BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7658
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
+Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK V+
Sbjct: 105 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 164
Query: 63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 165 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
+Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK V+
Sbjct: 105 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 164
Query: 63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 165 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
+Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK V+
Sbjct: 106 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 165
Query: 63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 166 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 216
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
+Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK V+
Sbjct: 115 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 174
Query: 63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 175 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 225
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
+Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK V+
Sbjct: 102 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 161
Query: 63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 162 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 212
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
+Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK V+
Sbjct: 105 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 164
Query: 63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 165 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
+Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK V+
Sbjct: 106 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 165
Query: 63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 166 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 216
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
+Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK V+
Sbjct: 115 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 174
Query: 63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 175 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 225
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
+Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK V+
Sbjct: 106 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 165
Query: 63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 166 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 216
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
+Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK V+
Sbjct: 105 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 164
Query: 63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 165 RYLTESYGTGQD-IYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
+Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK V+
Sbjct: 103 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 162
Query: 63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 163 RYLTESYGTGQD-IYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 213
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
+Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK V+
Sbjct: 105 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 164
Query: 63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 165 RYLTESYGTGQD-IYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 115 bits (287), Expect = 8e-27, Method: Composition-based stats.
Identities = 52/113 (46%), Positives = 78/113 (69%), Gaps = 2/113 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+YG D++ Y GQ +G + PH+FA+ AY +A NQ +++SGESG+GKT K M
Sbjct: 118 IYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177
Query: 63 QYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+Y A V+ S S + E++L ++P++ES GNAKT RNDNSSRFGK++++ F +
Sbjct: 178 RYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDK 230
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 115 bits (287), Expect = 9e-27, Method: Composition-based stats.
Identities = 52/113 (46%), Positives = 78/113 (69%), Gaps = 2/113 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+YG D++ Y GQ +G + PH+FA+ AY +A NQ +++SGESG+GKT K M
Sbjct: 118 IYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177
Query: 63 QYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
+Y A V+ S S + E++L ++P++ES GNAKT RNDNSSRFGK++++ F +
Sbjct: 178 RYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDK 230
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 145 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 204
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 205 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 258
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 133 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 192
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 133 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 192
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 145 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 204
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 205 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 258
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 145 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 204
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 205 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 258
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 145 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 204
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 205 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 258
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 133 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 192
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 133 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 192
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 133 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 192
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 133 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 192
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+N+SRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNASRFGKFIEIQF 247
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 2/111 (1%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATS-GNQVVVISGESGSGKTECTKLVM 62
+YG D++ Y GQ +G + PH+FA+ AY +A NQ +++SGESG+GKT K M
Sbjct: 118 IYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177
Query: 63 QYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
+Y A V+ S S + E++L ++P++ES GNAKT RNDNSSRFGK++++ F
Sbjct: 178 RYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 228
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 112 bits (280), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 82/114 (71%), Gaps = 5/114 (4%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +MV ++G+ ++PH+FAI AY S L NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63 QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSS FGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQF 247
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 84/114 (73%), Gaps = 4/114 (3%)
Query: 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
++Y +K Y G+ + PH++A+ + AY ++ S NQ V+ISGESG+GKTE +K +
Sbjct: 55 NIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKI 114
Query: 62 MQYLAAV--NKSPS-NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
MQ+L V N+SP+ I++ +L+++PLLE+FGNAKT+RNDNSSRFGK++++ F
Sbjct: 115 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 168
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 84/114 (73%), Gaps = 4/114 (3%)
Query: 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
++Y +K Y G+ + PH++A+ + AY ++ S NQ V+ISGESG+GKTE +K +
Sbjct: 55 NIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKI 114
Query: 62 MQYLAAV--NKSPS-NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
MQ+L V N+SP+ I++ +L+++PLLE+FGNAKT+RNDNSSRFGK++++ F
Sbjct: 115 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 168
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 79/123 (64%), Gaps = 15/123 (12%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+Y ++ KY G+ + PHLF++ AY + T NQ +I+GESG+GKTE TK V+
Sbjct: 131 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTESTKKVI 190
Query: 63 QYLAAV-------------NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQ 109
Y A V N SNL +QI+EA+P+LE+FGNAKTVRN+NSSRFGKF++
Sbjct: 191 MYFARVAANLYKQKEEPVPNLRASNL-EDQIIEANPVLEAFGNAKTVRNNNSSRFGKFIR 249
Query: 110 VHF 112
+HF
Sbjct: 250 IHF 252
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 79/120 (65%), Gaps = 11/120 (9%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+Y ++V Y G+ PH+F+I AY + T NQ ++I+GESG+GKT TK V+
Sbjct: 133 VYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVI 192
Query: 63 QYLAAV---------NKSPSN-LITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QY A + ++SP + +QI++A+P LE+FGNAKTVRNDNSSRFGKF+++HF
Sbjct: 193 QYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHF 252
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 75/121 (61%), Gaps = 12/121 (9%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+Y +V Y G+ PH+F+I AY + T NQ ++I+GESG+GKT TK V+
Sbjct: 131 VYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVI 190
Query: 63 QYLAAVNKSPSN-----------LITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
QY A + S + +QI+ A+PLLE+FGNAKTVRNDNSSRFGKF+++H
Sbjct: 191 QYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIH 250
Query: 112 F 112
F
Sbjct: 251 F 251
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 79/123 (64%), Gaps = 14/123 (11%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+Y ++ KY G+ + PHLF++ AY + T NQ +I+GESG+GKTE TK V+
Sbjct: 131 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190
Query: 63 QYLA----AVNKSPSNL---------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQ 109
YLA AV K S + +QI++A+P+LE++GNAKT RN+NSSRFGKF++
Sbjct: 191 MYLAKVACAVKKKTSEEEEADQKKGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIR 250
Query: 110 VHF 112
+HF
Sbjct: 251 IHF 253
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 104 bits (260), Expect = 1e-23, Method: Composition-based stats.
Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 9/118 (7%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +V+ Y G+ + PH++A+ AY S L +Q ++ +GESG+GKTE TK V+
Sbjct: 108 IYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVI 167
Query: 63 QYLAAVNKSPSNL--------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
QYLA V SP + Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF++++F
Sbjct: 168 QYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 225
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 12/121 (9%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+Y ++ KY G+ + PHLF++ AY + T NQ +I+GESG+GKTE TK V+
Sbjct: 131 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190
Query: 63 QYLA----AVNKSPSNL-------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
YLA AV K + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++H
Sbjct: 191 MYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIH 250
Query: 112 F 112
F
Sbjct: 251 F 251
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 12/121 (9%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+Y ++ KY G+ + PHLF++ AY + T NQ +I+GESG+GKTE TK V+
Sbjct: 126 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 185
Query: 63 QYLA----AVNKSPSNL-------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
YLA AV K + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++H
Sbjct: 186 MYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIH 245
Query: 112 F 112
F
Sbjct: 246 F 246
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 12/121 (9%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+Y ++ KY G+ + PHLF++ AY + T NQ +I+GESG+GKTE TK V+
Sbjct: 131 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190
Query: 63 QYLA----AVNKSPSNL-------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
YLA AV K + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++H
Sbjct: 191 MYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIH 250
Query: 112 F 112
F
Sbjct: 251 F 251
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 12/121 (9%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+Y ++ KY G+ + PHLF++ AY + T NQ +I+GESG+GKTE TK V+
Sbjct: 131 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190
Query: 63 QYLA----AVNKSPSNL-------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
YLA AV K + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++H
Sbjct: 191 MYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIH 250
Query: 112 F 112
F
Sbjct: 251 F 251
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 12/121 (9%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+Y ++ KY G+ + PHLF++ AY + T NQ +I+GESG+GKTE TK V+
Sbjct: 127 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 186
Query: 63 QYLA----AVNKSPSNL-------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
YLA AV K + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++H
Sbjct: 187 MYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIH 246
Query: 112 F 112
F
Sbjct: 247 F 247
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y ++ Y+G+ + PH++AI AY S L +Q ++ +GESG+GKTE TK V+
Sbjct: 131 IYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190
Query: 63 QYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKF 107
QYLA V S PS + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF
Sbjct: 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKF 250
Query: 108 LQVHF 112
++++F
Sbjct: 251 IRINF 255
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y ++ Y+G+ + PH++AI AY S L +Q ++ +GESG+GKTE TK V+
Sbjct: 131 IYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190
Query: 63 QYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKF 107
QYLA V S PS + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF
Sbjct: 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKF 250
Query: 108 LQVHF 112
++++F
Sbjct: 251 IRINF 255
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 77/126 (61%), Gaps = 17/126 (13%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYS-ALATSGNQVVVISGESGSGKTECTKLVM 62
+Y +V KY G+ + PHLF+I AY L NQ ++I+GESG+GKTE TK V+
Sbjct: 131 IYTQGLVDKYRGKRRAEMPPHLFSIADNAYQYMLQDRENQSMLITGESGAGKTENTKKVI 190
Query: 63 QYLAAVNKSPSNL----------------ITEQILEASPLLESFGNAKTVRNDNSSRFGK 106
QY A V S + + +QI++ +P+LE++GNAKT RN+NSSRFGK
Sbjct: 191 QYFALVAASLAGKKDKKEEEKKKDEKKGTLEDQIVQCNPVLEAYGNAKTTRNNNSSRFGK 250
Query: 107 FLQVHF 112
F+++HF
Sbjct: 251 FIRIHF 256
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 102 bits (254), Expect = 6e-23, Method: Composition-based stats.
Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y ++ Y+G+ + PH++AI AY S L +Q ++ +GESG+GKTE TK V+
Sbjct: 131 IYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190
Query: 63 QYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKF 107
QYLA V S PS + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF
Sbjct: 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKF 250
Query: 108 LQVHF 112
++++F
Sbjct: 251 IRINF 255
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 102 bits (254), Expect = 6e-23, Method: Composition-based stats.
Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y ++ Y+G+ + PH++AI AY S L +Q ++ +GESG+GKTE TK V+
Sbjct: 131 IYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190
Query: 63 QYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKF 107
QYLA V S PS + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF
Sbjct: 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKF 250
Query: 108 LQVHF 112
++++F
Sbjct: 251 IRINF 255
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 102 bits (253), Expect = 7e-23, Method: Composition-based stats.
Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y ++ Y+G+ + PH++AI AY S L +Q ++ +GESG+GKTE TK V+
Sbjct: 131 IYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190
Query: 63 QYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKF 107
QYLA V S PS + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF
Sbjct: 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKF 250
Query: 108 LQVHF 112
++++F
Sbjct: 251 IRINF 255
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 100 bits (250), Expect = 1e-22, Method: Composition-based stats.
Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
+Y ++ Y+G+ + PH++AI AY S L +Q ++ +GESG+GKTE TK V+
Sbjct: 131 IYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190
Query: 63 QYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKF 107
QYLA V S PS + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF
Sbjct: 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKF 250
Query: 108 LQVHF 112
++++F
Sbjct: 251 IRINF 255
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 12/121 (9%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+Y +V Y G+ PH+F+I AY + T NQ ++I+GESG+GKT T V+
Sbjct: 134 VYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTXRVI 193
Query: 63 QYLAAVNKSPSN-----------LITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
QY A + S + +QI+ A+PLLE+FGNA TVRNDNSSRFG F+++H
Sbjct: 194 QYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIH 253
Query: 112 F 112
F
Sbjct: 254 F 254
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 12/121 (9%)
Query: 4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
+Y +V Y G+ PH+F+I AY + T NQ ++I+GESG+GKT T V+
Sbjct: 131 VYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTXRVI 190
Query: 63 QYLAAVNKSPSN-----------LITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
QY A + S + +QI+ A+PLLE+FGNA TVRNDNSSRFG F+++H
Sbjct: 191 QYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIH 250
Query: 112 F 112
F
Sbjct: 251 F 251
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 42 QVVVISGESGSGKTECTKLVMQ 63
+V+V++GE+GSGKT K +MQ
Sbjct: 176 RVIVVAGETGSGKTTLMKALMQ 197
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From
Mycobacterium Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From
Mycobacterium Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 19 GTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAA 67
G + P F + + AY T G+ VV I+G G+G+T V +LAA
Sbjct: 24 GAMDPE-FRVINLAYDDNGT-GDPVVFIAGRGGAGRTWHPHQVPAFLAA 70
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 36 LATSGNQVVVISGESGSGKTECTKLVMQY 64
L+ +V+ I G SGSGK+ TKL+ ++
Sbjct: 26 LSIKQGEVIGIVGRSGSGKSTLTKLIQRF 54
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
Length = 247
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 36 LATSGNQVVVISGESGSGKTECTKLVMQY 64
L+ +V+ I G SGSGK+ TKL+ ++
Sbjct: 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 36 LATSGNQVVVISGESGSGKTECTKLVMQY 64
L+ +V+ I G SGSGK+ TKL+ ++
Sbjct: 24 LSIKQGEVIGIVGRSGSGKSTLTKLIQRF 52
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 36 LATSGNQVVVISGESGSGKTECTKLVMQY 64
L+ +V+ I G SGSGK+ TKL+ ++
Sbjct: 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
Length = 241
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 36 LATSGNQVVVISGESGSGKTECTKLVMQY 64
L+ +V+ I G SGSGK+ TKL+ ++
Sbjct: 24 LSIKQGEVIGIVGRSGSGKSTLTKLIQRF 52
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
Length = 247
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 36 LATSGNQVVVISGESGSGKTECTKLVMQY 64
L+ +V+ I G SGSGK+ TKL+ ++
Sbjct: 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 17/46 (36%)
Query: 10 VKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKT 55
VKK+E +IL A S N VV+I G +G GKT
Sbjct: 62 VKKFESEILE-----------------AISQNSVVIIRGATGCGKT 90
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 30 SAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQIL 81
SA +A N V++ G +GSGKT K +M+++ + S TE+I+
Sbjct: 162 SAIKDGIAIGKN--VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV 211
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 36 LATSGNQVVVISGESGSGKTECTKLVMQY 64
L+ +V+ I G +GSGK+ TKL+ ++
Sbjct: 26 LSIKQGEVIGIVGRAGSGKSTLTKLIQRF 54
>pdb|4DQK|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3
pdb|4DQK|B Chain B, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3
Length = 391
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 17 ILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70
+L ++ P ++I S+ + V V+SGE+ SG E + YLA + +
Sbjct: 163 LLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQE 216
>pdb|4DQL|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3 In Complex With Nadp+
pdb|4DQL|B Chain B, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3 In Complex With Nadp+
Length = 393
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 17 ILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70
+L ++ P ++I S+ + V V+SGE+ SG E + YLA + +
Sbjct: 165 LLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQE 218
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 41 NQVVVISGESGSGKT 55
NQ++V GE+GSGKT
Sbjct: 109 NQIMVFVGETGSGKT 123
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 41 NQVVVISGESGSGKT 55
NQ++V GE+GSGKT
Sbjct: 109 NQIMVFVGETGSGKT 123
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 39 SGNQVVVISGESGSGKTECTKLV 61
S ++++V+ GE+G+GKT KL+
Sbjct: 376 SDSEILVMMGENGTGKTTLIKLL 398
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 28 IGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQIL 81
IG+A L G++V ++S + G G+ +L L + + + NL E IL
Sbjct: 12 IGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAA-VNLAGENIL 64
>pdb|3H0K|A Chain A, Crystal Structure Of An Adenylated Kinase Related
Protein From Sulfolobus Solfataricus To 3.25a
pdb|3H0K|B Chain B, Crystal Structure Of An Adenylated Kinase Related
Protein From Sulfolobus Solfataricus To 3.25a
Length = 178
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 42 QVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRN 98
+V++I+G GSGK+E KL+ + A V + +EA P AK +R
Sbjct: 1 KVILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLRE 57
>pdb|3LW7|A Chain A, The Crystal Structure Of An Adenylate Kinase-Related
Protein Bound To Amp From Sulfolobus Solfataricus To
2.3a
pdb|3LW7|B Chain B, The Crystal Structure Of An Adenylate Kinase-Related
Protein Bound To Amp From Sulfolobus Solfataricus To
2.3a
Length = 179
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 42 QVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRN 98
+V++I+G GSGK+E KL+ + A V + +EA P AK +R
Sbjct: 2 KVILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLRE 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,123,343
Number of Sequences: 62578
Number of extensions: 108995
Number of successful extensions: 549
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 91
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)