Query psy7655
Match_columns 110
No_of_seqs 140 out of 1022
Neff 8.4
Searched_HMMs 29240
Date Sat Aug 17 00:00:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e1m_C L-glutamate oxidase; L- 99.9 6.4E-28 2.2E-32 163.4 6.4 97 2-109 52-150 (181)
2 2z3y_A Lysine-specific histone 99.9 2.2E-25 7.5E-30 174.6 10.7 106 1-109 544-656 (662)
3 2xag_A Lysine-specific histone 99.9 1.8E-24 6E-29 173.6 11.2 106 1-109 715-827 (852)
4 4gut_A Lysine-specific histone 99.9 1.9E-24 6.6E-29 172.1 8.7 100 2-109 676-775 (776)
5 3k7m_X 6-hydroxy-L-nicotine ox 99.9 1.3E-23 4.3E-28 155.6 8.8 86 12-109 339-424 (431)
6 1rsg_A FMS1 protein; FAD bindi 99.9 4.2E-23 1.4E-27 157.0 7.7 102 2-109 385-505 (516)
7 1b37_A Protein (polyamine oxid 99.9 1.1E-21 3.8E-26 147.5 8.8 99 2-109 358-456 (472)
8 2vvm_A Monoamine oxidase N; FA 99.8 3E-21 1E-25 145.4 7.1 95 4-109 389-483 (495)
9 1s3e_A Amine oxidase [flavin-c 99.8 2.2E-20 7.5E-25 141.8 8.2 99 2-109 353-452 (520)
10 2yg5_A Putrescine oxidase; oxi 99.8 3.6E-20 1.2E-24 138.0 8.3 97 3-109 352-449 (453)
11 2iid_A L-amino-acid oxidase; f 99.8 1.5E-19 5.1E-24 136.3 7.6 98 1-109 381-482 (498)
12 2jae_A L-amino acid oxidase; o 99.7 6.2E-18 2.1E-22 127.2 7.5 98 2-109 380-483 (489)
13 3ayj_A Pro-enzyme of L-phenyla 99.5 1.9E-15 6.6E-20 119.6 2.2 92 8-109 565-677 (721)
14 1sez_A Protoporphyrinogen oxid 99.2 1.7E-11 5.9E-16 92.2 6.1 90 2-109 402-491 (504)
15 3lov_A Protoporphyrinogen oxid 99.1 3.6E-11 1.2E-15 89.8 3.9 90 2-109 373-463 (475)
16 3i6d_A Protoporphyrinogen oxid 99.0 1.3E-10 4.5E-15 86.1 4.0 90 2-109 376-466 (470)
17 2ivd_A PPO, PPOX, protoporphyr 99.0 1.3E-09 4.5E-14 81.4 6.9 89 3-109 383-471 (478)
18 3qj4_A Renalase; FAD/NAD(P)-bi 98.9 2.6E-09 8.9E-14 76.8 7.5 85 2-109 255-340 (342)
19 1yvv_A Amine oxidase, flavin-c 98.6 6.6E-08 2.3E-12 68.7 6.7 84 2-109 242-325 (336)
20 3nks_A Protoporphyrinogen oxid 98.5 1.9E-07 6.6E-12 69.5 6.8 90 3-109 383-472 (477)
21 4gde_A UDP-galactopyranose mut 98.3 2.6E-07 9E-12 69.1 3.7 94 3-110 384-478 (513)
22 3ka7_A Oxidoreductase; structu 98.3 8.3E-07 2.8E-11 65.1 5.5 82 7-108 343-424 (425)
23 2b9w_A Putative aminooxidase; 98.2 9.7E-07 3.3E-11 64.8 4.6 86 3-108 338-423 (424)
24 3nrn_A Uncharacterized protein 97.9 3E-05 1E-09 56.9 6.9 78 4-107 324-403 (421)
25 3kkj_A Amine oxidase, flavin-c 97.9 3E-05 1E-09 51.3 5.7 81 5-109 245-325 (336)
26 4dgk_A Phytoene dehydrogenase; 97.4 0.00022 7.6E-09 53.2 5.8 36 66-109 454-489 (501)
27 4dsg_A UDP-galactopyranose mut 96.7 0.0013 4.3E-08 49.7 3.6 93 3-110 360-455 (484)
28 1v0j_A UDP-galactopyranose mut 95.9 0.0026 8.8E-08 46.7 1.6 32 77-109 354-385 (399)
29 3fpz_A Thiazole biosynthetic e 90.2 0.099 3.4E-06 36.9 1.4 35 75-109 283-322 (326)
30 1i8t_A UDP-galactopyranose mut 88.0 0.65 2.2E-05 33.5 4.4 33 76-109 333-365 (367)
31 2bi7_A UDP-galactopyranose mut 86.8 0.44 1.5E-05 34.6 2.9 33 76-109 336-368 (384)
32 4a9w_A Monooxygenase; baeyer-v 86.0 0.84 2.9E-05 31.6 4.0 34 75-109 314-349 (357)
33 2cul_A Glucose-inhibited divis 85.4 0.94 3.2E-05 30.3 3.8 33 74-109 197-229 (232)
34 2i0z_A NAD(FAD)-utilizing dehy 85.0 0.84 2.9E-05 33.6 3.7 33 76-108 405-440 (447)
35 2gqf_A Hypothetical protein HI 84.4 1.1 3.8E-05 32.7 4.1 34 76-109 364-400 (401)
36 3fbs_A Oxidoreductase; structu 83.7 1.5 5.2E-05 29.5 4.4 33 74-108 256-288 (297)
37 3v76_A Flavoprotein; structura 80.4 1.2 4.3E-05 32.7 3.1 31 76-106 383-416 (417)
38 3itj_A Thioredoxin reductase 1 80.3 2.4 8.3E-05 29.1 4.4 34 75-109 299-332 (338)
39 3f8d_A Thioredoxin reductase ( 78.4 3.2 0.00011 28.2 4.5 36 74-109 278-314 (323)
40 3r9u_A Thioredoxin reductase; 78.0 3.2 0.00011 28.2 4.4 34 75-109 276-309 (315)
41 4gcm_A TRXR, thioredoxin reduc 74.7 4.5 0.00015 27.7 4.5 33 75-108 270-302 (312)
42 3cty_A Thioredoxin reductase; 74.6 4.4 0.00015 27.8 4.4 34 74-108 279-312 (319)
43 2zbw_A Thioredoxin reductase; 73.1 4.5 0.00015 27.9 4.2 34 75-108 279-313 (335)
44 1trb_A Thioredoxin reductase; 73.0 5.1 0.00018 27.3 4.4 34 74-108 277-310 (320)
45 2q0l_A TRXR, thioredoxin reduc 72.9 5.2 0.00018 27.2 4.4 33 75-108 273-305 (311)
46 1fl2_A Alkyl hydroperoxide red 72.2 5.7 0.00019 27.0 4.5 34 75-109 269-302 (310)
47 3lzw_A Ferredoxin--NADP reduct 72.0 4.9 0.00017 27.4 4.2 36 74-109 276-312 (332)
48 1vdc_A NTR, NADPH dependent th 71.7 5.6 0.00019 27.4 4.4 34 74-108 286-319 (333)
49 3oz2_A Digeranylgeranylglycero 70.2 3.6 0.00012 28.8 3.2 33 76-108 277-312 (397)
50 2q7v_A Thioredoxin reductase; 69.7 6.6 0.00023 27.0 4.4 33 75-108 276-308 (325)
51 2a87_A TRXR, TR, thioredoxin r 69.7 6.5 0.00022 27.2 4.4 33 75-108 280-312 (335)
52 3h8l_A NADH oxidase; membrane 66.3 7.8 0.00027 27.8 4.3 35 74-108 298-332 (409)
53 3ab1_A Ferredoxin--NADP reduct 65.6 7.9 0.00027 27.0 4.2 34 75-108 290-324 (360)
54 2gjc_A Thiazole biosynthetic e 60.0 8.2 0.00028 27.7 3.4 34 76-109 284-322 (326)
55 3l8k_A Dihydrolipoyl dehydroge 59.5 14 0.00047 27.2 4.7 34 74-109 299-332 (466)
56 2vdc_G Glutamate synthase [NAD 59.4 12 0.00041 27.7 4.3 33 74-108 408-440 (456)
57 3dk9_A Grase, GR, glutathione 59.2 14 0.00048 27.1 4.7 34 74-109 322-355 (478)
58 4dna_A Probable glutathione re 58.8 15 0.00051 26.9 4.7 34 74-109 297-330 (463)
59 4a5l_A Thioredoxin reductase; 58.7 15 0.0005 24.9 4.4 33 75-108 276-308 (314)
60 2ywl_A Thioredoxin reductase r 58.7 18 0.0006 22.5 4.6 34 74-108 134-167 (180)
61 3klj_A NAD(FAD)-dependent dehy 58.7 11 0.00039 27.1 4.0 35 75-109 257-293 (385)
62 3h28_A Sulfide-quinone reducta 56.8 15 0.00053 26.5 4.5 35 75-109 286-330 (430)
63 1rp0_A ARA6, thiazole biosynth 56.5 5.8 0.0002 27.2 2.1 34 76-109 234-272 (284)
64 4fk1_A Putative thioredoxin re 55.1 11 0.00038 25.7 3.4 34 74-108 263-296 (304)
65 3qfa_A Thioredoxin reductase 1 54.9 19 0.00066 26.9 4.8 35 74-109 345-379 (519)
66 3o0h_A Glutathione reductase; 54.1 18 0.00062 26.7 4.5 34 74-109 317-350 (484)
67 1ufz_A Hypothetical protein BA 54.1 10 0.00035 21.9 2.5 23 6-30 30-52 (83)
68 3dgh_A TRXR-1, thioredoxin red 53.4 21 0.00073 26.2 4.8 35 74-109 317-351 (483)
69 2zxi_A TRNA uridine 5-carboxym 52.6 10 0.00034 29.9 3.0 30 76-107 390-422 (637)
70 3sx6_A Sulfide-quinone reducta 52.6 19 0.00063 26.2 4.3 34 75-108 297-340 (437)
71 3dgz_A Thioredoxin reductase 2 52.4 22 0.00076 26.2 4.8 35 74-109 317-351 (488)
72 3cp8_A TRNA uridine 5-carboxym 50.3 14 0.00049 29.0 3.6 28 76-106 379-406 (641)
73 1ges_A Glutathione reductase; 49.7 26 0.00088 25.6 4.7 34 74-109 294-327 (450)
74 1xhc_A NADH oxidase /nitrite r 48.8 21 0.0007 25.4 4.0 35 75-109 260-296 (367)
75 2hqm_A GR, grase, glutathione 48.4 27 0.00091 25.7 4.7 34 74-109 313-346 (479)
76 3lad_A Dihydrolipoamide dehydr 47.6 26 0.00088 25.7 4.5 32 75-108 310-341 (476)
77 2qae_A Lipoamide, dihydrolipoy 47.5 25 0.00085 25.7 4.4 35 74-109 305-339 (468)
78 2v3a_A Rubredoxin reductase; a 47.3 25 0.00084 24.9 4.2 35 74-108 268-304 (384)
79 1hyu_A AHPF, alkyl hydroperoxi 47.2 26 0.00089 26.3 4.5 33 75-108 480-512 (521)
80 3a1g_A RNA-directed RNA polyme 45.9 10 0.00035 21.5 1.5 28 4-32 6-33 (80)
81 3lxd_A FAD-dependent pyridine 45.7 23 0.00077 25.4 3.8 36 74-109 276-320 (415)
82 2x8g_A Thioredoxin glutathione 45.2 29 0.001 26.3 4.6 35 74-109 424-458 (598)
83 3urh_A Dihydrolipoyl dehydroge 44.3 29 0.00098 25.6 4.3 34 74-109 329-362 (491)
84 1zk7_A HGII, reductase, mercur 43.4 32 0.0011 25.1 4.4 33 75-109 301-333 (467)
85 1zmd_A Dihydrolipoyl dehydroge 43.0 32 0.0011 25.1 4.4 34 74-109 311-344 (474)
86 1fec_A Trypanothione reductase 42.9 36 0.0012 25.2 4.6 34 74-109 317-350 (490)
87 2gqw_A Ferredoxin reductase; f 42.7 29 0.00099 25.0 4.0 36 74-109 264-307 (408)
88 2wpf_A Trypanothione reductase 42.5 36 0.0012 25.2 4.6 34 74-109 321-354 (495)
89 3ic9_A Dihydrolipoamide dehydr 41.9 35 0.0012 25.2 4.5 33 75-109 305-337 (492)
90 2r9z_A Glutathione amide reduc 41.7 40 0.0014 24.7 4.7 33 75-109 294-326 (463)
91 3fg2_P Putative rubredoxin red 41.6 23 0.0008 25.3 3.4 36 74-109 266-309 (404)
92 3ces_A MNMG, tRNA uridine 5-ca 41.2 27 0.00091 27.6 3.8 26 76-104 385-410 (651)
93 2a8x_A Dihydrolipoyl dehydroge 41.1 38 0.0013 24.7 4.5 34 74-109 300-333 (464)
94 2bcg_G Secretory pathway GDP d 40.9 37 0.0013 24.8 4.4 30 76-108 409-438 (453)
95 3ef6_A Toluene 1,2-dioxygenase 40.6 31 0.0011 24.8 3.9 36 74-109 266-308 (410)
96 1v59_A Dihydrolipoamide dehydr 40.5 39 0.0013 24.7 4.5 33 75-109 317-349 (478)
97 1gte_A Dihydropyrimidine dehyd 39.9 37 0.0013 27.9 4.6 33 74-108 472-504 (1025)
98 3k30_A Histamine dehydrogenase 39.3 28 0.00097 27.0 3.7 31 76-109 642-672 (690)
99 3vrd_B FCCB subunit, flavocyto 39.0 44 0.0015 23.6 4.5 35 74-108 285-320 (401)
100 1dxl_A Dihydrolipoamide dehydr 38.7 38 0.0013 24.6 4.2 33 74-108 308-340 (470)
101 1ebd_A E3BD, dihydrolipoamide 38.3 39 0.0013 24.5 4.2 33 75-109 300-332 (455)
102 3nlc_A Uncharacterized protein 38.2 22 0.00075 27.2 2.9 31 77-109 510-540 (549)
103 1xdi_A RV3303C-LPDA; reductase 37.9 44 0.0015 24.7 4.5 34 74-109 308-341 (499)
104 1chu_A Protein (L-aspartate ox 36.7 35 0.0012 25.8 3.8 37 66-108 364-407 (540)
105 3m20_A 4-oxalocrotonate tautom 36.4 46 0.0016 17.1 3.4 37 7-46 16-52 (62)
106 3g5s_A Methylenetetrahydrofola 36.2 28 0.00097 26.2 3.1 30 76-107 329-361 (443)
107 1q1r_A Putidaredoxin reductase 36.0 37 0.0013 24.6 3.7 36 74-109 275-318 (431)
108 3ntd_A FAD-dependent pyridine 35.7 46 0.0016 24.8 4.3 36 74-109 294-337 (565)
109 1jnr_A Adenylylsulfate reducta 35.5 44 0.0015 25.8 4.2 36 66-107 428-463 (643)
110 1mo9_A ORF3; nucleotide bindin 35.4 44 0.0015 24.9 4.2 33 74-108 344-376 (523)
111 1ojt_A Surface protein; redox- 35.2 46 0.0016 24.4 4.2 33 74-108 315-347 (482)
112 2eq6_A Pyruvate dehydrogenase 33.9 50 0.0017 24.1 4.2 33 74-108 300-332 (464)
113 3ry0_A Putative tautomerase; o 33.6 53 0.0018 17.0 3.3 35 7-44 17-51 (65)
114 1onf_A GR, grase, glutathione 32.9 57 0.002 24.1 4.4 21 89-109 350-370 (500)
115 2yqu_A 2-oxoglutarate dehydrog 32.9 61 0.0021 23.5 4.5 32 75-108 294-325 (455)
116 2dnw_A Acyl carrier protein; A 32.8 44 0.0015 19.0 3.1 22 1-22 8-29 (99)
117 4g6h_A Rotenone-insensitive NA 32.8 51 0.0018 24.6 4.1 35 74-108 363-397 (502)
118 3kd9_A Coenzyme A disulfide re 31.8 61 0.0021 23.4 4.3 36 74-109 271-314 (449)
119 2cdu_A NADPH oxidase; flavoenz 31.8 35 0.0012 24.8 3.0 35 74-108 273-315 (452)
120 2bc0_A NADH oxidase; flavoprot 31.5 60 0.002 23.9 4.3 36 74-109 317-360 (490)
121 1lvl_A Dihydrolipoamide dehydr 31.1 60 0.002 23.7 4.2 33 74-108 296-328 (458)
122 3oc4_A Oxidoreductase, pyridin 29.5 26 0.00087 25.5 1.9 34 75-108 271-312 (452)
123 3m21_A Probable tautomerase HP 29.4 66 0.0022 16.7 3.7 36 7-45 20-55 (67)
124 2zet_C Melanophilin; complex, 28.9 47 0.0016 21.1 2.9 19 2-21 15-33 (153)
125 3o5y_A Sensor protein; GAF dom 28.9 47 0.0016 20.7 2.9 20 3-22 3-22 (165)
126 3sk7_A Protein SEQA; sequestra 28.9 10 0.00035 23.3 -0.3 11 74-84 50-60 (116)
127 2qzg_A Conserved uncharacteriz 28.8 80 0.0027 18.5 3.6 20 3-22 9-28 (94)
128 3iwa_A FAD-dependent pyridine 28.5 66 0.0022 23.4 4.0 36 74-109 285-328 (472)
129 2x4k_A 4-oxalocrotonate tautom 28.3 62 0.0021 16.1 3.3 16 7-22 20-35 (63)
130 1o94_A Tmadh, trimethylamine d 27.8 42 0.0014 26.4 3.0 31 76-109 667-697 (729)
131 3hdq_A UDP-galactopyranose mut 27.3 79 0.0027 23.0 4.2 34 76-110 357-390 (397)
132 1j3e_A SEQA protein; protein-D 27.3 16 0.00056 22.3 0.5 11 74-84 49-59 (115)
133 3sjr_A Uncharacterized protein 27.2 31 0.001 22.5 1.7 29 82-110 117-145 (175)
134 3gyx_A Adenylylsulfate reducta 26.9 62 0.0021 25.3 3.8 32 76-107 453-484 (662)
135 2kwl_A ACP, acyl carrier prote 26.2 72 0.0025 17.1 3.1 21 2-22 3-23 (84)
136 1cjc_A Protein (adrenodoxin re 26.2 48 0.0017 24.4 2.9 32 76-108 360-391 (460)
137 3ej9_A Alpha-subunit of trans- 25.9 68 0.0023 17.4 2.9 39 8-49 19-57 (76)
138 3cgb_A Pyridine nucleotide-dis 25.7 87 0.003 22.9 4.3 34 75-108 310-351 (480)
139 1lrr_A SEQA protein; protein-D 25.5 16 0.00056 22.9 0.2 11 74-84 65-75 (131)
140 2opa_A Probable tautomerase YW 25.3 72 0.0025 15.9 3.3 15 8-22 18-32 (61)
141 1y56_A Hypothetical protein PH 25.2 76 0.0026 23.5 3.9 30 76-108 344-373 (493)
142 1p3q_Q VPS9P, vacuolar protein 25.0 42 0.0014 17.6 1.7 13 10-22 12-24 (54)
143 2gmh_A Electron transfer flavo 24.9 60 0.002 24.7 3.3 33 76-108 347-382 (584)
144 3ics_A Coenzyme A-disulfide re 24.5 84 0.0029 23.6 4.1 36 74-109 309-352 (588)
145 3jsk_A Cypbp37 protein; octame 24.2 41 0.0014 24.2 2.2 34 76-109 294-332 (344)
146 2zjr_V 50S ribosomal protein L 24.1 72 0.0025 17.3 2.7 22 1-22 6-27 (67)
147 1wn9_A The hypothetical protei 24.0 98 0.0033 19.2 3.5 29 14-43 14-42 (131)
148 2av5_A Ribonuclease P protein 23.9 59 0.002 19.5 2.6 20 3-22 28-47 (120)
149 2czv_C Ribonuclease P protein 23.9 59 0.002 19.5 2.6 20 3-22 28-47 (120)
150 3mb2_A 4-oxalocrotonate tautom 23.8 72 0.0025 16.9 2.7 16 7-22 18-33 (72)
151 4eqs_A Coenzyme A disulfide re 23.6 1E+02 0.0035 22.3 4.3 36 74-109 267-310 (437)
152 3fyr_A Sporulation inhibitor S 23.5 85 0.0029 16.0 2.9 18 1-18 3-20 (48)
153 2cqk_A C-MPL binding protein; 23.5 82 0.0028 18.6 3.1 20 3-22 8-27 (101)
154 3ej9_B Beta-subunit of trans-3 23.3 1E+02 0.0036 17.0 3.2 43 2-47 9-54 (70)
155 1x3o_A Acyl carrier protein; s 21.8 96 0.0033 16.2 3.0 19 4-22 1-19 (80)
156 3iev_A GTP-binding protein ERA 21.7 47 0.0016 23.0 2.0 40 7-47 264-303 (308)
157 3r8s_Y 50S ribosomal protein L 21.6 59 0.002 17.4 2.0 21 1-21 6-26 (63)
158 1otf_A 4-oxalocrotonate tautom 21.4 89 0.0031 15.5 2.9 15 8-22 18-32 (62)
159 3c96_A Flavin-containing monoo 21.1 59 0.002 23.1 2.5 34 75-108 302-338 (410)
160 1nhp_A NADH peroxidase; oxidor 20.9 77 0.0026 22.9 3.1 34 75-108 273-314 (447)
161 3hyw_A Sulfide-quinone reducta 20.7 1.4E+02 0.0048 21.4 4.5 36 74-109 285-330 (430)
162 2dhy_A CUE domain-containing p 20.6 53 0.0018 17.9 1.7 12 11-22 19-30 (67)
163 1qey_A MNT-C, protein (regulat 20.4 79 0.0027 14.5 2.4 16 7-22 13-28 (31)
164 1lqt_A FPRA; NADP+ derivative, 20.4 82 0.0028 23.1 3.2 33 75-108 351-383 (456)
165 3fmt_A Protein SEQA; protein-D 20.3 23 0.00079 23.0 0.1 11 74-84 96-106 (162)
No 1
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.94 E-value=6.4e-28 Score=163.39 Aligned_cols=97 Identities=23% Similarity=0.186 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCcccee--eccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEE
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARI--LTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLL 79 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~--~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~ 79 (110)
+.|+++++++.++++|+++|| +++..+..+ +.++|.+|||++|+|++++||+... ..+.|++|++ |||
T Consensus 52 ~~l~~~e~~~~~l~~L~~~~g--~~~~~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~--~~~~l~~p~g------rl~ 121 (181)
T 2e1m_C 52 DSFDDAERYGYALENLQSVHG--RRIEVFYTGAGQTQSWLRDPYACGEAAVYTPHQMTA--FHLDVVRPEG------PVY 121 (181)
T ss_dssp TTSCTTTTHHHHHHHHHHHHC--GGGGGTEEEEEEEEESSSCTTTSSSEECCCTTHHHH--HHHHHHSCBT------TEE
T ss_pred HcCCHHHHHHHHHHHHHHHhC--CCcHhhccCcceecccCCCCCCCCcccCcCCCchHH--HHHHHhCCCC------cEE
Confidence 578999999999999999997 455333477 9999999999999999999998753 5678999984 899
Q ss_pred EcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 80 FAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 80 FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
||||||+. ++||||||++||+|+|++|++
T Consensus 122 FAGe~ts~-~~g~~eGAl~SG~raA~~i~~ 150 (181)
T 2e1m_C 122 FAGEHVSL-KHAWIEGAVETAVRAAIAVNE 150 (181)
T ss_dssp ECSGGGTT-STTSHHHHHHHHHHHHHHHHT
T ss_pred EEEHHHcC-CccCHHHHHHHHHHHHHHHHH
Confidence 99999996 999999999999999999985
No 2
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=99.92 E-value=2.2e-25 Score=174.57 Aligned_cols=106 Identities=29% Similarity=0.481 Sum_probs=92.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCC-------CC
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSN-------GM 73 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~-------~~ 73 (110)
++.++++++++.++++|+++|| ....++|+.+.+++|.+|||++|+|++++||+... +++.|++|+.+ ..
T Consensus 544 ~~~lsdee~~~~~l~~L~~~~g-~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~--~~~~l~~p~~~~~~~~~~~~ 620 (662)
T 2z3y_A 544 MENISDDVIVGRCLAILKGIFG-SSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGN--DYDLMAQPITPGPSIPGAPQ 620 (662)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHC-TTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTH--HHHHHHCCBCC---------
T ss_pred HHhCCHHHHHHHHHHHHHHHhC-CcccCCCceeEEEEECCCCCCCcccccCCCCCchh--hHHHHhCcCccccccccccC
Confidence 3678999999999999999998 34567999999999999999999999999998654 67789999852 11
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..+|||||||||+..++||||||++||+|||++|++
T Consensus 621 ~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~ 656 (662)
T 2z3y_A 621 PIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIAD 656 (662)
T ss_dssp CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 236999999999999999999999999999999974
No 3
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=99.91 E-value=1.8e-24 Score=173.60 Aligned_cols=106 Identities=29% Similarity=0.481 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCC-------CC
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSN-------GM 73 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~-------~~ 73 (110)
++.++++++++.++++|+++|| ....++|+.+.+++|.+|||++|+|++++||+... +++.|++|+.+ ..
T Consensus 715 l~~lsdeel~~~~l~~L~~ifG-~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~--~~~~L~~P~~~~~~~p~~~~ 791 (852)
T 2xag_A 715 MENISDDVIVGRCLAILKGIFG-SSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGN--DYDLMAQPITPGPSIPGAPQ 791 (852)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHC-TTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTT--HHHHTTSCBCCCCSSTTCCC
T ss_pred HhcCCHHHHHHHHHHHHHHHhC-ccccCCceEEEEEecCCCCCcCccccccCCCcchh--hHHHHhCccccccccccccC
Confidence 3578999999999999999998 34567999999999999999999999999998654 67889999852 12
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..+|||||||||+..++||||||++||+|||++|++
T Consensus 792 ~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~ 827 (852)
T 2xag_A 792 PIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIAD 827 (852)
T ss_dssp CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHH
Confidence 336999999999999999999999999999999874
No 4
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=99.91 E-value=1.9e-24 Score=172.07 Aligned_cols=100 Identities=28% Similarity=0.443 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
+.++++++++.++++|+++|| ....+.|+.+.+++|.+|||++|+|+++.||+... .++.|++|+. +|||||
T Consensus 676 ~~lsdeel~~~~l~~L~~ifg-~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~--~~~~L~~p~~-----grL~FA 747 (776)
T 4gut_A 676 RTLDDKQVLQQCMATLRELFK-EQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGE--AYDIIAEDIQ-----GTVFFA 747 (776)
T ss_dssp HTSCHHHHHHHHHHHHHHHTT-TSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTH--HHHHHHCCBT-----TTEEEC
T ss_pred HcCCHHHHHHHHHHHHHHHhC-cccccCcceEEEecCCCCCccCCCCCccCCCCchh--HHHHHhCcCC-----CcEEEE
Confidence 468999999999999999998 34678999999999999999999999988887543 5678999985 499999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
||||+..++||||||++||+|+|++|++
T Consensus 748 GE~Ts~~~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 748 GEATNRHFPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp SGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred ehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999985
No 5
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.89 E-value=1.3e-23 Score=155.61 Aligned_cols=86 Identities=23% Similarity=0.337 Sum_probs=77.1
Q ss_pred HHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEccccccccccc
Q psy7655 12 EVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAGEATSEDQYA 91 (110)
Q Consensus 12 ~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAGe~ts~~~~g 91 (110)
.++.+|+++|+ ++. |+.+..++|.+|||++|+|++++||+... .++.|++|++ |||||||+|+..++|
T Consensus 339 ~~~~~l~~~~~---~~~-~~~~~~~~W~~d~~~~G~~~~~~~g~~~~--~~~~l~~p~g------~~~fAGe~t~~~~~g 406 (431)
T 3k7m_X 339 AVKDAVLYYLP---EVE-VLGIDYHDWIADPLFEGPWVAPRVGQFSR--VHKELGEPAG------RIHFVGSDVSLEFPG 406 (431)
T ss_dssp HHHHHHHHHCT---TCE-EEEEECCCTTTCTTTSSSSCCCCTTTTTT--SSGGGGSCBT------TEEECSGGGCSSSTT
T ss_pred HHHHHHHHhcC---CCC-ccEeEecccCCCCCCCCCCCCcCCCCCcc--cHHHHhCCCC------cEEEEehhhhccCCe
Confidence 46678899997 343 89999999999999999999999998654 6788999985 999999999999999
Q ss_pred chhHHHHHHHHHHHHHHc
Q psy7655 92 TVNGAIETGWREADRILK 109 (110)
Q Consensus 92 ~~~GA~~SG~raA~~i~~ 109 (110)
|||||++||+|||++|+.
T Consensus 407 ~~~GA~~sg~raa~~i~~ 424 (431)
T 3k7m_X 407 YIEGALETAECAVNAILH 424 (431)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred EehHHHHHHHHHHHHHHh
Confidence 999999999999999985
No 6
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=99.88 E-value=4.2e-23 Score=156.96 Aligned_cols=102 Identities=25% Similarity=0.334 Sum_probs=74.1
Q ss_pred CCC--CHHHHHHH---HHHHHHHHhCC-----CCCCC-------ccc--eeeccccCCCCCCCcccCCCCCCcccccccH
Q psy7655 2 ESL--TDKQVQIE---VMKAFRFFLGA-----KYTIP-------EPA--RILTTSWGSNKHFRGSYSIRTLTTERLNTSA 62 (110)
Q Consensus 2 ~~l--s~e~~~~~---~~~~L~~~fg~-----~~~~~-------~~~--~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~ 62 (110)
+.| +++++++. ++++|.++||. +...+ .|+ ++.+++|.+|||++|+|+++.||+... ...
T Consensus 385 ~~l~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~~~~~~~~W~~dp~~~Gsys~~~~g~~~~-~~~ 463 (516)
T 1rsg_A 385 ESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPV-DMV 463 (516)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHTTCCCCEECCC-------CCSCEEEEEEECCTTTCTTTTTCCCCCBC----C-HHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhhccccccccCCCCcccccccCCCccceEEEecCCCCCCCCccCCCcCCCCCHH-HHH
Confidence 345 88888765 55666666651 11111 254 899999999999999999999987532 134
Q ss_pred HHhcCccCCCCCCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 63 AELGAPVSNGMGKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 63 ~~l~~p~~~~~~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..|.+|.. +|||||||||+..++||||||++||+|||++|++
T Consensus 464 ~~l~~~~~-----~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~ 505 (516)
T 1rsg_A 464 VAMSNGQD-----SRIRFAGEHTIMDGAGCAYGAWESGRREATRISD 505 (516)
T ss_dssp HHHHHCSS-----SSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCC-----CcEEEeccccccCCCccchhHHHHHHHHHHHHHH
Confidence 55664332 4999999999999999999999999999999974
No 7
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=99.86 E-value=1.1e-21 Score=147.49 Aligned_cols=99 Identities=29% Similarity=0.522 Sum_probs=88.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
+.++++++++.++++|+++|| +..++.|+.+.+++|..|||++|+|+++.||.... ..+.+++|++ +||||
T Consensus 358 ~~~~~~e~~~~~l~~L~~~~P-g~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~--~~~~l~~p~~------~l~fA 428 (472)
T 1b37_A 358 EQQSDEQTKAEIMQVLRKMFP-GKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRY--EYDQLRAPVG------RVYFT 428 (472)
T ss_dssp HTSCHHHHHHHHHHHHHHHCT-TSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHH--HHHHHHCCBT------TEEEC
T ss_pred HhCCHHHHHHHHHHHHHHHcC-CCCCCCCceEEecccCCCCCCCcccCCCCCCCChh--HHHHHhccCC------cEEEe
Confidence 357899999999999999996 35677899999999999999999999888887542 4678999995 89999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
||+|+..++|+||||++||.+||++|++
T Consensus 429 G~~t~~~~~g~v~GA~~SG~~aA~~i~~ 456 (472)
T 1b37_A 429 GEHTSEHYNGYVHGAYLSGIDSAEILIN 456 (472)
T ss_dssp SGGGCTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred ecccCCCCCCchhHHHHHHHHHHHHHHH
Confidence 9999998999999999999999999874
No 8
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=99.84 E-value=3e-21 Score=145.45 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEccc
Q psy7655 4 LTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAGE 83 (110)
Q Consensus 4 ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAGe 83 (110)
++++++++.++++|++++| ....|..+.+++|.+|||++|+|++++||.... ..+.+++|++ |||||||
T Consensus 389 ~~~~e~~~~~~~~L~~~~~---~~~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~--~~~~l~~p~~------~l~fAGe 457 (495)
T 2vvm_A 389 IQPDEDVRETLKAVGQLAP---GTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSE--CLQGLREKHG------GVVFANS 457 (495)
T ss_dssp CCTTTCHHHHHHHHHTTST---TSCCEEEEEECCTTTCTTTSSSSCCCCTTHHHH--HHHHHHCCBT------TEEECCG
T ss_pred CCCHHHHHHHHHHHHHhcC---CCCCceEEEEeEcCCCCCCCCCccCcCCCcchh--hHHHHhCcCC------CEEEech
Confidence 4566788899999999987 356889999999999999999999999998642 4678999985 8999999
Q ss_pred ccccccccchhHHHHHHHHHHHHHHc
Q psy7655 84 ATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 84 ~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+|+..++||||||++||+|||++|++
T Consensus 458 ~t~~~~~g~veGAi~SG~raA~~i~~ 483 (495)
T 2vvm_A 458 DWALGWRSFIDGAIEEGTRAARVVLE 483 (495)
T ss_dssp GGCSSSTTSHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCceEEEhHHHHHHHHHHHHHH
Confidence 99988999999999999999999874
No 9
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=99.82 E-value=2.2e-20 Score=141.84 Aligned_cols=99 Identities=24% Similarity=0.333 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccC-CCCCCcccccccHHHhcCccCCCCCCCcEEE
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYS-IRTLTTERLNTSAAELGAPVSNGMGKPVLLF 80 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys-~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~F 80 (110)
+.++++++++.++++|+++|| ......|+.+.+++|.+|||++|+|+ ++.||.... ..+.+++|++ +|||
T Consensus 353 ~~~~~~e~~~~vl~~L~~~~~-~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~--~~~~l~~p~~------~L~f 423 (520)
T 1s3e_A 353 ARLTKEERLKKLCELYAKVLG-SLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQ--YGRVLRQPVD------RIYF 423 (520)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT-CGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHH--HGGGTTCCBT------TEEE
T ss_pred hcCCHHHHHHHHHHHHHHHhC-ccccCCccEEEEEeeCCCCCCCCCCccccCCCcccc--chHHHhCCCC------CEEE
Confidence 468999999999999999998 33367899999999999999999998 788887532 3346888985 8999
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 81 AGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 81 AGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|||+|+..++|+|+||++||.++|++|++
T Consensus 424 AG~~t~~~~~g~v~GAi~SG~~aA~~i~~ 452 (520)
T 1s3e_A 424 AGTETATHWSGYMEGAVEAGERAAREILH 452 (520)
T ss_dssp CSGGGCSSSTTSHHHHHHHHHHHHHHHHH
T ss_pred eehhhcCcCcEEhHHHHHHHHHHHHHHHH
Confidence 99999998999999999999999999974
No 10
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=99.81 E-value=3.6e-20 Score=137.96 Aligned_cols=97 Identities=25% Similarity=0.447 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccC-CCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYS-IRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys-~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
.++++++++.++++|+++|| ..+..|+.+.+++|.++||++|+|+ ++.||.... ..+.+++|++ +||||
T Consensus 352 ~~~~~~~~~~~l~~L~~~~~--~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~--~~~~~~~p~~------~l~~a 421 (453)
T 2yg5_A 352 ELSAEERKATILASLARYLG--PKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLHR--YGADSRTPVG------PIHFS 421 (453)
T ss_dssp HSCHHHHHHHHHHHHHHHHC--GGGGCCSEEEECCTTTCTTTCSSSCEEECTTHHHH--HGGGTTCCBT------TEEEC
T ss_pred cCCHHHHHHHHHHHHHHHhC--ccCCCccEEEEeecCCCCCCCCCCcCcCCCCcccc--chHHHhCCcC------ceEEe
Confidence 47899999999999999998 4677899999999999999999997 567875432 2346888885 89999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|++|+..++|+|+||++||.++|++|++
T Consensus 422 G~~~~~~~~g~v~gA~~SG~~aA~~i~~ 449 (453)
T 2yg5_A 422 CSDIAAEGYQHVDGAVRMGQRTAADIIA 449 (453)
T ss_dssp CGGGCSTTTTSHHHHHHHHHHHHHHHHH
T ss_pred ecccccccccchHHHHHHHHHHHHHHHH
Confidence 9999988999999999999999999974
No 11
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=99.79 E-value=1.5e-19 Score=136.25 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=81.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCCc----cceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCC
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLGAKYTIPE----PARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKP 76 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg~~~~~~~----~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~ 76 (110)
++.++++++++.++++|+++|| ...+. +..+.+++|.+|||++|+|+++.|+.... ..+.+.+|++
T Consensus 381 ~~~~~~~~~~~~~l~~L~~~~g--~~~~~~~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~--~~~~l~~p~~------ 450 (498)
T 2iid_A 381 FQALDFKDCADIVFNDLSLIHQ--LPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQH--FSDPLTASQG------ 450 (498)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHT--CCHHHHHHHEEEEEEEEGGGCTTTCSSEECCCTTHHHH--HHHHHHCCBT------
T ss_pred hhcCCHHHHHHHHHHHHHHHcC--CChhhhhhhcCccEEEecCCCCCCCceeeecCCcchHH--HHHHHhCCCC------
Confidence 3578999999999999999998 22221 23478899999999999999999987542 4567888885
Q ss_pred cEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 77 VLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 77 rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|||||||+|+.. +|||+||++||.|+|++|++
T Consensus 451 ~l~fAGe~t~~~-~g~~~GAi~SG~raA~~i~~ 482 (498)
T 2iid_A 451 RIYFAGEYTAQA-HGWIDSTIKSGLRAARDVNL 482 (498)
T ss_dssp TEEECSGGGSSS-SSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcccccC-CcCHHHHHHHHHHHHHHHHH
Confidence 899999999864 59999999999999999874
No 12
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=99.73 E-value=6.2e-18 Score=127.19 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCC------CCcccccccHHHhcCccCCCCCC
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRT------LTTERLNTSAAELGAPVSNGMGK 75 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~------~g~~~~~~~~~~l~~p~~~~~~~ 75 (110)
+.++++++++.++++|+++|| ......|.....++|.++||++|+|+.+. |+.... ..+.+++|++
T Consensus 380 ~~~~~~~~~~~~l~~L~~~~~-~~~~~~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~--~~~~l~~~~~----- 451 (489)
T 2jae_A 380 ESLTHRQRLAKAIAEGSEIHG-EKYTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATP--EYEKLLEPVD----- 451 (489)
T ss_dssp HTSCHHHHHHHHHHHHHHHHC-GGGGSSEEEEEEEEGGGSTTTSCSSCEETTC-------CCH--HHHHHTSCBT-----
T ss_pred hcCCHHHHHHHHHHHHHHHcC-cchhhhccccEEEEcCCCCCCCCcchhcccccCCCcccchh--hHHHHhCCCC-----
Confidence 357999999999999999998 21345778888899999999999999776 775432 5677888874
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+|||||++|+. +.++|+||+.||.++|++|+.
T Consensus 452 -~l~faG~~~~~-~~~~v~gAi~sg~~aA~~i~~ 483 (489)
T 2jae_A 452 -KIYFAGDHLSN-AIAWQHGALTSARDVVTHIHE 483 (489)
T ss_dssp -TEEECSGGGBS-STTSHHHHHHHHHHHHHHHHH
T ss_pred -cEEEeEHHhcc-CccHHHHHHHHHHHHHHHHHH
Confidence 89999999985 889999999999999999874
No 13
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=99.52 E-value=1.9e-15 Score=119.59 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=70.0
Q ss_pred HHHHHHHHHHH--HHhCCCCCC-------------CccceeeccccCCCCCCCcccCCCCCCcccccccHH------Hhc
Q psy7655 8 QVQIEVMKAFR--FFLGAKYTI-------------PEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAA------ELG 66 (110)
Q Consensus 8 ~~~~~~~~~L~--~~fg~~~~~-------------~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~------~l~ 66 (110)
++++.+++.|. ++|| ... ..+.+++.++|.+|| +.|+|..+.||+........ .+.
T Consensus 565 ~~~~~~l~~la~~~~~p--~~~~~~~~~~~~l~~~~~~~~~~~~dW~~dp-s~Gaf~~~~pgq~~~~~l~~~~~~~~~~~ 641 (721)
T 3ayj_A 565 GMYRTMVNRAYRYVKYA--GASNAQPWWFYQLLAEARTADRFVFDWTTNK-TAGGFKLDMTGDHHQSNLCFRYHTHALAA 641 (721)
T ss_dssp HHHHHHHHHTCCEECCT--TCSSCEECHHHHHHHTSCSTTCEEEEGGGST-TSSSEECCBTTTHHHHHHHHHGGGGGGCT
T ss_pred HHHHHHHHHHhhhccCc--cccccccchhhhhhhhcccCceEEEeCCCCC-CCCccccCCCccchhhhhhhhhhhhcccc
Confidence 34999999999 8998 222 124567899999999 99999999999832100011 123
Q ss_pred CccCCCCCCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 67 APVSNGMGKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 67 ~p~~~~~~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+|. +|||||||++|. +.|||+||++||++||..|+.
T Consensus 642 ~~~------gri~fAGe~~S~-~~GWieGAl~Sa~~Aa~~i~~ 677 (721)
T 3ayj_A 642 SLD------NRFFIASDSYSH-LGGWLEGAFMSALNAVAGLIV 677 (721)
T ss_dssp TTC------CCEEECSGGGSS-CTTSHHHHHHHHHHHHHHHHH
T ss_pred CCC------CCEEEeehhhcc-CCceehHHHHHHHHHHHHHHH
Confidence 333 599999999984 899999999999999998864
No 14
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=99.21 E-value=1.7e-11 Score=92.22 Aligned_cols=90 Identities=16% Similarity=0.303 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
..++++++++.++++|+++|| .. ..|+.+.+++|... |..+.+|....-.....+.+|++ +||||
T Consensus 402 ~~~~~ee~~~~v~~~L~~~~g--~~-~~p~~~~~~~w~~~------~p~~~~g~~~~~~~~~~~~~~~~------~l~~a 466 (504)
T 1sez_A 402 AKASRTELKEIVTSDLKQLLG--AE-GEPTYVNHLYWSKA------FPLYGHNYDSVLDAIDKMEKNLP------GLFYA 466 (504)
T ss_dssp TTCCHHHHHHHHHHHHHHHHC--BC-SCCSSEEEEEEEEE------EECCCTTHHHHHHHHHHHHHHST------TEEEC
T ss_pred cCCCHHHHHHHHHHHHHHHhC--CC-CCCeEEEEeECCCC------CCccCcCHHHHHHHHHHHHHhCC------CEEEE
Confidence 467999999999999999998 33 47888999999754 23334443211001233456774 79999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|++++ .++|+||+.||.++|++|++
T Consensus 467 G~~~~---g~~v~gai~sG~~aA~~il~ 491 (504)
T 1sez_A 467 GNHRG---GLSVGKALSSGCNAADLVIS 491 (504)
T ss_dssp CSSSS---CSSHHHHHHHHHHHHHHHHH
T ss_pred eecCC---CCCHHHHHHHHHHHHHHHHH
Confidence 99986 36899999999999999974
No 15
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=99.11 E-value=3.6e-11 Score=89.85 Aligned_cols=90 Identities=16% Similarity=0.144 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccc-cccHHHhcCccCCCCCCCcEEE
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERL-NTSAAELGAPVSNGMGKPVLLF 80 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~-~~~~~~l~~p~~~~~~~~rl~F 80 (110)
..++++++++.++++|+++|| .. ..|....+++|... +..+.+|.... ....+.+.+|+. +|||
T Consensus 373 ~~~~~e~~~~~~~~~L~~~~g--~~-~~p~~~~v~~w~~a------~p~~~~g~~~~~~~~~~~l~~~~~------~l~~ 437 (475)
T 3lov_A 373 VHESDEVLQQAVLQDLEKICG--RT-LEPKQVIISRLMDG------LPAYTVGHADRIQRVREEVLAQYP------GIYL 437 (475)
T ss_dssp GGSCHHHHHHHHHHHHHHHHS--SC-CCCSEEEEEEEEEE------EECCCTTHHHHHHHHHHHHHHHST------TEEE
T ss_pred cCCCHHHHHHHHHHHHHHHhC--CC-CCCeEEEEEEcccC------CCCCCCChHHHHHHHHHHHHhhCC------CEEE
Confidence 357999999999999999998 33 48899999999886 11224443211 012344666774 7999
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 81 AGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 81 AGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
||+++.. ..|+||+.||+++|++|++
T Consensus 438 aG~~~~g---~g~~~a~~sG~~aA~~i~~ 463 (475)
T 3lov_A 438 AGLAYDG---VGLPDCVASAKTMIESIEL 463 (475)
T ss_dssp CSTTTSC---SSHHHHHHHHHHHHHHHHH
T ss_pred EccCCCC---CCHHHHHHHHHHHHHHHHH
Confidence 9998863 4599999999999999975
No 16
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=99.03 E-value=1.3e-10 Score=86.11 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCccccc-ccHHHhcCccCCCCCCCcEEE
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLN-TSAAELGAPVSNGMGKPVLLF 80 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~-~~~~~l~~p~~~~~~~~rl~F 80 (110)
+.++++++++.+++.|+++|| . .+.|..+.+++|... +..+.+|....- ...+.+.+|.+ +|+|
T Consensus 376 ~~~~~~~~~~~~~~~l~~~~g--~-~~~p~~~~~~~w~~a------~p~~~~g~~~~~~~~~~~l~~~~~------~l~~ 440 (470)
T 3i6d_A 376 VDLSDNDIINIVLEDLKKVMN--I-NGEPEMTCVTRWHES------MPQYHVGHKQRIKELREALASAYP------GVYM 440 (470)
T ss_dssp GTSCHHHHHHHHHHHHGGGSC--C-CSCCSEEEEEEEEEE------EEECBTTHHHHHHHHHHHHHHHST------TEEE
T ss_pred cCCCHHHHHHHHHHHHHHHhC--C-CCCceEEEEEEcCCc------cCCCCCCHHHHHHHHHHHHHhhCC------CEEE
Confidence 468999999999999999998 3 358899999999653 223345432110 12334667774 7999
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 81 AGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 81 AGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
||+++.. ..|+||+.||.++|++|++
T Consensus 441 aG~~~~g---~gv~~a~~sG~~aA~~i~~ 466 (470)
T 3i6d_A 441 TGASFEG---VGIPDCIDQGKAAVSDALT 466 (470)
T ss_dssp CSTTTSC---CSHHHHHHHHHHHHHHHHH
T ss_pred EeecCCC---CCHHHHHHHHHHHHHHHHH
Confidence 9998853 3499999999999999874
No 17
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=98.96 E-value=1.3e-09 Score=81.36 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcc
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAG 82 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAG 82 (110)
.++++++.+.+++.|.++|| .. ..|....+++|.. ++..+.++... ....+..++.. .++|||||
T Consensus 383 ~~~~~~~~~~~~~~l~~~~~--~~-~~p~~~~~~~w~~------~~p~~~~g~~~---~~~~~~~~~~~---~~~l~~aG 447 (478)
T 2ivd_A 383 EQDEDALAALAREELKALAG--VT-ARPSFTRVFRWPL------GIPQYNLGHLE---RVAAIDAALQR---LPGLHLIG 447 (478)
T ss_dssp GSCHHHHHHHHHHHHHHHHC--CC-SCCSEEEEEEESS------CCBCCBTTHHH---HHHHHHHHHHT---STTEEECS
T ss_pred CCCHHHHHHHHHHHHHHHhC--CC-CCCcEEEEEECCC------cccCCCcCHHH---HHHHHHHHHhh---CCCEEEEc
Confidence 47899999999999999998 33 4788888899965 34445666532 12223222210 14899999
Q ss_pred cccccccccchhHHHHHHHHHHHHHHc
Q psy7655 83 EATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 83 e~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+++. . +.|+||+.||.++|++|+.
T Consensus 448 ~~~~--g-~gv~gA~~SG~~aA~~i~~ 471 (478)
T 2ivd_A 448 NAYK--G-VGLNDCIRNAAQLADALVA 471 (478)
T ss_dssp TTTS--C-CSHHHHHHHHHHHHHHHCC
T ss_pred cCCC--C-CCHHHHHHHHHHHHHHHHH
Confidence 9983 2 3599999999999999864
No 18
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.93 E-value=2.6e-09 Score=76.80 Aligned_cols=85 Identities=14% Similarity=0.259 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhc-CccCCCCCCCcEEE
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELG-APVSNGMGKPVLLF 80 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~-~p~~~~~~~~rl~F 80 (110)
..++++++++.+++.|+++|| ..++|+.+.+++|.. +.-.|. ... ....+. .+. ++|++
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~g---~~~~p~~~~v~rW~~---a~p~~~-----~~~---~~~~~~~~~~------~~l~l 314 (342)
T 3qj4_A 255 LEHSIEDVQELVFQQLENILP---GLPQPIATKCQKWRH---SQVTNA-----AAN---CPGQMTLHHK------PFLAC 314 (342)
T ss_dssp TTSCHHHHHHHHHHHHHHHSC---SCCCCSEEEEEEETT---CSBSSC-----CSS---SCSCEEEETT------TEEEE
T ss_pred hcCCHHHHHHHHHHHHHHhcc---CCCCCceeeeccccc---cccccc-----cCC---CcceeEecCC------ccEEE
Confidence 357999999999999999998 456899999999972 221221 100 011122 222 48999
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 81 AGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 81 AGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
||+.+.. ++|+||+.||.++|++|++
T Consensus 315 aGd~~~g---~~v~~ai~sg~~aa~~i~~ 340 (342)
T 3qj4_A 315 GGDGFTQ---SNFDGCITSALCVLEALKN 340 (342)
T ss_dssp CSGGGSC---SSHHHHHHHHHHHHHHHTT
T ss_pred EccccCC---CCccHHHHHHHHHHHHHHh
Confidence 9999964 7999999999999999975
No 19
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.64 E-value=6.6e-08 Score=68.72 Aligned_cols=84 Identities=23% Similarity=0.249 Sum_probs=63.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
..++++++.+.+++.|.++|| ...+.|.....++|. |....|.. +. ..+..+. +||+||
T Consensus 242 ~~~~~~~~~~~l~~~l~~~lg--~~~~~p~~~~~~rw~---~a~~~~~~---~~-------~~~~~~~------~rl~la 300 (336)
T 1yvv_A 242 LDASREQVIEHLHGAFAELID--CTMPAPVFSLAHRWL---YARPAGAH---EW-------GALSDAD------LGIYVC 300 (336)
T ss_dssp TTSCHHHHHHHHHHHHHTTCS--SCCCCCSEEEEEEEE---EEEESSCC---CC-------SCEEETT------TTEEEC
T ss_pred HhCCHHHHHHHHHHHHHHHhC--CCCCCCcEEEccccC---ccCCCCCC---CC-------CeeecCC------CCEEEE
Confidence 468999999999999999998 466678888899997 33222321 11 1122233 499999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
|++++. ++|++|+.||.++|+.|++
T Consensus 301 GDa~~g---~gv~~a~~sg~~lA~~l~~ 325 (336)
T 1yvv_A 301 GDWCLS---GRVEGAWLSGQEAARRLLE 325 (336)
T ss_dssp CGGGTT---SSHHHHHHHHHHHHHHHHH
T ss_pred ecCCCC---CCHHHHHHHHHHHHHHHHH
Confidence 999965 7999999999999999864
No 20
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=98.52 E-value=1.9e-07 Score=69.48 Aligned_cols=90 Identities=21% Similarity=0.176 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcc
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAG 82 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAG 82 (110)
.++++++++.+++.|+++|| . .+.|..+.+++|.. ++..+.+|.... ...+.+.+.. ..++|+|||
T Consensus 383 ~~~~~~~~~~~~~~L~~~~g--~-~~~~~~~~v~rw~~------a~p~~~~g~~~~---~~~~~~~l~~--~~~~l~l~G 448 (477)
T 3nks_A 383 VLSQELFQQRAQEAAATQLG--L-KEMPSHCLVHLHKN------CIPQYTLGHWQK---LESARQFLTA--HRLPLTLAG 448 (477)
T ss_dssp CCCHHHHHHHHHHHHHHHHC--C-CSCCSEEEEEEEEE------EEECCBTTHHHH---HHHHHHHHHH--TTCSEEECS
T ss_pred CCCHHHHHHHHHHHHHHHhC--C-CCCCcEEEEEEcCC------ccCCCCCCHHHH---HHHHHHHHHh--cCCCEEEEc
Confidence 46999999999999999998 3 35788888888865 454556654321 2222222210 003799999
Q ss_pred cccccccccchhHHHHHHHHHHHHHHc
Q psy7655 83 EATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 83 e~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.+.. ..|++|+.||.++|++|+.
T Consensus 449 ~~~~G---~gv~~a~~sg~~aA~~il~ 472 (477)
T 3nks_A 449 ASYEG---VAVNDCIESGRQAAVSVLG 472 (477)
T ss_dssp TTTSC---CSHHHHHHHHHHHHHHHHH
T ss_pred cCCCC---CcHHHHHHHHHHHHHHHHh
Confidence 98743 3599999999999999975
No 21
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=98.35 E-value=2.6e-07 Score=69.14 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcc
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAG 82 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAG 82 (110)
.++|+++++.+++.|.++.+. ...+.++...+.+|.. +|..+.++... ....+..-+.. .+|+|+|
T Consensus 384 ~~~de~l~~~~~~~L~~~~~i-~~~~~i~~~~v~r~~~------ayP~y~~~~~~---~~~~~~~~l~~----~~l~~~G 449 (513)
T 4gde_A 384 PVNQETILADCIQGLVNTEML-KPTDEIVSTYHRRFDH------GYPTPTLEREG---TLTQILPKLQD----KDIWSRG 449 (513)
T ss_dssp CCCTTTHHHHHHHHHHHTTSS-CTTCEEEEEEEEEEEE------EEECCBTTHHH---HHHHHHHHHHH----TTEEECS
T ss_pred CCCHHHHHHHHHHHHHHhcCC-CCccceEEEEEEECCC------eecccCHhHHH---HHHHHHHHHhh----cCcEEec
Confidence 579999999999999999972 3455678888888843 34444444322 12223222221 2699999
Q ss_pred cccccccc-cchhHHHHHHHHHHHHHHcC
Q psy7655 83 EATSEDQY-ATVNGAIETGWREADRILKG 110 (110)
Q Consensus 83 e~ts~~~~-g~~~GA~~SG~raA~~i~~~ 110 (110)
-.-.-.+. +.|++|+.||..||+.|+.|
T Consensus 450 R~g~~~Y~~~n~D~a~~~g~~aa~~I~~g 478 (513)
T 4gde_A 450 RFGSWRYEVGNQDHSFMLGVEAVDNIVNG 478 (513)
T ss_dssp TTTTCCGGGCSHHHHHHHHHHHHHHHHHC
T ss_pred CCcccCcCCCCHHHHHHHHHHHHHHHHcC
Confidence 55444443 68999999999999999875
No 22
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=98.31 E-value=8.3e-07 Score=65.06 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcccccc
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAGEATS 86 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAGe~ts 86 (110)
++.++.++++|+++|| + ..++++ .++.|.. +...+.++.. ....-..|+. +||+||+++.
T Consensus 343 ~~~~~~~~~~l~~~~p-~-~~~~~~--~v~~~~~------~~P~~~~~~~----~~~~~~~p~~------gL~laG~~~~ 402 (425)
T 3ka7_A 343 ESEIEMGLEDLKEIFP-G-KRYEVL--LIQSYHD------EWPVNRAASG----TDPGNETPFS------GLYVVGDGAK 402 (425)
T ss_dssp HHHHHHHHHHHHHHST-T-CCEEEE--EEEEEBT------TBCSBSSCTT----CCCCSBCSSB------TEEECSTTSC
T ss_pred HHHHHHHHHHHHHhCC-C-CceEEE--EEEEECC------CccccccccC----CCCCCCCCcC------CeEEeCCccC
Confidence 4557999999999998 2 333444 5667765 2333344422 2233455664 7999999999
Q ss_pred cccccchhHHHHHHHHHHHHHH
Q psy7655 87 EDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 87 ~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..+.-.|+|++.||.++|++|+
T Consensus 403 ~~gg~gv~~~~~s~~~~~~~i~ 424 (425)
T 3ka7_A 403 GKGGIEVEGVALGVMSVMEKVL 424 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHC--
T ss_pred CCCCCccHHHHHHHHHHHHHhh
Confidence 9888899999999999999986
No 23
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=98.24 E-value=9.7e-07 Score=64.83 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcc
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAG 82 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAG 82 (110)
.++++++++.+++.|.+ ++ ...+.+ +...+|...|. +.+.+... -....+.... +.++|||||
T Consensus 338 ~~~~~~~~~~v~~~l~~-l~--~~~~~~--~~~~~w~~~p~-------~~~~~~~~-G~~~~~~~~~----~~~~l~~aG 400 (424)
T 2b9w_A 338 DKTQEECRQMVLDDMET-FG--HPVEKI--IEEQTWYYFPH-------VSSEDYKA-GWYEKVEGMQ----GRRNTFYAG 400 (424)
T ss_dssp CCCHHHHHHHHHHHHHH-TT--CCEEEE--EEEEEEEEEEE-------CCHHHHHT-THHHHHHHTT----TGGGEEECS
T ss_pred ccChHHHHHHHHHHHHH-cC--Cccccc--ccccceeeeec-------cCHHHHhc-cHHHHHHHHh----CCCCceEec
Confidence 46899999999999998 65 233222 23346754332 11111000 0012222211 114899999
Q ss_pred cccccccccchhHHHHHHHHHHHHHH
Q psy7655 83 EATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 83 e~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+++. +|++|+|+.||.++|++|+
T Consensus 401 ~~~~---~g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 401 EIMS---FGNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp GGGS---CSSHHHHHHHHHHHHHHHT
T ss_pred cccc---cccHHHHHHHHHHHHHHhc
Confidence 9886 4899999999999999986
No 24
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=97.90 E-value=3e-05 Score=56.93 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCC--CCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 4 LTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIR--TLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 4 ls~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~--~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
.++++.++.++++|.++|| . . +++ .+.+|.. ++..+ .++. ..+ ..| ++||+|
T Consensus 324 ~~~~~~~~~~~~~L~~~~p-~--~-~~~--~~~~~~~------~~p~~~~~~~~-----~~~--~~~-------~gl~la 377 (421)
T 3nrn_A 324 GNVKKAIEKGWEELLEIFP-E--G-EPL--LAQVYRD------GNPVNRTRAGL-----HIE--WPL-------NEVLVV 377 (421)
T ss_dssp CCHHHHHHHHHHHHHHHCT-T--C-EEE--EEEEC------------------------CCC--CCC-------SSEEEC
T ss_pred ccHHHHHHHHHHHHHHHcC-C--C-eEE--EeeeccC------CCCcccccCCC-----CCC--CCC-------CcEEEE
Confidence 3445679999999999998 1 1 333 4455643 11111 1111 111 223 379999
Q ss_pred ccccccccccchhHHHHHHHHHHHHH
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRI 107 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i 107 (110)
|+++...+.-+|+||+.||.+||+.|
T Consensus 378 Gd~~~~~~g~~~~ga~~sg~~aA~~l 403 (421)
T 3nrn_A 378 GDGYRPPGGIEVDGIALGVMKALEKL 403 (421)
T ss_dssp STTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred CCcccCCCceeeehHHHHHHHHHHHh
Confidence 99998643346799999999999987
No 25
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=97.85 E-value=3e-05 Score=51.25 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEcccc
Q psy7655 5 TDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAGEA 84 (110)
Q Consensus 5 s~e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FAGe~ 84 (110)
...+..+.....+...++ ...+.+.....++|. |++... ... ...+..+. +||++||++
T Consensus 245 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~w~---~a~~~~---~~~-------~~~~~~~~------~~v~l~GDa 303 (336)
T 3kkj_A 245 SREQVIEHLHGAFAELID--CTMPAPVFSLAHRWL---YARPAG---AHE-------WGALSDAD------LGIYVCGDW 303 (336)
T ss_dssp CHHHHHHHHHHHHHTTCS--SCCCCCSEEEEEEEE---EEEESS---CCC-------CSSEEETT------TTEEECCGG
T ss_pred cchhhhhhhhhhhhhhcc--CCcCcchheecccee---eccccc---ccC-------ccceeeCC------CCEEEEecc
Confidence 455666677777777776 466778888888883 221111 110 01111222 489999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHc
Q psy7655 85 TSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 85 ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.. +.|++|+.||.++|+.|++
T Consensus 304 ~~g---~gv~~A~~sG~~aA~~I~~ 325 (336)
T 3kkj_A 304 CLS---GRVEGAWLSGQEAARRLLE 325 (336)
T ss_dssp GTT---SSHHHHHHHHHHHHHHHHH
T ss_pred cCC---cCHHHHHHHHHHHHHHHHH
Confidence 764 5699999999999999974
No 26
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=97.43 E-value=0.00022 Score=53.24 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=25.3
Q ss_pred cCccCCCCCCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..|+. +|||||..|.+. +.|.||+.||..+|+.|++
T Consensus 454 ~t~i~------gLyl~G~~t~pG--~Gv~ga~~SG~~aA~~il~ 489 (501)
T 4dgk_A 454 DKTIT------NLYLVGAGTHPG--AGIPGVIGSAKATAGLMLE 489 (501)
T ss_dssp --CCT------TEEECCCH--------HHHHHHHHHHHHHHHHH
T ss_pred CCCCC------CEEEECCCCCCc--ccHHHHHHHHHHHHHHHHH
Confidence 45674 799999988652 5799999999999999875
No 27
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=96.67 E-value=0.0013 Score=49.67 Aligned_cols=93 Identities=5% Similarity=-0.023 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCcc-ceeeccccCCCCCCCcccCCCCCCcccccccHHHhcCccCCCCCCCcEEEc
Q psy7655 3 SLTDKQVQIEVMKAFRFFLGAKYTIPEP-ARILTTSWGSNKHFRGSYSIRTLTTERLNTSAAELGAPVSNGMGKPVLLFA 81 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg~~~~~~~~-~~~~~~~W~~dp~~~G~ys~~~~g~~~~~~~~~~l~~p~~~~~~~~rl~FA 81 (110)
.++|+++++.+++.|.++.+ .....+ ....+++|. .+|..+.++... ....+.+-+.. . +|+|+
T Consensus 360 ~~~d~~l~~~a~~~L~~~~~--~~~~~~~~~~~v~r~~------~~yP~y~~~~~~---~~~~~~~~l~~---~-~l~~~ 424 (484)
T 4dsg_A 360 PVNHSTLIEDCIVGCLASNL--LLPEDLLVSKWHYRIE------KGYPTPFIGRNN---LLEKAQPELMS---R-CIYSR 424 (484)
T ss_dssp CCCTTSHHHHHHHHHHHTTS--CCTTCCEEEEEEEEEE------EEEECCBTTHHH---HHHHHHHHHHH---T-TEEEC
T ss_pred cCCHHHHHHHHHHHHHHcCC--CCccceEEEEEEEEeC------ccccCCCccHHH---HHHHHHHHHHh---C-CcEee
Confidence 47899999999999999975 222223 334455552 455555665432 22333333321 1 59999
Q ss_pred ccccccccc-cchhHHHHHHHHHHHHHH-cC
Q psy7655 82 GEATSEDQY-ATVNGAIETGWREADRIL-KG 110 (110)
Q Consensus 82 Ge~ts~~~~-g~~~GA~~SG~raA~~i~-~~ 110 (110)
|-...-.+. ..|+.++.||.++|++|+ .|
T Consensus 425 Gr~g~~~y~v~~~d~~i~sg~~aa~~i~~~g 455 (484)
T 4dsg_A 425 GRFGAWRYEVGNQDHSFMQGVEAIDHVLGLA 455 (484)
T ss_dssp STTTTCCGGGCSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCcccccCCCChHHHHHHHHHHHHHHHhcC
Confidence 986655332 469999999999999998 43
No 28
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=95.89 E-value=0.0026 Score=46.74 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=28.3
Q ss_pred cEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 77 VLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 77 rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+|+|||.+.+.. +++|++++.||+++|++|++
T Consensus 354 ~v~~~G~~~~~~-~~~~e~~i~sa~~~a~~l~~ 385 (399)
T 1v0j_A 354 KVLFGGRLGTYQ-YLDMHMAIASALNMYDNVLA 385 (399)
T ss_dssp CEEECHHHHHTC-CCCHHHHHHHHHHHHHHTHH
T ss_pred CEEEccceEEEE-ecCHHHHHHHHHHHHHHHhh
Confidence 799999998874 48999999999999999863
No 29
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=90.22 E-value=0.099 Score=36.89 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=25.9
Q ss_pred CCcEEEccccccccc----cc-chhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSEDQ----YA-TVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~----~g-~~~GA~~SG~raA~~i~~ 109 (110)
.+.||.||++...-. .| +.-|++.||++||+.|++
T Consensus 283 vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~ 322 (326)
T 3fpz_A 283 VDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322 (326)
T ss_dssp SBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 357999999875322 13 455678999999999975
No 30
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=87.98 E-value=0.65 Score=33.46 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=27.9
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
++|+|+|-..+.. ++.|+.++.||+++|++|++
T Consensus 333 ~~~~~~Gr~~~~~-y~~~~d~i~sa~~~a~~~~~ 365 (367)
T 1i8t_A 333 DKVIFGGRLAEYK-YYDMHQVISAALYQVKNIMS 365 (367)
T ss_dssp TTEEECSTTTTTS-CCCHHHHHHHHHHHHHHHHS
T ss_pred CCEEEcccceeeE-ecCHHHHHHHHHHHHHHHhc
Confidence 4799999876553 37899999999999999975
No 31
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=86.83 E-value=0.44 Score=34.64 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=27.7
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
++|+|+|-..... ++.|+.++.||.++|++|+.
T Consensus 336 ~~~~~~Gr~~~~~-~~~~~d~i~sa~~~a~~~~~ 368 (384)
T 2bi7_A 336 TNITFVGRLGTYR-YLDMDVTIAEALKTAEVYLN 368 (384)
T ss_dssp SSEEECHHHHTTC-CCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEccccEEEE-eCCHHHHHHHHHHHHHHHhh
Confidence 3799999876653 37899999999999999864
No 32
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=86.00 E-value=0.84 Score=31.64 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=27.3
Q ss_pred CCcEEEcc--cccccccccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAG--EATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAG--e~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
.++||.+| +.+. ..+.++.+|...|..+|..|.+
T Consensus 314 ~~~vya~Gd~d~~~-~~~~~~~~A~~~g~~~a~~i~~ 349 (357)
T 4a9w_A 314 VPSVWLLGYGDWNG-MASATLIGVTRYAREAVRQVTA 349 (357)
T ss_dssp CTTEEECSSCGGGS-TTCSSTTTHHHHHHHHHHHHHH
T ss_pred CCCeEEeccccccc-cchhhhhhhHHHHHHHHHHHHH
Confidence 36899999 5554 3568899999999999998863
No 33
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=85.40 E-value=0.94 Score=30.28 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=28.5
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..+.||-+|+.. ..|+...|+++|+.+|+.|++
T Consensus 197 ~~p~iya~G~~a---~~g~~~~~~~~g~~~a~~i~~ 229 (232)
T 2cul_A 197 RLEGLYAVGLCV---REGDYARMSEEGKRLAEHLLH 229 (232)
T ss_dssp TSBSEEECGGGT---SCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeeecc---cCccHHHHHHHHHHHHHHHHh
Confidence 457899999998 467888999999999999864
No 34
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=85.05 E-value=0.84 Score=33.65 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=24.0
Q ss_pred CcEEEccccccccc-c-c-chhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQ-Y-A-TVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~-~-g-~~~GA~~SG~raA~~i~ 108 (110)
+.||||||-+.... . | .+.-|+.+|..|++.+.
T Consensus 405 ~GLy~aGEv~~v~g~~GG~~l~~a~~~G~~Ag~~aa 440 (447)
T 2i0z_A 405 NGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAG 440 (447)
T ss_dssp BTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeeccCccCCCcHHHHHHHHHHHHHHHHHH
Confidence 37999999998431 1 1 34569999999988764
No 35
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=84.39 E-value=1.1 Score=32.71 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=26.6
Q ss_pred CcEEEccccccccc-c-c-chhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQ-Y-A-TVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~-~-g-~~~GA~~SG~raA~~i~~ 109 (110)
+.||||||-...+. . | -++.|+.||..|++.+.+
T Consensus 364 ~gly~~GE~ldv~g~~GGynlq~a~~sg~~ag~~~~~ 400 (401)
T 2gqf_A 364 SGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 400 (401)
T ss_dssp TTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeEEeccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 57999999998642 2 3 358899999999988754
No 36
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=83.71 E-value=1.5 Score=29.55 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=28.0
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+.+.. +..++-|+..|..+|..|.
T Consensus 256 ~~~~vya~GD~~~~--~~~~~~A~~~g~~aa~~i~ 288 (297)
T 3fbs_A 256 TARGIFACGDVARP--AGSVALAVGDGAMAGAAAH 288 (297)
T ss_dssp SSTTEEECSGGGCT--TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeecCCc--hHHHHHHHHhHHHHHHHHH
Confidence 33689999998874 6889999999999998875
No 37
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=80.42 E-value=1.2 Score=32.74 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=24.2
Q ss_pred CcEEEccccccccc-c-c-chhHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQ-Y-A-TVNGAIETGWREADR 106 (110)
Q Consensus 76 ~rl~FAGe~ts~~~-~-g-~~~GA~~SG~raA~~ 106 (110)
+.||||||-...+. . | -++-|+.||..|++.
T Consensus 383 ~gLy~aGE~lD~~~~~GGynlq~a~stG~~ag~~ 416 (417)
T 3v76_A 383 PGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQD 416 (417)
T ss_dssp TTEEECGGGBSEEECSSSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeEecccCCCCHHHHHHHHHHHHHhCc
Confidence 57999999988752 2 3 468999999987764
No 38
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=80.27 E-value=2.4 Score=29.11 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=28.1
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
.++||.+|+.+.. .+..+.-|+..|..||..|++
T Consensus 299 ~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~ 332 (338)
T 3itj_A 299 VPGFFAAGDVQDS-KYRQAITSAGSGCMAALDAEK 332 (338)
T ss_dssp STTEEECGGGGCS-SCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeccCCC-CccceeeehhhhHHHHHHHHH
Confidence 3689999999874 457889999999999988753
No 39
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=78.35 E-value=3.2 Score=28.22 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCCcEEEcccccccc-cccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSED-QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~-~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.+... .+..+..|+..|..+|..|++
T Consensus 278 ~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 314 (323)
T 3f8d_A 278 SVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYR 314 (323)
T ss_dssp SSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHH
Confidence 346899999988742 357899999999999988753
No 40
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=77.97 E-value=3.2 Score=28.18 Aligned_cols=34 Identities=21% Similarity=0.087 Sum_probs=28.3
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
.++||.+|+.+.. .+..+.-|+..|..+|..|.+
T Consensus 276 ~~~v~a~GD~~~~-~~~~~~~A~~~g~~aa~~i~~ 309 (315)
T 3r9u_A 276 VAGLFAAGDLRKD-APKQVICAAGDGAVAALSAMA 309 (315)
T ss_dssp STTEEECGGGBTT-CCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCC-chhhhhhHHhhHHHHHHHHHH
Confidence 4689999998754 467899999999999998763
No 41
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=74.73 E-value=4.5 Score=27.73 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=26.1
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.+.||-+|+-+.. .+..++-|+..|..||..|.
T Consensus 270 ~pgIyA~GDv~~~-~~~~~~~A~~~G~~AA~~i~ 302 (312)
T 4gcm_A 270 VPGIFAAGDVRDK-GLRQIVTATGDGSIAAQSAA 302 (312)
T ss_dssp STTEEECSTTBSC-SCCSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCC-cchHHHHHHHHHHHHHHHHH
Confidence 3679999997754 34567889999999998874
No 42
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=74.63 E-value=4.4 Score=27.80 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=27.7
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+.+.. .+..++-|+..|..+|..|.
T Consensus 279 ~~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~ 312 (319)
T 3cty_A 279 SVPGVYAAGDVTSG-NFAQIASAVGDGCKAALSLY 312 (319)
T ss_dssp SSTTEEECSTTBTT-CCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCc-chhhHHHHHHHHHHHHHHHH
Confidence 34689999999875 34678889999999998875
No 43
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=73.13 E-value=4.5 Score=27.89 Aligned_cols=34 Identities=9% Similarity=0.043 Sum_probs=27.5
Q ss_pred CCcEEEcccccccc-cccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSED-QYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~-~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+.+... .+..++.|+..|..+|..|+
T Consensus 279 ~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~ 313 (335)
T 2zbw_A 279 IPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAA 313 (335)
T ss_dssp STTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccccccCcchhhhhhhHHHHHHHHHHHH
Confidence 46899999987642 35788999999999998875
No 44
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=72.95 E-value=5.1 Score=27.33 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=27.3
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+.+... +..+.-|+..|..+|..|.
T Consensus 277 ~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~ 310 (320)
T 1trb_A 277 SIPGVFAAGDVMDHI-YRQAITSAGTGCMAALDAE 310 (320)
T ss_dssp SSTTEEECGGGGCSS-SCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEcccccCCc-chhhhhhhccHHHHHHHHH
Confidence 346899999988752 4567889999999998875
No 45
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=72.90 E-value=5.2 Score=27.22 Aligned_cols=33 Identities=21% Similarity=0.080 Sum_probs=27.6
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+.+.. .+..++-|+..|..+|..|.
T Consensus 273 ~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~ 305 (311)
T 2q0l_A 273 VQGLFAAGDIRIF-APKQVVCAASDGATAALSVI 305 (311)
T ss_dssp STTEEECSTTBTT-CCCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEcccccCc-chHHHHHHHHhHHHHHHHHH
Confidence 4689999999874 35778999999999998875
No 46
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=72.21 E-value=5.7 Score=27.03 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=27.2
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
.++||.+|+.+... ...+.-|+..|..+|..|..
T Consensus 269 ~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~ 302 (310)
T 1fl2_A 269 VKGVFAAGDCTTVP-YKQIIIATGEGAKASLSAFD 302 (310)
T ss_dssp STTEEECSTTBSCS-SCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCCc-chhhhhhHhhHHHHHHHHHH
Confidence 46899999988752 35778899999999988753
No 47
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=71.95 E-value=4.9 Score=27.42 Aligned_cols=36 Identities=6% Similarity=0.027 Sum_probs=28.8
Q ss_pred CCCcEEEccccccc-ccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSE-DQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~-~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||-+|+.+.. ..+..+..|+..|..+|..|+.
T Consensus 276 ~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 312 (332)
T 3lzw_A 276 NIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKA 312 (332)
T ss_dssp SSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHH
Confidence 34689999998864 2467889999999999988753
No 48
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=71.74 E-value=5.6 Score=27.37 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=27.3
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+.+... +....-|+..|..+|..|.
T Consensus 286 ~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~ 319 (333)
T 1vdc_A 286 SVPGVFAAGDVQDKK-YRQAITAAGTGCMAALDAE 319 (333)
T ss_dssp SSTTEEECGGGGCSS-CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeeeccCCC-chhHHHHHHhHHHHHHHHH
Confidence 346899999988752 4677889999999998875
No 49
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=70.18 E-value=3.6 Score=28.75 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=25.2
Q ss_pred CcEEEccccccccccc---chhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYA---TVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g---~~~GA~~SG~raA~~i~ 108 (110)
+|++++|++.+.-.+- -|.=|+++|..+|+.|.
T Consensus 277 ~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~ 312 (397)
T 3oz2_A 277 PGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTK 312 (397)
T ss_dssp TTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHH
T ss_pred eeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHH
Confidence 5899999997765433 35568999999988775
No 50
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=69.75 E-value=6.6 Score=26.99 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=27.2
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+.+.. .+..++-|+..|..+|..|.
T Consensus 276 ~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~ 308 (325)
T 2q7v_A 276 IPMLFAAGDVSDY-IYRQLATSVGAGTRAAMMTE 308 (325)
T ss_dssp STTEEECSTTTCS-SCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCc-cHHHHHHHHHHHHHHHHHHH
Confidence 4689999998864 25678889999999998875
No 51
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=69.66 E-value=6.5 Score=27.23 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=26.6
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+.+.. .+....-|+..|..+|..|.
T Consensus 280 ~~~iya~GD~~~~-~~~~~~~A~~~g~~aA~~i~ 312 (335)
T 2a87_A 280 LPGVFAAGDLVDR-TYRQAVTAAGSGCAAAIDAE 312 (335)
T ss_dssp STTEEECGGGTCC-SCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeecCCc-cHHHHHHHHHhHHHHHHHHH
Confidence 4689999999875 24667889999999998775
No 52
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=66.28 E-value=7.8 Score=27.78 Aligned_cols=35 Identities=20% Similarity=0.046 Sum_probs=29.3
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.++||.+|+.++...+...+-|...|..+|..|.
T Consensus 298 ~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~ 332 (409)
T 3h8l_A 298 KYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLA 332 (409)
T ss_dssp SCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 34689999999986566788899999999998875
No 53
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=65.60 E-value=7.9 Score=27.04 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=27.3
Q ss_pred CCcEEEcccccccc-cccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSED-QYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~-~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+.+... .+..+..|+..|..+|..|+
T Consensus 290 ~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~ 324 (360)
T 3ab1_A 290 VDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSL 324 (360)
T ss_dssp STTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCccCCCCccceeehhHHHHHHHHHHHH
Confidence 36899999987642 35678889999999998875
No 54
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=59.96 E-value=8.2 Score=27.68 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=25.2
Q ss_pred CcEEEccccccccc----cc-chhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQ----YA-TVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~----~g-~~~GA~~SG~raA~~i~~ 109 (110)
+.|+++|-+.+.-+ .| +.=|.+.||+++|+.|++
T Consensus 284 ~~~~~~g~~~~~~~~~~r~g~~fg~m~~sg~~~a~~~~~ 322 (326)
T 2gjc_A 284 DNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322 (326)
T ss_dssp TTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEECChHHHHhcCCCCCChhhhhhhhhhHHHHHHHHH
Confidence 57999997765321 22 456778999999999975
No 55
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=59.46 E-value=14 Score=27.17 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=28.4
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.+.. +...+-|...|..+|..|+.
T Consensus 299 ~~~~Iya~GD~~~~--~~~~~~A~~~g~~aa~~i~~ 332 (466)
T 3l8k_A 299 NIPNVFATGDANGL--APYYHAAVRMSIAAANNIMA 332 (466)
T ss_dssp SSTTEEECGGGTCS--CCSHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEecCCC--CccHhHHHHHHHHHHHHHhC
Confidence 34689999998864 57788999999999999874
No 56
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=59.38 E-value=12 Score=27.74 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=27.5
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+.+.. +.++.-|+..|..+|..|.
T Consensus 408 s~~~VfA~GD~~~g--~~~v~~A~~~G~~aA~~i~ 440 (456)
T 2vdc_G 408 NMDGVFAAGDIVRG--ASLVVWAIRDGRDAAEGIH 440 (456)
T ss_dssp SSTTEEECGGGGSS--CCSHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeccccCC--chHHHHHHHHHHHHHHHHH
Confidence 34689999998753 5789999999999999875
No 57
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=59.24 E-value=14 Score=27.12 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=27.9
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.++||.+|+.+. .+...+-|...|..+|..|+.
T Consensus 322 ~~~~IyA~GD~~~--~~~~~~~A~~~g~~aa~~i~~ 355 (478)
T 3dk9_A 322 NVKGIYAVGDVCG--KALLTPVAIAAGRKLAHRLFE 355 (478)
T ss_dssp SSTTEEECGGGGC--SSCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEEecCC--CCccHhHHHHHHHHHHHHHcC
Confidence 3468999999883 457788999999999999864
No 58
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=58.77 E-value=15 Score=26.91 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=28.0
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.+. .+...+-|...|..+|..|+.
T Consensus 297 ~~~~iya~GD~~~--~~~~~~~A~~~g~~aa~~i~g 330 (463)
T 4dna_A 297 STPGIYALGDVTD--RVQLTPVAIHEAMCFIETEYK 330 (463)
T ss_dssp SSTTEEECSGGGS--SCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEEecCC--CCCChHHHHHHHHHHHHHHcC
Confidence 3468999999876 356788999999999999874
No 59
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=58.72 E-value=15 Score=24.92 Aligned_cols=33 Identities=15% Similarity=0.052 Sum_probs=23.9
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.+.||-||+-+... +-.+.=|+..|..||..|.
T Consensus 276 ~pgIyA~GDv~~~~-~~~~~~A~~~G~~AA~~~~ 308 (314)
T 4a5l_A 276 VDGVFACGDVCDRV-YRQAIVAAGSGCMAALSCE 308 (314)
T ss_dssp STTEEECSTTTCSS-CCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeccCCc-chHHHHHHHHHHHHHHHHH
Confidence 36799999987642 2245668888999988764
No 60
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=58.70 E-value=18 Score=22.51 Aligned_cols=34 Identities=18% Similarity=0.049 Sum_probs=26.8
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||-+|+-+... ....+-|...|..+|..|.
T Consensus 134 ~~~~i~a~GD~~~~~-~~~~~~A~~~g~~aa~~i~ 167 (180)
T 2ywl_A 134 SYPRVYAAGVARGKV-PGHAIISAGDGAYVAVHLV 167 (180)
T ss_dssp SSTTEEECGGGGTCC-SCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCcc-hhhHHHHHHhHHHHHHHHH
Confidence 346899999988753 2377889999999998875
No 61
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=58.70 E-value=11 Score=27.10 Aligned_cols=35 Identities=11% Similarity=-0.068 Sum_probs=28.6
Q ss_pred CCcEEEcccccccc--cccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSED--QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~--~~g~~~GA~~SG~raA~~i~~ 109 (110)
.++||.+|+-+... .++...-|...|..+|..|+.
T Consensus 257 ~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g 293 (385)
T 3klj_A 257 IKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACG 293 (385)
T ss_dssp STTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 36899999988743 257889999999999998863
No 62
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=56.83 E-value=15 Score=26.51 Aligned_cols=35 Identities=14% Similarity=-0.068 Sum_probs=28.5
Q ss_pred CCcEEEcccccccc----------cccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSED----------QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~----------~~g~~~GA~~SG~raA~~i~~ 109 (110)
.++||-+|+.+... .+-+.+-|...|..+|..|+.
T Consensus 286 ~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa~ni~~ 330 (430)
T 3h28_A 286 YKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVN 330 (430)
T ss_dssp STTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 46899999998754 245789999999999998863
No 63
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=56.46 E-value=5.8 Score=27.19 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=26.0
Q ss_pred CcEEEcccccccc-----cccchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSED-----QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~-----~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.||.+|..+... -..+..||+.||..+|..|++
T Consensus 234 p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~ 272 (284)
T 1rp0_A 234 PGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALK 272 (284)
T ss_dssp TTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHH
Confidence 5799999876432 123678999999999998864
No 64
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=55.05 E-value=11 Score=25.69 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=24.7
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.+.||-+|+-+... +..+.=|+..|..||..|.
T Consensus 263 s~p~IyA~GDv~~~~-~~~~~~A~~~G~~AA~~i~ 296 (304)
T 4fk1_A 263 SEKNIYLAGETTTQG-PSSLIIAASQGNKAAIAIN 296 (304)
T ss_dssp SSTTEEECSHHHHTS-CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccCCCc-chHHHHHHHHHHHHHHHHH
Confidence 346899999987642 3345568888999998774
No 65
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=54.86 E-value=19 Score=26.92 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=28.3
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.++||.+|+.+.. .+...+-|...|..+|+.|+.
T Consensus 345 s~~~IyA~GD~~~g-~~~~~~~A~~~g~~aa~~i~g 379 (519)
T 3qfa_A 345 NVPYIYAIGDILED-KVELTPVAIQAGRLLAQRLYA 379 (519)
T ss_dssp SSTTEEECGGGBSS-SCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEEeccCC-CCccHHHHHHHHHHHHHHHcC
Confidence 34689999998842 357889999999999999874
No 66
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=54.12 E-value=18 Score=26.66 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=27.9
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.+. .+...+-|+..|..+|..|+.
T Consensus 317 ~~~~Iya~GD~~~--~~~~~~~A~~~g~~aa~~i~~ 350 (484)
T 3o0h_A 317 NVSHIWAVGDVTG--HIQLTPVAIHDAMCFVKNAFE 350 (484)
T ss_dssp SSTTEEECGGGGT--SCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEecCC--CCcCHHHHHHHHHHHHHHHcC
Confidence 3468999999876 356788999999999998864
No 67
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=54.05 E-value=10 Score=21.90 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcc
Q psy7655 6 DKQVQIEVMKAFRFFLGAKYTIPEP 30 (110)
Q Consensus 6 ~e~~~~~~~~~L~~~fg~~~~~~~~ 30 (110)
++.++..|+++++.+.| ..+++.
T Consensus 30 d~arL~SCLd~iR~VlG--dsV~e~ 52 (83)
T 1ufz_A 30 DQARLYSCLDHMREVLG--DAVPDD 52 (83)
T ss_dssp HHHHHHHHHHHHHHHTT--TTSCHH
T ss_pred HHHHHHHHHHHHHHHHc--ccCCHH
Confidence 46788899999999999 456553
No 68
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=53.42 E-value=21 Score=26.22 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=28.1
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.+.. .+...+-|...|..+|..|+.
T Consensus 317 ~~~~IyA~GD~~~~-~~~~~~~A~~~g~~aa~~i~g 351 (483)
T 3dgh_A 317 NVANIYAVGDIIYG-KPELTPVAVLAGRLLARRLYG 351 (483)
T ss_dssp SSTTEEECSTTBTT-SCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEEcccCC-CCccHHHHHHHHHHHHHHHcC
Confidence 34689999998752 356788899999999999874
No 69
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=52.63 E-value=10 Score=29.90 Aligned_cols=30 Identities=27% Similarity=0.211 Sum_probs=20.2
Q ss_pred CcEEEcccccccccccchhHH---HHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGA---IETGWREADRI 107 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA---~~SG~raA~~i 107 (110)
++|||||+-+-+ .||.+.| +.+|+.||..+
T Consensus 390 ~gLf~AGqinGt--~GyeEAaaqGl~AG~nAa~~~ 422 (637)
T 2zxi_A 390 RGLFHAGNFNGT--TGYEEAAGQGIVAGINAALRA 422 (637)
T ss_dssp BTEEECGGGGTB--CSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeeecCCc--chHHHHHHHHHHHHHHHHHHh
Confidence 479999999987 4777755 33444555443
No 70
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=52.58 E-value=19 Score=26.17 Aligned_cols=34 Identities=15% Similarity=-0.129 Sum_probs=27.9
Q ss_pred CCcEEEcccccccc----------cccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSED----------QYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~----------~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+.+... .+-+.+-|...|..+|..|+
T Consensus 297 ~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~ 340 (437)
T 3sx6_A 297 YANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIK 340 (437)
T ss_dssp CTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 46899999998754 24578889999999999886
No 71
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=52.38 E-value=22 Score=26.20 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=28.0
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.+.. .+...+-|...|..+|..|+.
T Consensus 317 ~~~~IyA~GD~~~~-~~~~~~~A~~~g~~aa~~i~g 351 (488)
T 3dgz_A 317 SVPHIYAIGDVAEG-RPELTPTAIKAGKLLAQRLFG 351 (488)
T ss_dssp SSTTEEECGGGBTT-CCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEeEEecCC-CCcchhHHHHHHHHHHHHHcC
Confidence 34689999998752 356788899999999998864
No 72
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=50.26 E-value=14 Score=28.99 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=19.6
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADR 106 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~ 106 (110)
++|||||+-+... ||. -|+.+|..|+..
T Consensus 379 ~gLf~AGqi~g~~--Gy~-eA~a~G~~AG~n 406 (641)
T 3cp8_A 379 ENLFFAGQINGTS--GYE-EAAAQGLMAGIN 406 (641)
T ss_dssp BTEEECSGGGTBC--CHH-HHHHHHHHHHHH
T ss_pred CCEEEEEeecCCc--cHH-HHHHHHHHHHHH
Confidence 4799999999874 776 455566555443
No 73
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=49.74 E-value=26 Score=25.59 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=27.6
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+.. +...+-|...|..+|..|+.
T Consensus 294 ~~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~~ 327 (450)
T 1ges_A 294 NIEGIYAVGDNTGA--VELTPVAVAAGRRLSERLFN 327 (450)
T ss_dssp SSTTEEECSGGGTS--CCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeccCCC--CccHHHHHHHHHHHHHHHcC
Confidence 34689999998753 46788899999999998864
No 74
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=48.78 E-value=21 Score=25.42 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=28.0
Q ss_pred CCcEEEcccccccc--cccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSED--QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~--~~g~~~GA~~SG~raA~~i~~ 109 (110)
.++||.+|+-+... .++..+-|...|..+|..|+.
T Consensus 260 ~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g 296 (367)
T 1xhc_A 260 AKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG 296 (367)
T ss_dssp STTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcC
Confidence 46899999987642 246889999999999998863
No 75
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=48.44 E-value=27 Score=25.73 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=27.7
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+.. +...+-|...|..+|..|+.
T Consensus 313 ~~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~~ 346 (479)
T 2hqm_A 313 NVPNIYSLGDVVGK--VELTPVAIAAGRKLSNRLFG 346 (479)
T ss_dssp SSTTEEECGGGTTS--SCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEEecCCC--cccHHHHHHHHHHHHHHhcC
Confidence 34689999998643 56788999999999998864
No 76
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=47.56 E-value=26 Score=25.65 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=26.6
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+.+. .+...+-|...|..+|..|.
T Consensus 310 ~~~Iya~GD~~~--~~~~~~~A~~~g~~aa~~i~ 341 (476)
T 3lad_A 310 VPGVYAIGDVVR--GAMLAHKASEEGVVVAERIA 341 (476)
T ss_dssp STTEEECGGGSS--SCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEccCC--CcccHHHHHHHHHHHHHHhc
Confidence 368999999884 34578899999999999886
No 77
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=47.51 E-value=25 Score=25.71 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=28.1
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+.. .+...+-|...|..+|..|+.
T Consensus 305 ~~~~IyA~GD~~~~-~~~~~~~A~~~g~~aa~~i~~ 339 (468)
T 2qae_A 305 SIPDVYAIGDVVDK-GPMLAHKAEDEGVACAEILAG 339 (468)
T ss_dssp SSTTEEECGGGBSS-SCSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEeeccCCC-CCccHhHHHHHHHHHHHHHcC
Confidence 34689999998863 456788899999999998863
No 78
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=47.30 E-value=25 Score=24.94 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=26.5
Q ss_pred CCCcEEEcccccccc--cccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSED--QYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~--~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+-+... ....++-|...|..+|..|+
T Consensus 268 ~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~ 304 (384)
T 2v3a_A 268 SHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLA 304 (384)
T ss_dssp SSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhc
Confidence 346899999988632 23457778999999998876
No 79
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=47.17 E-value=26 Score=26.25 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=26.8
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+.+... +..+.-|+..|..||..|.
T Consensus 480 ~p~VfA~GD~~~~~-~~~~~~A~~~g~~aa~~i~ 512 (521)
T 1hyu_A 480 VKGVFAAGDCTTVP-YKQIIIATGEGAKASLSAF 512 (521)
T ss_dssp STTEEECSTTBCCS-SCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCCC-cceeeehHHhHHHHHHHHH
Confidence 36899999988753 3578889999999998775
No 80
>3a1g_A RNA-directed RNA polymerase catalytic subunit; influenza virus, RNA polymerase, nucleotide-binding, nucleotidyltransferase, nucleus, RNA replication; 1.70A {Influenza a virus} PDB: 2ztt_A
Probab=45.88 E-value=10 Score=21.51 Aligned_cols=28 Identities=21% Similarity=0.314 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCccce
Q psy7655 4 LTDKQVQIEVMKAFRFFLGAKYTIPEPAR 32 (110)
Q Consensus 4 ls~e~~~~~~~~~L~~~fg~~~~~~~~~~ 32 (110)
|-+|+.-+.|.+.+..+|+ ......|+.
T Consensus 6 l~eEq~Yqk~cnlfe~~F~-sasyr~PiG 33 (80)
T 3a1g_A 6 LEDEQMYQRCCNLFEKFFP-SSSYRRPVG 33 (80)
T ss_dssp --CCHHHHHHHHHHHHHSC-SSCCSCCCT
T ss_pred HHHHHHHHHHHHHHHHHcc-ccccCCCcc
Confidence 4578899999999999998 345545543
No 81
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=45.66 E-value=23 Score=25.43 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=27.6
Q ss_pred CCCcEEEcccccccccc---c------chhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQY---A------TVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~---g------~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+..... | +++-|...|..+|..|+.
T Consensus 276 ~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g 320 (415)
T 3lxd_A 276 SLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICG 320 (415)
T ss_dssp SSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcC
Confidence 34689999998876432 2 468899999999998863
No 82
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=45.21 E-value=29 Score=26.27 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=27.6
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.... .+..++-|+..|..+|..|+.
T Consensus 424 s~~~VyA~GD~~~~-~~~~~~~A~~~g~~aa~~i~~ 458 (598)
T 2x8g_A 424 TVSNVYAIGDINAG-KPQLTPVAIQAGRYLARRLFA 458 (598)
T ss_dssp SSTTEEECGGGBTT-SCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeeecCC-CCccHHHHHHhHHHHHHHHhc
Confidence 34689999998543 356788999999999998863
No 83
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=44.29 E-value=29 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=27.7
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.+. .+...+-|...|..+|..|+.
T Consensus 329 ~~~~IyA~GD~~~--~~~~~~~A~~~g~~aa~~i~g 362 (491)
T 3urh_A 329 SIAGVYAIGDVVR--GPMLAHKAEDEGVAVAEIIAG 362 (491)
T ss_dssp SSTTEEECGGGSS--SCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEecCC--CccchhHHHHHHHHHHHHHcC
Confidence 3468999999874 357889999999999998863
No 84
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=43.43 E-value=32 Score=25.07 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=27.1
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
.++||.+|+-+.. +...+-|...|..+|..|+.
T Consensus 301 ~~~iya~GD~~~~--~~~~~~A~~~g~~aa~~i~~ 333 (467)
T 1zk7_A 301 NPNIYAAGDCTDQ--PQFVYVAAAAGTRAAINMTG 333 (467)
T ss_dssp STTEEECSTTBSS--CCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeccCCC--cccHHHHHHHHHHHHHHHcC
Confidence 4689999998764 46788899999999998763
No 85
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=43.00 E-value=32 Score=25.14 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=27.5
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.+. .+...+-|...|..+|..|+.
T Consensus 311 ~~~~IyA~GD~~~--~~~~~~~A~~~g~~aa~~i~~ 344 (474)
T 1zmd_A 311 KIPNIYAIGDVVA--GPMLAHKAEDEGIICVEGMAG 344 (474)
T ss_dssp SSTTEEECGGGSS--SCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEeeecCC--CCccHHHHHHHHHHHHHHhcC
Confidence 3468999999875 356778899999999998863
No 86
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=42.91 E-value=36 Score=25.19 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=28.0
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+. .+...+-|...|..+|..|+.
T Consensus 317 ~~~~IyA~GD~~~--~~~l~~~A~~~g~~aa~~i~g 350 (490)
T 1fec_A 317 NVDNIYAIGDVTD--RVMLTPVAINEGAAFVDTVFA 350 (490)
T ss_dssp SSTTEEECGGGGC--SCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeccCC--CccCHHHHHHHHHHHHHHhcC
Confidence 3468999999885 356888999999999999864
No 87
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=42.69 E-value=29 Score=24.95 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=27.7
Q ss_pred CCCcEEEcccccccccc--c------chhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQY--A------TVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~--g------~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+..... | .+.-|...|..+|..|+.
T Consensus 264 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 307 (408)
T 2gqw_A 264 TCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD 307 (408)
T ss_dssp SSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcC
Confidence 34689999998875421 2 678899999999998863
No 88
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=42.52 E-value=36 Score=25.22 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=27.8
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+. .+...+-|+..|..+|..|+.
T Consensus 321 ~~~~IyA~GD~~~--~~~l~~~A~~~g~~aa~~i~g 354 (495)
T 2wpf_A 321 NVPNIYAIGDITD--RLMLTPVAINEGAALVDTVFG 354 (495)
T ss_dssp SSTTEEECGGGGC--SCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeccCC--CccCHHHHHHHHHHHHHHhcC
Confidence 3468999999885 346788999999999998864
No 89
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=41.93 E-value=35 Score=25.23 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=27.3
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
.++||.+|+.+.. +...+-|...|..+|..|+.
T Consensus 305 ~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 305 VDHIFVAGDANNT--LTLLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp STTEEECGGGGTS--SCSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCC--CccHHHHHHHHHHHHHHHcC
Confidence 3689999998864 56788999999999998863
No 90
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=41.72 E-value=40 Score=24.70 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=27.1
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
.++||.+|+-+.. +...+-|+..|..+|..|+.
T Consensus 294 ~~~Iya~GD~~~~--~~~~~~A~~~g~~aa~~i~g 326 (463)
T 2r9z_A 294 VPGVYALGDITGR--DQLTPVAIAAGRRLAERLFD 326 (463)
T ss_dssp STTEEECGGGGTS--CCCHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 4689999998753 46788899999999998863
No 91
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=41.60 E-value=23 Score=25.29 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=27.5
Q ss_pred CCCcEEEcccccccccc--c------chhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQY--A------TVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~--g------~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+..... | +++-|...|..+|..|+.
T Consensus 266 ~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g 309 (404)
T 3fg2_P 266 SDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTG 309 (404)
T ss_dssp SSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCC
Confidence 34689999998875431 2 478899999999998763
No 92
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=41.16 E-value=27 Score=27.55 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=18.6
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREA 104 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA 104 (110)
++|||||+-+.+. ||.+ |..+|..|+
T Consensus 385 ~gLf~AGqinGtt--GYeE-AaaqGl~AG 410 (651)
T 3ces_A 385 QGLFFAGQINGTT--GYEE-AAAQGLLAG 410 (651)
T ss_dssp BTEEECSGGGTCC--CHHH-HHHHHHHHH
T ss_pred CCeEEEEEecCCc--ChHH-HHHHHHHHH
Confidence 4799999988774 7775 555555554
No 93
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=41.13 E-value=38 Score=24.67 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=27.6
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+.. +...+-|...|..+|..|+.
T Consensus 300 ~~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 300 NVGHIYAIGDVNGL--LQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp SSTTEEECGGGGCS--SCSHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeECcCCC--ccCHHHHHHHHHHHHHHhcC
Confidence 34689999998763 56778899999999998864
No 94
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=40.86 E-value=37 Score=24.80 Aligned_cols=30 Identities=3% Similarity=-0.054 Sum_probs=25.3
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.+||.+|.+... ...++++.++++++++|.
T Consensus 409 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 438 (453)
T 2bcg_G 409 DNIYLSRSYDAS---SHFESMTDDVKDIYFRVT 438 (453)
T ss_dssp TSEEECCCCCSC---SBSHHHHHHHHHHHHHHH
T ss_pred CCEEECCCCCcc---ccHHHHHHHHHHHHHHHH
Confidence 579998887765 446999999999999986
No 95
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=40.57 E-value=31 Score=24.76 Aligned_cols=36 Identities=19% Similarity=0.019 Sum_probs=27.7
Q ss_pred CCCcEEEccccccccc-------ccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQ-------YATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~-------~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+.... ..+++-|...|..+|..|+.
T Consensus 266 ~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g 308 (410)
T 3ef6_A 266 LAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILG 308 (410)
T ss_dssp SSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcC
Confidence 3468999999887532 23478999999999998863
No 96
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=40.49 E-value=39 Score=24.68 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=27.0
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
.++||.+|+-+.. +...+-|...|..+|..|+.
T Consensus 317 ~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~~ 349 (478)
T 1v59_A 317 FPHIKVVGDVTFG--PMLAHKAEEEGIAAVEMLKT 349 (478)
T ss_dssp STTEEECGGGSSS--CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeccCCC--cccHHHHHHHHHHHHHHHcC
Confidence 4689999998763 46778899999999998863
No 97
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=39.88 E-value=37 Score=27.93 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=27.6
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+.+. .+..+.-|+..|..||..|.
T Consensus 472 s~~~VfA~GD~~~--~~~~~~~A~~~G~~aA~~i~ 504 (1025)
T 1gte_A 472 SEPWVFAGGDIVG--MANTTVESVNDGKQASWYIH 504 (1025)
T ss_dssp SSTTEEECSGGGC--SCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCC--CchHHHHHHHHHHHHHHHHH
Confidence 3468999999875 35688999999999999886
No 98
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=39.31 E-value=28 Score=27.04 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=25.7
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
++||.+|+.+.. +.+.-|+..|..+|..|+.
T Consensus 642 ~~VyaiGD~~~~---~~~~~A~~~g~~aa~~i~~ 672 (690)
T 3k30_A 642 ASVRGIGDAWAP---GTIAAAVWSGRRAAEEFDA 672 (690)
T ss_dssp SEEEECGGGTSC---BCHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCch---hhHHHHHHHHHHHHHHHHh
Confidence 589999998875 5566699999999998864
No 99
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=38.99 E-value=44 Score=23.60 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=28.0
Q ss_pred CCCcEEEccccccc-ccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSE-DQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~-~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.++||-+|+.+.. ..+-+.+-|...|..+|+.|+
T Consensus 285 ~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~ 320 (401)
T 3vrd_B 285 LQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVV 320 (401)
T ss_dssp SSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHH
Confidence 33689999998754 346788899999999999886
No 100
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=38.66 E-value=38 Score=24.61 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=26.8
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+-+.. +...+-|...|..+|..|+
T Consensus 308 ~~~~Iya~GD~~~~--~~~~~~A~~~g~~aa~~i~ 340 (470)
T 1dxl_A 308 NVSGVYAIGDVIPG--PMLAHKAEEDGVACVEYLA 340 (470)
T ss_dssp SSTTEEECSTTSSS--CCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeccCCC--CccHHHHHHHHHHHHHHHc
Confidence 34689999998753 4667889999999999886
No 101
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=38.26 E-value=39 Score=24.54 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=26.8
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
.++||.+|+-+.. +...+-|...|..+|..|+.
T Consensus 300 ~~~Iya~GD~~~~--~~~~~~A~~~g~~aa~~i~~ 332 (455)
T 1ebd_A 300 VPNIFAIGDIVPG--PALAHKASYEGKVAAEAIAG 332 (455)
T ss_dssp STTEEECGGGSSS--CCCHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEeccCCC--cccHHHHHHHHHHHHHHHcC
Confidence 4689999998763 46678899999999998863
No 102
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=38.23 E-value=22 Score=27.25 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=27.3
Q ss_pred cEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 77 VLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 77 rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
.||-+||-. .+.|-|-.|..+|+++|+.|+.
T Consensus 510 gly~~Gega--G~a~gi~~Aa~~G~~~a~~i~~ 540 (549)
T 3nlc_A 510 GFYPAGEGA--GYAGGILSAGIDGIKVAEAVAR 540 (549)
T ss_dssp TEEECHHHH--TSCCSHHHHHHHHHHHHHHHHH
T ss_pred CEEEccccC--ChhhHHHHHHHHHHHHHHHHHH
Confidence 699999986 4678899999999999999864
No 103
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=37.93 E-value=44 Score=24.66 Aligned_cols=34 Identities=18% Similarity=0.031 Sum_probs=27.2
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+.. +...+-|...|..+|..|+.
T Consensus 308 ~~~~IyA~GD~~~~--~~l~~~A~~~g~~aa~~i~g 341 (499)
T 1xdi_A 308 LATGIYAAGDCTGL--LPLASVAAMQGRIAMYHALG 341 (499)
T ss_dssp SSTTEEECSGGGTS--CSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeccCCC--cccHHHHHHHHHHHHHHhcC
Confidence 34689999998763 46678899999999998863
No 104
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=36.69 E-value=35 Score=25.80 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=24.9
Q ss_pred cCccCCCCCCCcEEEccccccccccc-------chhHHHHHHHHHHHHHH
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSEDQYA-------TVNGAIETGWREADRIL 108 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~~~g-------~~~GA~~SG~raA~~i~ 108 (110)
..|+. .||-|||.++...+| ++-.|+..|.+|++.+.
T Consensus 364 ~t~I~------GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa 407 (540)
T 1chu_A 364 RTDVE------GLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDIT 407 (540)
T ss_dssp BCSSB------TEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCccC------CEEeccccccccccCCCcCcchhHHHHHHHHHHHHHHHH
Confidence 46785 799999988533211 34446777888887764
No 105
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=36.44 E-value=46 Score=17.14 Aligned_cols=37 Identities=11% Similarity=-0.015 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCc
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRG 46 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G 46 (110)
+++.+.+.+.|.+.+| ..++-+.+.+..=..+-|..|
T Consensus 16 ~~L~~~it~~~~~~lg---~~~~~v~V~i~E~~~~~w~~g 52 (62)
T 3m20_A 16 REFVERLTSVAAEIYG---MDRSAITILIHEPPAENVGVG 52 (62)
T ss_dssp HHHHHHHHHHHHHHHT---CCTTSCEEEEECCCGGGEEET
T ss_pred HHHHHHHHHHHHHHhC---cCcceEEEEEEEeCHHHeEEC
Confidence 4566677778888887 233445555555444445443
No 106
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=36.18 E-value=28 Score=26.20 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=19.8
Q ss_pred CcEEEcccccccccccchhHHH---HHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGAI---ETGWREADRI 107 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~---~SG~raA~~i 107 (110)
++|||||+-+-. -||.+.|. .+|..+|..+
T Consensus 329 ~~Lf~AGqi~G~--~Gy~eAaa~Gl~AG~naa~~~ 361 (443)
T 3g5s_A 329 EGLYAAGVLAGV--EGYLESAATGFLAGLNAARKA 361 (443)
T ss_dssp EEEEECGGGGTB--CSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEECcccccc--HHHHHHHHhHHHHHHHHHHHh
Confidence 589999999987 47776543 3444445443
No 107
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=36.02 E-value=37 Score=24.63 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=27.2
Q ss_pred CCCcEEEcccccccccc--c------chhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQY--A------TVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~--g------~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+..... | .+.-|...|..+|..|+.
T Consensus 275 s~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g 318 (431)
T 1q1r_A 275 SDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCG 318 (431)
T ss_dssp SSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcC
Confidence 34689999998875321 2 567899999999998863
No 108
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=35.66 E-value=46 Score=24.83 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=27.2
Q ss_pred CCCcEEEcccccccc--------cccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSED--------QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~--------~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+... .....+-|...|..+|+.|+.
T Consensus 294 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 337 (565)
T 3ntd_A 294 SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFG 337 (565)
T ss_dssp SSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcC
Confidence 347899999987532 123578899999999998863
No 109
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=35.54 E-value=44 Score=25.85 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=23.8
Q ss_pred cCccCCCCCCCcEEEcccccccccccchhHHHHHHHHHHHHH
Q psy7655 66 GAPVSNGMGKPVLLFAGEATSEDQYATVNGAIETGWREADRI 107 (110)
Q Consensus 66 ~~p~~~~~~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i 107 (110)
.+|+. .||=|||.+......+.-+++..|..+++.+
T Consensus 428 ~t~I~------GLyAaGe~a~~~~~r~~~~sl~~G~~ag~~a 463 (643)
T 1jnr_A 428 MTTVK------GLFAIGDCAGANPHKFSSGSFTEGRIAAKAA 463 (643)
T ss_dssp BCSSB------TEEECGGGBCSCCCCHHHHHHHHHHHHHHHH
T ss_pred CceeC------CEEeeeccccccccccchhHHHHHHHHHHHH
Confidence 46785 6999999887644444445666666665543
No 110
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=35.44 E-value=44 Score=24.90 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=27.3
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+-+.. +...+-|...|..+|..|.
T Consensus 344 ~~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~ 376 (523)
T 1mo9_A 344 SVPNVYAVGDLIGG--PMEMFKARKSGCYAARNVM 376 (523)
T ss_dssp SSTTEEECGGGGCS--SCSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeecCCC--cccHHHHHHHHHHHHHHHc
Confidence 44689999998853 4678889999999999886
No 111
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=35.25 E-value=46 Score=24.44 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=27.1
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+-+.. +...+-|...|..+|..|+
T Consensus 315 ~~~~IyA~GD~~~~--~~l~~~A~~~g~~aa~~i~ 347 (482)
T 1ojt_A 315 NVPHIYAIGDIVGQ--PMLAHKAVHEGHVAAENCA 347 (482)
T ss_dssp SSTTEEECGGGTCS--SCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcccCC--CccHHHHHHHHHHHHHHHc
Confidence 34689999998863 4677889999999999886
No 112
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=33.92 E-value=50 Score=24.14 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=27.0
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+-+.. +...+-|...|..+|..|+
T Consensus 300 ~~~~Iya~GD~~~~--~~l~~~A~~~g~~aa~~i~ 332 (464)
T 2eq6_A 300 SVPGVYAIGDAARP--PLLAHKAMREGLIAAENAA 332 (464)
T ss_dssp SSTTEEECGGGTCS--SCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeccCCC--cccHHHHHHHHHHHHHHhc
Confidence 34689999998753 5677889999999999886
No 113
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=33.60 E-value=53 Score=16.98 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCC
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHF 44 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~ 44 (110)
+++.+.+.+.|.+.+| ..++-+.+.+..=..+.|.
T Consensus 17 ~~L~~~it~~~~~~lg---~p~~~v~V~i~e~~~~~w~ 51 (65)
T 3ry0_A 17 AALGEALTAAAHETLG---TPVEAVRVIVEETPPERWF 51 (65)
T ss_dssp HHHHHHHHHHHHHHHC---CCGGGCEEEEEEECGGGCE
T ss_pred HHHHHHHHHHHHHHhC---cCcccEEEEEEEcCHHHee
Confidence 3566677888888887 2223344444443333343
No 114
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=32.94 E-value=57 Score=24.10 Aligned_cols=21 Identities=29% Similarity=0.261 Sum_probs=17.1
Q ss_pred cccchhHHHHHHHHHHHHHHc
Q psy7655 89 QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 89 ~~g~~~GA~~SG~raA~~i~~ 109 (110)
.+...+-|...|..+|..|+.
T Consensus 350 ~~~~~~~A~~~g~~aa~~i~g 370 (500)
T 1onf_A 350 NVQLTPVAINAGRLLADRLFL 370 (500)
T ss_dssp CCCCHHHHHHHHHHHHHHHHS
T ss_pred cccchhHHHHHHHHHHHHHhC
Confidence 345778899999999998864
No 115
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=32.86 E-value=61 Score=23.46 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+-+.. +...+-|...|..+|..|+
T Consensus 294 ~~~iya~GD~~~~--~~~~~~A~~~g~~aa~~i~ 325 (455)
T 2yqu_A 294 VPHIYAIGDVVRG--PMLAHKASEEGIAAVEHMV 325 (455)
T ss_dssp STTEEECGGGSSS--CCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCC--ccCHHHHHHhHHHHHHHHc
Confidence 4689999998763 5677889999999999886
No 116
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.85 E-value=44 Score=18.97 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg 22 (110)
|..|+.+++.+.+++.|...++
T Consensus 8 m~~m~~~~i~~~l~~~l~~~l~ 29 (99)
T 2dnw_A 8 MPPLTLEGIQDRVLYVLKLYDK 29 (99)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 4568899999999999999987
No 117
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=32.83 E-value=51 Score=24.60 Aligned_cols=35 Identities=14% Similarity=0.016 Sum_probs=30.1
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.++||-+|+-.....+.+.+-|.+.|..+|+.|.
T Consensus 363 ~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~ 397 (502)
T 4g6h_A 363 GSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFD 397 (502)
T ss_dssp TCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHH
Confidence 34689999998887788899999999999998874
No 118
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=31.84 E-value=61 Score=23.45 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=27.5
Q ss_pred CCCcEEEcccccccc--------cccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSED--------QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~--------~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.+... ++...+-|...|..+|..|+.
T Consensus 271 ~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g 314 (449)
T 3kd9_A 271 SVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAG 314 (449)
T ss_dssp SSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcC
Confidence 346899999988532 235678899999999998763
No 119
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=31.79 E-value=35 Score=24.77 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=27.5
Q ss_pred CCCcEEEcccccccc--------cccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSED--------QYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~--------~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+-+... .+...+-|...|..+|..|+
T Consensus 273 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 315 (452)
T 2cdu_A 273 SNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLT 315 (452)
T ss_dssp SSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred CCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhC
Confidence 346899999998743 13568899999999998775
No 120
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=31.53 E-value=60 Score=23.90 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=27.8
Q ss_pred CCCcEEEcccccccc--------cccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSED--------QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~--------~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+-+... .....+-|...|..+|..|+.
T Consensus 317 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g 360 (490)
T 2bc0_A 317 SIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACG 360 (490)
T ss_dssp SSTTEEECGGGBCEEETTTTEEECCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEeeeeEEeccccCCceeecccHHHHHHHHHHHHHHhcC
Confidence 346899999988742 235678899999999998863
No 121
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=31.07 E-value=60 Score=23.65 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=26.9
Q ss_pred CCCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 74 GKPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
..++||.+|+-+.. +...+-|...|..+|..|+
T Consensus 296 ~~~~Iya~GD~~~~--~~~~~~A~~~g~~aa~~i~ 328 (458)
T 1lvl_A 296 SMHNVWAIGDVAGE--PMLAHRAMAQGEMVAEIIA 328 (458)
T ss_dssp SSTTEEECGGGGCS--SCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeeccCCC--cccHHHHHHHHHHHHHHhc
Confidence 34689999998863 4677889999999999875
No 122
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=29.54 E-value=26 Score=25.55 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=26.5
Q ss_pred CCcEEEccccccccc--------ccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQ--------YATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~--------~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+.+.... ....+-|...|..+|..|+
T Consensus 271 ~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 312 (452)
T 3oc4_A 271 VPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLE 312 (452)
T ss_dssp STTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSS
T ss_pred CCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhc
Confidence 468999999887532 2477889999999988765
No 123
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=29.35 E-value=66 Score=16.74 Aligned_cols=36 Identities=14% Similarity=-0.023 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCC
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFR 45 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~ 45 (110)
+++.+.+.+.|.+.+| ..++-+.+.+..=..+.|..
T Consensus 20 ~~l~~~lt~~l~~~lg---~p~~~v~V~i~e~~~~~w~~ 55 (67)
T 3m21_A 20 QQLIEGVSDLMVKVLN---KNKASIVVIIDEVDSNNYGL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHC---CCGGGCEEEEEECCTTTEEE
T ss_pred HHHHHHHHHHHHHHHC---cCcccEEEEEEEeCHHHeEE
Confidence 4566777888888887 22444555555544444443
No 124
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.92 E-value=47 Score=21.15 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy7655 2 ESLTDKQVQIEVMKAFRFFL 21 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~f 21 (110)
+.|+++|+ +.|+++|.|-+
T Consensus 15 s~LteeEr-~~Il~VL~Rd~ 33 (153)
T 2zet_C 15 STLTDEEA-EHVWAVVQRDF 33 (153)
T ss_dssp TTSCHHHH-HHHHHHHHHHH
T ss_pred ccCCHHHH-HHHHHHHHhHH
Confidence 55677776 66666666554
No 125
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=28.90 E-value=47 Score=20.73 Aligned_cols=20 Identities=0% Similarity=0.258 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHHHHhC
Q psy7655 3 SLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg 22 (110)
.||-+++.+.+++.|+++|+
T Consensus 3 ~~sldevL~~v~~~l~~~~~ 22 (165)
T 3o5y_A 3 AMSLDDIINNMIDKLKLLVH 22 (165)
T ss_dssp -CCHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHhcC
Confidence 58999999999999999998
No 126
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=28.89 E-value=10 Score=23.30 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=6.8
Q ss_pred CCCcEEEcccc
Q psy7655 74 GKPVLLFAGEA 84 (110)
Q Consensus 74 ~~~rl~FAGe~ 84 (110)
|+.|+|||++.
T Consensus 50 GR~R~YFA~se 60 (116)
T 3sk7_A 50 GRKRVYFADNE 60 (116)
T ss_dssp ---CCCEESSH
T ss_pred CCcceeecCCH
Confidence 45799999864
No 127
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=28.75 E-value=80 Score=18.53 Aligned_cols=20 Identities=5% Similarity=0.044 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHHHhC
Q psy7655 3 SLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg 22 (110)
+++.++.++.|+..|.++..
T Consensus 9 ~~e~e~~ik~~~~~L~~I~~ 28 (94)
T 2qzg_A 9 KLSPADKLKNISSMLEEIVE 28 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHHHHHHc
Confidence 56889999999999999997
No 128
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=28.53 E-value=66 Score=23.43 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=27.0
Q ss_pred CCCcEEEcccccccc--------cccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSED--------QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~--------~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.+... .....+-|...|..+|+.|+.
T Consensus 285 ~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 328 (472)
T 3iwa_A 285 SDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLAD 328 (472)
T ss_dssp SSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTT
T ss_pred CCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcC
Confidence 346899999988532 123668899999999998863
No 129
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=28.26 E-value=62 Score=16.09 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhC
Q psy7655 7 KQVQIEVMKAFRFFLG 22 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg 22 (110)
+++.+.+.+.|.+.+|
T Consensus 20 ~~l~~~l~~~l~~~lg 35 (63)
T 2x4k_A 20 KNLVSEVTDAVEKTTG 35 (63)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3567777888889998
No 130
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=27.78 E-value=42 Score=26.37 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.4
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~ 109 (110)
++||-+|+.+.. ..+.-|+..|..+|..|..
T Consensus 667 ~~VyAiGD~~~~---~~~~~A~~~G~~aA~~i~~ 697 (729)
T 1o94_A 667 KGIYLIGDAEAP---RLIADATFTGHRVAREIEE 697 (729)
T ss_dssp CEEEECGGGTSC---CCHHHHHHHHHHHHHTTTS
T ss_pred CCeEEEeCccch---hhHHHHHHHHHHHHHHhhh
Confidence 589999998763 5677799999999988753
No 131
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=27.35 E-value=79 Score=23.00 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=27.5
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHHHcC
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRILKG 110 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~~~ 110 (110)
++|+|.|---... +--||-++.+|+.++++|+.+
T Consensus 357 ~~v~~~GRlg~y~-Y~~md~~i~~al~~~~~~~~~ 390 (397)
T 3hdq_A 357 QDVTFVGRLATYR-YYNMDQVVAQALATFRRLQGQ 390 (397)
T ss_dssp TTEEECSTTTTTC-CCCHHHHHHHHHHHHHHHHC-
T ss_pred CCEEEcccceEEE-eccHHHHHHHHHHHHHHHhcc
Confidence 3799999766654 477999999999999998864
No 132
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=27.25 E-value=16 Score=22.34 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=8.6
Q ss_pred CCCcEEEcccc
Q psy7655 74 GKPVLLFAGEA 84 (110)
Q Consensus 74 ~~~rl~FAGe~ 84 (110)
|+.|+|||++.
T Consensus 49 GR~R~YFA~~~ 59 (115)
T 1j3e_A 49 GRTRVYFAADE 59 (115)
T ss_dssp CSSSBCEESSS
T ss_pred CCCCceeCCCH
Confidence 45799999864
No 133
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=27.23 E-value=31 Score=22.45 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=23.7
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHcC
Q psy7655 82 GEATSEDQYATVNGAIETGWREADRILKG 110 (110)
Q Consensus 82 Ge~ts~~~~g~~~GA~~SG~raA~~i~~~ 110 (110)
.|+.-..+..-|-|+++.|...|++||.|
T Consensus 117 ~ee~L~~Fm~lIgGGiEqGF~EArdIL~G 145 (175)
T 3sjr_A 117 APAIRQAFAPLARAGLERGYQEACQVLRQ 145 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 45555567788999999999999999864
No 134
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=26.86 E-value=62 Score=25.31 Aligned_cols=32 Identities=9% Similarity=0.082 Sum_probs=21.8
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRI 107 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i 107 (110)
+.||-|||..+....|..-+++..|..++..+
T Consensus 453 ~gl~a~Ge~~~~~~hg~~~~sl~~g~~ag~~a 484 (662)
T 3gyx_A 453 EGLWTCADGVGASGHKFSSGSHAEGRIVGKQM 484 (662)
T ss_dssp BTEECCSSSBCSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCeEeCccccccccCccHhHHHHHHHHHHHHH
Confidence 37999999886555555666666666665543
No 135
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=26.21 E-value=72 Score=17.12 Aligned_cols=21 Identities=14% Similarity=0.128 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhC
Q psy7655 2 ESLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 2 ~~ls~e~~~~~~~~~L~~~fg 22 (110)
-.|+.+++.+.+.+.+.+.++
T Consensus 3 ~~m~~~~i~~~l~~~i~~~l~ 23 (84)
T 2kwl_A 3 GSMDNDEIFSKVRSIISEQLD 23 (84)
T ss_dssp CCSTHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 368999999999999999997
No 136
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=26.17 E-value=48 Score=24.40 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=25.6
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.||.+|+-... ..+.+..|+..|..+|..|+
T Consensus 360 p~vya~Gd~~~g-~~~~i~~a~~~g~~aa~~i~ 391 (460)
T 1cjc_A 360 PGLYCSGWVKRG-PTGVITTTMTDSFLTGQILL 391 (460)
T ss_dssp TTEEECTHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcC-CCccHHHHHHHHHHHHHHHH
Confidence 589999987742 45667889999999998875
No 137
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=25.94 E-value=68 Score=17.36 Aligned_cols=39 Identities=5% Similarity=-0.021 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcccC
Q psy7655 8 QVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYS 49 (110)
Q Consensus 8 ~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ys 49 (110)
++.+.+.+.|.+.+| ..++-+.+.+..=..+.|..|+-.
T Consensus 19 ~L~~~it~~l~~~lg---~p~~~v~V~i~E~~~~~w~~gG~~ 57 (76)
T 3ej9_A 19 ALSAGLLRVISEATG---EPRENIFFVIREGSGINFVQHGEH 57 (76)
T ss_dssp HHHHHHHHHHHHHHC---CCGGGCEEEEEEECGGGEEETTEE
T ss_pred HHHHHHHHHHHHHHC---cCcccEEEEEEEeCHHHeEECCEE
Confidence 566677788888887 233445555555555556655444
No 138
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=25.69 E-value=87 Score=22.92 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=26.5
Q ss_pred CCcEEEccccccccc--------ccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQ--------YATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~--------~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+-+.... ....+-|...|..+|..|+
T Consensus 310 ~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~ 351 (480)
T 3cgb_A 310 VQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNML 351 (480)
T ss_dssp STTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhc
Confidence 468999999886432 2357889999999999885
No 139
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=25.49 E-value=16 Score=22.86 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=8.6
Q ss_pred CCCcEEEcccc
Q psy7655 74 GKPVLLFAGEA 84 (110)
Q Consensus 74 ~~~rl~FAGe~ 84 (110)
|+.|+|||++.
T Consensus 65 GR~R~YFA~s~ 75 (131)
T 1lrr_A 65 GRTRVYFAADE 75 (131)
T ss_dssp CSSSBCEESSH
T ss_pred CCCCceeCCCH
Confidence 45799999864
No 140
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=25.34 E-value=72 Score=15.89 Aligned_cols=15 Identities=20% Similarity=0.177 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhC
Q psy7655 8 QVQIEVMKAFRFFLG 22 (110)
Q Consensus 8 ~~~~~~~~~L~~~fg 22 (110)
++.+.+.+.|.+.+|
T Consensus 18 ~l~~~i~~~l~~~lg 32 (61)
T 2opa_A 18 NLVEKVTEAVKETTG 32 (61)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 466677788888887
No 141
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=25.15 E-value=76 Score=23.45 Aligned_cols=30 Identities=23% Similarity=0.095 Sum_probs=25.0
Q ss_pred CcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
+.||.+|+.... +.+.-|+..|..+|..|.
T Consensus 344 ~~vya~GD~~~~---~~~~~A~~~g~~aa~~i~ 373 (493)
T 1y56_A 344 DGIYVAGSAVSI---KPHYANYLEGKLVGAYIL 373 (493)
T ss_dssp TTEEECSTTTCC---CCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccCCc---cCHHHHHHHHHHHHHHHH
Confidence 579999998764 567889999999998875
No 142
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=24.96 E-value=42 Score=17.64 Aligned_cols=13 Identities=0% Similarity=0.225 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhC
Q psy7655 10 QIEVMKAFRFFLG 22 (110)
Q Consensus 10 ~~~~~~~L~~~fg 22 (110)
.+..++.|+.|||
T Consensus 12 ~~~~~~~L~~MFP 24 (54)
T 1p3q_Q 12 RKDTLNTLQNMFP 24 (54)
T ss_dssp HHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcc
Confidence 3567899999999
No 143
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=24.94 E-value=60 Score=24.74 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=25.3
Q ss_pred CcEEEcccccccccc---cchhHHHHHHHHHHHHHH
Q psy7655 76 PVLLFAGEATSEDQY---ATVNGAIETGWREADRIL 108 (110)
Q Consensus 76 ~rl~FAGe~ts~~~~---g~~~GA~~SG~raA~~i~ 108 (110)
+|++++|++.+.-.+ .-++=|+++|..+|+.|.
T Consensus 347 ~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~ 382 (584)
T 2gmh_A 347 PGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIF 382 (584)
T ss_dssp TTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEcccccccCccccccHHHHHHHHHHHHHHHH
Confidence 689999998876543 346668889998888875
No 144
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=24.50 E-value=84 Score=23.63 Aligned_cols=36 Identities=22% Similarity=0.136 Sum_probs=27.1
Q ss_pred CCCcEEEcccccccc--------cccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSED--------QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~--------~~g~~~GA~~SG~raA~~i~~ 109 (110)
..++||.+|+.+... .....+-|...|..+|+.|+.
T Consensus 309 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 309 SDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHG 352 (588)
T ss_dssp SSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcC
Confidence 346899999988532 134667899999999998864
No 145
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=24.23 E-value=41 Score=24.22 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=24.6
Q ss_pred CcEEEccccccccc----cc-chhHHHHHHHHHHHHHHc
Q psy7655 76 PVLLFAGEATSEDQ----YA-TVNGAIETGWREADRILK 109 (110)
Q Consensus 76 ~rl~FAGe~ts~~~----~g-~~~GA~~SG~raA~~i~~ 109 (110)
|.|+.+|=+.+.-+ .| +--|-+.||+++|+.|++
T Consensus 294 ~gl~~~gm~~~~~~g~~rmgp~fg~m~~sg~~~a~~~~~ 332 (344)
T 3jsk_A 294 PGLIVGGMELSEIDGANRMGPTFGAMALSGVKAAHEAIR 332 (344)
T ss_dssp TTEEECGGGHHHHHTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEechhhHhhcCCCCCCcccceeeecCHHHHHHHHH
Confidence 57999997766422 23 445668999999999874
No 146
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=24.11 E-value=72 Score=17.27 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=16.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC
Q psy7655 1 MESLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~fg 22 (110)
|..+|++|+.+.+.+.-..+|.
T Consensus 6 lr~~s~~EL~~~l~elk~ELf~ 27 (67)
T 2zjr_V 6 MRNLQATDFAKEIDARKKELME 27 (67)
T ss_dssp TTTSCHHHHHHHHHTHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHH
Confidence 3568999999888777777763
No 147
>1wn9_A The hypothetical protein (TT1805); thermus thermophillus, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus} SCOP: d.319.1.1 PDB: 1wna_A
Probab=23.97 E-value=98 Score=19.17 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCCCCccceeeccccCCCCC
Q psy7655 14 MKAFRFFLGAKYTIPEPARILTTSWGSNKH 43 (110)
Q Consensus 14 ~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~ 43 (110)
++.|+.-+. +...+...-++++||....-
T Consensus 14 l~Al~~aLk-~~~fp~~~v~liTDwQd~R~ 42 (131)
T 1wn9_A 14 LEALKAALG-GLKLSEAKVYLITDWQDKRD 42 (131)
T ss_dssp HHHHHHHHT-TCCCTTCEEEEEEECCSSGG
T ss_pred HHHHHHHHc-cCCCCCceEEEEecccccch
Confidence 444444444 35677888899999986643
No 148
>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1
Probab=23.94 E-value=59 Score=19.52 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHHhC
Q psy7655 3 SLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg 22 (110)
.++++++.+.+.+.+..+||
T Consensus 28 ~l~~~~l~~~I~~av~~~fG 47 (120)
T 2av5_A 28 QFNKDEIKEAIWNACLRTLG 47 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCC
Confidence 57899999999999999998
No 149
>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1
Probab=23.92 E-value=59 Score=19.54 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHHHhC
Q psy7655 3 SLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg 22 (110)
.+++.++.+.+.+.+..+||
T Consensus 28 ~l~~~~l~~~I~~av~~~fG 47 (120)
T 2czv_C 28 DFTKDEVKELIWKSSLEVLG 47 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcC
Confidence 57899999999999999998
No 150
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=23.82 E-value=72 Score=16.88 Aligned_cols=16 Identities=6% Similarity=-0.049 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhC
Q psy7655 7 KQVQIEVMKAFRFFLG 22 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg 22 (110)
+++.+.+.+.|.+.+|
T Consensus 18 ~~L~~~it~~l~~~lg 33 (72)
T 3mb2_A 18 AELARALSAAAAAAFD 33 (72)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3566777888888887
No 151
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=23.59 E-value=1e+02 Score=22.33 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=27.1
Q ss_pred CCCcEEEccccccccc--------ccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSEDQ--------YATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~~--------~g~~~GA~~SG~raA~~i~~ 109 (110)
+.++||-+|+-+...+ ....+-|...|..+|+.|..
T Consensus 267 s~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g 310 (437)
T 4eqs_A 267 NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAG 310 (437)
T ss_dssp SSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcC
Confidence 3468999999876432 23578899999999998863
No 152
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=23.51 E-value=85 Score=16.05 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=13.2
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy7655 1 MESLTDKQVQIEVMKAFR 18 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~ 18 (110)
|+.|||+.+++.....+.
T Consensus 3 M~~LSDe~LiesY~~A~e 20 (48)
T 3fyr_A 3 MRKLSDELLIESYFKATE 20 (48)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred hhhhcHHHHHHHHHHHHH
Confidence 567888888887766654
No 153
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=23.48 E-value=82 Score=18.59 Aligned_cols=20 Identities=10% Similarity=0.310 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHHHHhC
Q psy7655 3 SLTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 3 ~ls~e~~~~~~~~~L~~~fg 22 (110)
.++.+++++.++.|+.-+|.
T Consensus 8 ~~~~~~l~~~I~~QvEyYFS 27 (101)
T 2cqk_A 8 AVSTEDLKECLKKQLEFCFS 27 (101)
T ss_dssp SCCHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHhhcc
Confidence 47899999999999999997
No 154
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=23.34 E-value=1e+02 Score=17.02 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=28.6
Q ss_pred CCCCHH---HHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcc
Q psy7655 2 ESLTDK---QVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGS 47 (110)
Q Consensus 2 ~~ls~e---~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ 47 (110)
|..++| .+++.+.+...+-++ ..++-+++++++-.++-|.-|+
T Consensus 9 EGRT~EQK~~lI~~VT~a~~eslg---ap~esVrVlItE~p~en~gi~G 54 (70)
T 3ej9_B 9 TGLSVARKQQLIRDVIDVTNKSIG---SDPKIINVLLVEHAEANMSISG 54 (70)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHC---CCGGGCEEEEEEECGGGEESTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcC---CChHHEEEEeeeCChhhceeee
Confidence 344554 355556666777777 5668888888887777776544
No 155
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=21.81 E-value=96 Score=16.20 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHHHhC
Q psy7655 4 LTDKQVQIEVMKAFRFFLG 22 (110)
Q Consensus 4 ls~e~~~~~~~~~L~~~fg 22 (110)
|+.+++.+.+.+.+.+.++
T Consensus 1 M~~~~i~~~l~~~i~~~l~ 19 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQ 19 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 6788999999999999997
No 156
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=21.74 E-value=47 Score=22.99 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccceeeccccCCCCCCCcc
Q psy7655 7 KQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGS 47 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg~~~~~~~~~~~~~~~W~~dp~~~G~ 47 (110)
.++-..+...|.++|+. .-..+.---...+|.+|+-....
T Consensus 264 k~i~~~ar~~~~~~~~~-~v~l~l~vkv~~~w~~~~~~~~~ 303 (308)
T 3iev_A 264 KEIGKRARQELELILGR-PVYLELWVKVVPDWRRRPEYVRL 303 (308)
T ss_dssp HHHHHHHHHHHHHHHTS-CEEEEEEEEECTTGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-ceEEEEEEEECCCcccCHHHHHH
Confidence 35667889999999982 22233334457899998865433
No 157
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=21.61 E-value=59 Score=17.38 Aligned_cols=21 Identities=10% Similarity=0.235 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q psy7655 1 MESLTDKQVQIEVMKAFRFFL 21 (110)
Q Consensus 1 ~~~ls~e~~~~~~~~~L~~~f 21 (110)
|..+|++|+.+.+.+.-..+|
T Consensus 6 lr~~s~~EL~~~l~elk~Elf 26 (63)
T 3r8s_Y 6 LREKSVEELNTELLNLLREQF 26 (63)
T ss_dssp TTSCHHHHHHHHHHHHTHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHH
Confidence 356889999988887777776
No 158
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=21.39 E-value=89 Score=15.53 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhC
Q psy7655 8 QVQIEVMKAFRFFLG 22 (110)
Q Consensus 8 ~~~~~~~~~L~~~fg 22 (110)
++.+.+.+.|.+.+|
T Consensus 18 ~l~~~i~~~l~~~lg 32 (62)
T 1otf_A 18 TLIRQVSEAMANSLD 32 (62)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 466677788888887
No 159
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=21.06 E-value=59 Score=23.08 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=24.2
Q ss_pred CCcEEEcccccccccccc---hhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYAT---VNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~---~~GA~~SG~raA~~i~ 108 (110)
.+||+++|++.+...+-. +.=|++++...|..|.
T Consensus 302 ~grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~ 338 (410)
T 3c96_A 302 RGRITLLGDAAHLMYPMGANGASQAILDGIELAAALA 338 (410)
T ss_dssp BTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEecccCCCCCccchhHHHHHHHHHHHHHHHh
Confidence 369999999988765543 4447777777776664
No 160
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=20.89 E-value=77 Score=22.86 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=26.1
Q ss_pred CCcEEEcccccccc--------cccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSED--------QYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~--------~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+-+... .....+-|...|..+|..|+
T Consensus 273 ~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~ 314 (447)
T 1nhp_A 273 EPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLE 314 (447)
T ss_dssp STTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred CCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhc
Confidence 46899999988642 12467889999999998775
No 161
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=20.68 E-value=1.4e+02 Score=21.40 Aligned_cols=36 Identities=14% Similarity=-0.076 Sum_probs=26.8
Q ss_pred CCCcEEEcccccccc----------cccchhHHHHHHHHHHHHHHc
Q psy7655 74 GKPVLLFAGEATSED----------QYATVNGAIETGWREADRILK 109 (110)
Q Consensus 74 ~~~rl~FAGe~ts~~----------~~g~~~GA~~SG~raA~~i~~ 109 (110)
+.++||-+|+-++.. .+-+-+-|...|.-+|+.|++
T Consensus 285 ~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~ 330 (430)
T 3hyw_A 285 TYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVN 330 (430)
T ss_dssp SSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHH
Confidence 346899999988643 234567799999999988763
No 162
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.63 E-value=53 Score=17.93 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhC
Q psy7655 11 IEVMKAFRFFLG 22 (110)
Q Consensus 11 ~~~~~~L~~~fg 22 (110)
+..+++|+.|||
T Consensus 19 ~~~v~~L~~MFP 30 (67)
T 2dhy_A 19 NQAMDDFKTMFP 30 (67)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHHCC
Confidence 356788999999
No 163
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=20.42 E-value=79 Score=14.54 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhC
Q psy7655 7 KQVQIEVMKAFRFFLG 22 (110)
Q Consensus 7 e~~~~~~~~~L~~~fg 22 (110)
+.+++.+.+-|+.||.
T Consensus 13 e~vKk~vfdtLk~~Y~ 28 (31)
T 1qey_A 13 ELVKKMVFDTLKDLYK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4566667777877774
No 164
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=20.37 E-value=82 Score=23.11 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=24.8
Q ss_pred CCcEEEcccccccccccchhHHHHHHHHHHHHHH
Q psy7655 75 KPVLLFAGEATSEDQYATVNGAIETGWREADRIL 108 (110)
Q Consensus 75 ~~rl~FAGe~ts~~~~g~~~GA~~SG~raA~~i~ 108 (110)
.++||.+|+-+.. ..+.+.-|...|..+|..|+
T Consensus 351 ~pgvya~GD~~~g-p~~~i~~a~~~g~~~a~~i~ 383 (456)
T 1lqt_A 351 SPNEYVVGWIKRG-PTGVIGTNKKDAQDTVDTLI 383 (456)
T ss_dssp CSSEEECTHHHHC-SCSCTTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeccCCC-CchhHHHHHHHHHHHHHHHH
Confidence 3689999987752 34556668889998888875
No 165
>3fmt_A Protein SEQA; protein-DNA complex, hemimethylated GATC, DNA replication; HET: 6MA; 2.98A {Escherichia coli}
Probab=20.26 E-value=23 Score=22.99 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=8.8
Q ss_pred CCCcEEEcccc
Q psy7655 74 GKPVLLFAGEA 84 (110)
Q Consensus 74 ~~~rl~FAGe~ 84 (110)
|+.|+|||++.
T Consensus 96 GR~R~YFA~~~ 106 (162)
T 3fmt_A 96 GRTRVYFAADE 106 (162)
T ss_dssp CSSCCCEESSH
T ss_pred CCCceeecCCH
Confidence 56799999864
Done!