Query psy7655
Match_columns 110
No_of_seqs 140 out of 1022
Neff 8.4
Searched_HMMs 46136
Date Sat Aug 17 00:00:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02568 polyamine oxidase 99.9 3.6E-27 7.9E-32 182.7 10.1 106 1-109 400-533 (539)
2 PLN02676 polyamine oxidase 99.9 5E-27 1.1E-31 180.1 9.5 98 2-109 374-471 (487)
3 PLN03000 amine oxidase 99.9 1.1E-26 2.4E-31 186.2 9.7 103 1-109 518-621 (881)
4 KOG0685|consensus 99.9 2.1E-26 4.4E-31 173.4 8.0 106 1-109 382-489 (498)
5 PLN02976 amine oxidase 99.9 7.9E-26 1.7E-30 186.9 9.3 101 1-109 1084-1184(1713)
6 PLN02268 probable polyamine ox 99.9 1.4E-25 3E-30 169.0 9.2 97 2-109 336-432 (435)
7 PLN02328 lysine-specific histo 99.9 8.7E-25 1.9E-29 174.8 9.4 103 1-109 574-677 (808)
8 PLN02529 lysine-specific histo 99.9 2.7E-24 5.8E-29 171.0 9.0 102 1-109 494-596 (738)
9 KOG0029|consensus 99.9 9.6E-22 2.1E-26 151.3 8.6 101 1-109 357-457 (501)
10 COG1231 Monoamine oxidase [Ami 99.8 3.9E-21 8.4E-26 144.6 7.3 99 1-109 346-445 (450)
11 PF01593 Amino_oxidase: Flavin 99.8 5.1E-19 1.1E-23 129.8 8.2 99 2-108 352-450 (450)
12 TIGR02731 phytoene_desat phyto 99.6 4.5E-16 9.8E-21 118.0 7.4 91 3-107 360-452 (453)
13 TIGR03467 HpnE squalene-associ 99.5 2.3E-13 5E-18 101.2 8.0 92 2-109 328-419 (419)
14 PLN02612 phytoene desaturase 99.4 3.1E-13 6.7E-18 105.8 6.6 94 2-109 450-546 (567)
15 TIGR02732 zeta_caro_desat caro 99.1 9.9E-11 2.1E-15 90.0 6.6 90 3-108 385-474 (474)
16 PLN02487 zeta-carotene desatur 99.1 3.3E-10 7.1E-15 89.0 7.8 91 3-109 461-551 (569)
17 PRK07233 hypothetical protein; 99.1 2.5E-10 5.5E-15 85.5 6.2 91 3-109 339-429 (434)
18 PRK11883 protoporphyrinogen ox 99.0 2E-09 4.4E-14 81.1 8.0 90 2-109 361-450 (451)
19 PRK12416 protoporphyrinogen ox 98.9 7.1E-09 1.5E-13 79.0 7.8 89 2-109 369-459 (463)
20 PLN02576 protoporphyrinogen ox 98.9 9E-09 1.9E-13 79.0 7.7 94 2-109 392-485 (496)
21 PRK07208 hypothetical protein; 98.4 6.5E-07 1.4E-11 68.5 6.6 90 3-110 368-460 (479)
22 TIGR00562 proto_IX_ox protopor 98.4 2.7E-06 5.9E-11 64.7 8.7 87 2-109 368-458 (462)
23 COG3349 Uncharacterized conser 97.7 4.5E-05 9.7E-10 59.1 4.6 90 3-109 372-461 (485)
24 COG3380 Predicted NAD/FAD-depe 97.6 0.00014 2.9E-09 53.0 5.1 85 3-110 246-330 (331)
25 TIGR02730 carot_isom carotene 96.3 0.013 2.8E-07 45.4 6.2 94 6-109 393-490 (493)
26 COG1232 HemY Protoporphyrinoge 95.5 0.079 1.7E-06 41.1 7.2 91 2-109 354-444 (444)
27 TIGR02734 crtI_fam phytoene de 95.4 0.052 1.1E-06 42.0 5.9 32 76-109 459-490 (502)
28 TIGR02733 desat_CrtD C-3',4' d 94.9 0.13 2.9E-06 39.7 7.1 32 76-109 459-490 (492)
29 TIGR03862 flavo_PP4765 unchara 87.4 0.65 1.4E-05 35.3 3.1 33 76-108 337-372 (376)
30 KOG1276|consensus 83.9 5.2 0.00011 31.3 6.4 90 3-108 401-490 (491)
31 PF03486 HI0933_like: HI0933-l 79.0 2.3 5.1E-05 32.6 3.1 30 76-105 376-408 (409)
32 TIGR01292 TRX_reduct thioredox 69.5 6.4 0.00014 27.7 3.3 35 74-109 264-298 (300)
33 PRK05335 tRNA (uracil-5-)-meth 68.1 7.1 0.00015 30.5 3.4 27 76-105 331-357 (436)
34 PLN00128 Succinate dehydrogena 67.7 44 0.00096 27.2 7.9 36 67-108 421-463 (635)
35 TIGR00275 flavoprotein, HI0933 67.4 3.7 8E-05 31.1 1.7 29 76-104 368-399 (400)
36 COG2081 Predicted flavoprotein 65.0 6.7 0.00014 30.3 2.7 34 76-109 369-405 (408)
37 PRK12810 gltD glutamate syntha 61.6 13 0.00029 28.7 3.9 33 74-108 429-461 (471)
38 PRK12831 putative oxidoreducta 61.1 13 0.00028 28.9 3.7 32 75-108 426-457 (464)
39 PRK10157 putative oxidoreducta 60.5 12 0.00027 28.5 3.5 34 76-109 295-333 (428)
40 PRK04965 NADH:flavorubredoxin 57.2 16 0.00035 27.2 3.5 36 74-109 264-301 (377)
41 TIGR01816 sdhA_forward succina 56.1 18 0.00039 28.8 3.8 33 76-108 354-393 (565)
42 PRK12769 putative oxidoreducta 55.2 19 0.00041 29.2 3.9 34 74-109 616-649 (654)
43 PRK01322 6-carboxyhexanoate--C 54.6 30 0.00064 25.0 4.3 50 29-84 171-221 (242)
44 TIGR01204 bioW 6-carboxyhexano 54.5 30 0.00066 24.8 4.3 49 29-83 164-213 (232)
45 TIGR01316 gltA glutamate synth 53.0 21 0.00047 27.4 3.7 33 75-109 415-447 (449)
46 TIGR00137 gid_trmFO tRNA:m(5)U 53.0 19 0.00041 28.1 3.4 30 76-107 330-362 (433)
47 PRK09078 sdhA succinate dehydr 52.9 22 0.00048 28.6 3.9 37 66-108 382-425 (598)
48 PRK12771 putative glutamate sy 52.2 21 0.00046 28.3 3.6 33 74-108 408-440 (564)
49 PRK12809 putative oxidoreducta 50.8 23 0.0005 28.7 3.7 34 74-109 599-632 (639)
50 PRK10015 oxidoreductase; Provi 50.2 24 0.00052 27.0 3.6 34 76-109 295-333 (429)
51 COG1635 THI4 Ribulose 1,5-bisp 48.8 14 0.00031 26.6 2.0 34 76-109 219-257 (262)
52 PRK08205 sdhA succinate dehydr 48.0 29 0.00064 27.8 3.8 33 76-108 376-415 (583)
53 PRK02289 4-oxalocrotonate taut 47.1 34 0.00074 18.6 3.0 36 8-46 19-54 (60)
54 PRK11749 dihydropyrimidine deh 46.4 30 0.00065 26.6 3.6 32 75-108 417-448 (457)
55 TIGR02028 ChlP geranylgeranyl 46.4 31 0.00067 26.1 3.6 34 76-109 270-306 (398)
56 PF03744 BioW: 6-carboxyhexano 46.1 41 0.0009 24.2 4.0 52 29-86 171-223 (239)
57 PTZ00139 Succinate dehydrogena 45.5 30 0.00066 28.0 3.6 33 76-108 403-442 (617)
58 cd00491 4Oxalocrotonate_Tautom 45.5 46 0.001 17.5 3.4 37 7-46 17-53 (58)
59 PRK06452 sdhA succinate dehydr 45.0 31 0.00066 27.6 3.5 33 76-108 361-400 (566)
60 TIGR03315 Se_ygfK putative sel 44.9 33 0.00071 29.8 3.8 34 74-109 804-837 (1012)
61 PRK05192 tRNA uridine 5-carbox 43.5 35 0.00076 27.9 3.7 30 76-107 360-392 (618)
62 PRK12814 putative NADPH-depend 43.2 38 0.00081 27.6 3.8 33 74-108 465-497 (652)
63 PRK06069 sdhA succinate dehydr 42.7 38 0.00082 27.0 3.7 37 66-108 368-411 (577)
64 TIGR01317 GOGAT_sm_gam glutama 42.4 34 0.00074 26.7 3.4 33 74-108 443-475 (485)
65 PF01134 GIDA: Glucose inhibit 42.2 35 0.00076 26.3 3.3 28 76-106 356-383 (392)
66 PRK12778 putative bifunctional 42.0 36 0.00079 28.1 3.6 34 74-109 714-747 (752)
67 TIGR01318 gltD_gamma_fam gluta 41.9 42 0.00092 26.0 3.8 34 74-109 430-463 (467)
68 PF08621 RPAP1_N: RPAP1-like, 41.8 23 0.0005 19.0 1.7 20 1-20 12-31 (49)
69 TIGR00292 thiazole biosynthesi 41.2 25 0.00053 25.1 2.3 34 76-109 213-251 (254)
70 PRK12775 putative trifunctiona 41.0 41 0.00089 29.0 3.8 33 74-108 719-751 (1006)
71 PRK04176 ribulose-1,5-biphosph 41.0 24 0.00051 25.2 2.2 34 76-109 214-252 (257)
72 PF10509 GalKase_gal_bdg: Gala 40.6 4.4 9.5E-05 22.0 -1.3 14 76-89 20-33 (52)
73 PRK12779 putative bifunctional 40.3 35 0.00076 29.3 3.3 33 74-108 591-623 (944)
74 COG1206 Gid NAD(FAD)-utilizing 40.3 26 0.00056 26.9 2.3 33 74-108 333-368 (439)
75 COG0644 FixC Dehydrogenases (f 39.8 46 0.00099 25.1 3.7 34 76-109 269-305 (396)
76 smart00540 LEM in nuclear memb 39.2 21 0.00045 18.8 1.2 15 1-15 3-17 (44)
77 TIGR00013 taut 4-oxalocrotonat 39.1 50 0.0011 17.8 2.9 38 7-47 18-55 (63)
78 TIGR02023 BchP-ChlP geranylger 38.8 51 0.0011 24.6 3.8 34 76-109 264-300 (388)
79 PF11080 DUF2622: Protein of u 38.3 36 0.00078 21.0 2.4 38 1-41 57-94 (96)
80 PRK05329 anaerobic glycerol-3- 36.8 34 0.00074 26.5 2.6 69 35-109 344-418 (422)
81 PRK06116 glutathione reductase 36.7 64 0.0014 24.7 4.1 34 74-109 294-327 (450)
82 PRK09853 putative selenate red 36.4 52 0.0011 28.6 3.7 34 74-109 806-839 (1019)
83 PRK12770 putative glutamate sy 36.4 61 0.0013 23.9 3.8 32 75-108 315-346 (352)
84 PRK00745 4-oxalocrotonate taut 36.1 52 0.0011 17.6 2.7 37 7-46 18-54 (62)
85 smart00539 NIDO Extracellular 35.4 87 0.0019 20.7 4.1 43 5-48 20-62 (152)
86 TIGR01424 gluta_reduc_2 glutat 35.1 70 0.0015 24.5 4.0 34 74-109 292-325 (446)
87 PRK05945 sdhA succinate dehydr 35.0 59 0.0013 26.0 3.7 33 76-108 371-410 (575)
88 PF01361 Tautomerase: Tautomer 34.5 62 0.0013 17.3 2.8 38 7-47 17-54 (60)
89 PRK11187 replication initiatio 34.3 21 0.00044 24.6 0.9 11 74-84 116-126 (182)
90 COG1942 Uncharacterized protei 34.3 78 0.0017 18.1 3.2 42 6-50 18-59 (69)
91 PRK13984 putative oxidoreducta 33.7 61 0.0013 26.0 3.6 32 74-108 567-598 (604)
92 COG1424 BioW Pimeloyl-CoA synt 33.5 71 0.0015 22.5 3.4 68 10-86 151-219 (239)
93 PLN00093 geranylgeranyl diphos 33.4 61 0.0013 25.1 3.5 34 76-109 309-345 (450)
94 TIGR01421 gluta_reduc_1 glutat 33.2 79 0.0017 24.3 4.1 34 74-109 294-327 (450)
95 PF13821 DUF4187: Domain of un 32.1 58 0.0013 17.8 2.4 21 2-22 8-28 (55)
96 PRK09077 L-aspartate oxidase; 31.7 68 0.0015 25.4 3.6 37 66-108 363-406 (536)
97 PRK10262 thioredoxin reductase 31.6 33 0.00073 24.8 1.7 34 74-108 278-311 (321)
98 PRK13748 putative mercuric red 31.6 73 0.0016 25.1 3.7 33 74-108 394-426 (561)
99 COG1252 Ndh NADH dehydrogenase 31.5 81 0.0018 24.5 3.8 35 74-108 290-328 (405)
100 PRK08958 sdhA succinate dehydr 31.3 73 0.0016 25.7 3.7 33 76-108 381-420 (588)
101 PF10041 DUF2277: Uncharacteri 30.9 69 0.0015 18.9 2.6 19 4-22 15-33 (78)
102 PRK07512 L-aspartate oxidase; 30.6 77 0.0017 25.0 3.7 37 66-108 351-394 (513)
103 cd08213 RuBisCO_large_III Ribu 30.5 2.6E+02 0.0057 21.8 6.5 38 62-103 349-388 (412)
104 PRK12844 3-ketosteroid-delta-1 30.4 86 0.0019 25.0 3.9 38 66-109 504-548 (557)
105 PRK05675 sdhA succinate dehydr 30.2 81 0.0018 25.3 3.8 33 76-108 363-402 (570)
106 PRK07057 sdhA succinate dehydr 30.0 74 0.0016 25.6 3.5 33 76-108 384-423 (591)
107 TIGR01812 sdhA_frdA_Gneg succi 30.0 72 0.0016 25.3 3.4 36 67-108 357-399 (566)
108 PRK02220 4-oxalocrotonate taut 29.8 72 0.0016 17.0 2.6 36 7-45 18-53 (61)
109 TIGR02032 GG-red-SF geranylger 29.4 70 0.0015 22.2 3.1 32 76-107 261-295 (295)
110 PRK07843 3-ketosteroid-delta-1 28.9 82 0.0018 25.1 3.6 38 66-109 511-555 (557)
111 PRK09231 fumarate reductase fl 28.8 87 0.0019 25.2 3.7 37 66-108 368-411 (582)
112 PRK07803 sdhA succinate dehydr 28.6 73 0.0016 25.9 3.3 36 67-108 403-444 (626)
113 PRK14727 putative mercuric red 28.5 91 0.002 24.2 3.8 34 74-109 312-345 (479)
114 PF01900 RNase_P_Rpp14: Rpp14/ 28.4 52 0.0011 19.9 2.0 21 2-22 16-36 (107)
115 PRK06370 mercuric reductase; V 28.3 1.1E+02 0.0023 23.6 4.1 34 74-109 300-333 (463)
116 PRK07818 dihydrolipoamide dehy 28.1 98 0.0021 23.8 3.8 33 74-108 302-334 (466)
117 PTZ00318 NADH dehydrogenase-li 27.5 1.1E+02 0.0023 23.3 3.9 35 74-108 307-344 (424)
118 TIGR01438 TGR thioredoxin and 27.1 1.1E+02 0.0025 23.8 4.0 35 74-109 309-343 (484)
119 PF03925 SeqA: SeqA protein; 26.6 26 0.00057 24.3 0.4 12 74-85 124-135 (190)
120 PRK15458 tagatose 6-phosphate 26.3 62 0.0013 25.3 2.4 54 29-88 42-95 (426)
121 PRK15317 alkyl hydroperoxide r 26.2 64 0.0014 25.3 2.5 34 74-108 475-508 (517)
122 PF07156 Prenylcys_lyase: Pren 25.8 86 0.0019 23.9 3.1 19 90-108 327-345 (368)
123 cd00427 Ribosomal_L29_HIP Ribo 25.7 72 0.0016 17.3 2.0 21 2-22 4-24 (57)
124 TIGR00012 L29 ribosomal protei 25.6 87 0.0019 16.9 2.3 22 1-22 2-23 (55)
125 COG3057 SeqA Negative regulato 25.4 36 0.00079 22.9 0.9 11 74-84 115-125 (181)
126 TIGR01176 fum_red_Fp fumarate 25.1 98 0.0021 24.9 3.4 33 76-108 371-410 (580)
127 PF04485 NblA: Phycobilisome d 25.0 97 0.0021 16.9 2.4 20 2-21 20-39 (53)
128 PRK07639 acyl carrier protein; 24.9 1.1E+02 0.0023 18.1 2.8 19 4-22 1-19 (86)
129 PRK05249 soluble pyridine nucl 24.6 1.1E+02 0.0024 23.3 3.6 32 75-108 302-333 (461)
130 PRK11445 putative oxidoreducta 24.6 1.4E+02 0.003 22.0 4.0 34 76-109 264-300 (351)
131 PRK12834 putative FAD-binding 24.5 1.1E+02 0.0025 24.2 3.7 38 66-109 501-548 (549)
132 TIGR03143 AhpF_homolog putativ 24.5 90 0.002 24.8 3.1 33 75-108 273-305 (555)
133 PRK14694 putative mercuric red 24.4 1.2E+02 0.0027 23.3 3.8 33 74-108 301-333 (468)
134 TIGR03140 AhpF alkyl hydropero 24.3 45 0.00097 26.2 1.4 34 74-108 476-509 (515)
135 PRK15052 D-tagatose-1,6-bispho 24.1 75 0.0016 24.8 2.5 68 29-102 39-108 (421)
136 TIGR03169 Nterm_to_SelD pyridi 23.9 1.3E+02 0.0029 22.0 3.8 35 74-108 270-307 (364)
137 PRK06854 adenylylsulfate reduc 23.7 1.2E+02 0.0027 24.5 3.8 33 76-108 396-428 (608)
138 PRK12449 acyl carrier protein; 23.4 1.2E+02 0.0026 17.1 2.8 19 4-22 1-19 (80)
139 PRK08071 L-aspartate oxidase; 23.1 1.3E+02 0.0028 23.7 3.8 37 66-108 342-385 (510)
140 PRK00306 50S ribosomal protein 22.8 1E+02 0.0023 17.2 2.4 21 2-22 7-27 (66)
141 PRK00089 era GTPase Era; Revie 22.7 98 0.0021 22.1 2.8 37 7-44 250-286 (292)
142 COG1159 Era GTPase [General fu 22.5 58 0.0013 24.2 1.6 42 7-49 253-294 (298)
143 PRK07117 acyl carrier protein; 22.5 1.3E+02 0.0027 17.5 2.8 19 4-22 1-19 (79)
144 PRK06292 dihydrolipoamide dehy 22.5 1.3E+02 0.0028 23.0 3.5 34 74-109 297-330 (460)
145 TIGR01372 soxA sarcosine oxida 22.2 1.3E+02 0.0029 25.9 3.8 31 75-108 438-468 (985)
146 CHL00124 acpP acyl carrier pro 22.1 1.3E+02 0.0029 17.0 2.9 19 4-22 1-19 (82)
147 PLN02661 Putative thiazole syn 22.0 64 0.0014 24.6 1.7 34 76-109 287-325 (357)
148 TIGR02485 CobZ_N-term precorri 21.9 1.5E+02 0.0031 22.6 3.7 38 66-109 384-428 (432)
149 PF11432 DUF3197: Protein of u 21.8 1.1E+02 0.0023 19.4 2.4 28 15-43 2-29 (113)
150 PF12221 HflK_N: Bacterial mem 21.8 93 0.002 16.1 1.9 17 6-22 23-39 (42)
151 PRK06134 putative FAD-binding 21.8 1.4E+02 0.003 24.0 3.7 38 66-109 525-569 (581)
152 cd07052 BMC_like_1_repeat2 Bac 21.7 1.4E+02 0.003 17.7 2.8 25 74-108 54-78 (79)
153 PRK01964 4-oxalocrotonate taut 21.7 1.3E+02 0.0028 16.3 2.6 35 7-44 18-52 (64)
154 PTZ00052 thioredoxin reductase 21.7 1.7E+02 0.0036 23.0 4.0 35 74-109 306-340 (499)
155 PRK06467 dihydrolipoamide dehy 21.7 1.5E+02 0.0032 23.0 3.7 33 74-108 303-335 (471)
156 TIGR00551 nadB L-aspartate oxi 21.5 1.5E+02 0.0032 23.1 3.8 37 66-108 343-386 (488)
157 TIGR01423 trypano_reduc trypan 21.4 1.7E+02 0.0037 22.9 4.1 34 74-109 317-350 (486)
158 PRK13512 coenzyme A disulfide 21.2 1.2E+02 0.0027 23.1 3.2 35 74-108 268-310 (438)
159 PF12652 CotJB: CotJB protein; 21.1 1.9E+02 0.0042 17.0 3.6 34 8-43 40-75 (78)
160 PF05924 SAMP: SAMP Motif; In 21.0 96 0.0021 13.5 1.6 9 6-14 2-10 (20)
161 PLN02507 glutathione reductase 20.9 1.7E+02 0.0036 23.0 3.9 34 74-109 329-362 (499)
162 smart00546 CUE Domain that may 20.9 88 0.0019 15.6 1.7 12 11-22 3-14 (43)
163 PRK06175 L-aspartate oxidase; 20.8 1.2E+02 0.0027 23.2 3.1 37 66-108 341-384 (433)
164 TIGR02374 nitri_red_nirB nitri 20.8 1.5E+02 0.0032 24.8 3.8 36 74-109 263-300 (785)
165 PRK07121 hypothetical protein; 20.6 1.5E+02 0.0032 23.1 3.6 38 66-109 446-489 (492)
166 PRK12845 3-ketosteroid-delta-1 20.5 1.6E+02 0.0034 23.7 3.8 38 66-109 519-563 (564)
167 PF10921 DUF2710: Protein of u 20.4 1.2E+02 0.0027 18.7 2.5 20 2-21 12-31 (109)
168 PRK08626 fumarate reductase fl 20.4 1.5E+02 0.0032 24.4 3.6 33 76-108 387-426 (657)
169 KOG2415|consensus 20.2 66 0.0014 25.7 1.5 34 76-109 379-420 (621)
170 PRK06115 dihydrolipoamide dehy 20.0 1.7E+02 0.0037 22.6 3.8 34 74-109 304-337 (466)
No 1
>PLN02568 polyamine oxidase
Probab=99.94 E-value=3.6e-27 Score=182.65 Aligned_cols=106 Identities=32% Similarity=0.516 Sum_probs=92.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCC---------------------CCccceeeccccCCCCCCCcccCCCCCCccccc
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLGAKYT---------------------IPEPARILTTSWGSNKHFRGSYSIRTLTTERLN 59 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg~~~~---------------------~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~ 59 (110)
+++++++++++.++.+|+++||. .. .++|+.+++++|.+|||++|+|++++||+...
T Consensus 400 ~e~l~~~~~~~~~~~~L~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~- 477 (539)
T PLN02568 400 LEKLSDEEIIRGVQTTLSSFLKR-RVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGD- 477 (539)
T ss_pred HHcCCHHHHHHHHHHHHHHHcCC-cccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChh-
Confidence 46899999999999999999982 22 24799999999999999999999999998764
Q ss_pred ccHHHhcCccCC-------CCCCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 60 TSAAELGAPVSN-------GMGKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 60 ~~~~~l~~p~~~-------~~~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.+.|++|+.+ ....+|||||||||+..++||||||++||+|+|++|++
T Consensus 478 -~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~ 533 (539)
T PLN02568 478 -DLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQ 533 (539)
T ss_pred -HHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHH
Confidence 67899999962 11234899999999999999999999999999999985
No 2
>PLN02676 polyamine oxidase
Probab=99.94 E-value=5e-27 Score=180.09 Aligned_cols=98 Identities=36% Similarity=0.577 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
+.++++++++.++++|+++|| ..++.|+.+..++|.+|||++|+|++++||.... ..+.|++|++ |||||
T Consensus 374 ~~~s~e~~~~~vl~~L~~~~g--~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~--~~~~L~~P~g------ri~FA 443 (487)
T PLN02676 374 EQQPDSETKAEIMEVLRKMFG--PNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRY--EFDQIRAPVG------RVYFT 443 (487)
T ss_pred HhCCHHHHHHHHHHHHHHHhC--CCCCCcceEEecccCCCCCCCcccCCCCCCCChh--HHHHHhCCCC------ceEEe
Confidence 568999999999999999998 5788999999999999999999999999998653 6688999995 99999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
||||+..|+||||||++||+|||++|++
T Consensus 444 Ge~ts~~~~g~~eGA~~SG~RaA~~I~~ 471 (487)
T PLN02676 444 GEHTSEKYNGYVHGAYLAGIDTANDLLE 471 (487)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975
No 3
>PLN03000 amine oxidase
Probab=99.94 E-value=1.1e-26 Score=186.22 Aligned_cols=103 Identities=29% Similarity=0.449 Sum_probs=92.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCC-CCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEE
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLGAK-YTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLL 79 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg~~-~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~ 79 (110)
++.|+++++++.++++|+++|+.. ..+++|+.+.+++|.+|||++|+|+++.||+... +++.|++|+++ +|||
T Consensus 518 le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~--~~d~LaePv~~----GRIf 591 (881)
T PLN03000 518 FETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGD--DYDILAESVGD----GRLF 591 (881)
T ss_pred hhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchH--HHHHHhCcCCC----CcEE
Confidence 467999999999999999999721 2457899999999999999999999999998764 78899999854 5999
Q ss_pred EcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 80 FAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 80 FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
||||||+..|+||||||++||+|||.+|++
T Consensus 592 FAGEaTs~~~~GTVhGAieSGlRAA~eIl~ 621 (881)
T PLN03000 592 FAGEATTRRYPATMHGAFVTGLREAANMAQ 621 (881)
T ss_pred EeehHHhCCCCeeHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999975
No 4
>KOG0685|consensus
Probab=99.93 E-value=2.1e-26 Score=173.41 Aligned_cols=106 Identities=44% Similarity=0.768 Sum_probs=94.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccC--CCCCCCcE
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVS--NGMGKPVL 78 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~--~~~~~~rl 78 (110)
||.||||++++.++..|+++++ +..+|.|+.+++++|.+|||+||||||.++|+... +-..++.|++ +..+++.|
T Consensus 382 me~lsdEev~e~~~~~lr~fl~-n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~--d~~~~a~p~p~~~~~~~p~I 458 (498)
T KOG0685|consen 382 METLSDEEVLEGLTKLLRKFLK-NPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGS--DTGALALPLPLTLVTGRPQI 458 (498)
T ss_pred hhhCCHHHHHHHHHHHHHHhcC-CCCCCCchhhhhhcccCCCccCceeeEeecccccc--ccchhhccCCccccCCCceE
Confidence 6899999999999999999998 68999999999999999999999999999998765 4445555554 34577899
Q ss_pred EEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 79 LFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 79 ~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
.||||||+..++.|+|||++||.|+|++|++
T Consensus 459 ~FAGEaThr~~YsTthGA~~SG~REA~RL~~ 489 (498)
T KOG0685|consen 459 LFAGEATHRTFYSTTHGAVLSGWREADRLLE 489 (498)
T ss_pred EEccccccccceehhhhhHHhhHHHHHHHHH
Confidence 9999999999999999999999999999975
No 5
>PLN02976 amine oxidase
Probab=99.93 E-value=7.9e-26 Score=186.86 Aligned_cols=101 Identities=32% Similarity=0.528 Sum_probs=91.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEE
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLF 80 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~F 80 (110)
++.++++++++.++.+|+++|| ....+.|+.+.+++|..|||++|+|++++||+... ++..|++|+. +||||
T Consensus 1084 iEsLSDEE~Ve~ALe~LrKlFG-~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~--d~d~LAePVg-----gRLFF 1155 (1713)
T PLN02976 1084 GQSMSSSDHVNHALMVLRKLFG-EALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGE--DYDILGRPVE-----NCLFF 1155 (1713)
T ss_pred HhhCCHHHHHHHHHHHHHHHcC-cccccCcceeEEecCCCCCCcCccccCCCCCCCch--HHHHHhCCCC-----CcEEE
Confidence 3578999999999999999999 34568999999999999999999999999998664 6788999997 48999
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 81 AGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 81 AGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|||||+..|+||||||++||.|||.+|+.
T Consensus 1156 AGEATS~~~pGTVHGAIeSG~RAA~eIL~ 1184 (1713)
T PLN02976 1156 AGEATCKEHPDTVGGAMMSGLREAVRIID 1184 (1713)
T ss_pred EehhhhCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999874
No 6
>PLN02268 probable polyamine oxidase
Probab=99.93 E-value=1.4e-25 Score=168.99 Aligned_cols=97 Identities=34% Similarity=0.448 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
++++++++++.++++|+++|| ..++|+.+.+++|.+|||++|+|+++.||+... ..+.|++|++ |||||
T Consensus 336 ~~~~~~e~~~~v~~~L~~~~~---~~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~--~~~~l~~p~~------~l~FA 404 (435)
T PLN02268 336 EKLSDEAAANFAMSQLKKMLP---DATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHD--LYERLRAPVD------NLFFA 404 (435)
T ss_pred HhCCHHHHHHHHHHHHHHHcC---CCCCccEEEecccCCCCCCCccCCCCCCCCCHH--HHHHHhCCCC------CeEEe
Confidence 468999999999999999998 356899999999999999999999999997543 5678999995 89999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
||+|+..++||||||++||+|||++|++
T Consensus 405 Ge~ts~~~~g~~eGA~~sG~raA~~v~~ 432 (435)
T PLN02268 405 GEATSSDFPGSVHGAYSTGVMAAEECRM 432 (435)
T ss_pred eccCCCcccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975
No 7
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.92 E-value=8.7e-25 Score=174.80 Aligned_cols=103 Identities=31% Similarity=0.481 Sum_probs=91.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCC-CCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEE
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLGAK-YTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLL 79 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg~~-~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~ 79 (110)
++.++++++++.++++|+++|+.. ...+.|+.+.+++|.+|||++|+|+++.||+... +++.|++|+++ +|||
T Consensus 574 ~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~--~~~~LaePv~~----GRL~ 647 (808)
T PLN02328 574 FETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGD--DYDILAESVGD----GRVF 647 (808)
T ss_pred HhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchh--HHHHHhccCCC----CCEE
Confidence 357899999999999999999721 1357899999999999999999999999998653 67889999864 5999
Q ss_pred EcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 80 FAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 80 FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
||||||+..++||||||++||+|+|++|++
T Consensus 648 FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~ 677 (808)
T PLN02328 648 FAGEATNKQYPATMHGAFLSGMREAANILR 677 (808)
T ss_pred EEEhhHhCCCCeEhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999974
No 8
>PLN02529 lysine-specific histone demethylase 1
Probab=99.91 E-value=2.7e-24 Score=171.03 Aligned_cols=102 Identities=34% Similarity=0.495 Sum_probs=89.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCC-CCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEE
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLGAK-YTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLL 79 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg~~-~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~ 79 (110)
++.++++++++.++.+|+++||.. ...+.|+.+.+++|.+|||++|+|+++.|++... +++.|++|+. +|||
T Consensus 494 le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~--d~~~La~pv~-----grL~ 566 (738)
T PLN02529 494 FENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGS--DYDILAESVS-----GRLF 566 (738)
T ss_pred HhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchh--HHHHHhCCCC-----CCEE
Confidence 357899999999999999999721 2457899999999999999999999998876543 5678899975 4999
Q ss_pred EcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 80 FAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 80 FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
||||||+..|+||||||++||.|||++|++
T Consensus 567 FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~ 596 (738)
T PLN02529 567 FAGEATTRQYPATMHGAFLSGLREASRILH 596 (738)
T ss_pred EEEHHHhCCCCeEeHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999874
No 9
>KOG0029|consensus
Probab=99.86 E-value=9.6e-22 Score=151.28 Aligned_cols=101 Identities=35% Similarity=0.567 Sum_probs=93.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEE
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLF 80 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~F 80 (110)
++.++++++++.++.+|+++|+ ..+++.|+++.+++|..|+|+.|+|++.+++.... +++.+++|+.+ ||||
T Consensus 357 ~~~~~~~~~~~~~~~~l~k~f~-~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~--~y~~l~~pi~~-----~~ff 428 (501)
T KOG0029|consen 357 VETLSDSEIVKKAMKLLRKVFG-SEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGD--DYDRLAEPIKN-----RVFF 428 (501)
T ss_pred HhcCCHHHHHHHHHHHHHHHhc-cCcCCCccceeeeeecccccCCccccccCCCCChh--HHHHHhccccC-----cEEe
Confidence 3578999999999999999999 57899999999999999999999999999988664 67899999974 8999
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 81 AGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 81 AGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|||+|+..++||||||+.||.++|..|++
T Consensus 429 age~t~~~~~~tm~GA~~sG~~~a~~i~~ 457 (501)
T KOG0029|consen 429 AGEATSRKYPGTMHGAYLSGLRAASDILD 457 (501)
T ss_pred cchhhcccCCCchHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999874
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.84 E-value=3.9e-21 Score=144.56 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=88.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCCcccee-eccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEE
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLGAKYTIPEPARI-LTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLL 79 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~-~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~ 79 (110)
+..|+++++++.++..|.++|| .....+.+. ...+|++|||+.|+|.++.||+... ..+.|..|++ ||+
T Consensus 346 ~~~~~~~~r~~~vl~~l~~~~g--~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~--~~~~l~~p~g------RIh 415 (450)
T COG1231 346 IDALPEAERRQKVLARLAKLFG--DEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTK--LYPTLPAPHG------RIH 415 (450)
T ss_pred EecCCHHHHHHHHHHhHhhhCC--hhhccccccceeeecccCCcCCccccccCCccccc--ccccccCCCC------ceE
Confidence 3579999999999999999999 466666666 9999999999999888999999775 7788999995 999
Q ss_pred EcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 80 FAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 80 FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|||++++..+.|||+||++||++||.+|+.
T Consensus 416 ~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~ 445 (450)
T COG1231 416 FAGTEHASEFGGWLEGAIRSGQRAAAEIHA 445 (450)
T ss_pred EeeecccccccchhHHHHHHHHHHHHHHHH
Confidence 999777777999999999999999999874
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.78 E-value=5.1e-19 Score=129.85 Aligned_cols=99 Identities=33% Similarity=0.507 Sum_probs=87.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
..++++++++.++++|+++++ ....++|..+.+++|.+++|..|+|+++.++.... ..+.++.|+. ++||||
T Consensus 352 ~~~~~e~~~~~~~~~L~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~l~~a 423 (450)
T PF01593_consen 352 DDLSDEEILERVLDDLRKILP-GASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQ--FRPALRTPID-----PGLYFA 423 (450)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT-TGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHH--HHHHHHSCBT-----TTEEE-
T ss_pred cccchhhhHHHHHHHhhhccc-ccccccccccccccccccccccccccccccccccc--ccccccCCcc-----eEEEEe
Confidence 568999999999999999998 23678899999999999999999999999987632 6788999994 389999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHH
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
|++|+..+.|+|+||+.||++||++||
T Consensus 424 G~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 424 GDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 999999888999999999999999996
No 12
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.64 E-value=4.5e-16 Score=118.02 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCC--CCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEE
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYT--IPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLF 80 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~--~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~F 80 (110)
.++++++++.++++|+++|| .. ...+..+..++|.++||+. |. ..||... ..+.+.+|++ +|||
T Consensus 360 ~~~~ee~~~~v~~~L~~~~~--~~~~~~~~~~~~~~~~~~~p~a~--~~-~~pg~~~---~~~~~~~p~~------~l~~ 425 (453)
T TIGR02731 360 GRSDEEIIDATMAELAKLFP--NHIKADSPAKILKYKVVKTPRSV--YK-TTPGRQQ---YRPHQKTPIP------NFFL 425 (453)
T ss_pred cCCHHHHHHHHHHHHHHhCC--cccCCCCCceEEEEEEEECCCce--ec-cCCCChh---hCccccCccC------CEEE
Confidence 57999999999999999998 23 2367788889999999994 53 5677532 4567899985 8999
Q ss_pred cccccccccccchhHHHHHHHHHHHHH
Q psy7655 81 AGEATSEDQYATVNGAIETGWREADRI 107 (110)
Q Consensus 81 AGe~ts~~~~g~~~GA~~SG~raA~~i 107 (110)
||++|+..|+|+||||++||.+||++|
T Consensus 426 AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 426 AGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred eehhccCcccccHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987
No 13
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.46 E-value=2.3e-13 Score=101.21 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=69.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
..++++++++.++++|+++|| ......|+...+.+|.... |++ .|+... ..+.+..|++ +|+||
T Consensus 328 ~~~~~e~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~-~~g~~~---~~~~~~~~~~------~l~~a 391 (419)
T TIGR03467 328 VDLPREELADRIVAELRRAFP-RVAGAKPLWARVIKEKRAT-----FAA-TPGLNR---LRPGARTPWP------NLFLA 391 (419)
T ss_pred ccCCHHHHHHHHHHHHHHhcC-ccccCCccceEEEEccCCc-----ccc-CCcccc---cCCCCCCCcC------CEEEe
Confidence 457999999999999999998 3223456666667776533 332 344321 2344667774 89999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|++|+..++++||||+.||.++|++|++
T Consensus 392 Gd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 392 GDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 9999998899999999999999999974
No 14
>PLN02612 phytoene desaturase
Probab=99.42 E-value=3.1e-13 Score=105.75 Aligned_cols=94 Identities=21% Similarity=0.246 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCC-Ccc--ceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcE
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTI-PEP--ARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVL 78 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~-~~~--~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl 78 (110)
..++++++++.++++|.++|| ..+ +.+ ..+....|...|++. |.+ .|+... ..+.++.|+. +|
T Consensus 450 ~~~sdeei~e~vl~~L~~lfp--~~~~~~~~~~~i~~~~~v~~P~a~--~~~-~pg~~~---~rp~~~tPi~------~l 515 (567)
T PLN02612 450 ISRSDEDIIDATMKELAKLFP--DEISADQSKAKILKYHVVKTPRSV--YKT-VPNCEP---CRPLQRSPIE------GF 515 (567)
T ss_pred hcCCHHHHHHHHHHHHHHHCC--cccccccCCceEEEEEEeccCCce--EEe-CCCCcc---cCccccCccC------CE
Confidence 457999999999999999999 332 222 233344455666653 443 444432 3455778885 79
Q ss_pred EEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 79 LFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 79 ~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
||||++|+..|+++|+||+.||+++|++|++
T Consensus 516 ~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~ 546 (567)
T PLN02612 516 YLAGDYTKQKYLASMEGAVLSGKLCAQSIVQ 546 (567)
T ss_pred EEeecceeCCchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999874
No 15
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.14 E-value=9.9e-11 Score=89.99 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcc
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAG 82 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAG 82 (110)
.++++++++.++++|+++|| ......++...+.+.. +..|. +.||... ..+....|+. +||+||
T Consensus 385 ~~~~~~l~~~~~~~L~~~~p-~~~~~~~~~~~v~~~~-----~a~~~-~~pg~~~---~~P~~~t~~~------~l~lAG 448 (474)
T TIGR02732 385 PESNEEIAKRVDKQVRALFP-SSKNLKLTWSSVVKLA-----QSLYR-EAPGMDP---FRPDQKTPIS------NFFLAG 448 (474)
T ss_pred CCCHHHHHHHHHHHHHHhCc-cccCCceeEEEEEEec-----Cceec-cCCCCcc---cCCCCCCCCC------CeEEec
Confidence 48999999999999999998 2223345554444433 33332 3566643 2345566664 799999
Q ss_pred cccccccccchhHHHHHHHHHHHHHH
Q psy7655 83 EATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 83 e~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.|+..|+.+||||+.||.+||+.|+
T Consensus 449 D~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 449 SYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred cccccCchHHHhHHHHHHHHHHHHhC
Confidence 99999999999999999999999875
No 16
>PLN02487 zeta-carotene desaturase
Probab=99.10 E-value=3.3e-10 Score=88.97 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcc
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAG 82 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAG 82 (110)
.++++++++.++.+|+++||. .....++...+.. +-+..|. ..||+.. .++..+.|+. +||+||
T Consensus 461 ~~~~~ei~~~~~~~L~~~~p~-~~~~~v~~~~vv~-----~~~at~~-~~pg~~~---~RP~~~T~~~------nl~LAG 524 (569)
T PLN02487 461 PLSNDKIVEKVHKQVLELFPS-SRGLEVTWSSVVK-----IGQSLYR-EAPGMDP---FRPDQKTPIS------NFFLAG 524 (569)
T ss_pred CCCHHHHHHHHHHHHHHhCcc-cccCceEEEEEEE-----ccCceec-cCCCccc---cCCCCCCCCC------CEEEeC
Confidence 589999999999999999982 2222455555554 4444443 4666543 2456778885 799999
Q ss_pred cccccccccchhHHHHHHHHHHHHHHc
Q psy7655 83 EATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 83 e~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.|+..|+.+||||+.||.+||+.|++
T Consensus 525 D~t~~~yPat~EgAv~SG~~AA~~i~~ 551 (569)
T PLN02487 525 SYTKQDYIDSMEGATLSGRQAAAYICE 551 (569)
T ss_pred cccccCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998874
No 17
>PRK07233 hypothetical protein; Provisional
Probab=99.08 E-value=2.5e-10 Score=85.47 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcc
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAG 82 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAG 82 (110)
.++++++++.+++.|.++|| +..... +....|.+.+|+.+.| .||... ..+.+.+|+. +|||||
T Consensus 339 ~~~~~~~~~~~~~~L~~~~p-~~~~~~---~~~~~~~r~~~a~~~~---~~g~~~---~~~~~~~~~~------~l~~aG 402 (434)
T PRK07233 339 QMSDEELLDRFLSYLRKMFP-DFDRDD---VRAVRISRAPYAQPIY---EPGYLD---KIPPYDTPIE------GLYLAG 402 (434)
T ss_pred cCCHHHHHHHHHHHHHHhCC-CCChhh---eeeEEEEEeccccccc---cCchhh---cCCCcccCcC------CEEEeC
Confidence 47899999999999999998 222223 3444566667775543 455322 2344667764 899999
Q ss_pred cccccccccchhHHHHHHHHHHHHHHc
Q psy7655 83 EATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 83 e~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.+...+.++|+||+.||.+||++|+.
T Consensus 403 ~~~~~~~~~~~~~Ai~sG~~aA~~i~~ 429 (434)
T PRK07233 403 MSQIYPEDRSINGSVRAGRRVAREILE 429 (434)
T ss_pred CcccCCccCchhHHHHHHHHHHHHHhh
Confidence 954454567999999999999999975
No 18
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.99 E-value=2e-09 Score=81.14 Aligned_cols=90 Identities=22% Similarity=0.286 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
..++++++++.++++|+++|| .. ..|....+++|.. +|..+.|+... ....+..++.. .++|+||
T Consensus 361 ~~~~~~~~~~~~~~~L~~~~g--~~-~~~~~~~~~rw~~------a~p~~~~~~~~---~~~~l~~~l~~---~~~l~~a 425 (451)
T PRK11883 361 VDATDEELVAFVLADLSKVMG--IT-GDPEFTIVQRWKE------AMPQYGVGHIE---RVAELRAGLPH---YPGLYVA 425 (451)
T ss_pred ccCCHHHHHHHHHHHHHHHhC--CC-CCceEEEEeecCc------cCCCCCccHHH---HHHHHHHhhhh---CCCEEEE
Confidence 357899999999999999998 23 4677899999985 46566666532 23445555431 1379999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|+.+. .+.|++|+.||.++|++|++
T Consensus 426 G~~~~---g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 426 GASFE---GVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CcccC---CccHHHHHHHHHHHHHHHHh
Confidence 99985 35699999999999999975
No 19
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.89 E-value=7.1e-09 Score=79.02 Aligned_cols=89 Identities=16% Similarity=0.247 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCC-CCCCCcccCCCCCCccccc-ccHHHhcCccCCCCCCCcEE
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGS-NKHFRGSYSIRTLTTERLN-TSAAELGAPVSNGMGKPVLL 79 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~-dp~~~G~ys~~~~g~~~~~-~~~~~l~~p~~~~~~~~rl~ 79 (110)
+.++|+++++.++++|+++|| . ...|+.+.+++|.+ -|. ..++....- .-...+..+. ++|+
T Consensus 369 ~~~~dee~~~~~~~~L~~~lG--~-~~~p~~~~v~~W~~a~P~-------y~~~~~~~~~~~~~~l~~~~------~~l~ 432 (463)
T PRK12416 369 KNYSEEELVRVALYDIEKSLG--I-KGEPEVVEVTNWKDLMPK-------YHLEHNQAVQSLQEKMMNLY------PNIY 432 (463)
T ss_pred hcCCHHHHHHHHHHHHHHHhC--C-CCCceEEEEEEccccCCC-------cCcCHHHHHHHHHHHHHhhC------CCeE
Confidence 467999999999999999998 2 34789999999985 333 223321110 0112344444 4899
Q ss_pred EcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 80 FAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 80 FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|||+.+.. ..|+||+.||.++|++|++
T Consensus 433 ~aG~~~~g---~~i~~ai~sg~~aA~~i~~ 459 (463)
T PRK12416 433 LAGASYYG---VGIGACIGNGKNTANEIIA 459 (463)
T ss_pred Eecccccc---ccHHHHHHHHHHHHHHHHH
Confidence 99999876 3599999999999999974
No 20
>PLN02576 protoporphyrinogen oxidase
Probab=98.87 E-value=9e-09 Score=79.00 Aligned_cols=94 Identities=18% Similarity=0.286 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
..++++++++.+++.|++++| ....+.|....+++|.. ++..+.+|... ..+.+.+.+.. ...++|+||
T Consensus 392 ~~~s~ee~~~~~~~~L~~~~g-~~~~~~p~~~~~~~w~~------a~P~~~~g~~~---~~~~~~~~l~~-~~~~~l~~a 460 (496)
T PLN02576 392 ASASEEELVEAVDRDLRKLLL-KPGAPPPKVVGVRVWPK------AIPQYLLGHLD---VLEAAEKMEKD-LGLPGLFLG 460 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHhC-CCCCCCCcEEEEeEcCc------ccCCCCcCHHH---HHHHHHHHHHh-cCCCCEEEe
Confidence 457999999999999999998 33445777778889973 34444555432 12333333311 000389999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|++++. ..|+||+.||.++|++|+.
T Consensus 461 G~~~~g---~~i~~ai~sg~~aA~~i~~ 485 (496)
T PLN02576 461 GNYRGG---VALGKCVESGYEAADLVIS 485 (496)
T ss_pred ccccCC---ccHHHHHHHHHHHHHHHHH
Confidence 999984 5899999999999999874
No 21
>PRK07208 hypothetical protein; Provisional
Probab=98.43 E-value=6.5e-07 Score=68.50 Aligned_cols=90 Identities=14% Similarity=0.150 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHH---hcCccCCCCCCCcEE
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAE---LGAPVSNGMGKPVLL 79 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~---l~~p~~~~~~~~rl~ 79 (110)
.++|+++++.+++.|.+++. .....|+...+.+| + .+|..+.++.... ... +.+++ ++|+
T Consensus 368 ~~~deel~~~~~~~L~~l~~--~~~~~~~~~~v~r~---~---~a~P~y~~~~~~~---~~~~~~~~~~~------~~l~ 430 (479)
T PRK07208 368 NMSDEDLIALAIQELARLGL--IRPADVEDGFVVRV---P---KAYPVYDGTYERN---VEIIRDLLDHF------PNLH 430 (479)
T ss_pred cCCHHHHHHHHHHHHHHcCC--CChhheeEEEEEEe---c---CcccCCCchHHHH---HHHHHHHHHhc------CCce
Confidence 57999999999999999843 22445666666665 2 3344344443321 222 33455 3799
Q ss_pred EcccccccccccchhHHHHHHHHHHHHHHcC
Q psy7655 80 FAGEATSEDQYATVNGAIETGWREADRILKG 110 (110)
Q Consensus 80 FAGe~ts~~~~g~~~GA~~SG~raA~~i~~~ 110 (110)
|||++.... +.+|++|+.||.++|++|+.+
T Consensus 431 laGr~~~~~-~~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 431 LVGRNGMHR-YNNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred eeccccccc-cCChhHHHHHHHHHHHHHhcC
Confidence 999887653 479999999999999999763
No 22
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.37 E-value=2.7e-06 Score=64.66 Aligned_cols=87 Identities=17% Similarity=0.332 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHH----hcCccCCCCCCCc
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAE----LGAPVSNGMGKPV 77 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~----l~~p~~~~~~~~r 77 (110)
..++++++++.+++.|+++|+ ... .|....+++|.. +|..+.+|... .... +..+. ++
T Consensus 368 ~~~~~ee~~~~v~~~L~~~~g--i~~-~p~~~~v~rw~~------a~P~~~~g~~~---~~~~i~~~l~~~~------~~ 429 (462)
T TIGR00562 368 VDLSENEIINIVLRDLKKVLN--INN-EPEMLCVTRWHR------AIPQYHVGHDQ---RLKEARELLESAY------PG 429 (462)
T ss_pred cCCCHHHHHHHHHHHHHHHhC--CCC-CCcEEEEeEccc------cCCCCCCChHH---HHHHHHHHHHhhC------CC
Confidence 357999999999999999998 333 488899999973 45555666432 2232 32333 37
Q ss_pred EEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 78 LLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 78 l~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|++||..+.. ..|++++.||.++|++|++
T Consensus 430 l~l~G~~~~g---~~i~~~i~sg~~~a~~~~~ 458 (462)
T TIGR00562 430 VFLTGNSFEG---VGIPDCIDQGKAAASDVLT 458 (462)
T ss_pred EEEeccccCC---CcHHHHHHHHHHHHHHHHH
Confidence 9999998763 4899999999999999875
No 23
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=4.5e-05 Score=59.09 Aligned_cols=90 Identities=19% Similarity=0.123 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcc
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAG 82 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAG 82 (110)
.-+++++....++++..++| ...... -|.+.--..-+....+||... .++....|+. ++++||
T Consensus 372 ~~~~~~~~a~~e~~~~~~vP--~~~~a~------~~~~~i~~~q~~~~~~pgs~~---~rP~~~Tpv~------N~~laG 434 (485)
T COG3349 372 FESDEAIVATFEKELYELVP--SLAEAK------LKSSVLVNQQSLYGLAPGSYH---YRPEQKTPIP------NLLLAG 434 (485)
T ss_pred ccchhhHHHHHHHHhhhcCC--chhccc------ccccceeccccccccCCCccc---cCCCCCCCcc------chhhcc
Confidence 34788899999999998887 333222 222222222233345777654 4667788885 799999
Q ss_pred cccccccccchhHHHHHHHHHHHHHHc
Q psy7655 83 EATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 83 e~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.+-..+.++||||..||+++|+.|++
T Consensus 435 d~~~~~~~~smE~A~~sGl~AA~~v~~ 461 (485)
T COG3349 435 DYTKQPYLGSMEGATLSGLLAANAILD 461 (485)
T ss_pred ceeecCCcCccchhhhhHHHHHHHHHH
Confidence 999999999999999999999998873
No 24
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.60 E-value=0.00014 Score=53.01 Aligned_cols=85 Identities=22% Similarity=0.245 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcc
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAG 82 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAG 82 (110)
.+++|+.+.........+++ +..++|.-...+.|. |+ -|...-. .....+.+- .+|+++|
T Consensus 246 ~~~~e~~i~~l~aA~~~~~~--~~~~~p~~s~~H~Wr---YA-------~P~~~~~--~~~L~ad~~------~~l~~cG 305 (331)
T COG3380 246 DHPAEQVIVALRAAAQELDG--DRLPEPDWSDAHRWR---YA-------IPNDAVA--GPPLDADRE------LPLYACG 305 (331)
T ss_pred cCCHHHHHHHHHHhhhhccC--CCCCcchHHHhhccc---cc-------ccccccc--CCccccCCC------Cceeeec
Confidence 35778888777777777787 577888888888883 32 2221110 111122222 3799999
Q ss_pred cccccccccchhHHHHHHHHHHHHHHcC
Q psy7655 83 EATSEDQYATVNGAIETGWREADRILKG 110 (110)
Q Consensus 83 e~ts~~~~g~~~GA~~SG~raA~~i~~~ 110 (110)
+.++. |-+|||++||..+|++|+++
T Consensus 306 Dwc~G---grVEgA~LSGlAaA~~i~~~ 330 (331)
T COG3380 306 DWCAG---GRVEGAVLSGLAAADHILNG 330 (331)
T ss_pred ccccC---cchhHHHhccHHHHHHHHhc
Confidence 99987 89999999999999999864
No 25
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=96.32 E-value=0.013 Score=45.39 Aligned_cols=94 Identities=11% Similarity=0.008 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcc--ceeec-cccCCC-CCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 6 DKQVQIEVMKAFRFFLGAKYTIPEP--ARILT-TSWGSN-KHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 6 ~e~~~~~~~~~L~~~fg~~~~~~~~--~~~~~-~~W~~d-p~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
.+++.+.++++|.+++| + -.... ..+.. .+|.+- -...|+|....-.........+..+.|+. +|||+
T Consensus 393 k~~~~~~il~~l~~~~p-~-l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~------gLyl~ 464 (493)
T TIGR02730 393 KEADAERIIDRLEKIFP-G-LDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIP------GLYCV 464 (493)
T ss_pred HHHHHHHHHHHHHHHCC-C-hhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCC------CeEEe
Confidence 35588889999999997 2 11111 11111 122211 12245553211100000000012345664 79999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|..|.+ .+-+.|++.||..+|+.|+.
T Consensus 465 G~~~~p--G~Gv~g~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 465 GDSCFP--GQGLNAVAFSGFACAHRVAA 490 (493)
T ss_pred cCcCCC--CCCHHHHHHHHHHHHHHHHh
Confidence 998865 24789999999999999875
No 26
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.49 E-value=0.079 Score=41.10 Aligned_cols=91 Identities=14% Similarity=0.238 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
..|+|||+++.++..|.++++ -...|+...+++|. .++..+.+|-.. ....++..+.+ .-++|..+
T Consensus 354 ~~~~dee~~~~~l~~L~~~~~---~~~~~~~~~v~r~~------~~~PqY~vG~~~---~~~~ir~~l~~--~y~gi~~~ 419 (444)
T COG1232 354 STMSDEELVAAVLDDLKKLGG---INGDPVFVEVTRWK------YAMPQYEVGHLD---RLEPIRAALKG--AYPGIKSV 419 (444)
T ss_pred hccCHHHHHHHHHHHHHHHcC---cCcchhheeeeecc------ccCCccchhHHH---HHHHHHHhhcc--ccCCeEEe
Confidence 457899999999999999998 33355567777763 234444555432 33445555531 00468887
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|-...- =.+.+.+.+|..+|++|++
T Consensus 420 G~~~~g---~g~~d~I~~g~~aa~~l~~ 444 (444)
T COG1232 420 GRYGEG---VGLPDCIAAGKEAAEQLLS 444 (444)
T ss_pred ccCCCC---CCchHHHHHHHHHHHHhhC
Confidence 765542 2688899999999999863
No 27
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=95.36 E-value=0.052 Score=41.99 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=27.1
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
++|||+|..|.+. +-+-|++.||..+|+.|++
T Consensus 459 ~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~ 490 (502)
T TIGR02734 459 DNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLG 490 (502)
T ss_pred CCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHh
Confidence 4799999998652 4789999999999999875
No 28
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=94.93 E-value=0.13 Score=39.65 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=27.3
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
++|||+|..|.+. +-+-|++.||..+|+.|++
T Consensus 459 ~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 459 KGLWLCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCeEEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 4799999999662 4688999999999999975
No 29
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=87.44 E-value=0.65 Score=35.32 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=27.6
Q ss_pred CcEEEccccccccc-c-c-chhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQ-Y-A-TVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~-~-g-~~~GA~~SG~raA~~i~ 108 (110)
+.||||||-...+. . | -++-||.||..|++.+.
T Consensus 337 pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~ 372 (376)
T TIGR03862 337 PGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVH 372 (376)
T ss_pred CCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHH
Confidence 57999999998763 2 3 68999999999998765
No 30
>KOG1276|consensus
Probab=83.85 E-value=5.2 Score=31.34 Aligned_cols=90 Identities=17% Similarity=0.265 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcc
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAG 82 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAG 82 (110)
..|.||+++.+.+.|+++++. ..+|...-++=|.+ |...+.+|... -.+.+.+-+.+..+ .+|+.+|
T Consensus 401 ~~S~ee~~~~v~~alq~~Lgi---~~~P~~~~v~l~~~------ciPqy~vGh~~---~le~a~~~l~~~~g-~~l~l~G 467 (491)
T KOG1276|consen 401 VPSPEELVNAVTSALQKMLGI---SNKPVSVNVHLWKN------CIPQYTVGHDD---VLEAAKSMLTDSPG-LGLFLGG 467 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCC---CCCcccccceehhh------cccceecchHH---HHHHHHHHHHhCCC-CceEeec
Confidence 458999999999999999982 22366665554532 22333444321 11222222211111 2799999
Q ss_pred cccccccccchhHHHHHHHHHHHHHH
Q psy7655 83 EATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 83 e~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
-+...- .+---++||.++|.+++
T Consensus 468 ~~y~Gv---~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 468 NHYGGV---SVGDCIESGRKTAVEVI 490 (491)
T ss_pred cccCCC---ChhHHHHhhHHHHHhhc
Confidence 888763 34455677777777765
No 31
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=79.02 E-value=2.3 Score=32.62 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=24.0
Q ss_pred CcEEEccccccccc--cc-chhHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQ--YA-TVNGAIETGWREAD 105 (110)
Q Consensus 76 ~rl~FAGe~ts~~~--~g-~~~GA~~SG~raA~ 105 (110)
+.|||+||-...+. -| -++-||.||..|++
T Consensus 376 ~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 376 PGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp TTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 47999999999763 24 49999999999985
No 32
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=69.53 E-value=6.4 Score=27.72 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.+.. .+..+.-|+..|..||..|..
T Consensus 264 ~~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 264 SVPGVFAAGDVRDK-GYRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred CCCCEEEeecccCc-chhhhhhhhhhHHHHHHHHHh
Confidence 34689999998874 346677899999999998764
No 33
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=68.06 E-value=7.1 Score=30.46 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=18.1
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREAD 105 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~ 105 (110)
++|||||+-+-.+ ||.+ |+.+|..|+.
T Consensus 331 ~~l~~AGqi~g~~--Gy~e-a~a~G~~Ag~ 357 (436)
T PRK05335 331 PNLFFAGQITGVE--GYVE-SAASGLLAGI 357 (436)
T ss_pred CCEEeeeeecCch--HHHH-HHHHHHHHHH
Confidence 5899999999763 6663 4445555543
No 34
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=67.72 E-value=44 Score=27.21 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=27.0
Q ss_pred CccCCCCCCCcEEEccccccccccc-------chhHHHHHHHHHHHHHH
Q psy7655 67 APVSNGMGKPVLLFAGEATSEDQYA-------TVNGAIETGWREADRIL 108 (110)
Q Consensus 67 ~p~~~~~~~~rl~FAGe~ts~~~~g-------~~~GA~~SG~raA~~i~ 108 (110)
.+++ .||=|||.++...+| ++-.++..|.+|++.+.
T Consensus 421 t~Ip------GLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa 463 (635)
T PLN00128 421 AVVP------GLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVA 463 (635)
T ss_pred CccC------ceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 5675 799999987543334 67778889999988764
No 35
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=67.41 E-value=3.7 Score=31.13 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=23.6
Q ss_pred CcEEEccccccccc-c-c-chhHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQ-Y-A-TVNGAIETGWREA 104 (110)
Q Consensus 76 ~rl~FAGe~ts~~~-~-g-~~~GA~~SG~raA 104 (110)
+.||||||-+..+. . | -++-|+.||..|+
T Consensus 368 ~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 368 PGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 47999999998763 2 3 5899999998876
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=64.96 E-value=6.7 Score=30.30 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=26.0
Q ss_pred CcEEEcccccccc-ccc--chhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSED-QYA--TVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~-~~g--~~~GA~~SG~raA~~i~~ 109 (110)
|.||||||-...+ |.| -++-|+.||.-|++-+.+
T Consensus 369 PGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~ 405 (408)
T COG2081 369 PGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAA 405 (408)
T ss_pred CCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhh
Confidence 4799999999865 222 467899999999877653
No 37
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=61.60 E-value=13 Score=28.74 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=26.7
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.+.||-+|+.+.. +..+..|+..|..||..|.
T Consensus 429 s~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~ 461 (471)
T PRK12810 429 SNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAID 461 (471)
T ss_pred CCCCEEEccccCCC--chhHHHHHHHHHHHHHHHH
Confidence 34689999998863 3468899999999998875
No 38
>PRK12831 putative oxidoreductase; Provisional
Probab=61.09 E-value=13 Score=28.88 Aligned_cols=32 Identities=31% Similarity=0.267 Sum_probs=26.9
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.+.||-+|+.+.. +..+.-|+..|.+||..|.
T Consensus 426 ~pgVfAaGD~~~g--~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 426 KEGVFAGGDAVTG--AATVILAMGAGKKAAKAID 457 (464)
T ss_pred CCCEEEeCCCCCC--chHHHHHHHHHHHHHHHHH
Confidence 4689999998753 4678999999999999885
No 39
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=60.49 E-value=12 Score=28.52 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=27.6
Q ss_pred CcEEEcccccccccc-----cchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQY-----ATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~-----g~~~GA~~SG~raA~~i~~ 109 (110)
++++++|++...-.+ .=|.-|+.||..||+.|++
T Consensus 295 ~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~ 333 (428)
T PRK10157 295 DGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLS 333 (428)
T ss_pred CCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHH
Confidence 589999999876543 4577799999999998864
No 40
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=57.17 E-value=16 Score=27.20 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=27.9
Q ss_pred CCCcEEEcccccccc--cccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSED--QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~--~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+... ..+++..|+..|..+|..|+.
T Consensus 264 s~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 264 SAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLG 301 (377)
T ss_pred CCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcC
Confidence 346899999988753 235788899999999988753
No 41
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=56.12 E-value=18 Score=28.84 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=24.3
Q ss_pred CcEEEccccccccccc-------chhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYA-------TVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g-------~~~GA~~SG~raA~~i~ 108 (110)
+.||-|||.+....+| ++-+|+.+|.+|++.+.
T Consensus 354 pGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa 393 (565)
T TIGR01816 354 PGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAA 393 (565)
T ss_pred CCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 3799999987543333 56778888999888764
No 42
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=55.23 E-value=19 Score=29.18 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=27.6
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.++||-+|+.+. .+..+.-|+..|++||..|..
T Consensus 616 s~~gVfAaGD~~~--g~~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 616 SNPKIFAGGDAVR--GADLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred CCCCEEEcCCcCC--CCcHHHHHHHHHHHHHHHHHH
Confidence 3468999999875 356789999999999998863
No 43
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=54.63 E-value=30 Score=24.96 Aligned_cols=50 Identities=20% Similarity=0.447 Sum_probs=31.3
Q ss_pred ccceeeccccCCCCCCCcccCCCCC-CcccccccHHHhcCccCCCCCCCcEEEcccc
Q psy7655 29 EPARILTTSWGSNKHFRGSYSIRTL-TTERLNTSAAELGAPVSNGMGKPVLLFAGEA 84 (110)
Q Consensus 29 ~~~~~~~~~W~~dp~~~G~ys~~~~-g~~~~~~~~~~l~~p~~~~~~~~rl~FAGe~ 84 (110)
.|--+..-+|+.||-.--+|-...- |-..- ........|.+ +||||--..
T Consensus 171 ~pgivAElC~SDDP~YtTGYVA~~~~gY~RI-~~mK~~G~~~G-----GRvffv~~~ 221 (242)
T PRK01322 171 HPGVIAELCWSDDPDYTTGYVATKKLGYHRI-TNLKEEGTPYG-----GRIFFVDDS 221 (242)
T ss_pred CCCeEEEEEecCCCCCeeEEEEeCCCCeEeC-ccccccCCCCC-----CEEEEEeCc
Confidence 4445778899999988777854333 33221 12334556777 599997543
No 44
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=54.49 E-value=30 Score=24.75 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=29.9
Q ss_pred ccceeeccccCCCCCCCcccCCCCC-CcccccccHHHhcCccCCCCCCCcEEEccc
Q psy7655 29 EPARILTTSWGSNKHFRGSYSIRTL-TTERLNTSAAELGAPVSNGMGKPVLLFAGE 83 (110)
Q Consensus 29 ~~~~~~~~~W~~dp~~~G~ys~~~~-g~~~~~~~~~~l~~p~~~~~~~~rl~FAGe 83 (110)
.|--+..-+|+.||-.--+|-...- |-..- ........|.+ +||||--.
T Consensus 164 ~pgvvAElC~SDDP~YtTGYVA~~~~gY~RI-~~lK~~G~~~G-----GRvffv~~ 213 (232)
T TIGR01204 164 CPAVVAELCWSDDPDYVTGYVSGKEIGYVRI-TPLKEKGDELG-----GRVFFVSR 213 (232)
T ss_pred CCCeEEEEEecCCCCCeeEEEEeCCCCeEeC-ccccccCCCCC-----CEEEEEeC
Confidence 4444678899999988777854332 33221 12223444776 59999754
No 45
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=53.01 E-value=21 Score=27.45 Aligned_cols=33 Identities=30% Similarity=0.285 Sum_probs=27.2
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
.+.||-+|+.+. .+..+.-|+..|.+||..|..
T Consensus 415 ~~~VfA~GD~~~--g~~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 415 IPGVFAGGDIIL--GAATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred CCCEEEecCCCC--CcHHHHHHHHHHHHHHHHHHh
Confidence 468999999875 346788999999999998864
No 46
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=53.00 E-value=19 Score=28.06 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=22.3
Q ss_pred CcEEEcccccccccccchhHH---HHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGA---IETGWREADRI 107 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA---~~SG~raA~~i 107 (110)
++|||||--+-.+ ||+|.| +.+|+.+|..+
T Consensus 330 ~~lf~AGQi~G~~--GY~Eaaa~Gl~agina~~~~ 362 (433)
T TIGR00137 330 QTLFFAGQLTGVE--GYVASTAGGWLAGINAARLA 362 (433)
T ss_pred CCEEECcccccch--HHHHHHHHHHHHHHHHHHHH
Confidence 5899999988764 888876 45666666654
No 47
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=52.93 E-value=22 Score=28.60 Aligned_cols=37 Identities=24% Similarity=0.168 Sum_probs=27.1
Q ss_pred cCccCCCCCCCcEEEccccccccccc-------chhHHHHHHHHHHHHHH
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSEDQYA-------TVNGAIETGWREADRIL 108 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~~~g-------~~~GA~~SG~raA~~i~ 108 (110)
.++++ .||-|||.++...+| ++-+|+..|.+|++.+.
T Consensus 382 ~t~I~------GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 425 (598)
T PRK09078 382 DAVVP------GLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAA 425 (598)
T ss_pred CCccC------ceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHH
Confidence 35775 799999987643333 67778889999987764
No 48
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=52.25 E-value=21 Score=28.31 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=27.2
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.++||-+|+.+. .+.++.-|+..|.++|..|.
T Consensus 408 s~~~Vfa~GD~~~--g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 408 GRPGVFAGGDMVP--GPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred CCCCEEeccCcCC--CchHHHHHHHHHHHHHHHHH
Confidence 3468999999875 35789999999999999874
No 49
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=50.82 E-value=23 Score=28.69 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=27.3
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.+.||-+|+.+.. +..+.-|+..|++||..|..
T Consensus 599 s~~gVfA~GD~~~g--~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 599 HLKKVFAGGDAVHG--ADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred CCCCEEEcCCCCCC--chHHHHHHHHHHHHHHHHHH
Confidence 34689999998753 56788999999999998863
No 50
>PRK10015 oxidoreductase; Provisional
Probab=50.20 E-value=24 Score=27.03 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=27.4
Q ss_pred CcEEEccccccccc-----ccchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQ-----YATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~-----~g~~~GA~~SG~raA~~i~~ 109 (110)
+++.++|++...-. ..-|.-|+.||..||+.|++
T Consensus 295 ~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~ 333 (429)
T PRK10015 295 DGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIA 333 (429)
T ss_pred CCeEEEecccccccccCccccchhHHHHHHHHHHHHHHH
Confidence 58999999988743 24577799999999998864
No 51
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=48.82 E-value=14 Score=26.60 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=25.3
Q ss_pred CcEEEccccccccc----cc-chhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQ----YA-TVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~----~g-~~~GA~~SG~raA~~i~~ 109 (110)
|.||+||=+++.-+ .| +--|-++||+++|+.|++
T Consensus 219 pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 219 PGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred CCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHH
Confidence 68999998877543 23 334567899999999875
No 52
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.96 E-value=29 Score=27.76 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=23.7
Q ss_pred CcEEEccccccccccc-------chhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYA-------TVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g-------~~~GA~~SG~raA~~i~ 108 (110)
+.||-|||.++....| ++-+|+-.|.+|++.+.
T Consensus 376 pGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 415 (583)
T PRK08205 376 PGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAA 415 (583)
T ss_pred CCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHH
Confidence 4799999987643333 56668888888887653
No 53
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=47.06 E-value=34 Score=18.58 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCc
Q psy7655 8 QVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRG 46 (110)
Q Consensus 8 ~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G 46 (110)
++.+.+.+.+.+.|+ ..++-+.+.+.+=..+-|..|
T Consensus 19 ~L~~~it~a~~~~~~---~p~~~v~V~i~ev~~~~~~~~ 54 (60)
T PRK02289 19 ALAREVTEVVSRIAK---APKEAIHVFINDMPEGTYYPQ 54 (60)
T ss_pred HHHHHHHHHHHHHhC---cCcceEEEEEEEeChhheEEC
Confidence 455666788889997 234556666666555555543
No 54
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=46.43 E-value=30 Score=26.61 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=25.9
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.+.||-+|+.+. .+..+.-|+..|..+|..|.
T Consensus 417 ~~~VfA~GD~~~--~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 417 LPGVFAGGDIVT--GAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred CCCEEEeCCcCC--CchHHHHHHHHHHHHHHHHH
Confidence 468999999874 24577889999999998875
No 55
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=46.36 E-value=31 Score=26.05 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=27.6
Q ss_pred CcEEEcccccccccc---cchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQY---ATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~---g~~~GA~~SG~raA~~i~~ 109 (110)
+++++.|++...-.+ +-|.-|+.||..||+.|.+
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~ 306 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVE 306 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHH
Confidence 689999998876544 6778899999999988763
No 56
>PF03744 BioW: 6-carboxyhexanoate--CoA ligase; InterPro: IPR005499 This family contains the enzyme 6-carboxyhexanoate--CoA ligase 6.2.1.14 from EC. This enzyme is involved in the first step of biotin synthesis, where it converts pimelate into pimeloyl-CoA []. The enzyme requires magnesium as a cofactor and forms a homodimer [].; GO: 0009102 biotin biosynthetic process
Probab=46.10 E-value=41 Score=24.18 Aligned_cols=52 Identities=19% Similarity=0.434 Sum_probs=31.9
Q ss_pred ccceeeccccCCCCCCCcccCCCC-CCcccccccHHHhcCccCCCCCCCcEEEcccccc
Q psy7655 29 EPARILTTSWGSNKHFRGSYSIRT-LTTERLNTSAAELGAPVSNGMGKPVLLFAGEATS 86 (110)
Q Consensus 29 ~~~~~~~~~W~~dp~~~G~ys~~~-~g~~~~~~~~~~l~~p~~~~~~~~rl~FAGe~ts 86 (110)
.|--+..-+|+.||-.--+|-... .|-..- ........|.+ +||||-=...+
T Consensus 171 ~PgiiaELC~SDDP~YtTGYVA~~~~GY~RI-~~mK~~G~~~G-----GRvffv~~~~d 223 (239)
T PF03744_consen 171 APGIIAELCWSDDPDYTTGYVASKKFGYHRI-TNMKEAGSPKG-----GRVFFVDGSID 223 (239)
T ss_pred CCcceEEEEecCCCCCceEEEEeCCcceEEC-ccccccCCCCC-----CEEEEEeCCCC
Confidence 344467789999998877774322 233221 12344566777 69999865543
No 57
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=45.52 E-value=30 Score=27.97 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=24.0
Q ss_pred CcEEEccccccccccc-------chhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYA-------TVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g-------~~~GA~~SG~raA~~i~ 108 (110)
+.||-|||.++...+| ++-+++..|.+|++.+.
T Consensus 403 ~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa 442 (617)
T PTZ00139 403 PGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVM 442 (617)
T ss_pred CCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHH
Confidence 3799999987533233 67778888898887764
No 58
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=45.50 E-value=46 Score=17.47 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCc
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRG 46 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G 46 (110)
.++.+.+.+.|.+.+| . .++-+.+.+..=..+.|..|
T Consensus 17 ~~l~~~i~~~l~~~~g--~-~~~~v~V~i~e~~~~~~~~g 53 (58)
T cd00491 17 RELIERVTEAVSEILG--A-PEATIVVIIDEMPKENWGIG 53 (58)
T ss_pred HHHHHHHHHHHHHHhC--c-CcccEEEEEEEeCchhceEC
Confidence 3455566777778887 2 23444455555445555443
No 59
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.96 E-value=31 Score=27.57 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=24.8
Q ss_pred CcEEEccccccccccc-------chhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYA-------TVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g-------~~~GA~~SG~raA~~i~ 108 (110)
+.||=|||.++...+| ++-+++-.|.+|++.+.
T Consensus 361 pGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 400 (566)
T PRK06452 361 VGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVV 400 (566)
T ss_pred CCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 3799999987643334 67788888888887754
No 60
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=44.90 E-value=33 Score=29.76 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=28.1
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.++||-+|+... .+.++.-|+..|.+||..|+.
T Consensus 804 s~pgVFAaGD~a~--GP~tVv~AIaqGr~AA~nIl~ 837 (1012)
T TIGR03315 804 NITNVFVIGDANR--GPATIVEAIADGRKAANAILS 837 (1012)
T ss_pred CCCCEEEEeCcCC--CccHHHHHHHHHHHHHHHHhc
Confidence 3468999999764 367899999999999999873
No 61
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=43.51 E-value=35 Score=27.91 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=22.3
Q ss_pred CcEEEcccccccccccchhHH---HHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGA---IETGWREADRI 107 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA---~~SG~raA~~i 107 (110)
+.|||||--+-+ .||.|.| +.+|+.||..+
T Consensus 360 ~~lf~AGQinGt--~GYeEaaaqGl~AgiNaa~~~ 392 (618)
T PRK05192 360 KGLFFAGQINGT--TGYEEAAAQGLIAGINAALKV 392 (618)
T ss_pred CCeEECcccCCC--hHHHHHHHHHHHHHHHHHHHh
Confidence 479999987766 4888877 55777777654
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=43.24 E-value=38 Score=27.61 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=26.7
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.++||-+|+.+. .+..+.-|+..|..||..|.
T Consensus 465 s~pgVfA~GDv~~--g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 465 SVAGVFAGGDCVT--GADIAINAVEQGKRAAHAID 497 (652)
T ss_pred CCCCEEEcCCcCC--CchHHHHHHHHHHHHHHHHH
Confidence 3468999999875 34678899999999998875
No 63
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.66 E-value=38 Score=27.05 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=25.2
Q ss_pred cCccCCCCCCCcEEEcccccccccc-------cchhHHHHHHHHHHHHHH
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSEDQY-------ATVNGAIETGWREADRIL 108 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~~~-------g~~~GA~~SG~raA~~i~ 108 (110)
.+|+. .||-|||.+....+ .++-+|+.+|.+|++.+.
T Consensus 368 g~~I~------GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa 411 (577)
T PRK06069 368 GEWVR------GLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAA 411 (577)
T ss_pred CCEeC------CeEeccccccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 35675 79999998763222 245667888888877654
No 64
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=42.38 E-value=34 Score=26.73 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=26.0
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.+.||-+|+-+.. ...+.-|+..|..||..|.
T Consensus 443 s~~gVfAaGD~~~g--~~~~~~Av~~G~~AA~~i~ 475 (485)
T TIGR01317 443 SIPGVFAAGDCRRG--QSLIVWAINEGRKAAAAVD 475 (485)
T ss_pred CCCCEEEeeccCCC--cHHHHHHHHHHHHHHHHHH
Confidence 34689999997643 4567779999999999875
No 65
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=42.17 E-value=35 Score=26.30 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=18.7
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADR 106 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~ 106 (110)
++|||||.-+-. -||.|.|. +|.-|+..
T Consensus 356 ~~lf~AGqi~G~--~Gy~eaaa-~G~~ag~n 383 (392)
T PF01134_consen 356 PGLFFAGQINGT--EGYEEAAA-QGLIAGIN 383 (392)
T ss_dssp BTEEE-GGGGTB---SHHHHHH-HHHHHHHH
T ss_pred CCceECCCCcch--hHHHHHHH-HHHHHHHH
Confidence 479999999877 58888765 55555433
No 66
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=42.03 E-value=36 Score=28.10 Aligned_cols=34 Identities=29% Similarity=0.225 Sum_probs=27.6
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.+.||-+|+-+.. +.++.-|+..|.+||..|.+
T Consensus 714 s~~gVfA~GD~~~g--~~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 714 SIPGIYAGGDIVRG--GATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred CCCCEEEeCCccCC--cHHHHHHHHHHHHHHHHHHH
Confidence 44689999998753 46789999999999998853
No 67
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=41.89 E-value=42 Score=26.04 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=26.7
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.+.||-+|+.+.. +..+.-|+..|..||..|..
T Consensus 430 ~~~gVfa~GD~~~~--~~~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 430 TNPKIFAGGDAVRG--ADLVVTAVAEGRQAAQGILD 463 (467)
T ss_pred CCCCEEEECCcCCC--ccHHHHHHHHHHHHHHHHHH
Confidence 34679999998753 34678899999999998763
No 68
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=41.84 E-value=23 Score=18.97 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy7655 1 MESLTDKQVQIEVMKAFRFF 20 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~ 20 (110)
|++||++||.+.-...+.++
T Consensus 12 L~~MS~eEI~~er~eL~~~L 31 (49)
T PF08621_consen 12 LASMSPEEIEEEREELLESL 31 (49)
T ss_pred HHhCCHHHHHHHHHHHHHhC
Confidence 46799999988766665554
No 69
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=41.17 E-value=25 Score=25.15 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=24.8
Q ss_pred CcEEEccccccccc----cc-chhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQ----YA-TVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~----~g-~~~GA~~SG~raA~~i~~ 109 (110)
|.||.+|=+.+.-+ .| +--|-+.||+++|+.|++
T Consensus 213 ~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 213 PNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred CCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 67999997776533 23 334567799999999975
No 70
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=41.02 E-value=41 Score=29.04 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=27.1
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.+.||-+|+.+. .+.++.-|+..|++||..|.
T Consensus 719 s~pgVFAaGDv~~--G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 719 NLPGVFAGGDIVT--GGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred CCCCEEEecCcCC--CccHHHHHHHHHHHHHHHHH
Confidence 3468999999875 35688999999999999875
No 71
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=41.00 E-value=24 Score=25.22 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=24.7
Q ss_pred CcEEEccccccccc----cc-chhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQ----YA-TVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~----~g-~~~GA~~SG~raA~~i~~ 109 (110)
|.||.+|=+.+..+ .| +--|-+.||+++|+.|++
T Consensus 214 ~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 214 PGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred CCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHH
Confidence 67999997766543 23 334567899999999875
No 72
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=40.62 E-value=4.4 Score=21.98 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=9.9
Q ss_pred CcEEEccccccccc
Q psy7655 76 PVLLFAGEATSEDQ 89 (110)
Q Consensus 76 ~rl~FAGe~ts~~~ 89 (110)
+||-+.||||..+.
T Consensus 20 GRvnliGeHtDy~g 33 (52)
T PF10509_consen 20 GRVNLIGEHTDYNG 33 (52)
T ss_dssp EEEEEE-TT-GGGT
T ss_pred ceEEecCcccccCC
Confidence 49999999998753
No 73
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=40.31 E-value=35 Score=29.26 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=27.4
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.++||-+|+.+.. ..++.-|+..|++||..|.
T Consensus 591 s~pgVFAaGD~~~G--~~~vv~Ai~eGr~AA~~I~ 623 (944)
T PRK12779 591 SIKGVYSGGDAARG--GSTAIRAAGDGQAAAKEIV 623 (944)
T ss_pred CCCCEEEEEcCCCC--hHHHHHHHHHHHHHHHHHH
Confidence 44689999998753 4578999999999999885
No 74
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=40.30 E-value=26 Score=26.93 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=23.9
Q ss_pred CCCcEEEcccccccccccchhH---HHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNG---AIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~G---A~~SG~raA~~i~ 108 (110)
.+++|||||--|-.+ ||++. .+..|..||..++
T Consensus 333 ~~p~l~fAGQitG~E--GYveSaA~Gllag~naa~~~~ 368 (439)
T COG1206 333 KRPNLFFAGQITGVE--GYVESAASGLLAGINAARLAL 368 (439)
T ss_pred cCCCcEEeeeeecch--hhhHHhhhhHHHhhHHHHHhc
Confidence 557899999999875 66654 4667777776653
No 75
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=39.81 E-value=46 Score=25.07 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=27.9
Q ss_pred CcEEEccccccccc---ccchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQ---YATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~---~g~~~GA~~SG~raA~~i~~ 109 (110)
+++.+.|++..... -+-|+-|+.||..||+.|++
T Consensus 269 ~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~ 305 (396)
T COG0644 269 DGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAE 305 (396)
T ss_pred CCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHH
Confidence 58999999987443 46788899999999998865
No 76
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=39.25 E-value=21 Score=18.75 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=11.0
Q ss_pred CCCCCHHHHHHHHHH
Q psy7655 1 MESLTDKQVQIEVMK 15 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~ 15 (110)
+..|||+|+.+.+++
T Consensus 3 ~~~LSd~eL~~~L~~ 17 (44)
T smart00540 3 VDRLSDAELRAELKQ 17 (44)
T ss_pred hhHcCHHHHHHHHHH
Confidence 356889888887754
No 77
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=39.15 E-value=50 Score=17.75 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcc
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGS 47 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ 47 (110)
+++.+.+.+.|.+.+| ..++-+.+.+..=..+.|+.|+
T Consensus 18 ~~l~~~it~~l~~~lg---~~~~~v~V~i~e~~~~~w~~gG 55 (63)
T TIGR00013 18 RQLIEGVTEAMAETLG---ANLESIVVIIDEMPKNNYGIGG 55 (63)
T ss_pred HHHHHHHHHHHHHHhC---CCcccEEEEEEEcCHHHeeECC
Confidence 3456667777888887 2234445555555555555444
No 78
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=38.84 E-value=51 Score=24.61 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=26.9
Q ss_pred CcEEEcccccccccc---cchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQY---ATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~---g~~~GA~~SG~raA~~i~~ 109 (110)
++++++|++...-.+ +-|.=|+.||..+|+.|.+
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~ 300 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAE 300 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHH
Confidence 579999998876544 5677799999999888753
No 79
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=38.30 E-value=36 Score=20.99 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCC
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSN 41 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~d 41 (110)
++.++.+++.+.+...-....| ..|...-+...+|.++
T Consensus 57 ~S~l~~~eV~~la~~lae~alg---k~p~V~V~t~~e~~~~ 94 (96)
T PF11080_consen 57 ISALSAEEVAQLARGLAESALG---KTPEVEVTTWEEWLKD 94 (96)
T ss_pred EecCCHHHHHHHHHHHhhhhcC---CCCceEEEEHHHHHhh
Confidence 4578899999888877777777 3445555666666554
No 80
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=36.77 E-value=34 Score=26.47 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=40.1
Q ss_pred ccccCCCCCCCcccCCCCCCcccccccHHHhcCccCC--CCCCCcEEEccccccccc---ccchhH-HHHHHHHHHHHHH
Q psy7655 35 TTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSN--GMGKPVLLFAGEATSEDQ---YATVNG-AIETGWREADRIL 108 (110)
Q Consensus 35 ~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~--~~~~~rl~FAGe~ts~~~---~g~~~G-A~~SG~raA~~i~ 108 (110)
+.+|.+..|.. .-.+..-|.... . . -+|+.. ...-.+||.+|.-+.-.. -|+=.| |+.||..||++|+
T Consensus 344 r~~w~~~~~~~-~~p~~~~GV~~d--~--~-~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~ 417 (422)
T PRK05329 344 RADWYQRDFFA-PHPFLQFGVATD--A--T-LRPLDSQGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIA 417 (422)
T ss_pred hhhhhhhhhcc-CCchhhcCceEC--C--C-cCcccCCCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHH
Confidence 46798888883 334445555432 1 1 233211 011248999999887532 123333 8889999999886
Q ss_pred c
Q psy7655 109 K 109 (110)
Q Consensus 109 ~ 109 (110)
+
T Consensus 418 ~ 418 (422)
T PRK05329 418 E 418 (422)
T ss_pred H
Confidence 4
No 81
>PRK06116 glutathione reductase; Validated
Probab=36.74 E-value=64 Score=24.65 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=27.5
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.++||-+|+-+.. +...+-|+..|..+|+.|+.
T Consensus 294 s~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 294 NVPGIYAVGDVTGR--VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCCCEEEEeecCCC--cCcHHHHHHHHHHHHHHHhC
Confidence 34789999998743 46788999999999998863
No 82
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=36.43 E-value=52 Score=28.64 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=28.1
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.++||-+|+.+. .+.++.-|+..|..||..|+.
T Consensus 806 s~pgVFAaGD~a~--Gp~tvv~Ai~qGr~AA~nI~~ 839 (1019)
T PRK09853 806 SLTNVYMIGDVQR--GPSTIVAAIADARRAADAILS 839 (1019)
T ss_pred CCCCEEEEecccc--CchHHHHHHHHHHHHHHHHhh
Confidence 3468999999764 457899999999999999864
No 83
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=36.39 E-value=61 Score=23.91 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=26.1
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||-+|+.+.. +..+.-|+..|..+|..|.
T Consensus 315 ~~~vyaiGD~~~~--~~~~~~A~~~g~~aa~~i~ 346 (352)
T PRK12770 315 REGVFAAGDVVTG--PSKIGKAIKSGLRAAQSIH 346 (352)
T ss_pred CCCEEEEcccccC--cchHHHHHHHHHHHHHHHH
Confidence 4689999998752 4678899999999998875
No 84
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=36.06 E-value=52 Score=17.64 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCc
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRG 46 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G 46 (110)
+++.+.+.+.|.+.|+ ..++-+.+.+..=..+.|..|
T Consensus 18 ~~l~~~it~~l~~~~~---~p~~~v~V~i~e~~~~~w~~g 54 (62)
T PRK00745 18 RKLVEEITRVTVETLG---CPPESVDIIITDVKRENWATG 54 (62)
T ss_pred HHHHHHHHHHHHHHcC---CChhHEEEEEEEcChHHeeEC
Confidence 4556667778888887 233444455544444444433
No 85
>smart00539 NIDO Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins.
Probab=35.35 E-value=87 Score=20.69 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCccc
Q psy7655 5 TDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSY 48 (110)
Q Consensus 5 s~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~y 48 (110)
++..++..+...+++.|+ +...-+|...++.-|.+-.+..+..
T Consensus 20 ~d~~~L~ra~~~v~~~f~-~~~~F~a~~v~vvTW~~V~~~~~~~ 62 (152)
T smart00539 20 TDHAILDRATESVREGFT-DMGGFRAKSVVIVTWENVAAYGSQS 62 (152)
T ss_pred CCHHHHHHHHHHHHHHCC-CCcCcceeEEEEEECcCcccccccC
Confidence 678899999999999998 3234478889999999999876554
No 86
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=35.13 E-value=70 Score=24.51 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=27.7
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.+.||.+|+-+.. +...+-|...|..+|+.|+.
T Consensus 292 s~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 292 SIPSIYAVGDVTDR--INLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CCCCEEEeeccCCC--ccchhHHHHHHHHHHHHHhc
Confidence 34689999999863 46788999999999988763
No 87
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=35.04 E-value=59 Score=25.97 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=23.6
Q ss_pred CcEEEcccccccccc-------cchhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQY-------ATVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~-------g~~~GA~~SG~raA~~i~ 108 (110)
+.||-|||.++...+ .++-.|+..|.+|++.+.
T Consensus 371 ~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 410 (575)
T PRK05945 371 EGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIA 410 (575)
T ss_pred CCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 379999998763222 256778888998887764
No 88
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=34.50 E-value=62 Score=17.26 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcc
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGS 47 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ 47 (110)
.++.+.+.+.+.+.+| ..++-+.+.+..=..+.|..|+
T Consensus 17 ~~l~~~it~~~~~~lg---~~~~~i~V~i~E~~~~~w~~gG 54 (60)
T PF01361_consen 17 RELAEAITDAVVEVLG---IPPERISVVIEEVPPENWGIGG 54 (60)
T ss_dssp HHHHHHHHHHHHHHHT---S-GGGEEEEEEEE-CCCEEETT
T ss_pred HHHHHHHHHHHHHHhC---cCCCeEEEEEEEEChhheEECC
Confidence 4566777788888888 2445555555554555555443
No 89
>PRK11187 replication initiation regulator SeqA; Provisional
Probab=34.26 E-value=21 Score=24.63 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=9.1
Q ss_pred CCCcEEEcccc
Q psy7655 74 GKPVLLFAGEA 84 (110)
Q Consensus 74 ~~~rl~FAGe~ 84 (110)
|+.|+|||++.
T Consensus 116 GR~RvYFA~~e 126 (182)
T PRK11187 116 GRTRVYFARDE 126 (182)
T ss_pred CCcceeecCCH
Confidence 66899999865
No 90
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=34.25 E-value=78 Score=18.14 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCC
Q psy7655 6 DKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSI 50 (110)
Q Consensus 6 ~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~ 50 (110)
..++++.+.+.+.+.+| ..+.-+.+.+..=..+-|..|+.+.
T Consensus 18 K~~la~~vT~~~~~~lg---~~~~~i~Viieev~~~~w~~gG~~~ 59 (69)
T COG1942 18 KAELAAEVTEVTVETLG---KDPSAIHVIIEEVPPENWGVGGESV 59 (69)
T ss_pred HHHHHHHHHHHHHHHhC---CCcccEEEEEEecChhheeEccEEh
Confidence 34788888999999998 3456667777766666676666653
No 91
>PRK13984 putative oxidoreductase; Provisional
Probab=33.74 E-value=61 Score=25.96 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=24.8
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..+.||-+|+-+... . +--|+..|..||..|.
T Consensus 567 s~~gVfAaGD~~~~~--~-~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 567 SIPWLFAGGDIVHGP--D-IIHGVADGYWAAEGID 598 (604)
T ss_pred CCCCEEEecCcCCch--H-HHHHHHHHHHHHHHHH
Confidence 346899999988642 3 3458999999999885
No 92
>COG1424 BioW Pimeloyl-CoA synthetase [Coenzyme metabolism]
Probab=33.48 E-value=71 Score=22.54 Aligned_cols=68 Identities=13% Similarity=0.299 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCC-CCcccccccHHHhcCccCCCCCCCcEEEcccccc
Q psy7655 10 QIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRT-LTTERLNTSAAELGAPVSNGMGKPVLLFAGEATS 86 (110)
Q Consensus 10 ~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~-~g~~~~~~~~~~l~~p~~~~~~~~rl~FAGe~ts 86 (110)
-..+.+.|.-.+. ....|--...-+|+.||-.-.+|-.-. -|.+.- .+......|.+ +||||--....
T Consensus 151 ~~R~~dAlAiask---v~~hp~VvaELC~SDd~dY~TGYvagkkiGY~Ri-t~lKe~gt~~G-----gRVfFVd~~~d 219 (239)
T COG1424 151 TERTVDALAIASK---VNAHPGVVAELCWSDDPDYTTGYVAGKKIGYHRI-TDLKEVGTRYG-----GRVFFVDDCID 219 (239)
T ss_pred hHHHHHHHHHHHh---hccCcceeEEEeecCCCcceeeeeecceeeeEEe-ecccccCCccC-----cEEEEEcCccc
Confidence 3445556655553 223555567789999997766664322 343321 12334556676 59999866544
No 93
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=33.39 E-value=61 Score=25.15 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=27.1
Q ss_pred CcEEEccccccccc---ccchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQ---YATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~---~g~~~GA~~SG~raA~~i~~ 109 (110)
+|+++.|++...-. .+-|.-|+.||..+|+.|.+
T Consensus 309 ~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~ 345 (450)
T PLN00093 309 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVE 345 (450)
T ss_pred CCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHH
Confidence 58999999877543 45788899999999988763
No 94
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=33.17 E-value=79 Score=24.34 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=27.6
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.+.||-+|+-+.. +..++=|...|..+|+.|+.
T Consensus 294 ~~p~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 294 NVPGIYALGDVVGK--VELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CCCCEEEEEecCCC--cccHHHHHHHHHHHHHHHhc
Confidence 34689999998854 46788899999999998863
No 95
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=32.11 E-value=58 Score=17.79 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhC
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg 22 (110)
+.++.++++..++..|++.|-
T Consensus 8 ~~l~~~e~L~~l~~YLR~~~~ 28 (55)
T PF13821_consen 8 EELSPEERLDKLLSYLREEHN 28 (55)
T ss_pred hccCHHHHHHHHHHHHHhhCc
Confidence 467889999999999998874
No 96
>PRK09077 L-aspartate oxidase; Provisional
Probab=31.71 E-value=68 Score=25.39 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=25.4
Q ss_pred cCccCCCCCCCcEEEcccccccccc-------cchhHHHHHHHHHHHHHH
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSEDQY-------ATVNGAIETGWREADRIL 108 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~~~-------g~~~GA~~SG~raA~~i~ 108 (110)
..+++ .||-|||.++.... .++-.|+..|.+|++.+.
T Consensus 363 ~t~I~------GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa 406 (536)
T PRK09077 363 RTDLD------GLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDIL 406 (536)
T ss_pred ccccC------CEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHH
Confidence 35675 79999998743222 256667778888887764
No 97
>PRK10262 thioredoxin reductase; Provisional
Probab=31.61 E-value=33 Score=24.79 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=24.7
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.+.||-+|+-++. .+-.+-.|+-.|..||..|.
T Consensus 278 ~~~~VyA~GD~~~~-~~~~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 278 SIPGVFAAGDVMDH-IYRQAITSAGTGCMAALDAE 311 (321)
T ss_pred CCCCEEECeeccCC-CcceEEEEehhHHHHHHHHH
Confidence 44789999998864 23344458888888888764
No 98
>PRK13748 putative mercuric reductase; Provisional
Probab=31.56 E-value=73 Score=25.09 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=27.3
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||-+|+-+.. +..++-|...|..+|..|+
T Consensus 394 s~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 394 SVPHIYAAGDCTDQ--PQFVYVAAAAGTRAAINMT 426 (561)
T ss_pred CCCCEEEeeecCCC--ccchhHHHHHHHHHHHHHc
Confidence 34689999999864 5778889999999998875
No 99
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=31.50 E-value=81 Score=24.46 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCCcEEEccccccccc----ccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQ----YATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~----~g~~~GA~~SG~raA~~i~ 108 (110)
+.+.||-+|+-..... +++.+.|++.|.-+|+.|.
T Consensus 290 ~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~ 328 (405)
T COG1252 290 GHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIK 328 (405)
T ss_pred CCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHH
Confidence 3468999998876654 7999999999999998875
No 100
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.31 E-value=73 Score=25.65 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=22.7
Q ss_pred CcEEEccccccccccc-------chhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYA-------TVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g-------~~~GA~~SG~raA~~i~ 108 (110)
+.||=|||.+....+| ++-+|+..|.+|++.+.
T Consensus 381 pGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa 420 (588)
T PRK08958 381 PGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQ 420 (588)
T ss_pred CCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 3799999987633223 34667888888887653
No 101
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.92 E-value=69 Score=18.92 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHHHhC
Q psy7655 4 LTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 4 ls~e~~~~~~~~~L~~~fg 22 (110)
-+++||...+++.++++-|
T Consensus 15 aT~~EI~aAAlQyVRKvSG 33 (78)
T PF10041_consen 15 ATDEEIRAAALQYVRKVSG 33 (78)
T ss_pred CCHHHHHHHHHHHHHHHcc
Confidence 4799999999999999998
No 102
>PRK07512 L-aspartate oxidase; Provisional
Probab=30.62 E-value=77 Score=24.96 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=23.9
Q ss_pred cCccCCCCCCCcEEEccccccccccc-------chhHHHHHHHHHHHHHH
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSEDQYA-------TVNGAIETGWREADRIL 108 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~~~g-------~~~GA~~SG~raA~~i~ 108 (110)
..++. .||-|||.++...+| .+-.++..|.++++.+.
T Consensus 351 ~t~I~------GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa 394 (513)
T PRK07512 351 RSSLP------GLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIA 394 (513)
T ss_pred ccccC------CEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 36775 799999987532222 34445677888877653
No 103
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=30.50 E-value=2.6e+02 Score=21.77 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=23.7
Q ss_pred HHHhcCccCCCCCCCcEEEcccccccccccchhH--HHHHHHHH
Q psy7655 62 AAELGAPVSNGMGKPVLLFAGEATSEDQYATVNG--AIETGWRE 103 (110)
Q Consensus 62 ~~~l~~p~~~~~~~~rl~FAGe~ts~~~~g~~~G--A~~SG~ra 103 (110)
.+.+-+-+++ +-|+.+|.-+...-.|...| |+..+..+
T Consensus 349 ~p~~~~~~G~----Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea 388 (412)
T cd08213 349 VPDVIDILGK----DIVIQVGGGVHGHPDGTRAGAKAVRQAIEA 388 (412)
T ss_pred HHHHHHHhCC----ceEEecCCceecCCCCchhHHHHHHHHHHH
Confidence 3444444443 57999999998766677777 44444444
No 104
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=30.37 E-value=86 Score=25.02 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=26.8
Q ss_pred cCccCCCCCCCcEEEcccccccc----cc--c-chhHHHHHHHHHHHHHHc
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSED----QY--A-TVNGAIETGWREADRILK 109 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~----~~--g-~~~GA~~SG~raA~~i~~ 109 (110)
.+|+. .||-||+.+..- ++ | .+--|+.+|..|++.+.+
T Consensus 504 g~pIp------GLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~ 548 (557)
T PRK12844 504 GSVIP------GLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAG 548 (557)
T ss_pred CCCcc------ceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHh
Confidence 35775 799999987532 22 2 566788899998887753
No 105
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=30.20 E-value=81 Score=25.27 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=22.9
Q ss_pred CcEEEccccccccccc-------chhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYA-------TVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g-------~~~GA~~SG~raA~~i~ 108 (110)
+.||=|||.++...+| ++-+++..|.+|++.+.
T Consensus 363 pGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa 402 (570)
T PRK05675 363 PGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLE 402 (570)
T ss_pred CCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHH
Confidence 3799999987532222 44677888888887653
No 106
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.99 E-value=74 Score=25.60 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=23.9
Q ss_pred CcEEEcccccccccc-------cchhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQY-------ATVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~-------g~~~GA~~SG~raA~~i~ 108 (110)
+.||=|||.+....+ .++-.|+..|.+|++.+.
T Consensus 384 pGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa 423 (591)
T PRK07057 384 NGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIV 423 (591)
T ss_pred CCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 379999998753222 256778888999887764
No 107
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=29.97 E-value=72 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=25.4
Q ss_pred CccCCCCCCCcEEEcccccccccc-------cchhHHHHHHHHHHHHHH
Q psy7655 67 APVSNGMGKPVLLFAGEATSEDQY-------ATVNGAIETGWREADRIL 108 (110)
Q Consensus 67 ~p~~~~~~~~rl~FAGe~ts~~~~-------g~~~GA~~SG~raA~~i~ 108 (110)
++++ .||=|||.+....+ .++-+|+.+|.+|++.+.
T Consensus 357 t~I~------GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa 399 (566)
T TIGR01812 357 TIVK------GLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAA 399 (566)
T ss_pred cccC------CeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHH
Confidence 6775 79999998653222 246677888888887764
No 108
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=29.79 E-value=72 Score=16.99 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCC
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFR 45 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~ 45 (110)
.++.+.+.+.|.+.|+ ..++-+.+.+..=..+.|+.
T Consensus 18 ~~l~~~it~~l~~~~~---~p~~~v~V~i~e~~~~~~~~ 53 (61)
T PRK02220 18 KALVKDVTAAVSKNTG---APAEHIHVIINEMSKNHYAV 53 (61)
T ss_pred HHHHHHHHHHHHHHhC---cChhhEEEEEEEeChhHeEE
Confidence 3455566677788887 22333444444433444443
No 109
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=29.38 E-value=70 Score=22.20 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=24.3
Q ss_pred CcEEEccccccccc---ccchhHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQ---YATVNGAIETGWREADRI 107 (110)
Q Consensus 76 ~rl~FAGe~ts~~~---~g~~~GA~~SG~raA~~i 107 (110)
+|+++.|++.+... ..-|.-|+++|..+|+.|
T Consensus 261 ~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 261 GNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 68999999877654 346777888888888753
No 110
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=28.86 E-value=82 Score=25.11 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=27.1
Q ss_pred cCccCCCCCCCcEEEcccccccc----cc--c-chhHHHHHHHHHHHHHHc
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSED----QY--A-TVNGAIETGWREADRILK 109 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~----~~--g-~~~GA~~SG~raA~~i~~ 109 (110)
.+|++ +||=|||.+..- ++ | ++-.|+.+|+.|++.+.+
T Consensus 511 g~pIp------GLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 511 GSVIE------GLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCCcC------CceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 35775 799999997521 22 3 455789999999988754
No 111
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=28.75 E-value=87 Score=25.16 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=25.3
Q ss_pred cCccCCCCCCCcEEEcccccccccc-------cchhHHHHHHHHHHHHHH
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSEDQY-------ATVNGAIETGWREADRIL 108 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~~~-------g~~~GA~~SG~raA~~i~ 108 (110)
..+++ .||-|||.++...+ .++-+|+..|.+|++.+.
T Consensus 368 ~t~i~------GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa 411 (582)
T PRK09231 368 ETRIK------GLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAA 411 (582)
T ss_pred ccccC------CEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 46775 79999998653221 255667888888887654
No 112
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.59 E-value=73 Score=25.86 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=23.8
Q ss_pred CccCCCCCCCcEEEccccccccc------ccchhHHHHHHHHHHHHHH
Q psy7655 67 APVSNGMGKPVLLFAGEATSEDQ------YATVNGAIETGWREADRIL 108 (110)
Q Consensus 67 ~p~~~~~~~~rl~FAGe~ts~~~------~g~~~GA~~SG~raA~~i~ 108 (110)
.++. .||-|||.+..-+ ..++-+|+..|.+|++.+.
T Consensus 403 t~Ip------GLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa 444 (626)
T PRK07803 403 ATVP------GLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAA 444 (626)
T ss_pred eecC------CeeEccccccccCcCccccchhHHHHHHHHHHHHHHHH
Confidence 5675 7999999754211 1256667778888876653
No 113
>PRK14727 putative mercuric reductase; Provisional
Probab=28.54 E-value=91 Score=24.18 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=27.5
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.++||-+|+-+.. +..++-|+..|..+|..|+.
T Consensus 312 s~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 312 SAPDIYAAGDCSDL--PQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred CCCCEEEeeecCCc--chhhhHHHHHHHHHHHHHcC
Confidence 34689999998753 56788999999999998863
No 114
>PF01900 RNase_P_Rpp14: Rpp14/Pop5 family; InterPro: IPR002759 This family contains proteins found in some eukaryotes and archaebacteria that are related to yeast ribonuclease P. This enzyme is essential for tRNA processing generating 5'-termini of mature tRNA molecules []. tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40 [].; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 2CZV_D 2AV5_B.
Probab=28.37 E-value=52 Score=19.88 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhC
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg 22 (110)
..++++++.+.+.+.+.++||
T Consensus 16 ~~~~~~~l~~~I~~a~~~l~G 36 (107)
T PF01900_consen 16 AELSPSDLKKAIREAVKELFG 36 (107)
T ss_dssp S---HHHHHHHHHHHHHHHCH
T ss_pred CcCCHHHHHHHHHHHHHHHcC
Confidence 357899999999999999998
No 115
>PRK06370 mercuric reductase; Validated
Probab=28.31 E-value=1.1e+02 Score=23.56 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=27.4
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..+.||-+|+-+.. +...+-|...|..+|+.|+.
T Consensus 300 ~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 300 TNPGIYAAGDCNGR--GAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHhC
Confidence 34689999998754 45678999999999998864
No 116
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.09 E-value=98 Score=23.82 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=27.4
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..+.||.+|+-+.. +...+-|...|..+|..|+
T Consensus 302 s~p~IyAiGD~~~~--~~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 302 NVPHIYAIGDVTAK--LQLAHVAEAQGVVAAETIA 334 (466)
T ss_pred CCCCEEEEeecCCC--cccHhHHHHHHHHHHHHHc
Confidence 34689999999853 5678889999999999886
No 117
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=27.54 E-value=1.1e+02 Score=23.32 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=27.2
Q ss_pred CCCcEEEcccccccc---cccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSED---QYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~---~~g~~~GA~~SG~raA~~i~ 108 (110)
+.++||-+|+-++.. .+.+..-|+..|..+|..|.
T Consensus 307 ~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~ 344 (424)
T PTZ00318 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFN 344 (424)
T ss_pred CCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 346899999988743 34567789999999998875
No 118
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=27.08 E-value=1.1e+02 Score=23.84 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..+.||-+|+-+.. .+...+=|...|..+|+.|+.
T Consensus 309 s~p~IyA~GDv~~~-~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 309 NVPYIYAVGDILED-KQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CCCCEEEEEEecCC-CccchHHHHHHHHHHHHHHhc
Confidence 44689999998753 234567799999999998863
No 119
>PF03925 SeqA: SeqA protein; InterPro: IPR005621 The binding of SeqA protein to hemimethylated GATC sequences is important in the negative modulation of chromosomal initiation at oriC, and in the formation of SeqA foci necessary for Escherichia coli chromosome segregation []. SeqA tetramers are able to aggregate or multimerize in a reversible, concentration-dependent manner []. Apart from its function in the control of DNA replication, SeqA may also be a specific transcription factor []. The C-terminal domain binds DNA, binding to fully methylated and hemimethylated GATC sequences at oriC. The structure of the C-terminal domain consists of seven alpha-helices and three-stranded beta-sheet.; GO: 0003677 DNA binding, 0032297 negative regulation of DNA-dependent DNA replication initiation; PDB: 3FMT_A 1J3E_A 1XRX_D 1IU3_C 1LRR_D.
Probab=26.57 E-value=26 Score=24.30 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=7.8
Q ss_pred CCCcEEEccccc
Q psy7655 74 GKPVLLFAGEAT 85 (110)
Q Consensus 74 ~~~rl~FAGe~t 85 (110)
|+.|+|||++.-
T Consensus 124 GR~RvYFA~~e~ 135 (190)
T PF03925_consen 124 GRTRVYFARSEE 135 (190)
T ss_dssp -SSSB-EESSHH
T ss_pred CCCceeecCCHH
Confidence 667999998653
No 120
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=26.33 E-value=62 Score=25.33 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=32.9
Q ss_pred ccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcccccccc
Q psy7655 29 EPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAGEATSED 88 (110)
Q Consensus 29 ~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAGe~ts~~ 88 (110)
.|+-+..++=.=|.| |+|+.++|..... ....++.-++- ...+|++.|+|.-++
T Consensus 42 ~pvLiEAT~NQVnq~--GGYTGmtP~dF~~--~V~~iA~~~gf--~~~~iiLGGDHLGPn 95 (426)
T PRK15458 42 SPLLIEATSNQVDQF--GGYTGMTPADFRG--FVCQLADSLNF--PQEALILGGDHLGPN 95 (426)
T ss_pred CcEEEEecccccccc--CCcCCCCHHHHHH--HHHHHHHHcCC--ChhhEEeecCCCCCc
Confidence 444455554344444 9999888865432 33445444431 113899999999985
No 121
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=26.22 E-value=64 Score=25.35 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.++||.||+-+... +..+.-|+..|..||..+.
T Consensus 475 s~p~IyAaGDv~~~~-~k~~~~A~~eG~~Aa~~~~ 508 (517)
T PRK15317 475 SVPGVFAAGDCTTVP-YKQIIIAMGEGAKAALSAF 508 (517)
T ss_pred CCCCEEECccccCCC-CCEEEEhhhhHHHHHHHHH
Confidence 346899999998753 3446667777777776553
No 122
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=25.84 E-value=86 Score=23.85 Aligned_cols=19 Identities=16% Similarity=-0.057 Sum_probs=16.2
Q ss_pred ccchhHHHHHHHHHHHHHH
Q psy7655 90 YATVNGAIETGWREADRIL 108 (110)
Q Consensus 90 ~g~~~GA~~SG~raA~~i~ 108 (110)
.++||-+..+|+.+|.-|.
T Consensus 327 aStME~sai~akNvA~L~~ 345 (368)
T PF07156_consen 327 ASTMETSAIAAKNVALLIY 345 (368)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4899999999999987664
No 123
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=25.72 E-value=72 Score=17.33 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhC
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg 22 (110)
..||++|+.+.+.+.-..+|.
T Consensus 4 r~ls~~eL~~~l~~l~~elf~ 24 (57)
T cd00427 4 REKSDEELQEKLDELKKELFN 24 (57)
T ss_pred HHCCHHHHHHHHHHHHHHHHH
Confidence 468899999998888777773
No 124
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=25.56 E-value=87 Score=16.89 Aligned_cols=22 Identities=0% Similarity=0.069 Sum_probs=17.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg 22 (110)
|..||++|+.+.+.+.-..+|.
T Consensus 2 lr~~s~~EL~~~l~~lr~eLf~ 23 (55)
T TIGR00012 2 LREKSKEELAKKLDELKKELFE 23 (55)
T ss_pred HhhCCHHHHHHHHHHHHHHHHH
Confidence 3468999999998887777773
No 125
>COG3057 SeqA Negative regulator of replication initiationR [DNA replication, recombination, and repair]
Probab=25.42 E-value=36 Score=22.86 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=8.9
Q ss_pred CCCcEEEcccc
Q psy7655 74 GKPVLLFAGEA 84 (110)
Q Consensus 74 ~~~rl~FAGe~ 84 (110)
|+.|||||+++
T Consensus 115 GRtRVYFA~de 125 (181)
T COG3057 115 GRTRVYFAADE 125 (181)
T ss_pred CceeEEEecch
Confidence 66799999865
No 126
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=25.09 E-value=98 Score=24.90 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=23.1
Q ss_pred CcEEEcccccccccc-------cchhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQY-------ATVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~-------g~~~GA~~SG~raA~~i~ 108 (110)
+.||-|||.++...+ ..+-+++..|.+|++.+.
T Consensus 371 ~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa 410 (580)
T TIGR01176 371 KGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAA 410 (580)
T ss_pred CCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHH
Confidence 379999998653212 256667888888887764
No 127
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=25.05 E-value=97 Score=16.93 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy7655 2 ESLTDKQVQIEVMKAFRFFL 21 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~f 21 (110)
..||.|+..+..++.++.+.
T Consensus 20 ~~ls~Eqaq~~Lve~~rqmm 39 (53)
T PF04485_consen 20 QKLSREQAQELLVELYRQMM 39 (53)
T ss_dssp CTS-HHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHH
Confidence 57899999999988888776
No 128
>PRK07639 acyl carrier protein; Provisional
Probab=24.92 E-value=1.1e+02 Score=18.06 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHHHhC
Q psy7655 4 LTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 4 ls~e~~~~~~~~~L~~~fg 22 (110)
|+.+++.+.+++.|...++
T Consensus 1 M~~~ei~~~i~~il~e~l~ 19 (86)
T PRK07639 1 MRREALKNAVLKIMEEKLE 19 (86)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 6788999999999999997
No 129
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=24.64 E-value=1.1e+02 Score=23.32 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=26.4
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||-+|+-+. .+...+-|...|..+|..|+
T Consensus 302 ~~~IyAiGD~~~--~~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 302 VPHIYAVGDVIG--FPSLASASMDQGRIAAQHAV 333 (461)
T ss_pred CCCEEEeeecCC--CcccHhHHHHHHHHHHHHHc
Confidence 468999999874 34568889999999999886
No 130
>PRK11445 putative oxidoreductase; Provisional
Probab=24.56 E-value=1.4e+02 Score=21.98 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=26.7
Q ss_pred CcEEEccccccccc---ccchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQ---YATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~---~g~~~GA~~SG~raA~~i~~ 109 (110)
+|+++.|++...-. .+-+.-|+.+|..+|+.|.+
T Consensus 264 ~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~ 300 (351)
T PRK11445 264 DNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNK 300 (351)
T ss_pred CCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHh
Confidence 68999999887654 35677789999999988764
No 131
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=24.54 E-value=1.1e+02 Score=24.17 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=25.9
Q ss_pred cCccCCCCCCCcEEEcccccc-----cccc----c-chhHHHHHHHHHHHHHHc
Q psy7655 66 GAPVSNGMGKPVLLFAGEATS-----EDQY----A-TVNGAIETGWREADRILK 109 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts-----~~~~----g-~~~GA~~SG~raA~~i~~ 109 (110)
.+|++ .||-|||.+. ...+ | ++--|+.+|+.|++.+.+
T Consensus 501 g~pIp------GLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 501 GTPLP------GLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CCEeC------CeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 35775 7999999974 1111 1 355578889999988754
No 132
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=24.54 E-value=90 Score=24.84 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=24.9
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.+.||-+|+-+.. ....+.-|+..|..||..|.
T Consensus 273 ~p~IyAaGDv~~~-~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 273 VPGVYAAGDLRPK-ELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred CCCEEEceeccCC-CcchheeHHhhHHHHHHHHH
Confidence 4689999998753 23445679999999998764
No 133
>PRK14694 putative mercuric reductase; Provisional
Probab=24.39 E-value=1.2e+02 Score=23.34 Aligned_cols=33 Identities=24% Similarity=0.138 Sum_probs=27.2
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..+.||-+|+-+.. +..++-|...|..+|..|+
T Consensus 301 s~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 301 TVSGIYAAGDCTDQ--PQFVYVAAAGGSRAAINMT 333 (468)
T ss_pred CCCCEEEEeecCCC--cccHHHHHHHHHHHHHHhc
Confidence 34689999999864 5678889999999998875
No 134
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=24.30 E-value=45 Score=26.21 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=25.2
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.++||-+|+-+.. .+..+.-|+..|..||..|.
T Consensus 476 s~p~IyAaGDv~~~-~~~~~~~A~~~G~~Aa~~i~ 509 (515)
T TIGR03140 476 SVPGIFAAGDVTTV-PYKQIIIAMGEGAKAALSAF 509 (515)
T ss_pred CCCCEEEcccccCC-ccceEEEEEccHHHHHHHHH
Confidence 44789999999875 23445668888888887764
No 135
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=24.06 E-value=75 Score=24.84 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=38.8
Q ss_pred ccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcccccccc-ccc-chhHHHHHHHH
Q psy7655 29 EPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAGEATSED-QYA-TVNGAIETGWR 102 (110)
Q Consensus 29 ~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAGe~ts~~-~~g-~~~GA~~SG~r 102 (110)
.|+-+..++=.=|.+ |+|+.++|..... ....++.-++- ...+|++.|+|.-++ |.. ..+=|+..+++
T Consensus 39 ~pvLiEAT~NQVdq~--GGYTGmtP~dF~~--~V~~iA~~~gf--~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~ 108 (421)
T PRK15052 39 RKVLIEATSNQVNQF--GGYTGMTPADFRE--FVYGIADKVGF--PRERIILGGDHLGPNCWQQEPADAAMEKSVE 108 (421)
T ss_pred CcEEEEecccccccc--CCcCCCCHHHHHH--HHHHHHHHcCC--ChhcEEeecCCCCCccccCCCHHHHHHHHHH
Confidence 444455454344444 9999888865432 34445554431 113899999999985 322 24445554443
No 136
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=23.95 E-value=1.3e+02 Score=22.00 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=25.6
Q ss_pred CCCcEEEccccccccc---ccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQ---YATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~---~g~~~GA~~SG~raA~~i~ 108 (110)
+.++||.+|+.+.... +-..+-|...|..+|..|.
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 307 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLR 307 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHH
Confidence 4578999999986432 2245668999999988774
No 137
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=23.72 E-value=1.2e+02 Score=24.46 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=24.6
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.||=|||.++....+...+++..|..++..+.
T Consensus 396 ~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~ 428 (608)
T PRK06854 396 EGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAV 428 (608)
T ss_pred CCEEEeeecCCCCcchhHHHHHHHHHHHHHHHH
Confidence 379999998765445667788888888776653
No 138
>PRK12449 acyl carrier protein; Provisional
Probab=23.45 E-value=1.2e+02 Score=17.13 Aligned_cols=19 Identities=5% Similarity=0.087 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHHHhC
Q psy7655 4 LTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 4 ls~e~~~~~~~~~L~~~fg 22 (110)
|+.+++.+.+.+.|+..++
T Consensus 1 m~~~~i~~~l~~il~~~~~ 19 (80)
T PRK12449 1 MTREEIFERLINLIQKQRS 19 (80)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 5778999999999999997
No 139
>PRK08071 L-aspartate oxidase; Provisional
Probab=23.09 E-value=1.3e+02 Score=23.67 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=25.4
Q ss_pred cCccCCCCCCCcEEEcccccccccc-------cchhHHHHHHHHHHHHHH
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSEDQY-------ATVNGAIETGWREADRIL 108 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~~~-------g~~~GA~~SG~raA~~i~ 108 (110)
..+++ .||=|||.++...+ .++-.++..|.+|++.+.
T Consensus 342 ~t~I~------GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa 385 (510)
T PRK08071 342 ETSIP------GLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHIL 385 (510)
T ss_pred cccCC------CeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 35775 79999998753222 256667788888887763
No 140
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=22.82 E-value=1e+02 Score=17.22 Aligned_cols=21 Identities=5% Similarity=0.186 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhC
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg 22 (110)
..||++|+.+.+.+.-..+|.
T Consensus 7 r~ls~~eL~~~l~~lkkeL~~ 27 (66)
T PRK00306 7 RELSVEELNEKLLELKKELFN 27 (66)
T ss_pred hhCCHHHHHHHHHHHHHHHHH
Confidence 468999999999888777773
No 141
>PRK00089 era GTPase Era; Reviewed
Probab=22.75 E-value=98 Score=22.09 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCC
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHF 44 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~ 44 (110)
+++...+...|.++|+. .--....--...+|.+++-.
T Consensus 250 ~~i~~~ar~~l~~~~~~-~v~l~l~vkv~~~w~~~~~~ 286 (292)
T PRK00089 250 KKIGTEARKDIEKLLGK-KVFLELWVKVKKGWRDDEKA 286 (292)
T ss_pred HHHHHHHHHHHHHHhCC-CEEEEEEEEECCCccCCHHH
Confidence 46777889999999982 22223333456789988754
No 142
>COG1159 Era GTPase [General function prediction only]
Probab=22.54 E-value=58 Score=24.23 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccC
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYS 49 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys 49 (110)
.++-..++.+|.++|+. .--...---...+|.+++.....+.
T Consensus 253 K~IG~~AR~~ie~l~~~-kV~L~L~VKVk~~W~~~~~~l~~lg 294 (298)
T COG1159 253 KKIGTAARKDIEKLLGC-KVYLELWVKVKKNWRDDEEALRELG 294 (298)
T ss_pred HHHHHHHHHHHHHHhCC-ceEEEEEEEEccccccCHHHHHHcC
Confidence 45667889999999982 2222333334678999998765554
No 143
>PRK07117 acyl carrier protein; Validated
Probab=22.49 E-value=1.3e+02 Score=17.54 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHHHhC
Q psy7655 4 LTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 4 ls~e~~~~~~~~~L~~~fg 22 (110)
|+.+++.+.+.+.+...+|
T Consensus 1 M~~~ei~~~v~~ii~e~~p 19 (79)
T PRK07117 1 MDKQRIFDILVRHIREVLP 19 (79)
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 6788999999999999996
No 144
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=22.47 E-value=1.3e+02 Score=23.00 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=27.0
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||-+|+-+.. +...+-|+..|..+|..|..
T Consensus 297 s~~~IyA~GD~~~~--~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 297 SVPGIYAAGDVNGK--PPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred CCCCEEEEEecCCC--ccchhHHHHHHHHHHHHhcC
Confidence 34689999999864 34578899999999988763
No 145
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=22.15 E-value=1.3e+02 Score=25.85 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=24.7
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.+.||-||+.+.. +.+..|+.+|..||..|+
T Consensus 438 v~gVyaaGD~~g~---~~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 438 VQGCILAGAANGL---FGLAAALADGAAAGAAAA 468 (985)
T ss_pred CCCeEEeeccCCc---cCHHHHHHHHHHHHHHHH
Confidence 4689999987743 467779999999998875
No 146
>CHL00124 acpP acyl carrier protein; Validated
Probab=22.10 E-value=1.3e+02 Score=17.03 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHHHhC
Q psy7655 4 LTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 4 ls~e~~~~~~~~~L~~~fg 22 (110)
|+.+++.+.+.+.+...++
T Consensus 1 M~~~~i~~~l~~ii~~~~~ 19 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLG 19 (82)
T ss_pred CCHHHHHHHHHHHHHHHHC
Confidence 6788999999999999997
No 147
>PLN02661 Putative thiazole synthesis
Probab=22.00 E-value=64 Score=24.60 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=25.0
Q ss_pred CcEEEccccccccc----cc-chhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQ----YA-TVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~----~g-~~~GA~~SG~raA~~i~~ 109 (110)
|.||.+|=+.+.-+ .| +--|-+.||+++|+.|++
T Consensus 287 pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~ 325 (357)
T PLN02661 287 PGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALK 325 (357)
T ss_pred CCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHH
Confidence 67999997776533 23 344567899999999875
No 148
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=21.89 E-value=1.5e+02 Score=22.60 Aligned_cols=38 Identities=13% Similarity=0.005 Sum_probs=24.6
Q ss_pred cCccCCCCCCCcEEEccccccc--cccc-----chhHHHHHHHHHHHHHHc
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSE--DQYA-----TVNGAIETGWREADRILK 109 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~--~~~g-----~~~GA~~SG~raA~~i~~ 109 (110)
.+|++ .||=|||.+.. .... .+--|+..|+.|++.+.+
T Consensus 384 g~~I~------GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~ 428 (432)
T TIGR02485 384 AVAPD------NLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAAR 428 (432)
T ss_pred CCCCC------CeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHH
Confidence 35775 79999997642 1222 345567778888877643
No 149
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=21.83 E-value=1.1e+02 Score=19.37 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=14.4
Q ss_pred HHHHHHhCCCCCCCccceeeccccCCCCC
Q psy7655 15 KAFRFFLGAKYTIPEPARILTTSWGSNKH 43 (110)
Q Consensus 15 ~~L~~~fg~~~~~~~~~~~~~~~W~~dp~ 43 (110)
+.|+.-+. +...++.+-++++||....-
T Consensus 2 ~al~~aLk-~~~~p~~~v~liTDwQd~R~ 29 (113)
T PF11432_consen 2 QALKAALK-GLRFPEAKVYLITDWQDQRP 29 (113)
T ss_dssp HHHHHHHT-T---TT-EEEEEEE--SSCC
T ss_pred hhHHHHHh-cCCCCCceEEEEeccccchh
Confidence 34444444 35677888899999986653
No 150
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=21.83 E-value=93 Score=16.08 Aligned_cols=17 Identities=6% Similarity=0.071 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhC
Q psy7655 6 DKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 6 ~e~~~~~~~~~L~~~fg 22 (110)
=+|++..+.+.|..+|+
T Consensus 23 Ldel~r~l~~kl~~~fg 39 (42)
T PF12221_consen 23 LDELFRKLQDKLGGLFG 39 (42)
T ss_pred HHHHHHHHHHHHhcccC
Confidence 46888888888888886
No 151
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=21.77 E-value=1.4e+02 Score=24.00 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=26.3
Q ss_pred cCccCCCCCCCcEEEcccccccc----c--cc-chhHHHHHHHHHHHHHHc
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSED----Q--YA-TVNGAIETGWREADRILK 109 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~----~--~g-~~~GA~~SG~raA~~i~~ 109 (110)
.+|++ .||=||+.+... + .| ++-.|+.+|+.|++.+.+
T Consensus 525 g~pIp------GLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~ 569 (581)
T PRK06134 525 GQPIP------GLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAG 569 (581)
T ss_pred CCCcC------cceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhh
Confidence 35775 799999876321 2 13 556688899999988754
No 152
>cd07052 BMC_like_1_repeat2 Bacterial Micro-Compartment (BMC)-like domain 1 repeat 2. BMC-like domains exist in cyanobacteria, proteobacteria, and actinobacteria and are homologs of the carboxysome shell proteins. They might be encoded from putative organelles involved in unknown metabolic process. Although it has been suggested that these carboxysome shell protein homologs form hexamers and further assemble into the flat facets of the polyhedral bacterial organelles shell at present no experimental evidence exists to directly support this view. Proteins in this CD contain two tandem BMC domains. This CD includes repeat 2 (the second BMC domain of BMC like 1 proteins).
Probab=21.73 E-value=1.4e+02 Score=17.69 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=14.8
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.+++++.|+. .+++++.+++...+
T Consensus 54 gk~~~~ltGdv----------a~V~~A~~aa~~~l 78 (79)
T cd07052 54 AFGRLYLSGTE----------ADVRAARDAAIAAL 78 (79)
T ss_pred cEEEEEEeecH----------HHHHHHHHHHHHHh
Confidence 44678888774 44555555555543
No 153
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=21.69 E-value=1.3e+02 Score=16.25 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCC
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHF 44 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~ 44 (110)
+++.+.+.+.|.+.|+ ..++-+.+.+..=..+.|+
T Consensus 18 ~~l~~~it~~l~~~lg---~p~~~v~V~i~e~~~~~w~ 52 (64)
T PRK01964 18 KNLIREVTEAISATLD---VPKERVRVIVNEVPSSHWG 52 (64)
T ss_pred HHHHHHHHHHHHHHhC---cChhhEEEEEEEcChHHee
Confidence 3455666777888887 2233344444443333343
No 154
>PTZ00052 thioredoxin reductase; Provisional
Probab=21.68 E-value=1.7e+02 Score=23.01 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=27.3
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||-+|+-+.. .+...+-|...|..+|..|+.
T Consensus 306 s~p~IyAiGDv~~~-~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 306 NIPNIFAVGDVVEG-RPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred CCCCEEEEEEecCC-CcccHHHHHHHHHHHHHHHhC
Confidence 34689999997752 346788999999999988763
No 155
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.66 E-value=1.5e+02 Score=23.01 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=26.5
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.++||-+|+-+. .+...+-|...|..+|..|.
T Consensus 303 ~~p~VyAiGDv~~--~~~la~~A~~eG~~aa~~i~ 335 (471)
T PRK06467 303 NVPHIFAIGDIVG--QPMLAHKGVHEGHVAAEVIA 335 (471)
T ss_pred CCCCEEEehhhcC--CcccHHHHHHHHHHHHHHHc
Confidence 4468999999774 34578889999999998875
No 156
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=21.50 E-value=1.5e+02 Score=23.09 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=25.5
Q ss_pred cCccCCCCCCCcEEEcccccccccc-------cchhHHHHHHHHHHHHHH
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSEDQY-------ATVNGAIETGWREADRIL 108 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~~~-------g~~~GA~~SG~raA~~i~ 108 (110)
..+++ .||=|||.++...+ ..+-.|+..|++|++.+.
T Consensus 343 ~t~I~------GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa 386 (488)
T TIGR00551 343 RTTVP------GLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDIS 386 (488)
T ss_pred cccCC------CEEECccccccccCcccccchhHHHHHHHHHHHHHHHHH
Confidence 46775 79999998642221 245667888888887764
No 157
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=21.42 E-value=1.7e+02 Score=22.95 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=27.3
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||-+|+-+.. +..++=|...|..+|+.|+.
T Consensus 317 s~~~IyA~GDv~~~--~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 317 NVPNIYAIGDVTDR--VMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHhC
Confidence 34689999999864 45777799999999988863
No 158
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=21.16 E-value=1.2e+02 Score=23.10 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=24.7
Q ss_pred CCCcEEEcccccccc--------cccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSED--------QYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~--------~~g~~~GA~~SG~raA~~i~ 108 (110)
+.++||.+|+.+... .....+.|...|..+|+.|.
T Consensus 268 ~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~ 310 (438)
T PRK13512 268 NVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA 310 (438)
T ss_pred CCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc
Confidence 346899999998632 12346678888888887775
No 159
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=21.06 E-value=1.9e+02 Score=16.96 Aligned_cols=34 Identities=9% Similarity=-0.013 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcccee--eccccCCCCC
Q psy7655 8 QVQIEVMKAFRFFLGAKYTIPEPARI--LTTSWGSNKH 43 (110)
Q Consensus 8 ~~~~~~~~~L~~~fg~~~~~~~~~~~--~~~~W~~dp~ 43 (110)
...+.++++..+.|| +-...-... ..-.|.++||
T Consensus 40 ~~~~~l~~~Ye~~yG--PLt~~~~~~~~~~w~Wi~~PW 75 (78)
T PF12652_consen 40 KQRKQLKKEYEKRYG--PLTNFGVSPSRDPWQWIEEPW 75 (78)
T ss_pred HHHHHHHHHHHHHhC--CCcCCCcCCCCCCcccCCCCC
Confidence 345667777788887 322111111 3446777776
No 160
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=20.97 E-value=96 Score=13.45 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q psy7655 6 DKQVQIEVM 14 (110)
Q Consensus 6 ~e~~~~~~~ 14 (110)
+++++++|+
T Consensus 2 ~deiL~~CI 10 (20)
T PF05924_consen 2 EDEILQECI 10 (20)
T ss_dssp -HHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555554
No 161
>PLN02507 glutathione reductase
Probab=20.88 E-value=1.7e+02 Score=23.03 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=27.2
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.+.||-+|+-+.. ....+-|...|..+|..|+.
T Consensus 329 s~p~IyAiGDv~~~--~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 329 NIPSIWAIGDVTNR--INLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CCCCEEEeeEcCCC--CccHHHHHHHHHHHHHHHcC
Confidence 44689999999864 34678999999999998763
No 162
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.86 E-value=88 Score=15.62 Aligned_cols=12 Identities=8% Similarity=0.146 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhC
Q psy7655 11 IEVMKAFRFFLG 22 (110)
Q Consensus 11 ~~~~~~L~~~fg 22 (110)
...+.+|+.|||
T Consensus 3 ~~~v~~L~~mFP 14 (43)
T smart00546 3 DEALHDLKDMFP 14 (43)
T ss_pred HHHHHHHHHHCC
Confidence 457788999998
No 163
>PRK06175 L-aspartate oxidase; Provisional
Probab=20.79 E-value=1.2e+02 Score=23.24 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=25.4
Q ss_pred cCccCCCCCCCcEEEccccccccc-------ccchhHHHHHHHHHHHHHH
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSEDQ-------YATVNGAIETGWREADRIL 108 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~~-------~g~~~GA~~SG~raA~~i~ 108 (110)
.+|++ .||=|||.+.... ...+-.++-.|++|++.+.
T Consensus 341 ~t~i~------gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~ 384 (433)
T PRK06175 341 KTSMK------NLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKIN 384 (433)
T ss_pred cccCC------CeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHH
Confidence 37885 7999999875221 1245667888888887753
No 164
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=20.79 E-value=1.5e+02 Score=24.85 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=27.3
Q ss_pred CCCcEEEccccccccc--ccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQ--YATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~--~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-..... +|.+.-|+..|..+|..|+.
T Consensus 263 s~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g 300 (785)
T TIGR02374 263 SDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICG 300 (785)
T ss_pred CCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcC
Confidence 4478999999987532 45677788889888888763
No 165
>PRK07121 hypothetical protein; Validated
Probab=20.64 E-value=1.5e+02 Score=23.05 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=26.3
Q ss_pred cCccCCCCCCCcEEEccccccccc------ccchhHHHHHHHHHHHHHHc
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSEDQ------YATVNGAIETGWREADRILK 109 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~~------~g~~~GA~~SG~raA~~i~~ 109 (110)
.+|++ .||-|||.+..-+ -.++-.|+.+|+.|++.+.+
T Consensus 446 g~pI~------GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~ 489 (492)
T PRK07121 446 GAPIP------GLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAA 489 (492)
T ss_pred CCCcC------ceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHh
Confidence 45775 7999999864321 12455688899999887753
No 166
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=20.52 E-value=1.6e+02 Score=23.67 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=27.2
Q ss_pred cCccCCCCCCCcEEEcccccccc----cc--c-chhHHHHHHHHHHHHHHc
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSED----QY--A-TVNGAIETGWREADRILK 109 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~----~~--g-~~~GA~~SG~raA~~i~~ 109 (110)
.+|+. .||=||+.+..- ++ | ++--|+.+|..|++.+..
T Consensus 519 g~pI~------GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 519 GSVID------GLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCC------CeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 34775 799999987532 22 2 566688889999988754
No 167
>PF10921 DUF2710: Protein of unknown function (DUF2710); InterPro: IPR024296 This family of uncharacterised proteins appears to be restricted to Mycobacteriaceae.
Probab=20.40 E-value=1.2e+02 Score=18.72 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy7655 2 ESLTDKQVQIEVMKAFRFFL 21 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~f 21 (110)
++++|+++.+.++..|++.-
T Consensus 12 ~~lsDkdLvesVlr~lseaa 31 (109)
T PF10921_consen 12 SQLSDKDLVESVLRELSEAA 31 (109)
T ss_pred cccchhhHHHHHHHHHHHHH
Confidence 35899999999998887765
No 168
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=20.39 E-value=1.5e+02 Score=24.37 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=22.2
Q ss_pred CcEEEccccccccccc-------chhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYA-------TVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g-------~~~GA~~SG~raA~~i~ 108 (110)
+.||-|||.++....| ++-+++..|.+|++.+.
T Consensus 387 ~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa 426 (657)
T PRK08626 387 KGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVA 426 (657)
T ss_pred CCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 3799999987633222 44667778888776653
No 169
>KOG2415|consensus
Probab=20.16 E-value=66 Score=25.70 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.1
Q ss_pred CcEEEcccccccccccch--------hHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQYATV--------NGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~--------~GA~~SG~raA~~i~~ 109 (110)
|+|.|-|-..--...|+| |-|+.||..||+.|.+
T Consensus 379 Pkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ 420 (621)
T KOG2415|consen 379 PKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFE 420 (621)
T ss_pred cccccCCceEeecccccccccccccchhhhhcchhHHHHHHH
Confidence 688899988766666665 7899999999998753
No 170
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.01 E-value=1.7e+02 Score=22.57 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=27.5
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.++||-+|+-+.. +...+-|...|..+|+.|+.
T Consensus 304 s~~~IyA~GD~~~~--~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 304 SVPGVWVIGDVTSG--PMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred CCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 44689999999864 45788999999999988753
Done!