RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7655
         (110 letters)



>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
           demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 449

 Score = 57.6 bits (137), Expect = 1e-11
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 29  EPARILTTSWGSNKHFRGSY-SIRTLTTERLNTSAAELGAPVSNGMGKPVLLFAGEATSE 87
                    W ++   R           + +        +        P L FAGE T  
Sbjct: 364 VQFVPPLPEWKTSAVQRMVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIR 423

Query: 88  DQYATVNGAIETGWREADRILK 109
           +  ATV+GA+ +G REA RI  
Sbjct: 424 NYPATVHGALLSGLREAGRIAD 445


>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1,
           LSD1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score = 46.0 bits (108), Expect = 2e-08
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 1   MESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYS 49
           ME+++D  +    +   +   G+   +P+P   + + W ++   RGSYS
Sbjct: 61  MENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADPWARGSYS 108


>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays)
           [TaxId: 4577]}
          Length = 112

 Score = 45.2 bits (106), Expect = 6e-08
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 1   MESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYS 49
           +E  +D+Q + E+M+  R     K  +P+   IL   W S++ ++G++S
Sbjct: 64  IEQQSDEQTKAEIMQVLRKMFPGK-DVPDATDILVPRWWSDRFYKGTFS 111


>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 112

 Score = 42.5 bits (99), Expect = 6e-07
 Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 1   MESLTDKQVQIEVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYS 49
           +  LT ++   ++ + +           EP      +W   ++  G Y+
Sbjct: 63  LARLTKEERLKKLCELYAKV-LGSLEALEPVHYEEKNWCEEQYSGGCYT 110


>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper
           (Calloselasma rhodostoma) [TaxId: 8717]}
          Length = 113

 Score = 37.1 bits (85), Expect = 5e-05
 Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 2/51 (3%)

Query: 1   MESLTDKQVQIEVMKAFRFFLG--AKYTIPEPARILTTSWGSNKHFRGSYS 49
            ++L  K     V            K         +   W  +K+  G  +
Sbjct: 62  FQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGIT 112


>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
           mays) [TaxId: 4577]}
          Length = 347

 Score = 36.1 bits (81), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 76  PVLLFAGEATSEDQYATVNGAIETGWREADRIL 108
             + F GE TSE     V+GA  +G   A+ ++
Sbjct: 307 GRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILI 339


>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 30.5 bits (67), Expect = 0.035
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 78  LLFAGEATSEDQYATVNGAIETGWREADRILK 109
           + FAG  T+      + GA+E G R A  IL 
Sbjct: 304 IYFAGTETATHWSGYMEGAVEAGERAAREILH 335


>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
           pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
          Length = 370

 Score = 28.6 bits (62), Expect = 0.15
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 47  SYSIRTLTTERLNTSAA-ELGAPVSNGMGKPVLLFAGEATSEDQYATVNGAIETGWREAD 105
           ++++R++ T       +  L A          + FAGE T++  +  ++  I++G R A 
Sbjct: 310 AHALRSVFTPYQFQHFSDPLTASQGR------IYFAGEYTAQA-HGWIDSTIKSGLRAAR 362

Query: 106 RI 107
            +
Sbjct: 363 DV 364


>d2o34a1 d.96.2.2 (A:1-248) Hypothetical protein DVU1097
           {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 248

 Score = 23.3 bits (50), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 60  TSAAELGAPVSNGMGKPVLLFAGEATSEDQYAT 92
            S+A +G  +S G G   ++ A +A+  D  AT
Sbjct: 168 GSSARIGHSLSLGDGDLAVVRARDASLADAAAT 200


>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
           chain {Escherichia coli [TaxId: 562]}
          Length = 1074

 Score = 23.6 bits (50), Expect = 8.2
 Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 6/98 (6%)

Query: 12  EVMKAFRFFLGAKYTIPEPARILTTSWGSNKHFRGSYSIRTLT-----TERLNTSAAELG 66
           ++++  R F          + I+    G N  +    + R L         +  S     
Sbjct: 517 QIIRIAREFADNADKTHGRSMIIV-GAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWA 575

Query: 67  APVSNGMGKPVLLFAGEATSEDQYATVNGAIETGWREA 104
             V     +P   +   A + D          T +   
Sbjct: 576 HYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYN 613


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 376,111
Number of extensions: 14094
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 10
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)