RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7654
(373 letters)
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays)
[TaxId: 4577]}
Length = 112
Score = 76.0 bits (186), Expect = 1e-17
Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
+ K+F++FP+K+WP+ F + + F
Sbjct: 2 MAVYTKIFLKFPRKFWPEGKGREFFLYASSRR--------------GYYGVWQEFEKQYP 47
Query: 244 DPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHF 303
D L ++ +R +E SDEQ K E M+ R +P+ + + W +++ +
Sbjct: 48 DANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFP-GKDVPDATDILVPRWWSDRFY 106
Query: 304 KGSYS 308
KG++S
Sbjct: 107 KGTFS 111
Score = 39.0 bits (90), Expect = 1e-04
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 132 LGTVDKVFVRFPQKWWPDDIRGYNFFW-THDDKKNPLFKDTAVVDGAPWISLFL 184
+ K+F++FP+K+WP+ F + + ++++ + L
Sbjct: 2 MAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVT 55
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 71.0 bits (173), Expect = 7e-16
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 16/127 (12%)
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
LG+V K V + + +W Y D E+ +
Sbjct: 2 LGSVIKCIVYYKEPFWRKK--DYCGTMIIDGEE-------------APVAYTLDDTKPEG 46
Query: 244 DPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHF 303
+ +G+I AR + L+ E+ + + + + EP +W ++
Sbjct: 47 NYAAIMGFILAHKARKLARLTKEERLKKLCELYAKV-LGSLEALEPVHYEEKNWCEEQYS 105
Query: 304 KGSYSIY 310
G Y+ Y
Sbjct: 106 GGCYTTY 112
Score = 34.0 bits (77), Expect = 0.005
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 132 LGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
LG+V K V + + +W Y D ++ P+
Sbjct: 2 LGSVIKCIVYYKEPFWRKK--DYCGTMIIDGEEAPVA 36
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1,
LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 66.8 bits (162), Expect = 2e-14
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 18/124 (14%)
Query: 185 GTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTED 244
G ++KV + F + +W V + + +L+ F+ +
Sbjct: 3 GNLNKVVLCFDRVFWDPSVNLFGHVGSTT----------------ASRGELFLFWNLYKA 46
Query: 245 PLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFK 304
P+ L ++G +A ME +SD+ I + + G++ +P+P S W + +
Sbjct: 47 PI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADPWAR 104
Query: 305 GSYS 308
GSYS
Sbjct: 105 GSYS 108
Score = 36.3 bits (83), Expect = 8e-04
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 133 GTVDKVFVRFPQKWWPDDIRGYNFFWTHDD 162
G ++KV + F + +W + + +
Sbjct: 3 GNLNKVVLCFDRVFWDPSVNLFGHVGSTTA 32
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 449
Score = 63.0 bits (151), Expect = 1e-11
Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 6/177 (3%)
Query: 194 FPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWIS 253
+ W DD + + T + +
Sbjct: 275 SLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNT 334
Query: 254 GASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSY-SIYTL 312
++++ D + T + + A +P W T+ +
Sbjct: 335 RSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPE-----WKTSAVQRMVAAGSSGN 389
Query: 313 TTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369
D M + Q L FAGE + + TV+GA+ +G REA RI
Sbjct: 390 DYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQ 446
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 59.4 bits (142), Expect = 2e-10
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 11/140 (7%)
Query: 39 WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADK 98
GG Q+ + LG ++ L + V I+ VLV + Y A
Sbjct: 196 TTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTR-ENVLVETLNHEMYEAKY 254
Query: 99 VLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFW 158
V+ + + I F PPLP + +I +F + + R ++ ++
Sbjct: 255 VISAIPPTLGMK--IHFNPPLPMMRNQMITRVFPPGILTQYGRVLRQPVD------RIYF 306
Query: 159 --THDDKKNPLFKDTAVVDG 176
T + + AV G
Sbjct: 307 AGTETATHWSGYMEGAVEAG 326
Score = 30.1 bits (66), Expect = 0.45
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 337 LLFAGEASNEHQYGTVNGAVETGWREADRILK 368
+ FAG + H G + GAVE G R A IL
Sbjct: 304 IYFAGTETATHWSGYMEGAVEAGERAAREILH 335
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper
(Calloselasma rhodostoma) [TaxId: 8717]}
Length = 113
Score = 55.6 bits (133), Expect = 2e-10
Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 18/126 (14%)
Query: 185 GTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTED 244
+ K+F+ K+W DD G + + D P Y + T
Sbjct: 3 RSGTKIFLTCTTKFWEDD--GIHGGKSTTDL--------------PSRFIYYPNHNFTNG 46
Query: 245 PLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLG--ANYTIPEPSRVFHSSWGTNKH 302
+ + G A F + L + W +K+
Sbjct: 47 VGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKY 106
Query: 303 FKGSYS 308
G +
Sbjct: 107 AMGGIT 112
Score = 30.9 bits (69), Expect = 0.078
Identities = 11/60 (18%), Positives = 20/60 (33%)
Query: 133 GTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFV 192
+ K+F+ K+W DD T + + + +G I + D F
Sbjct: 3 RSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFF 62
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 56.9 bits (135), Expect = 1e-09
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 75 KINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGT 134
+ GV V D S YSAD V+++ SLGV +SDLI F P LP K I +
Sbjct: 234 REIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVG 293
Query: 135 VDKVFVRFPQKWWPDD 150
V++ + Q P
Sbjct: 294 VNR--YEYDQLRAPVG 307
Score = 31.8 bits (70), Expect = 0.11
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 337 LLFAGEASNEHQYGTVNGAVETGWREADRIL 367
+ F GE ++EH G V+GA +G A+ ++
Sbjct: 309 VYFTGEHTSEHYNGYVHGAYLSGIDSAEILI 339
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 54.0 bits (128), Expect = 1e-08
Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 13/179 (7%)
Query: 2 DFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPI 61
+ ++D + Y SF+ +D + + + + ++P
Sbjct: 188 KEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEI-VDGMDKLPTAMYR 246
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVT----CADGSQYSADKVLITVSLGVFKSDLITFVP 117
D+ K+ N +V KI D V V + +AD V++ + + LI F P
Sbjct: 247 DIQDKVHFNAQVIKIQQND-QKVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKFNP 303
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDG 176
PL P+K + + S+F F F +G +F + + D+ + G
Sbjct: 304 PLLPKKAHALRSVFTP---YQFQHFSDPLT--ASQGRIYFAGEYTAQAHGWIDSTIKSG 357
Score = 27.0 bits (58), Expect = 4.3
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 323 DLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRI 366
PL+ QG+ + FAGE + + +G ++ +++G R A +
Sbjct: 324 HFSDPLTASQGR--IYFAGEYTAQA-HGWIDSTIKSGLRAARDV 364
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 36.7 bits (84), Expect = 0.001
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 22 AKRYNSFVTHEGCEDTVWKKG--GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE 79
A G E G +L L + G K++ N V +
Sbjct: 53 ACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVG-V 111
Query: 80 DANGVLVTCADGSQYSADKVLITVSLGV 107
+ +L+ DG + D ++ V G+
Sbjct: 112 SSGKLLIKLKDGRKVETDHIVAAV--GL 137
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 37.5 bits (85), Expect = 0.002
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 6/89 (6%)
Query: 17 WFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKI 76
Y V G ++ G G + + + G +L+ + ++
Sbjct: 208 PSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLS-----AIYGGTYMLDTPIDEV 262
Query: 77 NWEDANG-VLVTCADGSQYSADKVLITVS 104
++ G + A V+ +
Sbjct: 263 LYKKDTGKFEGVKTKLGTFKAPLVIADPT 291
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma
cruzi [TaxId: 5693]}
Length = 117
Score = 35.5 bits (81), Expect = 0.002
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 17 WFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKI 76
+ K + VT + +G + + L KQ+ G ++L + K+
Sbjct: 37 GIFNAYKPKDGQVTLCYRGEM-ILRGFDHTLREELTKQL-----TANGIQILTKENPAKV 90
Query: 77 NWEDANGVLVTCADGSQYSADKVLITV 103
VT G + D V++ +
Sbjct: 91 ELNADGSKSVTFESGKKMDFDLVMMAI 117
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli
[TaxId: 562]}
Length = 116
Score = 35.5 bits (81), Expect = 0.002
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
G +L N + + + DG + D ++ +
Sbjct: 74 AEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI 115
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 36.7 bits (83), Expect = 0.004
Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 12/123 (9%)
Query: 25 YNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV 84
+ + GG ++ L LG + V + ED G
Sbjct: 202 LPAGTAPKLSGALSTFDGGLQVLIDALAAS--------LGDAAHVGARVEGLARED-GGW 252
Query: 85 LVTCADGSQ---YSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVR 141
+ + + S +V++ L L I L V +
Sbjct: 253 RLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVAAIDAA 312
Query: 142 FPQ 144
+
Sbjct: 313 LQR 315
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia
fasciculata [TaxId: 5656]}
Length = 117
Score = 32.9 bits (74), Expect = 0.019
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 67 LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
+ ++ K+ V G++ D V++ +
Sbjct: 79 VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAI 115
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase,
BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 121
Score = 30.1 bits (67), Expect = 0.17
Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 17 WFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKI 76
+A+ V+ + + + + + + G L + VT
Sbjct: 44 ELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYH-----AAQGVDLRFERSVTGS 98
Query: 77 NWEDANGVLVTCADGSQYSADKVLITV 103
+V DG++ +AD V++ +
Sbjct: 99 V-----DGVVLLDDGTRIAADMVVVGI 120
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis
[TaxId: 1351]}
Length = 123
Score = 29.8 bits (66), Expect = 0.24
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
+ + V + E V D + Y AD V++ V
Sbjct: 86 NITIATGETVERY--EGDGRVQKVVTDKNAYDADLVVVAV 123
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas
putida [TaxId: 303]}
Length = 133
Score = 29.1 bits (64), Expect = 0.42
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 66 KLLLNKEVTKINWEDANGVL--VTCADGSQYSADKVLITV 103
+ +V + V C DG++ AD V+ +
Sbjct: 93 DIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGI 132
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl
transferase 2, TUTase 2, RET2 {Trypanosoma brucei
[TaxId: 5691]}
Length = 183
Score = 26.7 bits (58), Expect = 3.2
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 5/87 (5%)
Query: 191 FVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLG 250
F F + Y + ++ + + + EDP +G
Sbjct: 85 FFIFYAHHFD-----YEREVVSLNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVG 139
Query: 251 WISGASARFMETLSDEQIKTESMKAFR 277
R + + +K E ++A +
Sbjct: 140 TGGLNLVRHLHPAKFQLVKQEFLRAAQ 166
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus
sp. pcc 7942 [TaxId: 1140]}
Length = 406
Score = 27.4 bits (60), Expect = 3.4
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 144 QKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDV 203
+WWP + + HD K NP+ D + + L + + Q WWP D
Sbjct: 3 AEWWPKALN-LDILSQHDRKTNPMGPDFNYQEEVQKLDAALKQDLQALMTDSQDWWPADW 61
Query: 204 RGY 206
Y
Sbjct: 62 GHY 64
>d2nvwa2 d.81.1.5 (A:155-373) Galactose/lactose metabolism
regulatory protein GAL80 {Yeast (Kluyveromyces lactis)
[TaxId: 28985]}
Length = 219
Score = 26.7 bits (57), Expect = 3.9
Identities = 10/106 (9%), Positives = 29/106 (27%), Gaps = 2/106 (1%)
Query: 124 KNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKK-NPLFKDTAVVDGAPWISL 182
K +I +G ++ + + W+ + + + +D + L ++ +
Sbjct: 9 KELISEGCIGDINSIEISGNGGWYGYERPMRSPEYLYDIESGVNLISNSFGHTIDVLQYI 68
Query: 183 FLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
K+ P + + D + G
Sbjct: 69 TGSYFQKINAMI-SNNIPTQFLLDENGKRTKETISKTCPDHLLFQG 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.437
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,483,061
Number of extensions: 70693
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 31
Length of query: 373
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,213,086
Effective search space: 346942596
Effective search space used: 346942596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)