEGRVTDAKGSF-GEFIVEIDGGRRETAGRLIL 106
>1ut1_A DRAA, DR hemagglutinin structural subunit; adhesin, DRAE, fimbrial
adhesin, UPEC, DAEC; 1.7A {Escherichia coli} SCOP:
b.2.3.6 PDB: 1usq_A* 2jkj_A* 2jkl_A* 2jkn_A* 2w5p_A
1usz_A 1ut2_A
Length = 148
Score = 27.1 bits (59), Expect = 6.9
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 200 PDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
D+ FF D+ ++ L+ + D + W D FY
Sbjct: 71 TDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKN 112
>3rty_A Period circadian protein; PAS domain, signalling, timeless,
circadian clock protein; 2.85A {Drosophila melanogaster}
PDB: 1wa9_A 3gec_A
Length = 339
Score = 27.3 bits (60), Expect = 7.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 257 ARFMETLSDEQIKTE 271
A FMETL DE + +
Sbjct: 322 ASFMETLMDEVSRAD 336
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 27.5 bits (62), Expect = 8.2
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
G +L N + + + DG + D ++ +
Sbjct: 222 GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI 261
>1rxl_A AFAE-DSC, afimbrial adhesin AFA-III, AFA-III, AFAE-3; DAF,
afimbrial sheath, DAEC, UPEC, IG-like domain, donor
strand complemented; NMR {Escherichia coli} SCOP:
b.2.3.6 PDB: 2ixq_B 2ver_A*
Length = 156
Score = 26.7 bits (58), Expect = 8.3
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 200 PDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
D+ FF D+ ++ L+ + +D + W D FY
Sbjct: 59 TDNFEQGKFFLISDNNRDKLYVNIRPMDNSAWTTDNGVFYKN 100
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 27.5 bits (62), Expect = 8.7
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 65 KKLLLNKEVTKIN----WEDANGVLVTCADGSQYSADKVLITV 103
+ +T+++ + DA+ + V +G + SAD ++I
Sbjct: 99 DGYVERLGITRVDGHARFVDAHTIEV---EGQRLSADHIVIAT 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.437
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,898,904
Number of extensions: 350905
Number of successful extensions: 862
Number of sequences better than 10.0: 1
Number of HSP's gapped: 808
Number of HSP's successfully gapped: 93
Length of query: 373
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 278
Effective length of database: 4,049,298
Effective search space: 1125704844
Effective search space used: 1125704844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)