Query psy7658
Match_columns 114
No_of_seqs 153 out of 1277
Neff 8.9
Searched_HMMs 46136
Date Sat Aug 17 00:04:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 3E-36 6.4E-41 237.1 10.4 114 1-114 141-257 (821)
2 cd01380 MYSc_type_V Myosin mot 100.0 3.9E-36 8.5E-41 233.9 10.3 114 1-114 45-164 (691)
3 cd01377 MYSc_type_II Myosin mo 100.0 6.7E-36 1.5E-40 232.7 10.2 114 1-114 50-173 (693)
4 COG5022 Myosin heavy chain [Cy 100.0 8.1E-36 1.8E-40 238.9 9.6 113 2-114 112-228 (1463)
5 cd01381 MYSc_type_VII Myosin m 100.0 1.2E-35 2.6E-40 230.5 9.5 113 1-114 45-158 (671)
6 cd01386 MYSc_type_XVIII Myosin 100.0 2.3E-35 4.9E-40 231.2 10.3 114 1-114 45-160 (767)
7 cd01385 MYSc_type_IX Myosin mo 100.0 2.8E-35 6E-40 229.1 10.2 114 1-114 52-169 (692)
8 cd01387 MYSc_type_XV Myosin mo 100.0 2.8E-35 6E-40 228.7 10.0 113 1-113 46-159 (677)
9 cd01379 MYSc_type_III Myosin m 100.0 5.6E-35 1.2E-39 226.1 10.2 114 1-114 45-159 (653)
10 cd01378 MYSc_type_I Myosin mot 100.0 6.1E-35 1.3E-39 226.8 9.9 114 1-114 45-161 (674)
11 cd01384 MYSc_type_XI Myosin mo 100.0 6.9E-35 1.5E-39 226.3 9.9 114 1-114 46-164 (674)
12 cd01382 MYSc_type_VI Myosin mo 100.0 1.2E-34 2.5E-39 226.3 10.4 113 1-114 49-163 (717)
13 cd00124 MYSc Myosin motor doma 100.0 2.2E-34 4.7E-39 224.3 10.7 114 1-114 45-159 (679)
14 smart00242 MYSc Myosin. Large 100.0 2.8E-34 6E-39 223.5 9.9 114 1-114 51-167 (677)
15 KOG0161|consensus 100.0 2.3E-34 4.9E-39 237.5 8.5 114 1-114 127-247 (1930)
16 KOG0164|consensus 100.0 6.5E-34 1.4E-38 216.6 8.2 113 1-113 53-170 (1001)
17 cd01383 MYSc_type_VIII Myosin 100.0 1.4E-33 3E-38 219.1 9.9 110 1-114 53-163 (677)
18 PF00063 Myosin_head: Myosin h 100.0 1E-33 2.2E-38 221.0 7.2 114 1-114 44-162 (689)
19 KOG0163|consensus 100.0 3.7E-33 7.9E-38 213.7 9.4 111 3-114 105-216 (1259)
20 KOG0162|consensus 100.0 3.5E-32 7.6E-37 207.7 9.1 114 1-114 63-179 (1106)
21 KOG0160|consensus 99.9 6.3E-26 1.4E-30 177.7 4.0 111 2-113 54-167 (862)
22 KOG4229|consensus 99.9 8.3E-24 1.8E-28 169.0 6.9 113 1-113 106-220 (1062)
23 COG1116 TauB ABC-type nitrate/ 98.8 3.5E-09 7.7E-14 73.9 2.8 36 36-71 24-59 (248)
24 COG3839 MalK ABC-type sugar tr 98.7 7.8E-09 1.7E-13 75.4 2.7 37 36-72 24-60 (338)
25 COG3842 PotA ABC-type spermidi 98.7 8.1E-09 1.7E-13 75.7 2.6 37 36-72 26-62 (352)
26 COG1120 FepC ABC-type cobalami 98.7 1.3E-08 2.8E-13 71.8 2.6 37 36-72 23-59 (258)
27 COG1124 DppF ABC-type dipeptid 98.6 2.2E-08 4.8E-13 69.8 2.7 37 36-72 28-64 (252)
28 COG1126 GlnQ ABC-type polar am 98.6 2.6E-08 5.7E-13 68.5 2.9 37 36-72 23-59 (240)
29 COG1136 SalX ABC-type antimicr 98.6 3.4E-08 7.3E-13 68.5 2.9 36 36-71 26-61 (226)
30 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.6 3.3E-08 7.2E-13 67.7 2.6 37 36-72 25-61 (218)
31 COG4608 AppF ABC-type oligopep 98.6 5.4E-08 1.2E-12 68.8 3.7 56 36-91 34-97 (268)
32 TIGR01166 cbiO cobalt transpor 98.6 3.6E-08 7.8E-13 66.3 2.6 37 36-72 13-49 (190)
33 cd03225 ABC_cobalt_CbiO_domain 98.6 3.9E-08 8.4E-13 67.1 2.7 37 36-72 22-58 (211)
34 COG1121 ZnuC ABC-type Mn/Zn tr 98.6 3.5E-08 7.6E-13 69.4 2.4 41 32-72 19-61 (254)
35 PRK15177 Vi polysaccharide exp 98.6 5.1E-08 1.1E-12 66.9 3.0 37 36-72 8-44 (213)
36 cd03226 ABC_cobalt_CbiO_domain 98.6 4.3E-08 9.2E-13 66.7 2.6 37 36-72 21-57 (205)
37 cd03259 ABC_Carb_Solutes_like 98.5 4.4E-08 9.5E-13 66.9 2.6 36 36-71 21-56 (213)
38 TIGR02673 FtsE cell division A 98.5 4.7E-08 1E-12 66.8 2.7 36 36-71 23-58 (214)
39 TIGR00960 3a0501s02 Type II (G 98.5 4.4E-08 9.5E-13 67.1 2.5 37 36-72 24-60 (216)
40 cd03261 ABC_Org_Solvent_Resist 98.5 4.8E-08 1E-12 67.7 2.4 36 36-71 21-56 (235)
41 cd03262 ABC_HisP_GlnQ_permease 98.5 6.1E-08 1.3E-12 66.1 2.8 36 36-71 21-56 (213)
42 cd03235 ABC_Metallic_Cations A 98.5 5.1E-08 1.1E-12 66.6 2.4 37 36-72 20-56 (213)
43 TIGR03608 L_ocin_972_ABC putat 98.5 5.6E-08 1.2E-12 66.0 2.6 36 36-71 19-54 (206)
44 cd03293 ABC_NrtD_SsuB_transpor 98.5 5.1E-08 1.1E-12 67.0 2.4 36 36-71 25-60 (220)
45 cd03265 ABC_DrrA DrrA is the A 98.5 5.4E-08 1.2E-12 66.8 2.5 36 36-71 21-56 (220)
46 cd03292 ABC_FtsE_transporter F 98.5 5.1E-08 1.1E-12 66.5 2.4 36 36-71 22-57 (214)
47 cd03219 ABC_Mj1267_LivG_branch 98.5 5.2E-08 1.1E-12 67.5 2.4 36 36-71 21-56 (236)
48 COG4555 NatA ABC-type Na+ tran 98.5 9.1E-08 2E-12 65.5 3.4 43 31-73 16-60 (245)
49 TIGR02315 ABC_phnC phosphonate 98.5 6E-08 1.3E-12 67.4 2.6 37 36-72 23-59 (243)
50 cd03257 ABC_NikE_OppD_transpor 98.5 6.2E-08 1.3E-12 66.7 2.7 36 36-71 26-61 (228)
51 cd03269 ABC_putative_ATPase Th 98.5 5.8E-08 1.3E-12 66.2 2.4 37 36-72 21-57 (210)
52 COG4619 ABC-type uncharacteriz 98.5 8.4E-08 1.8E-12 64.1 3.0 37 36-72 24-60 (223)
53 cd03258 ABC_MetN_methionine_tr 98.5 7.1E-08 1.5E-12 66.7 2.8 37 36-72 26-62 (233)
54 cd03218 ABC_YhbG The ABC trans 98.5 6.8E-08 1.5E-12 66.7 2.7 36 36-71 21-56 (232)
55 cd03224 ABC_TM1139_LivF_branch 98.5 6.3E-08 1.4E-12 66.4 2.5 37 36-72 21-57 (222)
56 cd03260 ABC_PstB_phosphate_tra 98.5 8.3E-08 1.8E-12 66.2 3.1 36 36-71 21-61 (227)
57 TIGR02211 LolD_lipo_ex lipopro 98.5 7E-08 1.5E-12 66.2 2.6 37 36-72 26-62 (221)
58 cd03256 ABC_PhnC_transporter A 98.5 7.3E-08 1.6E-12 66.9 2.7 36 36-71 22-57 (241)
59 COG1118 CysA ABC-type sulfate/ 98.5 6.8E-08 1.5E-12 69.5 2.6 37 36-72 23-59 (345)
60 cd03222 ABC_RNaseL_inhibitor T 98.5 7.6E-08 1.6E-12 64.6 2.7 37 36-72 20-56 (177)
61 PRK10584 putative ABC transpor 98.5 7.6E-08 1.6E-12 66.4 2.7 36 36-71 31-66 (228)
62 cd03263 ABC_subfamily_A The AB 98.5 7.4E-08 1.6E-12 66.0 2.6 37 36-72 23-59 (220)
63 PRK11248 tauB taurine transpor 98.5 7.5E-08 1.6E-12 67.8 2.7 36 36-71 22-57 (255)
64 cd03301 ABC_MalK_N The N-termi 98.5 7.3E-08 1.6E-12 65.8 2.5 36 36-71 21-56 (213)
65 cd03296 ABC_CysA_sulfate_impor 98.5 7.3E-08 1.6E-12 67.0 2.5 36 36-71 23-58 (239)
66 TIGR01188 drrA daunorubicin re 98.5 7E-08 1.5E-12 69.5 2.4 37 36-72 14-50 (302)
67 COG4525 TauB ABC-type taurine 98.5 8.9E-08 1.9E-12 65.4 2.8 41 32-72 20-62 (259)
68 TIGR03410 urea_trans_UrtE urea 98.5 7.8E-08 1.7E-12 66.4 2.6 37 36-72 21-57 (230)
69 cd03223 ABCD_peroxisomal_ALDP 98.5 9.5E-08 2.1E-12 63.2 2.8 37 36-72 22-58 (166)
70 PRK11629 lolD lipoprotein tran 98.5 7.3E-08 1.6E-12 66.8 2.4 36 36-71 30-65 (233)
71 cd03229 ABC_Class3 This class 98.5 8.3E-08 1.8E-12 64.1 2.5 37 36-72 21-57 (178)
72 TIGR03864 PQQ_ABC_ATP ABC tran 98.5 7.7E-08 1.7E-12 66.8 2.5 37 36-72 22-58 (236)
73 PRK10247 putative ABC transpor 98.5 9.7E-08 2.1E-12 65.9 2.9 37 36-72 28-64 (225)
74 PRK13541 cytochrome c biogenes 98.5 8.7E-08 1.9E-12 64.8 2.6 38 35-72 20-57 (195)
75 TIGR01184 ntrCD nitrate transp 98.5 8.8E-08 1.9E-12 66.4 2.7 37 36-72 6-42 (230)
76 cd03298 ABC_ThiQ_thiamine_tran 98.5 8.6E-08 1.9E-12 65.4 2.6 37 35-71 18-54 (211)
77 cd03266 ABC_NatA_sodium_export 98.5 8.9E-08 1.9E-12 65.6 2.7 37 36-72 26-62 (218)
78 PRK13538 cytochrome c biogenes 98.5 9E-08 2E-12 65.1 2.6 37 36-72 22-58 (204)
79 COG1125 OpuBA ABC-type proline 98.5 9.7E-08 2.1E-12 67.4 2.7 37 36-72 22-58 (309)
80 PRK10908 cell division protein 98.5 8.3E-08 1.8E-12 66.0 2.4 37 36-72 23-59 (222)
81 cd03216 ABC_Carb_Monos_I This 98.5 9E-08 2E-12 63.1 2.4 37 36-72 21-57 (163)
82 TIGR02324 CP_lyasePhnL phospho 98.5 1E-07 2.2E-12 65.6 2.8 36 36-71 29-64 (224)
83 PRK11247 ssuB aliphatic sulfon 98.5 8.9E-08 1.9E-12 67.6 2.5 37 36-72 33-69 (257)
84 PF00005 ABC_tran: ABC transpo 98.5 6.2E-08 1.3E-12 61.6 1.5 37 36-72 6-42 (137)
85 COG3840 ThiQ ABC-type thiamine 98.5 1.3E-07 2.8E-12 63.9 3.1 37 36-72 20-56 (231)
86 PRK13540 cytochrome c biogenes 98.5 1.1E-07 2.3E-12 64.6 2.7 36 36-71 22-57 (200)
87 PRK13539 cytochrome c biogenes 98.5 1.1E-07 2.3E-12 64.9 2.7 37 36-72 23-59 (207)
88 cd03268 ABC_BcrA_bacitracin_re 98.5 9.9E-08 2.1E-12 65.0 2.4 36 36-71 21-56 (208)
89 cd03246 ABCC_Protease_Secretio 98.5 1.4E-07 3.1E-12 62.6 3.1 37 36-72 23-59 (173)
90 cd03295 ABC_OpuCA_Osmoprotecti 98.5 1.1E-07 2.5E-12 66.1 2.8 36 36-71 22-57 (242)
91 COG1131 CcmA ABC-type multidru 98.5 9.6E-08 2.1E-12 68.7 2.4 37 36-72 26-62 (293)
92 cd03228 ABCC_MRP_Like The MRP 98.5 1.3E-07 2.8E-12 62.7 2.9 37 36-72 23-59 (171)
93 PRK14250 phosphate ABC transpo 98.4 1.1E-07 2.5E-12 66.2 2.6 37 36-72 24-60 (241)
94 PRK10895 lipopolysaccharide AB 98.4 1.2E-07 2.5E-12 66.0 2.7 36 36-71 24-59 (241)
95 cd03254 ABCC_Glucan_exporter_l 98.4 1.3E-07 2.7E-12 65.3 2.8 37 36-72 24-60 (229)
96 TIGR01288 nodI ATP-binding ABC 98.4 1E-07 2.3E-12 68.6 2.4 37 36-72 25-61 (303)
97 cd03231 ABC_CcmA_heme_exporter 98.4 1.2E-07 2.6E-12 64.4 2.6 37 36-72 21-57 (201)
98 PRK09493 glnQ glutamine ABC tr 98.4 1.1E-07 2.4E-12 66.1 2.5 36 36-71 22-57 (240)
99 cd03247 ABCC_cytochrome_bd The 98.4 1.4E-07 3E-12 62.9 2.8 37 36-72 23-59 (178)
100 PRK13645 cbiO cobalt transport 98.4 1.2E-07 2.6E-12 67.8 2.7 36 36-71 32-67 (289)
101 COG1127 Ttg2A ABC-type transpo 98.4 1.2E-07 2.7E-12 66.2 2.6 37 36-72 29-65 (263)
102 cd03230 ABC_DR_subfamily_A Thi 98.4 1.2E-07 2.6E-12 63.0 2.5 37 36-72 21-57 (173)
103 TIGR01189 ccmA heme ABC export 98.4 1.4E-07 2.9E-12 63.9 2.7 36 36-71 21-56 (198)
104 cd03215 ABC_Carb_Monos_II This 98.4 1.3E-07 2.7E-12 63.4 2.5 37 36-72 21-57 (182)
105 PRK13537 nodulation ABC transp 98.4 1.1E-07 2.4E-12 68.7 2.4 36 36-71 28-63 (306)
106 PRK11124 artP arginine transpo 98.4 1.2E-07 2.7E-12 65.9 2.5 36 36-71 23-58 (242)
107 PRK13638 cbiO cobalt transport 98.4 1.2E-07 2.5E-12 67.3 2.4 36 36-71 22-57 (271)
108 cd03267 ABC_NatA_like Similar 98.4 1.2E-07 2.7E-12 65.9 2.4 37 36-72 42-78 (236)
109 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.4 1.4E-07 3.1E-12 65.4 2.8 37 36-72 24-60 (238)
110 cd03250 ABCC_MRP_domain1 Domai 98.4 1.5E-07 3.3E-12 63.9 2.8 37 36-72 26-62 (204)
111 PRK15112 antimicrobial peptide 98.4 1.4E-07 3E-12 66.8 2.7 37 36-72 34-70 (267)
112 COG1117 PstB ABC-type phosphat 98.4 3.1E-07 6.8E-12 63.3 4.3 47 23-69 13-61 (253)
113 cd03294 ABC_Pro_Gly_Bertaine T 98.4 1.3E-07 2.8E-12 67.0 2.5 36 36-71 45-80 (269)
114 TIGR02323 CP_lyasePhnK phospho 98.4 1.4E-07 3E-12 66.1 2.6 37 36-72 24-60 (253)
115 TIGR03005 ectoine_ehuA ectoine 98.4 1.3E-07 2.8E-12 66.3 2.5 36 36-71 21-56 (252)
116 PRK11701 phnK phosphonate C-P 98.4 1.4E-07 3.1E-12 66.3 2.7 37 36-72 27-63 (258)
117 TIGR02769 nickel_nikE nickel i 98.4 1.4E-07 3E-12 66.7 2.6 37 36-72 32-68 (265)
118 PRK10771 thiQ thiamine transpo 98.4 1.4E-07 3.1E-12 65.3 2.6 38 35-72 19-56 (232)
119 cd03214 ABC_Iron-Siderophores_ 98.4 1.5E-07 3.3E-12 62.9 2.7 37 36-72 20-56 (180)
120 PRK15056 manganese/iron transp 98.4 1.3E-07 2.7E-12 67.1 2.4 37 36-72 28-64 (272)
121 PRK13649 cbiO cobalt transport 98.4 1.2E-07 2.7E-12 67.4 2.3 36 36-71 28-63 (280)
122 PRK13548 hmuV hemin importer A 98.4 1.5E-07 3.2E-12 66.4 2.6 37 36-72 23-59 (258)
123 cd03245 ABCC_bacteriocin_expor 98.4 1.7E-07 3.6E-12 64.3 2.9 37 36-72 25-61 (220)
124 cd03252 ABCC_Hemolysin The ABC 98.4 1.6E-07 3.5E-12 65.1 2.8 37 36-72 23-59 (237)
125 TIGR03411 urea_trans_UrtD urea 98.4 1.5E-07 3.3E-12 65.4 2.7 36 36-71 23-58 (242)
126 PRK13543 cytochrome c biogenes 98.4 1.5E-07 3.3E-12 64.5 2.6 37 36-72 32-68 (214)
127 COG2884 FtsE Predicted ATPase 98.4 2.6E-07 5.6E-12 62.7 3.6 48 25-72 10-59 (223)
128 cd03251 ABCC_MsbA MsbA is an e 98.4 1.7E-07 3.7E-12 64.8 2.8 37 36-72 23-59 (234)
129 TIGR01277 thiQ thiamine ABC tr 98.4 1.5E-07 3.3E-12 64.3 2.6 37 35-71 18-54 (213)
130 PRK13646 cbiO cobalt transport 98.4 1.5E-07 3.3E-12 67.3 2.6 36 36-71 28-63 (286)
131 PRK11264 putative amino-acid A 98.4 1.5E-07 3.3E-12 65.7 2.6 36 36-71 24-59 (250)
132 cd03369 ABCC_NFT1 Domain 2 of 98.4 1.9E-07 4.1E-12 63.6 3.0 37 36-72 29-65 (207)
133 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.4 1.4E-07 3E-12 61.1 2.2 37 36-72 21-57 (144)
134 PRK09544 znuC high-affinity zi 98.4 1.6E-07 3.5E-12 66.0 2.7 36 36-71 25-60 (251)
135 PRK11831 putative ABC transpor 98.4 1.5E-07 3.3E-12 66.6 2.6 36 36-71 28-63 (269)
136 COG0411 LivG ABC-type branched 98.4 2.1E-08 4.5E-13 69.9 -1.8 37 36-72 25-61 (250)
137 PRK11300 livG leucine/isoleuci 98.4 1.5E-07 3.3E-12 65.9 2.5 36 36-71 26-61 (255)
138 PRK13648 cbiO cobalt transport 98.4 1.6E-07 3.4E-12 66.5 2.6 36 36-71 30-65 (269)
139 cd03290 ABCC_SUR1_N The SUR do 98.4 1.8E-07 4E-12 64.1 2.9 37 36-72 22-58 (218)
140 TIGR03740 galliderm_ABC gallid 98.4 1.6E-07 3.4E-12 64.7 2.5 36 36-71 21-56 (223)
141 PRK13632 cbiO cobalt transport 98.4 1.7E-07 3.8E-12 66.4 2.7 36 36-71 30-65 (271)
142 cd03248 ABCC_TAP TAP, the Tran 98.4 1.9E-07 4E-12 64.4 2.8 36 36-71 35-70 (226)
143 COG3638 ABC-type phosphate/pho 98.4 1.5E-07 3.4E-12 65.5 2.4 48 25-72 12-61 (258)
144 PRK10575 iron-hydroxamate tran 98.4 1.6E-07 3.4E-12 66.4 2.5 37 36-72 32-68 (265)
145 cd03244 ABCC_MRP_domain2 Domai 98.4 1.9E-07 4.2E-12 64.0 2.9 37 36-72 25-61 (221)
146 PRK13637 cbiO cobalt transport 98.4 1.7E-07 3.6E-12 67.1 2.5 37 36-72 28-64 (287)
147 PRK13536 nodulation factor exp 98.4 1.8E-07 3.8E-12 68.6 2.7 36 36-71 62-97 (340)
148 PRK13639 cbiO cobalt transport 98.4 1.7E-07 3.7E-12 66.6 2.5 37 36-72 23-59 (275)
149 PRK10851 sulfate/thiosulfate t 98.4 1.7E-07 3.7E-12 69.0 2.6 37 36-72 23-59 (353)
150 COG1134 TagH ABC-type polysacc 98.4 2E-07 4.2E-12 65.1 2.7 38 36-73 48-85 (249)
151 TIGR02770 nickel_nikD nickel i 98.4 1.8E-07 4E-12 64.7 2.6 37 36-72 7-47 (230)
152 PRK11650 ugpC glycerol-3-phosp 98.4 1.5E-07 3.3E-12 69.4 2.3 37 36-72 25-61 (356)
153 TIGR00972 3a0107s01c2 phosphat 98.4 1.8E-07 3.9E-12 65.3 2.6 33 36-68 22-54 (247)
154 PRK13641 cbiO cobalt transport 98.4 1.7E-07 3.8E-12 67.0 2.5 36 36-71 28-63 (287)
155 cd03253 ABCC_ATM1_transporter 98.4 2.1E-07 4.6E-12 64.4 2.8 37 36-72 22-58 (236)
156 PRK11614 livF leucine/isoleuci 98.4 1.6E-07 3.6E-12 65.1 2.3 37 36-72 26-62 (237)
157 PRK13644 cbiO cobalt transport 98.4 1.9E-07 4.2E-12 66.4 2.7 37 36-72 23-59 (274)
158 PRK11308 dppF dipeptide transp 98.4 1.8E-07 4E-12 68.2 2.6 37 36-72 36-72 (327)
159 PRK13650 cbiO cobalt transport 98.4 1.9E-07 4.2E-12 66.5 2.7 37 36-72 28-64 (279)
160 PRK11153 metN DL-methionine tr 98.4 1.6E-07 3.5E-12 68.8 2.3 37 36-72 26-62 (343)
161 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.4 1.7E-07 3.6E-12 64.8 2.2 36 36-71 43-78 (224)
162 PRK11432 fbpC ferric transport 98.4 2E-07 4.3E-12 68.6 2.7 37 36-72 27-63 (351)
163 PRK13647 cbiO cobalt transport 98.4 2E-07 4.2E-12 66.3 2.5 37 36-72 26-62 (274)
164 TIGR03265 PhnT2 putative 2-ami 98.4 1.8E-07 3.9E-12 68.9 2.3 37 36-72 25-61 (353)
165 PRK13635 cbiO cobalt transport 98.4 2.2E-07 4.7E-12 66.3 2.7 37 36-72 28-64 (279)
166 PRK13652 cbiO cobalt transport 98.4 2E-07 4.4E-12 66.3 2.5 37 36-72 25-61 (277)
167 PRK13651 cobalt transporter AT 98.4 2.1E-07 4.5E-12 67.3 2.6 37 36-72 28-64 (305)
168 COG1123 ATPase components of v 98.4 2E-07 4.3E-12 71.6 2.5 37 36-72 312-348 (539)
169 cd03237 ABC_RNaseL_inhibitor_d 98.4 2.7E-07 6E-12 64.7 3.1 35 38-72 22-56 (246)
170 PRK15079 oligopeptide ABC tran 98.4 2.1E-07 4.4E-12 68.0 2.5 37 36-72 42-78 (331)
171 TIGR03522 GldA_ABC_ATP gliding 98.4 1.9E-07 4.1E-12 67.2 2.3 37 36-72 23-59 (301)
172 PRK10619 histidine/lysine/argi 98.4 2.1E-07 4.6E-12 65.4 2.5 36 36-71 26-61 (257)
173 PRK11000 maltose/maltodextrin 98.4 1.9E-07 4.1E-12 69.1 2.4 36 36-71 24-59 (369)
174 TIGR01978 sufC FeS assembly AT 98.4 2.3E-07 4.9E-12 64.5 2.6 36 36-71 21-58 (243)
175 PRK13546 teichoic acids export 98.4 2.1E-07 4.6E-12 66.0 2.5 36 36-71 45-80 (264)
176 PRK11231 fecE iron-dicitrate t 98.4 2.3E-07 4.9E-12 65.2 2.5 37 36-72 23-59 (255)
177 cd03264 ABC_drug_resistance_li 98.4 2E-07 4.4E-12 63.5 2.3 36 36-72 21-56 (211)
178 COG4133 CcmA ABC-type transpor 98.4 2.8E-07 6.2E-12 62.3 2.9 37 36-72 23-59 (209)
179 PRK10253 iron-enterobactin tra 98.4 2.2E-07 4.8E-12 65.6 2.5 37 36-72 28-64 (265)
180 cd03234 ABCG_White The White s 98.4 2.3E-07 5E-12 64.0 2.5 36 36-71 28-66 (226)
181 PRK11144 modC molybdate transp 98.4 2.2E-07 4.7E-12 68.4 2.4 37 35-71 18-54 (352)
182 TIGR00968 3a0106s01 sulfate AB 98.4 2.5E-07 5.5E-12 64.3 2.6 36 36-71 21-56 (237)
183 cd03297 ABC_ModC_molybdenum_tr 98.4 2.4E-07 5.2E-12 63.4 2.5 36 35-71 18-53 (214)
184 TIGR03873 F420-0_ABC_ATP propo 98.4 2.4E-07 5.2E-12 65.1 2.5 36 36-71 22-57 (256)
185 PRK13643 cbiO cobalt transport 98.4 2.5E-07 5.4E-12 66.3 2.6 36 36-71 27-62 (288)
186 TIGR03771 anch_rpt_ABC anchore 98.4 3.1E-07 6.7E-12 63.4 3.0 36 37-72 2-37 (223)
187 PRK13631 cbiO cobalt transport 98.4 2.7E-07 5.9E-12 67.1 2.8 41 32-72 41-83 (320)
188 cd03236 ABC_RNaseL_inhibitor_d 98.4 3.2E-07 7E-12 64.7 3.0 41 32-72 16-57 (255)
189 PRK09452 potA putrescine/sperm 98.4 2.2E-07 4.8E-12 68.9 2.3 37 36-72 35-71 (375)
190 TIGR02314 ABC_MetN D-methionin 98.4 2.4E-07 5.3E-12 68.0 2.5 37 36-72 26-62 (343)
191 cd03233 ABC_PDR_domain1 The pl 98.4 2.6E-07 5.5E-12 62.9 2.4 36 36-71 28-66 (202)
192 COG4559 ABC-type hemin transpo 98.3 3.1E-07 6.7E-12 63.4 2.7 37 36-72 22-58 (259)
193 PRK10419 nikE nickel transport 98.3 2.8E-07 6E-12 65.3 2.6 36 36-71 33-68 (268)
194 TIGR02142 modC_ABC molybdenum 98.3 2.4E-07 5.3E-12 68.1 2.4 37 35-71 17-53 (354)
195 PRK13634 cbiO cobalt transport 98.3 2.8E-07 6.1E-12 66.0 2.6 37 36-72 28-64 (290)
196 PRK13636 cbiO cobalt transport 98.3 3E-07 6.5E-12 65.6 2.6 36 36-71 27-62 (283)
197 COG0410 LivF ABC-type branched 98.3 2.4E-07 5.2E-12 64.2 2.0 37 36-72 24-60 (237)
198 cd03213 ABCG_EPDR ABCG transpo 98.3 3E-07 6.6E-12 62.2 2.4 37 36-72 30-68 (194)
199 TIGR02868 CydC thiol reductant 98.3 3E-07 6.4E-12 70.6 2.7 37 36-72 356-392 (529)
200 PRK10070 glycine betaine trans 98.3 2.9E-07 6.3E-12 68.8 2.5 37 36-72 49-85 (400)
201 PRK10418 nikD nickel transport 98.3 3.5E-07 7.6E-12 64.2 2.7 36 36-71 24-63 (254)
202 TIGR01186 proV glycine betaine 98.3 2.7E-07 6E-12 68.2 2.2 37 36-72 14-50 (363)
203 PRK10938 putative molybdenum t 98.3 3.7E-07 8E-12 69.6 2.9 37 36-72 24-60 (490)
204 cd03291 ABCC_CFTR1 The CFTR su 98.3 3.6E-07 7.8E-12 65.4 2.7 36 36-71 58-93 (282)
205 PRK13633 cobalt transporter AT 98.3 3.5E-07 7.6E-12 65.2 2.6 37 36-72 31-67 (280)
206 cd03288 ABCC_SUR2 The SUR doma 98.3 4.3E-07 9.4E-12 63.9 3.0 37 36-72 42-78 (257)
207 PRK14242 phosphate transporter 98.3 4.5E-07 9.7E-12 63.5 3.0 31 36-66 27-57 (253)
208 PRK11607 potG putrescine trans 98.3 3.1E-07 6.7E-12 68.2 2.3 36 36-71 40-75 (377)
209 PRK13547 hmuV hemin importer A 98.3 3.6E-07 7.8E-12 65.0 2.5 33 36-68 22-54 (272)
210 PRK09536 btuD corrinoid ABC tr 98.3 3.5E-07 7.6E-12 68.5 2.5 37 36-72 24-60 (402)
211 TIGR02982 heterocyst_DevA ABC 98.3 4.2E-07 9E-12 62.5 2.6 37 36-72 26-62 (220)
212 PRK13642 cbiO cobalt transport 98.3 4.3E-07 9.3E-12 64.6 2.8 37 36-72 28-64 (277)
213 PRK14267 phosphate ABC transpo 98.3 4.4E-07 9.5E-12 63.6 2.7 32 36-67 25-56 (253)
214 PRK13640 cbiO cobalt transport 98.3 4.6E-07 9.9E-12 64.7 2.8 34 36-69 28-61 (282)
215 cd03299 ABC_ModC_like Archeal 98.3 4.2E-07 9.1E-12 63.1 2.5 36 36-71 20-55 (235)
216 PRK14235 phosphate transporter 98.3 5.3E-07 1.1E-11 63.8 3.1 32 36-67 40-71 (267)
217 TIGR03415 ABC_choXWV_ATP choli 98.3 4E-07 8.6E-12 67.8 2.5 37 36-72 45-81 (382)
218 COG2274 SunT ABC-type bacterio 98.3 4.4E-07 9.5E-12 72.1 2.8 38 36-73 494-531 (709)
219 cd03300 ABC_PotA_N PotA is an 98.3 5.1E-07 1.1E-11 62.6 2.8 36 36-71 21-56 (232)
220 PRK14238 phosphate transporter 98.3 5.9E-07 1.3E-11 63.7 3.2 31 36-66 45-75 (271)
221 PRK10744 pstB phosphate transp 98.3 5.3E-07 1.1E-11 63.5 2.9 31 36-66 34-64 (260)
222 PRK14241 phosphate transporter 98.3 4.4E-07 9.6E-12 63.8 2.4 32 36-67 25-56 (258)
223 PRK14248 phosphate ABC transpo 98.3 5.8E-07 1.3E-11 63.6 3.0 31 36-66 42-72 (268)
224 PRK10762 D-ribose transporter 98.3 4.2E-07 9E-12 69.5 2.4 37 36-72 25-61 (501)
225 PRK11176 lipid transporter ATP 98.3 5.8E-07 1.3E-11 69.7 3.2 37 36-72 364-400 (582)
226 TIGR03258 PhnT 2-aminoethylpho 98.3 4.9E-07 1.1E-11 66.8 2.6 36 36-71 26-63 (362)
227 PRK14259 phosphate ABC transpo 98.3 6E-07 1.3E-11 63.6 2.9 31 36-66 34-64 (269)
228 PRK11819 putative ABC transpor 98.3 5E-07 1.1E-11 69.9 2.7 37 36-72 28-64 (556)
229 PRK14262 phosphate ABC transpo 98.3 5.7E-07 1.2E-11 62.9 2.7 32 36-67 24-55 (250)
230 PRK09700 D-allose transporter 98.3 4.9E-07 1.1E-11 69.2 2.5 37 36-72 284-320 (510)
231 CHL00131 ycf16 sulfate ABC tra 98.3 5.1E-07 1.1E-11 63.1 2.4 36 36-71 28-65 (252)
232 PRK14247 phosphate ABC transpo 98.3 6.4E-07 1.4E-11 62.6 2.9 32 36-67 24-55 (250)
233 PRK09700 D-allose transporter 98.3 4.6E-07 1E-11 69.4 2.3 37 36-72 26-62 (510)
234 PRK14251 phosphate ABC transpo 98.3 6.4E-07 1.4E-11 62.6 2.8 31 36-66 25-55 (251)
235 PRK09473 oppD oligopeptide tra 98.3 5.5E-07 1.2E-11 65.7 2.6 33 36-68 37-69 (330)
236 PRK15064 ABC transporter ATP-b 98.3 5.5E-07 1.2E-11 69.3 2.7 36 36-71 22-57 (530)
237 PRK10636 putative ABC transpor 98.3 5E-07 1.1E-11 71.1 2.5 36 36-71 22-57 (638)
238 PRK14273 phosphate ABC transpo 98.3 6.4E-07 1.4E-11 62.8 2.8 32 36-67 28-59 (254)
239 PRK10261 glutathione transport 98.3 5.5E-07 1.2E-11 70.6 2.6 36 36-71 37-72 (623)
240 PRK14246 phosphate ABC transpo 98.3 6.9E-07 1.5E-11 63.0 2.9 35 36-70 31-65 (257)
241 PRK11022 dppD dipeptide transp 98.3 5.8E-07 1.3E-11 65.5 2.6 32 36-67 28-59 (326)
242 PRK14237 phosphate transporter 98.3 7.2E-07 1.6E-11 63.1 2.9 31 36-66 41-71 (267)
243 PRK15093 antimicrobial peptide 98.2 6.8E-07 1.5E-11 65.2 2.9 31 36-66 28-58 (330)
244 cd03217 ABC_FeS_Assembly ABC-t 98.2 6.6E-07 1.4E-11 60.8 2.5 36 36-71 21-58 (200)
245 PRK14270 phosphate ABC transpo 98.2 8.2E-07 1.8E-11 62.1 3.1 32 36-67 25-56 (251)
246 PRK15439 autoinducer 2 ABC tra 98.2 5.7E-07 1.2E-11 69.0 2.4 37 36-72 32-68 (510)
247 cd03232 ABC_PDR_domain2 The pl 98.2 6.6E-07 1.4E-11 60.4 2.3 36 36-71 28-65 (192)
248 PRK09580 sufC cysteine desulfu 98.2 5.8E-07 1.3E-11 62.7 2.1 36 36-71 22-59 (248)
249 PRK14268 phosphate ABC transpo 98.2 7.2E-07 1.6E-11 62.8 2.6 32 36-67 33-64 (258)
250 COG4107 PhnK ABC-type phosphon 98.2 8.3E-07 1.8E-11 59.9 2.7 38 36-73 27-64 (258)
251 PRK13409 putative ATPase RIL; 98.2 8E-07 1.7E-11 69.4 3.0 52 22-73 79-131 (590)
252 cd03238 ABC_UvrA The excision 98.2 1.1E-06 2.3E-11 59.0 3.2 27 36-62 16-42 (176)
253 TIGR03797 NHPM_micro_ABC2 NHPM 98.2 7.2E-07 1.6E-11 70.5 2.7 37 36-72 474-510 (686)
254 PRK10982 galactose/methyl gala 98.2 6.1E-07 1.3E-11 68.4 2.2 37 36-72 19-55 (491)
255 cd00267 ABC_ATPase ABC (ATP-bi 98.2 8.1E-07 1.8E-11 58.0 2.5 36 36-71 20-55 (157)
256 PRK09984 phosphonate/organopho 98.2 7.8E-07 1.7E-11 62.7 2.6 33 36-68 25-57 (262)
257 PRK10261 glutathione transport 98.2 7.2E-07 1.6E-11 70.0 2.7 37 36-72 345-381 (623)
258 PRK14269 phosphate ABC transpo 98.2 8.9E-07 1.9E-11 61.9 2.8 31 36-66 23-53 (246)
259 TIGR03269 met_CoM_red_A2 methy 98.2 7.4E-07 1.6E-11 68.4 2.5 37 36-72 305-341 (520)
260 PRK14240 phosphate transporter 98.2 8.5E-07 1.9E-11 62.0 2.6 31 36-66 24-54 (250)
261 PRK14253 phosphate ABC transpo 98.2 1.2E-06 2.6E-11 61.2 3.3 32 36-67 24-55 (249)
262 COG0444 DppD ABC-type dipeptid 98.2 1E-06 2.3E-11 63.6 3.0 32 36-67 26-57 (316)
263 PRK10636 putative ABC transpor 98.2 8.4E-07 1.8E-11 69.8 2.8 37 36-72 333-369 (638)
264 PRK14274 phosphate ABC transpo 98.2 1.3E-06 2.8E-11 61.5 3.4 31 36-66 33-63 (259)
265 PRK14249 phosphate ABC transpo 98.2 9.5E-07 2.1E-11 61.8 2.8 33 36-68 25-57 (251)
266 PRK14263 phosphate ABC transpo 98.2 9.4E-07 2E-11 62.4 2.8 32 36-67 29-60 (261)
267 PRK14244 phosphate ABC transpo 98.2 1.1E-06 2.4E-11 61.5 3.1 31 36-66 26-56 (251)
268 COG4167 SapF ABC-type antimicr 98.2 9.9E-07 2.2E-11 59.9 2.6 37 36-72 34-70 (267)
269 PRK11147 ABC transporter ATPas 98.2 7.1E-07 1.5E-11 70.1 2.3 36 36-71 24-59 (635)
270 PRK10790 putative multidrug tr 98.2 9.3E-07 2E-11 68.8 2.8 37 36-72 362-398 (592)
271 PRK14254 phosphate ABC transpo 98.2 9.6E-07 2.1E-11 63.2 2.6 31 36-66 60-90 (285)
272 TIGR02204 MsbA_rel ABC transpo 98.2 1.1E-06 2.4E-11 68.0 3.2 37 36-72 361-397 (576)
273 cd01363 Motor_domain Myosin an 98.2 8.5E-07 1.8E-11 59.8 2.2 84 25-113 8-92 (186)
274 TIGR03719 ABC_ABC_ChvD ATP-bin 98.2 9.4E-07 2E-11 68.4 2.7 36 36-71 26-61 (552)
275 PRK11288 araG L-arabinose tran 98.2 7.7E-07 1.7E-11 68.1 2.2 37 36-72 274-310 (501)
276 PRK14272 phosphate ABC transpo 98.2 1.1E-06 2.3E-11 61.5 2.8 32 36-67 25-56 (252)
277 PRK11288 araG L-arabinose tran 98.2 8.9E-07 1.9E-11 67.7 2.5 37 36-72 25-61 (501)
278 COG4152 ABC-type uncharacteriz 98.2 7E-07 1.5E-11 62.8 1.7 37 36-72 23-59 (300)
279 TIGR03796 NHPM_micro_ABC1 NHPM 98.2 1E-06 2.2E-11 69.9 2.8 37 36-72 500-536 (710)
280 TIGR03269 met_CoM_red_A2 methy 98.2 1.1E-06 2.4E-11 67.5 2.9 36 36-71 21-58 (520)
281 TIGR01193 bacteriocin_ABC ABC- 98.2 1.1E-06 2.3E-11 69.8 2.9 37 36-72 495-531 (708)
282 PRK14236 phosphate transporter 98.2 1.2E-06 2.6E-11 62.1 2.8 32 36-67 46-77 (272)
283 PRK14243 phosphate transporter 98.2 1.6E-06 3.4E-11 61.3 3.4 31 36-66 31-61 (264)
284 PRK03695 vitamin B12-transport 98.2 8.7E-07 1.9E-11 62.1 2.1 34 36-70 17-50 (248)
285 PRK10762 D-ribose transporter 98.2 9.3E-07 2E-11 67.6 2.3 37 36-72 273-309 (501)
286 TIGR02857 CydD thiol reductant 98.2 1.1E-06 2.3E-11 67.5 2.6 37 36-72 343-379 (529)
287 PRK15064 ABC transporter ATP-b 98.2 1.1E-06 2.3E-11 67.7 2.6 37 36-72 340-376 (530)
288 PRK14256 phosphate ABC transpo 98.2 1.5E-06 3.3E-11 60.9 3.1 31 36-66 25-55 (252)
289 PRK15439 autoinducer 2 ABC tra 98.2 9.4E-07 2E-11 67.8 2.2 37 36-72 284-320 (510)
290 TIGR00958 3a01208 Conjugate Tr 98.2 1.3E-06 2.9E-11 69.4 3.1 37 36-72 502-538 (711)
291 PRK14271 phosphate ABC transpo 98.2 1.2E-06 2.6E-11 62.3 2.6 32 36-67 42-73 (276)
292 PRK14252 phosphate ABC transpo 98.2 1.4E-06 3E-11 61.6 2.8 32 36-67 37-68 (265)
293 TIGR02203 MsbA_lipidA lipid A 98.2 1.4E-06 3.1E-11 67.3 3.2 37 36-72 353-389 (571)
294 COG1122 CbiO ABC-type cobalt t 98.2 1.3E-06 2.9E-11 61.0 2.7 37 36-72 25-61 (235)
295 PRK13549 xylose transporter AT 98.2 1E-06 2.2E-11 67.5 2.3 36 36-71 26-63 (506)
296 PRK11147 ABC transporter ATPas 98.2 1.1E-06 2.4E-11 69.0 2.5 37 36-72 340-376 (635)
297 PRK14275 phosphate ABC transpo 98.2 1.4E-06 3E-11 62.4 2.8 31 36-66 60-90 (286)
298 COG4586 ABC-type uncharacteriz 98.2 1.1E-06 2.4E-11 62.6 2.2 38 36-73 45-82 (325)
299 PRK11819 putative ABC transpor 98.2 1.1E-06 2.4E-11 68.1 2.4 37 36-72 345-381 (556)
300 PRK14260 phosphate ABC transpo 98.2 1.8E-06 3.9E-11 60.8 3.3 32 36-67 28-59 (259)
301 PRK13657 cyclic beta-1,2-gluca 98.1 1.3E-06 2.9E-11 67.9 2.7 37 36-72 356-392 (588)
302 PRK10522 multidrug transporter 98.1 1.2E-06 2.6E-11 67.6 2.5 37 36-72 344-380 (547)
303 PRK10789 putative multidrug tr 98.1 1.5E-06 3.2E-11 67.5 2.9 37 36-72 336-372 (569)
304 PRK10982 galactose/methyl gala 98.1 1.1E-06 2.3E-11 67.1 2.1 37 36-72 269-305 (491)
305 TIGR03719 ABC_ABC_ChvD ATP-bin 98.1 1.1E-06 2.3E-11 68.0 2.1 37 36-72 343-379 (552)
306 cd00820 PEPCK_HprK Phosphoenol 98.1 2E-06 4.4E-11 53.3 2.9 27 36-62 10-36 (107)
307 PRK14239 phosphate transporter 98.1 1.7E-06 3.6E-11 60.5 2.9 30 36-65 26-55 (252)
308 TIGR03375 type_I_sec_LssB type 98.1 1.4E-06 3.1E-11 69.0 2.8 37 36-72 486-522 (694)
309 PRK14264 phosphate ABC transpo 98.1 1.5E-06 3.3E-11 62.7 2.7 31 36-66 66-96 (305)
310 PRK11174 cysteine/glutathione 98.1 1.4E-06 3E-11 67.7 2.7 36 36-72 371-406 (588)
311 PRK15134 microcin C ABC transp 98.1 1.3E-06 2.9E-11 67.2 2.5 32 36-67 30-61 (529)
312 PRK14265 phosphate ABC transpo 98.1 1.9E-06 4E-11 61.3 2.9 31 36-66 41-71 (274)
313 PRK14255 phosphate ABC transpo 98.1 1.9E-06 4.1E-11 60.3 2.9 31 36-66 26-56 (252)
314 COG4175 ProV ABC-type proline/ 98.1 2.9E-06 6.2E-11 61.7 3.8 39 35-73 48-86 (386)
315 PRK11160 cysteine/glutathione 98.1 1.6E-06 3.5E-11 67.3 2.8 37 36-72 361-397 (574)
316 PRK14258 phosphate ABC transpo 98.1 1.9E-06 4.1E-11 60.8 2.9 33 36-68 28-60 (261)
317 PRK14245 phosphate ABC transpo 98.1 2.3E-06 5.1E-11 59.8 3.3 29 36-64 24-52 (250)
318 cd03289 ABCC_CFTR2 The CFTR su 98.1 2.3E-06 4.9E-11 61.1 3.2 35 36-71 25-59 (275)
319 PRK13549 xylose transporter AT 98.1 1.5E-06 3.1E-11 66.6 2.4 36 36-71 283-319 (506)
320 PLN03073 ABC transporter F fam 98.1 1.6E-06 3.4E-11 69.2 2.6 37 36-72 530-566 (718)
321 cd01130 VirB11-like_ATPase Typ 98.1 3.6E-06 7.8E-11 56.6 3.9 36 35-70 19-54 (186)
322 TIGR01842 type_I_sec_PrtD type 98.1 1.9E-06 4E-11 66.6 2.7 37 36-72 339-375 (544)
323 TIGR02633 xylG D-xylose ABC tr 98.1 1.5E-06 3.3E-11 66.3 2.2 36 36-71 281-317 (500)
324 PRK14261 phosphate ABC transpo 98.1 2.2E-06 4.8E-11 60.1 2.9 31 36-66 27-57 (253)
325 COG1129 MglA ABC-type sugar tr 98.1 1.8E-06 3.9E-11 65.9 2.5 37 36-72 29-65 (500)
326 TIGR02633 xylG D-xylose ABC tr 98.1 1.5E-06 3.3E-11 66.4 2.1 36 36-71 22-59 (500)
327 PRK13409 putative ATPase RIL; 98.1 2E-06 4.3E-11 67.2 2.6 35 38-72 362-396 (590)
328 TIGR00235 udk uridine kinase. 98.1 3.7E-06 8E-11 57.4 3.6 30 38-67 3-32 (207)
329 PRK14266 phosphate ABC transpo 98.1 3.4E-06 7.3E-11 59.0 3.4 31 36-66 24-54 (250)
330 TIGR01194 cyc_pep_trnsptr cycl 98.1 2.1E-06 4.4E-11 66.6 2.5 37 36-72 363-399 (555)
331 COG4778 PhnL ABC-type phosphon 98.1 3E-06 6.5E-11 57.0 2.9 37 36-72 32-68 (235)
332 COG1132 MdlB ABC-type multidru 98.1 2.6E-06 5.6E-11 66.0 3.0 41 32-72 344-386 (567)
333 PRK13545 tagH teichoic acids e 98.1 2.2E-06 4.8E-11 66.1 2.6 36 36-71 45-80 (549)
334 PRK10938 putative molybdenum t 98.1 2.4E-06 5.2E-11 65.2 2.7 32 36-67 281-312 (490)
335 COG3845 ABC-type uncharacteriz 98.1 2.5E-06 5.4E-11 64.7 2.7 37 36-72 25-61 (501)
336 COG1119 ModF ABC-type molybden 98.1 3.2E-06 6.9E-11 59.3 3.0 35 37-71 53-87 (257)
337 COG4181 Predicted ABC-type tra 98.1 2.5E-06 5.4E-11 57.3 2.4 37 36-72 31-67 (228)
338 TIGR01192 chvA glucan exporter 98.1 2.4E-06 5.1E-11 66.6 2.6 37 36-72 356-392 (585)
339 COG0488 Uup ATPase components 98.0 2.7E-06 5.8E-11 65.7 2.6 37 36-72 24-60 (530)
340 COG1135 AbcC ABC-type metal io 98.0 3.2E-06 6.9E-11 61.1 2.7 37 36-72 27-63 (339)
341 PRK15134 microcin C ABC transp 98.0 2.9E-06 6.3E-11 65.3 2.7 35 36-71 307-341 (529)
342 COG4987 CydC ABC-type transpor 98.0 3.9E-06 8.4E-11 64.3 3.3 37 36-72 359-395 (573)
343 TIGR00954 3a01203 Peroxysomal 98.0 3.2E-06 7E-11 66.8 2.9 36 36-71 473-508 (659)
344 TIGR01846 type_I_sec_HlyB type 98.0 3.6E-06 7.7E-11 66.7 2.8 37 36-72 478-514 (694)
345 COG4615 PvdE ABC-type sideroph 98.0 4.3E-06 9.3E-11 62.5 2.8 37 36-72 344-380 (546)
346 COG4136 ABC-type uncharacteriz 98.0 5.9E-06 1.3E-10 54.6 3.2 33 36-68 23-55 (213)
347 KOG0058|consensus 98.0 5.1E-06 1.1E-10 65.4 3.4 42 32-73 483-526 (716)
348 COG4604 CeuD ABC-type enteroch 98.0 6.7E-06 1.5E-10 56.4 3.4 37 36-72 22-58 (252)
349 COG4988 CydD ABC-type transpor 98.0 4.5E-06 9.7E-11 64.3 2.9 37 36-72 342-378 (559)
350 PTZ00265 multidrug resistance 98.0 5.3E-06 1.1E-10 70.5 3.5 37 36-72 406-442 (1466)
351 COG4618 ArpD ABC-type protease 98.0 5.5E-06 1.2E-10 63.3 2.9 38 36-73 357-394 (580)
352 COG0396 sufC Cysteine desulfur 98.0 5.4E-06 1.2E-10 57.7 2.7 38 31-68 18-57 (251)
353 TIGR03238 dnd_assoc_3 dnd syst 98.0 4.2E-06 9.1E-11 63.8 2.2 32 37-70 28-59 (504)
354 cd03270 ABC_UvrA_I The excisio 98.0 9.7E-06 2.1E-10 56.2 3.8 28 31-58 9-38 (226)
355 COG1123 ATPase components of v 97.9 5.9E-06 1.3E-10 63.6 2.7 33 36-68 30-62 (539)
356 PF13207 AAA_17: AAA domain; P 97.9 1.2E-05 2.6E-10 49.9 3.6 23 43-65 1-23 (121)
357 PRK10078 ribose 1,5-bisphospho 97.9 8.6E-06 1.9E-10 54.7 3.1 26 41-66 2-27 (186)
358 KOG0055|consensus 97.9 8.6E-06 1.9E-10 67.5 3.2 37 36-72 374-410 (1228)
359 PRK00300 gmk guanylate kinase; 97.9 1.3E-05 2.9E-10 54.3 3.7 28 39-66 3-30 (205)
360 PRK14257 phosphate ABC transpo 97.9 8.7E-06 1.9E-10 59.5 2.9 31 36-66 103-133 (329)
361 cd03243 ABC_MutS_homologs The 97.9 7.4E-06 1.6E-10 55.7 2.4 29 36-64 24-52 (202)
362 TIGR02322 phosphon_PhnN phosph 97.9 1.4E-05 3.1E-10 53.0 3.6 26 41-66 1-26 (179)
363 PRK09825 idnK D-gluconate kina 97.9 1.5E-05 3.3E-10 53.3 3.6 28 40-67 2-29 (176)
364 COG1137 YhbG ABC-type (unclass 97.9 6E-07 1.3E-11 61.5 -3.3 37 36-72 25-61 (243)
365 COG4178 ABC-type uncharacteriz 97.9 1.1E-05 2.4E-10 62.9 3.1 37 36-72 414-450 (604)
366 COG0488 Uup ATPase components 97.9 1.2E-05 2.6E-10 62.2 3.2 36 37-72 344-379 (530)
367 COG4172 ABC-type uncharacteriz 97.9 1.5E-05 3.4E-10 59.7 3.7 33 36-68 308-340 (534)
368 COG4161 ArtP ABC-type arginine 97.9 1.9E-05 4.2E-10 52.8 3.6 45 27-71 12-58 (242)
369 KOG0057|consensus 97.9 1.6E-05 3.4E-10 61.2 3.6 36 36-72 373-408 (591)
370 PRK09270 nucleoside triphospha 97.8 2.3E-05 5.1E-10 54.3 4.2 33 39-71 31-63 (229)
371 cd03283 ABC_MutS-like MutS-lik 97.8 1.9E-05 4E-10 53.9 3.6 30 36-65 20-49 (199)
372 cd03278 ABC_SMC_barmotin Barmo 97.8 1.9E-05 4.2E-10 53.7 3.5 31 37-68 19-49 (197)
373 PLN03073 ABC transporter F fam 97.8 1.2E-05 2.6E-10 64.2 2.7 29 36-64 198-226 (718)
374 PLN03232 ABC transporter C fam 97.8 1.2E-05 2.5E-10 68.6 2.7 41 32-72 1251-1293(1495)
375 TIGR03263 guanyl_kin guanylate 97.8 1.7E-05 3.7E-10 52.6 3.0 26 41-66 1-26 (180)
376 COG1101 PhnK ABC-type uncharac 97.8 1.3E-05 2.9E-10 55.5 2.5 38 36-73 27-64 (263)
377 TIGR01257 rim_protein retinal- 97.8 1.2E-05 2.5E-10 70.3 2.6 37 36-72 1960-1996(2272)
378 PLN03130 ABC transporter C fam 97.8 1.2E-05 2.6E-10 69.0 2.6 37 36-72 1260-1296(1622)
379 PRK10535 macrolide transporter 97.8 1.3E-05 2.7E-10 63.4 2.5 36 36-71 29-64 (648)
380 KOG0056|consensus 97.8 2.1E-05 4.6E-10 60.4 3.6 38 36-73 559-596 (790)
381 PLN03211 ABC transporter G-25; 97.8 9.8E-06 2.1E-10 64.2 1.8 36 32-67 83-120 (659)
382 PF13555 AAA_29: P-loop contai 97.8 4.3E-05 9.2E-10 42.8 3.8 27 41-67 23-49 (62)
383 KOG0055|consensus 97.8 2.1E-05 4.5E-10 65.3 3.6 41 32-72 1005-1047(1228)
384 PTZ00243 ABC transporter; Prov 97.8 1.3E-05 2.9E-10 68.5 2.5 37 36-72 1331-1367(1560)
385 TIGR01257 rim_protein retinal- 97.8 1.2E-05 2.6E-10 70.3 2.2 37 36-72 951-987 (2272)
386 PRK05480 uridine/cytidine kina 97.8 3.1E-05 6.8E-10 52.8 3.7 26 40-65 5-30 (209)
387 PTZ00265 multidrug resistance 97.8 2E-05 4.3E-10 67.1 3.3 37 32-68 1183-1221(1466)
388 KOG0060|consensus 97.8 2E-05 4.3E-10 61.1 3.0 36 36-71 456-491 (659)
389 TIGR00957 MRP_assoc_pro multi 97.8 1.8E-05 4E-10 67.6 2.9 41 32-72 1301-1343(1522)
390 PLN03232 ABC transporter C fam 97.7 2.1E-05 4.5E-10 67.2 3.0 36 36-71 638-673 (1495)
391 KOG0927|consensus 97.7 1.3E-05 2.8E-10 61.7 1.6 57 17-73 381-448 (614)
392 cd02023 UMPK Uridine monophosp 97.7 3E-05 6.4E-10 52.4 3.2 23 43-65 1-23 (198)
393 PLN03130 ABC transporter C fam 97.7 2.7E-05 5.9E-10 66.9 3.5 36 36-71 638-674 (1622)
394 TIGR02788 VirB11 P-type DNA tr 97.7 3.5E-05 7.5E-10 55.8 3.6 36 34-69 137-172 (308)
395 cd02025 PanK Pantothenate kina 97.7 3E-05 6.6E-10 53.6 3.1 25 43-67 1-25 (220)
396 cd03272 ABC_SMC3_euk Eukaryoti 97.7 3.2E-05 7E-10 53.7 3.2 27 40-66 22-48 (243)
397 TIGR01271 CFTR_protein cystic 97.7 2.4E-05 5.1E-10 66.8 2.8 37 36-72 447-483 (1490)
398 PF00485 PRK: Phosphoribulokin 97.7 4.5E-05 9.7E-10 51.5 3.6 26 43-68 1-26 (194)
399 TIGR00957 MRP_assoc_pro multi 97.7 2.4E-05 5.2E-10 66.9 2.7 37 36-72 659-695 (1522)
400 cd03273 ABC_SMC2_euk Eukaryoti 97.7 5.3E-05 1.1E-09 53.1 3.8 29 40-68 24-52 (251)
401 PTZ00243 ABC transporter; Prov 97.6 2.9E-05 6.3E-10 66.5 2.6 36 36-71 681-716 (1560)
402 smart00382 AAA ATPases associa 97.6 6.5E-05 1.4E-09 46.4 3.4 28 41-68 2-29 (148)
403 COG0194 Gmk Guanylate kinase [ 97.6 8.1E-05 1.8E-09 50.3 3.4 26 40-65 3-28 (191)
404 PRK07261 topology modulation p 97.6 8.3E-05 1.8E-09 49.4 3.5 24 42-65 1-24 (171)
405 TIGR01271 CFTR_protein cystic 97.6 5.7E-05 1.2E-09 64.6 3.2 35 36-71 1240-1274(1490)
406 TIGR01187 potA spermidine/putr 97.6 2.4E-05 5.1E-10 57.1 0.8 26 46-71 1-26 (325)
407 COG4598 HisP ABC-type histidin 97.6 8.2E-05 1.8E-09 50.6 3.3 37 36-72 27-63 (256)
408 PRK08118 topology modulation p 97.6 9.4E-05 2E-09 49.1 3.6 25 42-66 2-26 (167)
409 KOG0064|consensus 97.6 6.2E-05 1.3E-09 58.2 2.9 36 36-71 503-538 (728)
410 cd03279 ABC_sbcCD SbcCD and ot 97.5 7.9E-05 1.7E-09 51.1 3.1 26 40-65 27-52 (213)
411 cd01131 PilT Pilus retraction 97.5 0.00011 2.4E-09 49.9 3.8 26 43-68 3-28 (198)
412 TIGR00955 3a01204 The Eye Pigm 97.5 5E-05 1.1E-09 59.7 2.4 32 36-67 46-77 (617)
413 PTZ00301 uridine kinase; Provi 97.5 0.0001 2.2E-09 50.8 3.5 24 42-65 4-27 (210)
414 TIGR00554 panK_bact pantothena 97.5 0.0001 2.3E-09 53.1 3.7 28 40-67 61-88 (290)
415 TIGR02524 dot_icm_DotB Dot/Icm 97.5 0.00012 2.7E-09 54.1 4.2 31 38-68 131-161 (358)
416 cd03280 ABC_MutS2 MutS2 homolo 97.5 0.00012 2.7E-09 49.6 3.9 27 36-62 22-49 (200)
417 PRK08233 hypothetical protein; 97.5 0.00011 2.4E-09 48.5 3.6 26 41-66 3-28 (182)
418 cd03274 ABC_SMC4_euk Eukaryoti 97.5 8.8E-05 1.9E-09 51.0 3.2 23 42-64 26-48 (212)
419 TIGR00956 3a01205 Pleiotropic 97.5 4.6E-05 1E-09 64.7 2.1 29 38-66 786-814 (1394)
420 PLN03140 ABC transporter G fam 97.5 4.6E-05 9.9E-10 65.0 2.0 32 37-68 187-218 (1470)
421 PRK00889 adenylylsulfate kinas 97.5 0.00015 3.3E-09 48.0 4.2 29 39-67 2-30 (175)
422 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00015 3.3E-09 46.6 3.8 30 38-67 19-48 (133)
423 PF03193 DUF258: Protein of un 97.5 0.00013 2.7E-09 48.4 3.5 28 39-66 33-60 (161)
424 PF13671 AAA_33: AAA domain; P 97.5 0.00013 2.8E-09 46.4 3.5 23 43-65 1-23 (143)
425 cd02019 NK Nucleoside/nucleoti 97.5 0.00014 3E-09 41.3 3.2 23 43-65 1-23 (69)
426 cd02026 PRK Phosphoribulokinas 97.5 9.9E-05 2.2E-09 52.7 3.0 26 43-68 1-26 (273)
427 PRK13851 type IV secretion sys 97.5 0.00012 2.6E-09 53.9 3.5 32 37-68 158-189 (344)
428 PF00004 AAA: ATPase family as 97.5 0.00015 3.2E-09 45.2 3.5 23 44-66 1-23 (132)
429 PRK10416 signal recognition pa 97.5 0.00015 3.3E-09 52.8 3.9 32 40-71 113-144 (318)
430 PRK10751 molybdopterin-guanine 97.5 0.00017 3.7E-09 48.3 3.8 27 41-67 6-32 (173)
431 cd00071 GMPK Guanosine monopho 97.5 0.00011 2.5E-09 47.1 2.9 23 44-66 2-24 (137)
432 cd00227 CPT Chloramphenicol (C 97.5 0.00017 3.7E-09 47.9 3.8 25 41-65 2-26 (175)
433 PRK05541 adenylylsulfate kinas 97.4 0.00018 4E-09 47.6 3.9 28 39-66 5-32 (176)
434 PF13238 AAA_18: AAA domain; P 97.4 0.00016 3.5E-09 44.9 3.4 22 44-65 1-22 (129)
435 cd00009 AAA The AAA+ (ATPases 97.4 0.00026 5.7E-09 44.1 4.2 27 40-66 18-44 (151)
436 PLN02165 adenylate isopentenyl 97.4 0.00022 4.8E-09 52.3 4.3 29 38-66 40-68 (334)
437 TIGR01420 pilT_fam pilus retra 97.4 0.0002 4.3E-09 52.7 3.9 32 36-67 117-148 (343)
438 PRK14738 gmk guanylate kinase; 97.4 0.00018 3.9E-09 49.2 3.4 26 39-64 11-36 (206)
439 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00021 4.5E-09 47.5 3.5 24 42-65 4-27 (188)
440 TIGR00956 3a01205 Pleiotropic 97.4 8.5E-05 1.8E-09 63.2 1.9 29 37-65 83-111 (1394)
441 PRK06995 flhF flagellar biosyn 97.4 0.00027 5.9E-09 54.2 4.3 31 40-70 255-285 (484)
442 TIGR01313 therm_gnt_kin carboh 97.4 0.00016 3.4E-09 47.3 2.7 23 44-66 1-23 (163)
443 PRK06696 uridine kinase; Valid 97.4 0.00023 4.9E-09 49.2 3.5 28 40-67 21-48 (223)
444 PRK03846 adenylylsulfate kinas 97.3 0.00027 5.9E-09 47.9 3.8 29 39-67 22-50 (198)
445 PRK14737 gmk guanylate kinase; 97.3 0.00024 5.1E-09 48.0 3.5 26 40-65 3-28 (186)
446 PF13401 AAA_22: AAA domain; P 97.3 0.00025 5.4E-09 44.4 3.3 28 40-67 3-30 (131)
447 PRK06762 hypothetical protein; 97.3 0.00028 6E-09 46.3 3.6 24 42-65 3-26 (166)
448 PLN02796 D-glycerate 3-kinase 97.3 0.00023 5E-09 52.4 3.5 26 43-68 102-127 (347)
449 PRK06547 hypothetical protein; 97.3 0.00035 7.5E-09 46.7 4.1 30 36-65 10-39 (172)
450 PRK14527 adenylate kinase; Pro 97.3 0.00031 6.6E-09 47.3 3.8 28 38-65 3-30 (191)
451 cd01129 PulE-GspE PulE/GspE Th 97.3 0.00033 7.1E-09 49.8 4.0 30 38-67 77-106 (264)
452 cd03275 ABC_SMC1_euk Eukaryoti 97.3 0.00033 7E-09 49.1 3.7 28 41-68 22-49 (247)
453 PRK06217 hypothetical protein; 97.3 0.00031 6.8E-09 47.0 3.4 25 42-66 2-26 (183)
454 PRK05057 aroK shikimate kinase 97.3 0.00036 7.9E-09 46.4 3.7 25 41-65 4-28 (172)
455 PLN03140 ABC transporter G fam 97.3 0.00017 3.7E-09 61.6 2.6 29 38-66 903-931 (1470)
456 PRK00131 aroK shikimate kinase 97.3 0.00039 8.5E-09 45.5 3.8 26 40-65 3-28 (175)
457 TIGR02858 spore_III_AA stage I 97.3 0.00023 5E-09 50.8 2.7 30 42-71 112-141 (270)
458 COG4172 ABC-type uncharacteriz 97.2 0.00026 5.5E-09 53.4 2.9 33 36-68 31-63 (534)
459 COG4148 ModC ABC-type molybdat 97.2 0.00025 5.4E-09 51.1 2.7 35 38-72 21-55 (352)
460 cd03287 ABC_MSH3_euk MutS3 hom 97.2 0.00012 2.6E-09 50.8 1.1 33 38-70 28-61 (222)
461 cd02028 UMPK_like Uridine mono 97.2 0.00033 7.2E-09 46.9 3.2 24 43-66 1-24 (179)
462 COG0572 Udk Uridine kinase [Nu 97.2 0.00037 8E-09 48.2 3.4 25 42-66 9-33 (218)
463 COG1245 Predicted ATPase, RNas 97.2 0.00026 5.6E-09 54.0 2.8 53 21-73 79-132 (591)
464 cd03282 ABC_MSH4_euk MutS4 hom 97.2 0.00039 8.5E-09 47.6 3.5 29 37-65 25-53 (204)
465 PRK13900 type IV secretion sys 97.2 0.00035 7.5E-09 51.3 3.4 30 38-67 157-186 (332)
466 PRK14721 flhF flagellar biosyn 97.2 0.00043 9.3E-09 52.3 3.9 27 39-65 189-215 (420)
467 PF03215 Rad17: Rad17 cell cyc 97.2 0.00023 4.9E-09 55.1 2.4 58 10-67 10-71 (519)
468 PF00625 Guanylate_kin: Guanyl 97.2 0.00055 1.2E-08 45.7 4.0 26 41-66 2-27 (183)
469 cd03271 ABC_UvrA_II The excisi 97.2 0.00037 8.1E-09 49.5 3.3 25 38-62 18-42 (261)
470 PRK14530 adenylate kinase; Pro 97.2 0.0005 1.1E-08 47.1 3.8 27 41-67 3-29 (215)
471 smart00534 MUTSac ATPase domai 97.2 0.00018 3.8E-09 48.4 1.5 20 43-62 1-20 (185)
472 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.00017 3.7E-09 49.6 1.4 22 42-63 30-51 (213)
473 PF08477 Miro: Miro-like prote 97.2 0.00047 1E-08 42.4 3.3 24 44-67 2-25 (119)
474 PRK14722 flhF flagellar biosyn 97.2 0.0006 1.3E-08 50.8 4.3 31 38-68 134-164 (374)
475 PF00437 T2SE: Type II/IV secr 97.2 0.00047 1E-08 48.7 3.6 30 39-68 125-154 (270)
476 COG4138 BtuD ABC-type cobalami 97.2 0.00036 7.8E-09 47.3 2.8 32 37-68 21-52 (248)
477 TIGR03015 pepcterm_ATPase puta 97.2 0.00051 1.1E-08 48.2 3.7 26 41-66 43-68 (269)
478 cd01120 RecA-like_NTPases RecA 97.2 0.0005 1.1E-08 44.0 3.4 26 43-68 1-26 (165)
479 KOG0059|consensus 97.2 0.00023 5.1E-09 58.2 2.2 41 32-72 580-622 (885)
480 PF13191 AAA_16: AAA ATPase do 97.2 0.00045 9.7E-09 45.5 3.2 30 39-68 22-51 (185)
481 cd02024 NRK1 Nicotinamide ribo 97.2 0.0004 8.8E-09 47.0 3.0 23 43-65 1-23 (187)
482 TIGR00455 apsK adenylylsulfate 97.2 0.00059 1.3E-08 45.5 3.8 29 38-66 15-43 (184)
483 TIGR00101 ureG urease accessor 97.2 0.00051 1.1E-08 46.8 3.6 26 43-68 3-28 (199)
484 cd02020 CMPK Cytidine monophos 97.2 0.00046 9.9E-09 43.9 3.2 23 43-65 1-23 (147)
485 cd01876 YihA_EngB The YihA (En 97.1 0.00033 7.2E-09 44.8 2.4 27 44-70 2-30 (170)
486 TIGR02782 TrbB_P P-type conjug 97.1 0.00059 1.3E-08 49.4 3.9 30 38-67 129-158 (299)
487 COG4674 Uncharacterized ABC-ty 97.1 7.5E-05 1.6E-09 51.3 -0.6 36 37-72 27-62 (249)
488 cd03240 ABC_Rad50 The catalyti 97.1 0.00041 8.9E-09 47.4 2.9 21 42-62 23-43 (204)
489 PRK03839 putative kinase; Prov 97.1 0.00058 1.3E-08 45.4 3.6 23 43-65 2-24 (180)
490 COG0563 Adk Adenylate kinase a 97.1 0.00053 1.1E-08 46.1 3.4 23 43-65 2-24 (178)
491 KOG0054|consensus 97.1 0.00044 9.5E-09 58.6 3.5 37 37-73 1162-1198(1381)
492 PF13476 AAA_23: AAA domain; P 97.1 0.00061 1.3E-08 45.3 3.7 28 40-67 18-45 (202)
493 PF10662 PduV-EutP: Ethanolami 97.1 0.0004 8.7E-09 45.1 2.6 26 42-67 2-27 (143)
494 PF03205 MobB: Molybdopterin g 97.1 0.00077 1.7E-08 43.6 3.9 26 43-68 2-27 (140)
495 PF02367 UPF0079: Uncharacteri 97.1 0.00075 1.6E-08 42.8 3.7 31 38-68 12-42 (123)
496 KOG0061|consensus 97.1 0.00041 9E-09 54.7 3.1 30 38-67 53-82 (613)
497 cd02027 APSK Adenosine 5'-phos 97.1 0.00056 1.2E-08 44.5 3.2 24 43-66 1-24 (149)
498 PF07728 AAA_5: AAA domain (dy 97.1 0.00065 1.4E-08 43.2 3.3 22 44-65 2-23 (139)
499 PF01926 MMR_HSR1: 50S ribosom 97.1 0.00053 1.2E-08 42.2 2.8 21 44-64 2-22 (116)
500 cd01854 YjeQ_engC YjeQ/EngC. 97.1 0.00058 1.3E-08 49.0 3.4 31 40-70 160-190 (287)
No 1
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3e-36 Score=237.12 Aligned_cols=114 Identities=40% Similarity=0.665 Sum_probs=103.8
Q ss_pred CCCCCCHHHHHHhhcC-CCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-chhHH
Q psy7658 1 MYDMYGLDMVKKYEGQ-ILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP-SNLIT 77 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~-~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~-~~~~~ 77 (114)
+||+|+.+++..|++. ...++|||+|++++.||++|.. ..+|+|+|+||||||||+..|.+++++....+.. ...++
T Consensus 141 ~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~~~~~~~ie 220 (821)
T PTZ00014 141 DLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGNMDLKIQ 220 (821)
T ss_pred CCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhccCCCcccHH
Confidence 5799999999999986 4678999999999999999874 6799999999999999999999999998765433 34689
Q ss_pred HHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 78 EQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 78 ~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 221 ~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~ 257 (821)
T PTZ00014 221 NAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGE 257 (821)
T ss_pred HHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcC
Confidence 9999999999999999999999999999999999973
No 2
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.9e-36 Score=233.91 Aligned_cols=114 Identities=46% Similarity=0.844 Sum_probs=106.0
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-----ch
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP-----SN 74 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~-----~~ 74 (114)
+||+|+++++..|+++...++|||+|++++.||+.|. ...+|+|+|+||||||||+..|.++.++...++.. ..
T Consensus 45 ~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~ 124 (691)
T cd01380 45 RLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSET 124 (691)
T ss_pred CCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCccccccc
Confidence 4799999999999999999999999999999999987 46799999999999999999999999999887644 34
Q ss_pred hHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 75 LITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 75 ~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
.++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 125 ~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~ 164 (691)
T cd01380 125 QVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDK 164 (691)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEECC
Confidence 6889999999999999999999999999999999999973
No 3
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=6.7e-36 Score=232.68 Aligned_cols=114 Identities=51% Similarity=0.846 Sum_probs=105.2
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-------
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP------- 72 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~------- 72 (114)
++|+|+++++..|+++...++|||+|++++.||+.|.. ..+|+|+|+||||||||+..|.+++++...++..
T Consensus 50 ~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~ 129 (693)
T cd01377 50 RLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSG 129 (693)
T ss_pred cCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccc
Confidence 47899999999999999999999999999999999875 6799999999999999999999999998876542
Q ss_pred --chhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 73 --SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 73 --~~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
...++++|.+++|||||||||||.+|+||||||||++|+|++
T Consensus 130 ~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~ 173 (693)
T cd01377 130 KGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGN 173 (693)
T ss_pred cccccHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECC
Confidence 235888999999999999999999999999999999999974
No 4
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.1e-36 Score=238.88 Aligned_cols=113 Identities=52% Similarity=0.855 Sum_probs=105.8
Q ss_pred CCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc---hhHH
Q psy7658 2 YDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS---NLIT 77 (114)
Q Consensus 2 l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~---~~~~ 77 (114)
||+|..+++..|.++.+.+++||+|++|+.||++|.. .++|+|+|+||||+|||+.++.|+++++...+... ..++
T Consensus 112 L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE 191 (1463)
T COG5022 112 LGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSSTVEISSIE 191 (1463)
T ss_pred CCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCcchHHHHH
Confidence 7999999999999999999999999999999999985 66999999999999999999999999998765433 4688
Q ss_pred HHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 78 EQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 78 ~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
++|.+.||||||||||||.+||||||||||+++.|++
T Consensus 192 ~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~ 228 (1463)
T COG5022 192 KQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDE 228 (1463)
T ss_pred HHHHhcchHHHHhccccccccCCcccccceEEEEECC
Confidence 9999999999999999999999999999999999984
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.2e-35 Score=230.50 Aligned_cols=113 Identities=53% Similarity=0.930 Sum_probs=105.3
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHH
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQ 79 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~ 79 (114)
+||+|+.+++..|+++.+.++|||+|++++.||+.|.. ..+|+|+|+||||||||+..|.++.++...++.. ..++++
T Consensus 45 ~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~-~~i~~~ 123 (671)
T cd01381 45 ILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH-SWIEQQ 123 (671)
T ss_pred cCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC-CcHHHH
Confidence 57999999999999999999999999999999999875 6799999999999999999999999999887653 357889
Q ss_pred HhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 80 ILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 80 i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+.+++|||||||||||.+|+||||||||++|+|++
T Consensus 124 il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~ 158 (671)
T cd01381 124 ILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNK 158 (671)
T ss_pred HHHHHHHHHHhhccccCCCCCccccceeEEEEECC
Confidence 99999999999999999999999999999999973
No 6
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=2.3e-35 Score=231.18 Aligned_cols=114 Identities=29% Similarity=0.530 Sum_probs=104.3
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc-hhHHH
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS-NLITE 78 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~-~~~~~ 78 (114)
+||+|+++++..|+++...++|||||++++.||++|.. ..+|+|+|+||||||||+..|.+++++...++... ....+
T Consensus 45 ~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e 124 (767)
T cd01386 45 PLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVE 124 (767)
T ss_pred CCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccHHH
Confidence 57999999999999999999999999999999999875 67999999999999999999999999998776543 23457
Q ss_pred HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
++.+++|||||||||||.+|+||||||||++|+|++
T Consensus 125 ~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~ 160 (767)
T cd01386 125 KVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQ 160 (767)
T ss_pred HHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECC
Confidence 899999999999999999999999999999999973
No 7
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=2.8e-35 Score=229.12 Aligned_cols=114 Identities=49% Similarity=0.802 Sum_probs=103.8
Q ss_pred CCCCCCHHHHHHhhcCC-CCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC--chhH
Q psy7658 1 MYDMYGLDMVKKYEGQI-LGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP--SNLI 76 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~-~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~--~~~~ 76 (114)
+||+|+++++..|++.. ..++|||+|++++.||+.|.. ..+|+|+|+||||||||+..|.+++++...++.. ...+
T Consensus 52 ~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i 131 (692)
T cd01385 52 FLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGV 131 (692)
T ss_pred CCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcH
Confidence 47999999999999887 788999999999999999874 6799999999999999999999999998775432 3468
Q ss_pred HHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 77 TEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 77 ~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
++++.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 132 ~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~ 169 (692)
T cd01385 132 EQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRE 169 (692)
T ss_pred HHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECC
Confidence 88999999999999999999999999999999999973
No 8
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=2.8e-35 Score=228.68 Aligned_cols=113 Identities=60% Similarity=0.977 Sum_probs=105.5
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHH
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQ 79 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~ 79 (114)
+||+|+++++..|++....++|||+|++++.||+.|.. ..+|+|+|+|+||||||+..|.++.++...++.....+.++
T Consensus 46 ~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~ 125 (677)
T cd01387 46 MFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQ 125 (677)
T ss_pred CCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHH
Confidence 47999999999999999999999999999999999874 67999999999999999999999999998765555668899
Q ss_pred HhhhchHHHhhCCcccCCCCCCCCceeeEEEEec
Q psy7658 80 ILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK 113 (114)
Q Consensus 80 i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~ 113 (114)
+.+++|||||||||||.+|+||||||||++|+|+
T Consensus 126 il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~ 159 (677)
T cd01387 126 ILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE 159 (677)
T ss_pred HHHHHHHHHHHhCcCCCCCCCccccceEEEEEec
Confidence 9999999999999999999999999999999995
No 9
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=5.6e-35 Score=226.14 Aligned_cols=114 Identities=45% Similarity=0.723 Sum_probs=105.5
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHH
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQ 79 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~ 79 (114)
+||+|+++++..|+++.+.+.|||+|++++.||+.|. ...+|+|+|+||||||||+.+|.+++++...++.....++++
T Consensus 45 ~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~ 124 (653)
T cd01379 45 QLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEK 124 (653)
T ss_pred CCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHH
Confidence 4789999999999999999999999999999999987 467999999999999999999999999987655445568899
Q ss_pred HhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 80 ILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 80 i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+.+++|||||||||||.+|+||||||||++|+|++
T Consensus 125 il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~ 159 (653)
T cd01379 125 ILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTR 159 (653)
T ss_pred HHHHHHHHHHhhccCcCCCCCcccceeEEEEEECC
Confidence 99999999999999999999999999999999974
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=6.1e-35 Score=226.77 Aligned_cols=114 Identities=45% Similarity=0.787 Sum_probs=105.7
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc--hhHH
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS--NLIT 77 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~--~~~~ 77 (114)
+||+|+++++..|+++.+.++|||+|++++.||+.|.. ..+|+|+|+|+||||||+..|.++.++...++... ..++
T Consensus 45 ~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~ 124 (674)
T cd01378 45 QLPIYTDETIELYKGKSRYELPPHIYALADNAYRSMKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVK 124 (674)
T ss_pred CCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHH
Confidence 57999999999999999999999999999999999885 67999999999999999999999999998876543 3588
Q ss_pred HHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 78 EQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 78 ~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+++.+++|||||||||||.+|+||||||||++|+|++
T Consensus 125 ~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~ 161 (674)
T cd01378 125 DVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDF 161 (674)
T ss_pred HHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECC
Confidence 8999999999999999999999999999999999973
No 11
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=6.9e-35 Score=226.26 Aligned_cols=114 Identities=50% Similarity=0.895 Sum_probs=105.0
Q ss_pred CCC-CCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC---chh
Q psy7658 1 MYD-MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP---SNL 75 (114)
Q Consensus 1 ~l~-iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~---~~~ 75 (114)
+|| +|+.+++..|+++...++|||+|++++.||++|.. ..+|+|+|+|+||||||+..|.++.++...++.. ...
T Consensus 46 ~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~ 125 (674)
T cd01384 46 RLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRT 125 (674)
T ss_pred cCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCccccc
Confidence 467 99999999999999999999999999999999885 6699999999999999999999999998876543 235
Q ss_pred HHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 76 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 76 ~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+++++.+++|||||||||||.+|+||||||||++|+|++
T Consensus 126 i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~ 164 (674)
T cd01384 126 VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDD 164 (674)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECC
Confidence 889999999999999999999999999999999999973
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.2e-34 Score=226.31 Aligned_cols=113 Identities=54% Similarity=0.887 Sum_probs=104.2
Q ss_pred CCC-CCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHH
Q psy7658 1 MYD-MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITE 78 (114)
Q Consensus 1 ~l~-iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~ 78 (114)
++| +|+.+++..|+++...++|||+|++++.||+.|.. ..+|+|+|+|+||||||+..+.++.++....+.. ..+++
T Consensus 49 ~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~-~~i~~ 127 (717)
T cd01382 49 DIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG-QDIDD 127 (717)
T ss_pred cccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC-ccHHH
Confidence 355 99999999999999999999999999999999874 6799999999999999999999999998776543 45789
Q ss_pred HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
++.+++|||||||||||.+|+||||||||++|+|++
T Consensus 128 ~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~ 163 (717)
T cd01382 128 RIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 163 (717)
T ss_pred HHHHHHHHHHHhhccccCCCCCcccceeEEEEEECC
Confidence 999999999999999999999999999999999974
No 13
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=2.2e-34 Score=224.27 Aligned_cols=114 Identities=53% Similarity=0.853 Sum_probs=107.2
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHH
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQ 79 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~ 79 (114)
++|+|+++++..|+++...++|||+|++++.||+.|.. ..+|+|+|+|+||||||+..+.++.++...++.....+.++
T Consensus 45 ~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~ 124 (679)
T cd00124 45 DLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEK 124 (679)
T ss_pred CCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHH
Confidence 47899999999999999999999999999999999885 67999999999999999999999999998877666678999
Q ss_pred HhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 80 ILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 80 i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 125 i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~ 159 (679)
T cd00124 125 ILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDE 159 (679)
T ss_pred HHHHhHHHHHhcccccCCCCCcccceeEEEEEECC
Confidence 99999999999999999999999999999999973
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=2.8e-34 Score=223.47 Aligned_cols=114 Identities=54% Similarity=0.888 Sum_probs=106.0
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC--chhHH
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP--SNLIT 77 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~--~~~~~ 77 (114)
++|+|+++++..|+++...++|||+|++++.||+.|.. ..+|+|+|+|+||||||+..+.++.++...++.. ...++
T Consensus 51 ~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~ 130 (677)
T smart00242 51 QLPIYTDEVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVE 130 (677)
T ss_pred cCCCCCHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHH
Confidence 47899999999999999999999999999999999885 6699999999999999999999999999887654 45688
Q ss_pred HHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 78 EQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 78 ~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+++.+++|||||||||+|.+|+||||||||++|+|++
T Consensus 131 ~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~ 167 (677)
T smart00242 131 DQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFDA 167 (677)
T ss_pred HHHHHHHHHHHHhhccccCCCCCccchheeEEEEECC
Confidence 9999999999999999999999999999999999973
No 15
>KOG0161|consensus
Probab=100.00 E-value=2.3e-34 Score=237.48 Aligned_cols=114 Identities=50% Similarity=0.841 Sum_probs=106.3
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC----c--
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP----S-- 73 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~----~-- 73 (114)
|||||+..++.+|+|+++.++|||||++++.||++|. ..++|+|.|+|+||+|||++++.++.|+...++.. .
T Consensus 127 ~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~ 206 (1930)
T KOG0161|consen 127 RLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIE 206 (1930)
T ss_pred CCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCC
Confidence 7999999999999999999999999999999999987 57899999999999999999999999998876532 1
Q ss_pred hhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 74 NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 74 ~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
..+.++|.+++|+||+||||+|.+|+||||||+||+++|+.
T Consensus 207 ~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~ 247 (1930)
T KOG0161|consen 207 GTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDA 247 (1930)
T ss_pred CChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCC
Confidence 46889999999999999999999999999999999999973
No 16
>KOG0164|consensus
Probab=100.00 E-value=6.5e-34 Score=216.61 Aligned_cols=113 Identities=47% Similarity=0.829 Sum_probs=104.9
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc----hh
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS----NL 75 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~----~~ 75 (114)
+|+||.++++..|+|...-+.|||+|+++|.||++|.. ..++||+|+||||+|||+..++|+++++...+... ..
T Consensus 53 ql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYrslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eier 132 (1001)
T KOG0164|consen 53 QLNIYGPETIEKYKGREFYERPPHLFAIADAAYRSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIER 132 (1001)
T ss_pred hcCccCHHHHHHhCCeeecccCchHHHhHHHHHHHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHH
Confidence 48999999999999999999999999999999999985 66999999999999999999999999988754332 35
Q ss_pred HHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEec
Q psy7658 76 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK 113 (114)
Q Consensus 76 ~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~ 113 (114)
+++++.+.|+||||||||||.+||||||||||+.++||
T Consensus 133 VKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDInFD 170 (1001)
T KOG0164|consen 133 VKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDINFD 170 (1001)
T ss_pred HHHHHHhcchHHHHhcccccccCCchhhhhcceeeecc
Confidence 78899999999999999999999999999999999997
No 17
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.4e-33 Score=219.08 Aligned_cols=110 Identities=49% Similarity=0.806 Sum_probs=100.5
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHH
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQ 79 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~ 79 (114)
+||+|+.+++..|++... .|||+|++++.||+.|.. ..+|+|+|+|+||||||+..|.++.++...++.. .++++
T Consensus 53 ~l~ly~~~~~~~y~~~~~--~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~--~i~~~ 128 (677)
T cd01383 53 EVPLYGNDYIEAYRKKSN--DSPHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGS--GIEYE 128 (677)
T ss_pred CCCCCCHHHHHHhhCCCC--CCCCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCC--cHHHH
Confidence 478999999999997643 699999999999999985 6799999999999999999999999999876543 57889
Q ss_pred HhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 80 ILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 80 i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 129 il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~ 163 (677)
T cd01383 129 ILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSE 163 (677)
T ss_pred HHHHHHHHHHhhccccCCCCCcCccceeEEEEECC
Confidence 99999999999999999999999999999999973
No 18
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=1e-33 Score=221.03 Aligned_cols=114 Identities=50% Similarity=0.852 Sum_probs=103.0
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc----hh
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS----NL 75 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~----~~ 75 (114)
+||+|+.+++..|+++...++|||||++++.||+.|. ..++|+|+|+|+||||||+..+++++++...+.... ..
T Consensus 44 ~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~ 123 (689)
T PF00063_consen 44 PLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSS 123 (689)
T ss_dssp --STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTH
T ss_pred hhhhhhhhhhhhhhhhccccccCccchhhhcccccccccccccceeeccccccccccchHHHHHHHhhhccccccccccc
Confidence 4789999999999999999999999999999999987 467999999999999999999999999998866544 46
Q ss_pred HHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 76 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 76 ~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+.+++.++++||||||||+|.+|+||||||||++|+|++
T Consensus 124 i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~~ 162 (689)
T PF00063_consen 124 IEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFDD 162 (689)
T ss_dssp HHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEET
T ss_pred ccceEEeccchhhhhcccccccCCcccccceEEEEEecc
Confidence 889999999999999999999999999999999999974
No 19
>KOG0163|consensus
Probab=100.00 E-value=3.7e-33 Score=213.69 Aligned_cols=111 Identities=50% Similarity=0.877 Sum_probs=104.5
Q ss_pred CCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHHHh
Q psy7658 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQIL 81 (114)
Q Consensus 3 ~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~i~ 81 (114)
.+|+++.++.|+|+..+++|||||+++|.+|+.|.+ +..|.|+++|+||+|||+..+.++++++..-|+ ...++.++.
T Consensus 105 ~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~vLrYLces~gs-ag~Iq~ril 183 (1259)
T KOG0163|consen 105 GLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAVLRYLCESWGS-AGPIQTRIL 183 (1259)
T ss_pred cccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHHHHHHHHhccCC-CCcHHHHHh
Confidence 479999999999999999999999999999999985 669999999999999999999999999987766 456889999
Q ss_pred hhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 82 EASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 82 ~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
.+||||||||||||.+|+||||||||+++||++
T Consensus 184 eaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~d 216 (1259)
T KOG0163|consen 184 EANPILEAFGNAKTLRNNNSSRFGKFVEIHFDD 216 (1259)
T ss_pred ccChHHHHhccchhhccCChhhccceEEEEEcC
Confidence 999999999999999999999999999999985
No 20
>KOG0162|consensus
Probab=99.97 E-value=3.5e-32 Score=207.68 Aligned_cols=114 Identities=41% Similarity=0.710 Sum_probs=106.6
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc--hhHH
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS--NLIT 77 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~--~~~~ 77 (114)
.||+|....+..|.|+.+-+.|||||++++..|++|.. .++||++|+||||+|||..++.|++++...+|... ..++
T Consensus 63 ~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vk 142 (1106)
T KOG0162|consen 63 QMPYFTEKEMELYQGAAQYENPPHIYALADNMYRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGGEKVQHVK 142 (1106)
T ss_pred ccccchHHHHHHhhchhhccCCchhhhhHHHHHHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCCcchhhhh
Confidence 47999999999999999999999999999999999985 78999999999999999999999999998876544 3688
Q ss_pred HHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 78 EQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 78 ~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+.|.+.||+||+||||||.+|+||||||||++++|+.
T Consensus 143 diiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~Fs~ 179 (1106)
T KOG0162|consen 143 DIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQFSR 179 (1106)
T ss_pred hHhhccchHHHHhcchhhhccCCcccccceEEEEecC
Confidence 9999999999999999999999999999999999974
No 21
>KOG0160|consensus
Probab=99.92 E-value=6.3e-26 Score=177.70 Aligned_cols=111 Identities=50% Similarity=0.859 Sum_probs=103.1
Q ss_pred CC-CCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc-hhHHH
Q psy7658 2 YD-MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS-NLITE 78 (114)
Q Consensus 2 l~-iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~-~~~~~ 78 (114)
+| +|+.+.+..|. ...+++.||+|++++.+|++|.. ..+|.|+++|+||+|||...+.+++++...++... ..++.
T Consensus 54 ~~~ly~~~~i~~y~-~~~~~l~ph~favA~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~ 132 (862)
T KOG0160|consen 54 LPHLYGKKMISAYQ-AIQGELSPHLFAVAEEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIEN 132 (862)
T ss_pred cchhccHHHHHhhc-ccccccCcchhhHHHHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhccchhhHHHH
Confidence 56 89999999999 88889999999999999999985 55899999999999999999999999999887633 46899
Q ss_pred HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEec
Q psy7658 79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK 113 (114)
Q Consensus 79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~ 113 (114)
++..++||+|+||||+|.+|+||||||||++++|+
T Consensus 133 ~vL~snpi~EafgNakT~rndnsSrFgK~iei~Fd 167 (862)
T KOG0160|consen 133 KVLASNPILEAFGNAKTTRNDNSSRFGKVIEITFD 167 (862)
T ss_pred HHHhcCCcchhhccchhhhcccHHHhhhHHHHhhh
Confidence 99999999999999999999999999999999997
No 22
>KOG4229|consensus
Probab=99.89 E-value=8.3e-24 Score=169.03 Aligned_cols=113 Identities=50% Similarity=0.791 Sum_probs=104.2
Q ss_pred CCC-CCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHH
Q psy7658 1 MYD-MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITE 78 (114)
Q Consensus 1 ~l~-iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~ 78 (114)
++| +|.+..+..|.+..+++.|||||++++.+|++|.. ..+|||+++|+||+|||+.++++.+++...+.......+.
T Consensus 106 ~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~ 185 (1062)
T KOG4229|consen 106 PIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQ 185 (1062)
T ss_pred cccccccHHhhccccccccCCCCcchhhhhhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhh
Confidence 467 99999999999999999999999999999999986 8899999999999999999999999999987433345678
Q ss_pred HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEec
Q psy7658 79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK 113 (114)
Q Consensus 79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~ 113 (114)
.+..++++||+||||+|+.|+||||||+|+++.|.
T Consensus 186 ~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~ 220 (1062)
T KOG4229|consen 186 LILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFR 220 (1062)
T ss_pred hhhcchHHHHHhcccCCcccCchhhhhheEEeccc
Confidence 89999999999999999999999999999999985
No 23
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.79 E-value=3.5e-09 Score=73.92 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||++++++++..+..|.
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~ 59 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 457899999999999999999999999999998875
No 24
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.71 E-value=7.8e-09 Score=75.42 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=34.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|+.++++|||||||||++++|+++..+.+|..
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I 60 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4578899999999999999999999999999998865
No 25
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.70 E-value=8.1e-09 Score=75.72 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=34.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|+++.++|||||||||++|+|+++..+.+|..
T Consensus 26 l~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I 62 (352)
T COG3842 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62 (352)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4578899999999999999999999999999998854
No 26
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.66 E-value=1.3e-08 Score=71.80 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=33.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+|++++|+|||||||||++|.+.+++.+..|..
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V 59 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE
Confidence 4577899999999999999999999999999988754
No 27
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.62 E-value=2.2e-08 Score=69.81 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=33.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|||||||||+++.++++..+..|+.
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I 64 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI 64 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Confidence 4478899999999999999999999999999988764
No 28
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.61 E-value=2.6e-08 Score=68.53 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=33.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++|+|||||||||++|++.++..+.+|..
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I 59 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE
Confidence 4478899999999999999999999999999988865
No 29
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.59 E-value=3.4e-08 Score=68.52 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|+.++|+|||||||||+++++.++..+.+|.
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~ 61 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 557899999999999999999999999999988775
No 30
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.58 E-value=3.3e-08 Score=67.69 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+||+||||+++++++++.+..|+.
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i 61 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV 61 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE
Confidence 5578899999999999999999999999998877753
No 31
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.58 E-value=5.4e-08 Score=68.80 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=43.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchh--------HHHHHhhhchHHHhhC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNL--------ITEQILEASPLLESFG 91 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~--------~~~~i~~~~~ileafg 91 (114)
|.+.++++++|+|||||||||+.+.++++..+..|...-. ..++......+|+..|
T Consensus 34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vg 97 (268)
T COG4608 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVG 97 (268)
T ss_pred EEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhC
Confidence 6688999999999999999999999999999998865311 2233344555667666
No 32
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.57 E-value=3.6e-08 Score=66.31 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++|+|++||||||+++++++.+.+..|..
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 49 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV 49 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeE
Confidence 5578899999999999999999999999998877743
No 33
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.57 E-value=3.9e-08 Score=67.05 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+||+||||+++++++++.+..|..
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV 58 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 5578899999999999999999999999998877743
No 34
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.56 E-value=3.5e-08 Score=69.44 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=35.4
Q ss_pred hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
++++ +.+.++++++|+||||+||||++|.+++++.+..|+.
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i 61 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE
Confidence 5555 4478899999999999999999999999999887754
No 35
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.55 E-value=5.1e-08 Score=66.95 Aligned_cols=37 Identities=24% Similarity=0.203 Sum_probs=33.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+|||||||+++++++.+.+.+|..
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i 44 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF 44 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE
Confidence 5578899999999999999999999999998888764
No 36
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.55 E-value=4.3e-08 Score=66.68 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+|||||||+++++++++.+..|..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 57 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI 57 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 5578899999999999999999999999998877753
No 37
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=4.4e-08 Score=66.94 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
|...+|++++|+|+||+||||+++++++++.+.+|+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~ 56 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE 56 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 557889999999999999999999999999887764
No 38
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.55 E-value=4.7e-08 Score=66.80 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~ 58 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ 58 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 557889999999999999999999999998877764
No 39
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.54 E-value=4.4e-08 Score=67.06 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+|||||||+++++++++.+..|+.
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 60 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI 60 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 5578899999999999999999999999998877643
No 40
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=4.8e-08 Score=67.72 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|+|||||||+++++++++.+..|.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~ 56 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE 56 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 557899999999999999999999999999887764
No 41
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.52 E-value=6.1e-08 Score=66.13 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|+|||||||+++++++++.+..|.
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~ 56 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGT 56 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 557889999999999999999999999999877764
No 42
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.52 E-value=5.1e-08 Score=66.60 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+||+||||+++++++++.+..|..
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i 56 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI 56 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence 5578899999999999999999999999998877753
No 43
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.52 E-value=5.6e-08 Score=65.98 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++.+.+..|+
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 54 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQ 54 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 557789999999999999999999999999887774
No 44
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=5.1e-08 Score=66.98 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|+||+||||+++++++.+.+..|+
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 60 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 557899999999999999999999999998877764
No 45
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=5.4e-08 Score=66.83 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|+||+||||+++++++.+.+.+|.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~ 56 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR 56 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 556789999999999999999999999998877764
No 46
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.52 E-value=5.1e-08 Score=66.53 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|+||+||||+++++++++.+..|.
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 57 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT 57 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 557889999999999999999999999998877764
No 47
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.52 E-value=5.2e-08 Score=67.47 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|+|||||||+++++++++.+..|.
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~ 56 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS 56 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCce
Confidence 557889999999999999999999999999877774
No 48
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.52 E-value=9.1e-08 Score=65.48 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=37.3
Q ss_pred hhhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 31 AAYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 31 ~~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
+|.++ |...+|+++++.||+|+||||++|++..++.+.+|...
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~ 60 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEE
Confidence 45555 45788999999999999999999999999999988653
No 49
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.52 E-value=6e-08 Score=67.43 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+|||||||+++++++++.+.+|..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (243)
T TIGR02315 23 LNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59 (243)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE
Confidence 5578899999999999999999999999998877743
No 50
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.52 E-value=6.2e-08 Score=66.67 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++.+.+..|.
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 61 (228)
T cd03257 26 FSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61 (228)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 557889999999999999999999999999887774
No 51
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=5.8e-08 Score=66.20 Aligned_cols=37 Identities=14% Similarity=0.340 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++||||||+++++++.+.+..|+.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (210)
T cd03269 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57 (210)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 5578999999999999999999999999988777643
No 52
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.51 E-value=8.4e-08 Score=64.13 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=33.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+..|+.++|+|||||||||++|.++.+..+..|..
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l 60 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceE
Confidence 5578899999999999999999999999999988754
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=7.1e-08 Score=66.74 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=33.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+||+||||+++.+++.+.+..|..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 62 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV 62 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 5678899999999999999999999999998887753
No 54
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.51 E-value=6.8e-08 Score=66.73 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|+|||||||+++++++.+.+.+|.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 56 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 557789999999999999999999999999887774
No 55
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.51 E-value=6.3e-08 Score=66.45 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+|||||||+++++++++.+..|..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 57 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 5578899999999999999999999999998877643
No 56
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.51 E-value=8.3e-08 Score=66.15 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=32.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh-----hhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL-----AAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~-----~~~~g~ 71 (114)
+...+|++++|+|+|||||||+++++++++ .+..|+
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~ 61 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE 61 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeE
Confidence 557889999999999999999999999998 776664
No 57
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.50 E-value=7e-08 Score=66.22 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++.+.+..|..
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 62 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV 62 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 5578999999999999999999999999998877743
No 58
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=7.3e-08 Score=66.87 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|+|||||||+++++++++.+..|.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 57 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS 57 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence 557889999999999999999999999999877764
No 59
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.50 E-value=6.8e-08 Score=69.54 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=33.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.++.++.+++.|||||||||++++|+++..+..|..
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I 59 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE
Confidence 4578899999999999999999999999999998865
No 60
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.50 E-value=7.6e-08 Score=64.58 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+||+||||+++++++++.+..|..
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 56 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEE
Confidence 4567899999999999999999999999998877754
No 61
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.50 E-value=7.6e-08 Score=66.39 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++++.+..|.
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~ 66 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGE 66 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCee
Confidence 557889999999999999999999999999887774
No 62
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.50 E-value=7.4e-08 Score=66.05 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+||+||||+++++++.+.+..|..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 5578899999999999999999999999998877743
No 63
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=7.5e-08 Score=67.79 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|+|||||||+++++++++.+..|.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 57 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS 57 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 557889999999999999999999999999877764
No 64
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.49 E-value=7.3e-08 Score=65.80 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++|+||||+++.+++.+.+.+|+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~ 56 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR 56 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 557889999999999999999999999998877764
No 65
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=7.3e-08 Score=67.00 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|+||+||||+++++++++.+..|.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 58 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58 (239)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 557889999999999999999999999998877664
No 66
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.49 E-value=7e-08 Score=69.48 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+|++++|+|+|||||||+++++++++.+.+|..
T Consensus 14 ~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i 50 (302)
T TIGR01188 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA 50 (302)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 5578899999999999999999999999998887743
No 67
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.49 E-value=8.9e-08 Score=65.40 Aligned_cols=41 Identities=29% Similarity=0.454 Sum_probs=35.2
Q ss_pred hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
++++ +.+..++.+++.|||||||||+++++.++..+..|..
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i 62 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE
Confidence 4444 4467899999999999999999999999999988754
No 68
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.49 E-value=7.8e-08 Score=66.41 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++||||||+++++++++.+..|+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (230)
T TIGR03410 21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI 57 (230)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 5578899999999999999999999999998877743
No 69
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.49 E-value=9.5e-08 Score=63.20 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++++.+..|..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 5578899999999999999999999999998877754
No 70
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=7.3e-08 Score=66.79 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.++++++|+|+||+||||+++++++++.+..|+
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~ 65 (233)
T PRK11629 30 FSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGD 65 (233)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 557889999999999999999999999998877664
No 71
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=8.3e-08 Score=64.05 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++.+.+..|..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 5578899999999999999999999999988877753
No 72
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.48 E-value=7.7e-08 Score=66.77 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++|+||||+++++++...+.+|..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i 58 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 4578899999999999999999999999998877743
No 73
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.48 E-value=9.7e-08 Score=65.93 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++...+..|..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 64 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE
Confidence 5578999999999999999999999999988777743
No 74
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.48 E-value=8.7e-08 Score=64.77 Aligned_cols=38 Identities=13% Similarity=0.304 Sum_probs=33.6
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
++...+|++++|+|++|+||||+++++++.+.+..|..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI 57 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 36678899999999999999999999999988877743
No 75
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.48 E-value=8.8e-08 Score=66.38 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+||+||||+++++++++.+.+|..
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 42 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV 42 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 5577899999999999999999999999998877753
No 76
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=8.6e-08 Score=65.40 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=33.3
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
++...++++++|+|++|+||||+++++++.+.+..|.
T Consensus 18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~ 54 (211)
T cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGR 54 (211)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 3667899999999999999999999999999887774
No 77
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.48 E-value=8.9e-08 Score=65.58 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+||+||||+++++++.+.+..|..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 62 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA 62 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence 5577899999999999999999999999988877743
No 78
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.48 E-value=9e-08 Score=65.12 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++.+.+.+|..
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v 58 (204)
T PRK13538 22 FTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEV 58 (204)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 5578899999999999999999999999998887753
No 79
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.47 E-value=9.7e-08 Score=67.38 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=34.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+++.++++|+|||||||++|+|-+++.+.+|..
T Consensus 22 l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I 58 (309)
T COG1125 22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58 (309)
T ss_pred EEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE
Confidence 5578999999999999999999999999999998865
No 80
>PRK10908 cell division protein FtsE; Provisional
Probab=98.47 E-value=8.3e-08 Score=66.01 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+||+||||+++++++.+.+.+|+.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 59 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 5578999999999999999999999999998877743
No 81
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.47 E-value=9e-08 Score=63.14 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|.|++|+||||+++++++...+..|..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v 57 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 5578999999999999999999999999998877743
No 82
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.47 E-value=1e-07 Score=65.56 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++++.+..|.
T Consensus 29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~ 64 (224)
T TIGR02324 29 LTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGR 64 (224)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence 557889999999999999999999999999887764
No 83
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.47 E-value=8.9e-08 Score=67.60 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 33 l~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i 69 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL 69 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 4577899999999999999999999999998877753
No 84
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.47 E-value=6.2e-08 Score=61.62 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=32.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++.+.+...+..|..
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i 42 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSI 42 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEE
T ss_pred EEEcCCCEEEEEccCCCccccceeeeccccccccccc
Confidence 4577899999999999999999999999998876643
No 85
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.46 E-value=1.3e-07 Score=63.89 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+..+++++|+|+||+||||++++|.++..+.+|..
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i 56 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE
Confidence 3467899999999999999999999999999998754
No 86
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.46 E-value=1.1e-07 Score=64.60 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++...+..|.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~ 57 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE 57 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCee
Confidence 557899999999999999999999999999887774
No 87
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.46 E-value=1.1e-07 Score=64.92 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|++|+||||+++++++...+..|..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 59 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI 59 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 5578899999999999999999999999988777743
No 88
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.46 E-value=9.9e-08 Score=64.96 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++|+||||+++++++.+.+.+|.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 56 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGE 56 (208)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 556789999999999999999999999998877764
No 89
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.46 E-value=1.4e-07 Score=62.65 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++.+++...+..|..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 59 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 5578899999999999999999999999998887754
No 90
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.1e-07 Score=66.14 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|+||+||||+++++.+.+.+..|.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 57 (242)
T cd03295 22 LEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE 57 (242)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 557899999999999999999999999998887764
No 91
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.45 E-value=9.6e-08 Score=68.68 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=33.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++++|+|||||||+++++++++.+.+|+.
T Consensus 26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i 62 (293)
T COG1131 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62 (293)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 4578899999999999999999999999999887753
No 92
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=1.3e-07 Score=62.70 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++.+++++.+..|..
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i 59 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence 5578899999999999999999999999998887744
No 93
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.1e-07 Score=66.20 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+|||||||+++++++.+.+..|+.
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 60 (241)
T PRK14250 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 5577899999999999999999999999998877743
No 94
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.2e-07 Score=66.04 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=32.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
|...+|++++|+|+||+||||+++++.+.+.+.+|.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~ 59 (241)
T PRK10895 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGN 59 (241)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 557889999999999999999999999999887774
No 95
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=1.3e-07 Score=65.29 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++.+.+..|..
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 60 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 4578899999999999999999999999998887754
No 96
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.45 E-value=1e-07 Score=68.61 Aligned_cols=37 Identities=11% Similarity=0.308 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+.+|..
T Consensus 25 l~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i 61 (303)
T TIGR01288 25 FTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61 (303)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 4578899999999999999999999999998777643
No 97
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.45 E-value=1.2e-07 Score=64.41 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|++|+||||+++++++++.+..|..
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (201)
T cd03231 21 FTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV 57 (201)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 5578899999999999999999999999998877744
No 98
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.44 E-value=1.1e-07 Score=66.10 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|+||+||||+++++++++.+.+|.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~ 57 (240)
T PRK09493 22 LNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGD 57 (240)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 557889999999999999999999999999877774
No 99
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.44 E-value=1.4e-07 Score=62.92 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=33.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++.+++...+..|+.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 59 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE
Confidence 5578999999999999999999999999998877754
No 100
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.2e-07 Score=67.77 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|+|||||||+++++++++.+..|.
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 67 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ 67 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 557889999999999999999999999999887764
No 101
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.44 E-value=1.2e-07 Score=66.15 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=34.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.++++.+|+|+||+||||++|.|++++.+..|..
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI 65 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence 5578999999999999999999999999999998865
No 102
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=1.2e-07 Score=62.99 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=32.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++.+++.+.+..|..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 5578899999999999999999999999988777643
No 103
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.44 E-value=1.4e-07 Score=63.93 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++|+||||+++.+++.+.+..|.
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 56 (198)
T TIGR01189 21 FTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGE 56 (198)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccE
Confidence 557889999999999999999999999998877764
No 104
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.44 E-value=1.3e-07 Score=63.37 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++.+.+.+..|..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI 57 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4578899999999999999999999999998887753
No 105
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.44 E-value=1.1e-07 Score=68.67 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++.+.+|.
T Consensus 28 l~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~ 63 (306)
T PRK13537 28 FHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGS 63 (306)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 557889999999999999999999999999888774
No 106
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.2e-07 Score=65.93 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++|+||||+++++++...+..|.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 58 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 557889999999999999999999999998877764
No 107
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.2e-07 Score=67.27 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|+||+||||+++++++.+.+..|.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 57 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGA 57 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccE
Confidence 557789999999999999999999999999887774
No 108
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.43 E-value=1.2e-07 Score=65.89 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++.+.+..|..
T Consensus 42 ~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i 78 (236)
T cd03267 42 FTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV 78 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 5577899999999999999999999999988877643
No 109
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.43 E-value=1.4e-07 Score=65.41 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++||||||+++++++.+.+..|+.
T Consensus 24 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i 60 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60 (238)
T ss_pred EEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE
Confidence 5578899999999999999999999999998887753
No 110
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.43 E-value=1.5e-07 Score=63.91 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|.|++|+||||+++.+++...+..|..
T Consensus 26 ~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i 62 (204)
T cd03250 26 LEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV 62 (204)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE
Confidence 5578999999999999999999999999998877744
No 111
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.43 E-value=1.4e-07 Score=66.78 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=33.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+||+||||+++++++.+.+.+|..
T Consensus 34 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i 70 (267)
T PRK15112 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL 70 (267)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 5578999999999999999999999999998887753
No 112
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=3.1e-07 Score=63.33 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=39.0
Q ss_pred Ceeeeehhhhhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658 23 PHLFAIGSAAYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVN 69 (114)
Q Consensus 23 phiy~~~~~~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~ 69 (114)
-.+|.....+++. |...++++.+++|||||||||++|.+-++.....
T Consensus 13 l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~ 61 (253)
T COG1117 13 LNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP 61 (253)
T ss_pred eeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCc
Confidence 3566667778776 4578899999999999999999999999887665
No 113
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=1.3e-07 Score=67.01 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++||||||+++++++.+.+..|.
T Consensus 45 ~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~ 80 (269)
T cd03294 45 LDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 557789999999999999999999999999887764
No 114
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.43 E-value=1.4e-07 Score=66.12 Aligned_cols=37 Identities=30% Similarity=0.316 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+||+||||+++++.+++.+..|..
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 60 (253)
T TIGR02323 24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA 60 (253)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 5578899999999999999999999999998877643
No 115
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.43 E-value=1.3e-07 Score=66.26 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
|...++++++|+|+||+||||+++++++.+.+.+|.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 56 (252)
T TIGR03005 21 FSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQ 56 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 557899999999999999999999999999887764
No 116
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.43 E-value=1.4e-07 Score=66.28 Aligned_cols=37 Identities=32% Similarity=0.302 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++|+||||+++++++.+.+..|..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 63 (258)
T PRK11701 27 FDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63 (258)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 5578999999999999999999999999998877743
No 117
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.43 E-value=1.4e-07 Score=66.69 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++|+||||+++++++++.+.+|..
T Consensus 32 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 68 (265)
T TIGR02769 32 LSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV 68 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 5578999999999999999999999999998877743
No 118
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.4e-07 Score=65.30 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=33.8
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
++...+|++++|+|++|+||||+++++++.+.+.+|..
T Consensus 19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 56 (232)
T PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL 56 (232)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 46678999999999999999999999999998877743
No 119
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.43 E-value=1.5e-07 Score=62.86 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++.+++.+..|..
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v 56 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI 56 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 5578899999999999999999999999998877743
No 120
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.43 E-value=1.3e-07 Score=67.14 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+||+||||+++++++++.+.+|..
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (272)
T PRK15056 28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 4577899999999999999999999999998877754
No 121
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=1.2e-07 Score=67.38 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|+||+||||+++++++.+.+..|.
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~ 63 (280)
T PRK13649 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGS 63 (280)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 557889999999999999999999999999887764
No 122
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.42 E-value=1.5e-07 Score=66.36 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++|+||||+++++++.+.+..|..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i 59 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 5578899999999999999999999999998877743
No 123
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.42 E-value=1.7e-07 Score=64.32 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++...+..|..
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 61 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV 61 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE
Confidence 4578899999999999999999999999988777743
No 124
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.42 E-value=1.6e-07 Score=65.13 Aligned_cols=37 Identities=38% Similarity=0.498 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++++.+..|..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (237)
T cd03252 23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV 59 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 5578899999999999999999999999998877743
No 125
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.42 E-value=1.5e-07 Score=65.41 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++.+.+.+|.
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~ 58 (242)
T TIGR03411 23 LYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGS 58 (242)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence 557899999999999999999999999998887774
No 126
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.42 E-value=1.5e-07 Score=64.51 Aligned_cols=37 Identities=16% Similarity=0.380 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+||+||||+++++.+.+.+..|..
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 68 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI 68 (214)
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE
Confidence 5578899999999999999999999999998877743
No 127
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.42 E-value=2.6e-07 Score=62.68 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=39.5
Q ss_pred eeeehhhhhhhc--hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 25 LFAIGSAAYSAL--ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 25 iy~~~~~~~~~l--~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
-|..+..|++.+ .+.+++.+.++|+||+||||++|++.+...+..|+.
T Consensus 10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i 59 (223)
T COG2884 10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59 (223)
T ss_pred hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE
Confidence 344454576664 478899999999999999999999999999888764
No 128
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=1.7e-07 Score=64.84 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++|+||||+++++++.+.+..|..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 59 (234)
T cd03251 23 LDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59 (234)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE
Confidence 4577899999999999999999999999998877743
No 129
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.42 E-value=1.5e-07 Score=64.33 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=33.3
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
++...+|++++|.|++|+||||+++++++.+.+..|+
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 54 (213)
T TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGS 54 (213)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 3667899999999999999999999999999887774
No 130
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=1.5e-07 Score=67.26 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~ 63 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGT 63 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 557889999999999999999999999999888774
No 131
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.42 E-value=1.5e-07 Score=65.73 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=32.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|+||+||||+++++++.+.+..|.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 59 (250)
T PRK11264 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT 59 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 457789999999999999999999999998877664
No 132
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.42 E-value=1.9e-07 Score=63.55 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++++.+..|..
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 65 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI 65 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE
Confidence 4578899999999999999999999999998877754
No 133
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.41 E-value=1.4e-07 Score=61.10 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|.|++|+||||+++.+.+++.+..|..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE
Confidence 5578899999999999999999999999998777643
No 134
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.41 E-value=1.6e-07 Score=66.05 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|+||+||||+++++++.+.+.+|.
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~ 60 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV 60 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 557889999999999999999999999999887764
No 135
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.41 E-value=1.5e-07 Score=66.63 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++.+.+..|.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 63 (269)
T PRK11831 28 LTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGE 63 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 557889999999999999999999999999887764
No 136
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.41 E-value=2.1e-08 Score=69.94 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=34.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++++||+|+||||+++.+.+++.+.+|..
T Consensus 25 l~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v 61 (250)
T COG0411 25 LEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61 (250)
T ss_pred EEEcCCeEEEEECCCCCCceeeeeeecccccCCCceE
Confidence 5578899999999999999999999999999998865
No 137
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1.5e-07 Score=65.90 Aligned_cols=36 Identities=19% Similarity=0.389 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|+||+||||+++++++++.+..|.
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~ 61 (255)
T PRK11300 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGT 61 (255)
T ss_pred eEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcce
Confidence 456789999999999999999999999999888774
No 138
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1.6e-07 Score=66.55 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++|+||||+++++++.+.+.+|.
T Consensus 30 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~ 65 (269)
T PRK13648 30 FNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 457889999999999999999999999999887764
No 139
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.41 E-value=1.8e-07 Score=64.11 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++.+.+..|..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 58 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE
Confidence 5577899999999999999999999999998777643
No 140
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.41 E-value=1.6e-07 Score=64.65 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++|+||||+++++++.+.+..|.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 56 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGE 56 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 557889999999999999999999999998877774
No 141
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1.7e-07 Score=66.42 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++++.+..|.
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 65 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 457889999999999999999999999999887774
No 142
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.41 E-value=1.9e-07 Score=64.36 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++|+||||+++++++.+.+..|.
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 70 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ 70 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcE
Confidence 457889999999999999999999999999887774
No 143
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.41 E-value=1.5e-07 Score=65.49 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=38.1
Q ss_pred eeeehhhhhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 25 LFAIGSAAYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 25 iy~~~~~~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
.|.....+..+ +.+.++|.++|+|+||+||||++|++.++..+..|..
T Consensus 12 ~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i 61 (258)
T COG3638 12 TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61 (258)
T ss_pred ecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE
Confidence 44444445554 4478899999999999999999999999888887753
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=1.6e-07 Score=66.41 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|...++++++|+|+||+||||+++++++.+.+..|..
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 68 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence 5578899999999999999999999999988777753
No 145
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.40 E-value=1.9e-07 Score=64.01 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++...+..|..
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 61 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI 61 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence 5578899999999999999999999999988887754
No 146
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=1.7e-07 Score=67.12 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 28 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i 64 (287)
T PRK13637 28 IEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64 (287)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Confidence 5578899999999999999999999999998877743
No 147
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.40 E-value=1.8e-07 Score=68.61 Aligned_cols=36 Identities=11% Similarity=0.327 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
|.+.+|++++|+|+||+||||+++++++++.+.+|.
T Consensus 62 ~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~ 97 (340)
T PRK13536 62 FTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGK 97 (340)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceE
Confidence 446789999999999999999999999999888774
No 148
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=1.7e-07 Score=66.62 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+||+||||+++++++++.+..|..
T Consensus 23 l~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i 59 (275)
T PRK13639 23 FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence 5578999999999999999999999999998877743
No 149
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.40 E-value=1.7e-07 Score=69.02 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++|+|+|||||||++++|++++.+.+|..
T Consensus 23 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I 59 (353)
T PRK10851 23 LDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI 59 (353)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 5578899999999999999999999999998887753
No 150
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=2e-07 Score=65.13 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=34.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
|...+|+.++|+|++||||||++|++.+.+.|..|...
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~ 85 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK 85 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEE
Confidence 55789999999999999999999999999999988653
No 151
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.40 E-value=1.8e-07 Score=64.70 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh----hCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA----VNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~----~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++.+.+ ..|..
T Consensus 7 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i 47 (230)
T TIGR02770 7 LSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI 47 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE
Confidence 55778999999999999999999999999987 56643
No 152
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=1.5e-07 Score=69.36 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+|||||||++++|+++..+.+|..
T Consensus 25 l~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I 61 (356)
T PRK11650 25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61 (356)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE
Confidence 5578899999999999999999999999998887743
No 153
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.40 E-value=1.8e-07 Score=65.32 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=30.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
+...+|++++|+|+||+||||+++++++.+.+.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 22 LDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 557889999999999999999999999999775
No 154
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=1.7e-07 Score=66.99 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+||+||||+++++++.+.+.+|.
T Consensus 28 l~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~ 63 (287)
T PRK13641 28 FELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT 63 (287)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 557899999999999999999999999999888774
No 155
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=2.1e-07 Score=64.43 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++|+||||+++++.+.+.+..|..
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v 58 (236)
T cd03253 22 FTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE
Confidence 5577899999999999999999999999998887743
No 156
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=1.6e-07 Score=65.12 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++|+||||+++++.+.+.+.+|..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i 62 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE
Confidence 5578899999999999999999999999998877743
No 157
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=1.9e-07 Score=66.36 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+||+||||+++++++++.+..|..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 59 (274)
T PRK13644 23 LVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59 (274)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 4578899999999999999999999999998877743
No 158
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=1.8e-07 Score=68.18 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+|++++|+|+|||||||+++++++++.+.+|..
T Consensus 36 l~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i 72 (327)
T PRK11308 36 FTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL 72 (327)
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEE
Confidence 5578899999999999999999999999998776643
No 159
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=1.9e-07 Score=66.52 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (279)
T PRK13650 28 FHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64 (279)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 5578999999999999999999999999998887743
No 160
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=1.6e-07 Score=68.83 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+|++++|+|+|||||||+++++++++.+.+|..
T Consensus 26 l~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I 62 (343)
T PRK11153 26 LHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV 62 (343)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 5578999999999999999999999999998877743
No 161
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.39 E-value=1.7e-07 Score=64.81 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++|+||||+++++++.+.+..|.
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~ 78 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGT 78 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 557899999999999999999999999998877664
No 162
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=2e-07 Score=68.60 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+|||||||++++|+++..+..|..
T Consensus 27 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I 63 (351)
T PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63 (351)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE
Confidence 5578899999999999999999999999999887753
No 163
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=2e-07 Score=66.32 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+|||||||+++++++++.+.+|..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 62 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE
Confidence 4578899999999999999999999999998877743
No 164
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.38 E-value=1.8e-07 Score=68.87 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+|||||||++++|+++..+.+|+.
T Consensus 25 ~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I 61 (353)
T TIGR03265 25 LSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI 61 (353)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE
Confidence 5567899999999999999999999999998887743
No 165
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=2.2e-07 Score=66.26 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|++|+||||+++++++.+.+.+|..
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i 64 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 5578899999999999999999999999998887743
No 166
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=2e-07 Score=66.29 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+||+||||+++++++.+.+.+|..
T Consensus 25 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i 61 (277)
T PRK13652 25 FIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61 (277)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 4578899999999999999999999999998887753
No 167
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=2.1e-07 Score=67.26 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++.+++.+..|..
T Consensus 28 l~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i 64 (305)
T PRK13651 28 VEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI 64 (305)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 5578899999999999999999999999998887753
No 168
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.38 E-value=2e-07 Score=71.59 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+|++++|+|+|||||||+.|+++++..+.+|..
T Consensus 312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i 348 (539)
T COG1123 312 FDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSI 348 (539)
T ss_pred eEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4578999999999999999999999999999977654
No 169
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.38 E-value=2.7e-07 Score=64.73 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=31.3
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
..++++++|+|+||+||||+++++++.+.+..|..
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i 56 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI 56 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence 45799999999999999999999999998887754
No 170
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.37 E-value=2.1e-07 Score=68.03 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+|++++|+|+|||||||++++|++++.+.+|..
T Consensus 42 l~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I 78 (331)
T PRK15079 42 LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV 78 (331)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEE
Confidence 5578999999999999999999999999998877743
No 171
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.37 E-value=1.9e-07 Score=67.23 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|...+|++++|+|++|+||||+++++++++.+..|..
T Consensus 23 ~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i 59 (301)
T TIGR03522 23 FEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV 59 (301)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 5578899999999999999999999999998887743
No 172
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.37 E-value=2.1e-07 Score=65.39 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|+||+||||+++++++++.+.+|+
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~ 61 (257)
T PRK10619 26 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGS 61 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 557899999999999999999999999999887774
No 173
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.37 E-value=1.9e-07 Score=69.10 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|+|||||||+++++++++.+.+|.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~ 59 (369)
T PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59 (369)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 457789999999999999999999999999887774
No 174
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.37 E-value=2.3e-07 Score=64.48 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=30.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh--hhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL--AAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~--~~~~g~ 71 (114)
+...+|++++|+|+|||||||+++++++++ .+..|.
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~ 58 (243)
T TIGR01978 21 LTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGT 58 (243)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcce
Confidence 557889999999999999999999999985 455553
No 175
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.37 E-value=2.1e-07 Score=65.95 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++.+.+..|.
T Consensus 45 ~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~ 80 (264)
T PRK13546 45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGK 80 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 557899999999999999999999999998887764
No 176
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=2.3e-07 Score=65.16 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++.+.+..|..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE
Confidence 5578899999999999999999999999988877743
No 177
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.37 E-value=2e-07 Score=63.54 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=31.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++ +++|+|+||+||||+++++.+++.+..|+.
T Consensus 21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 56 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56 (211)
T ss_pred EEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence 456678 999999999999999999999998877643
No 178
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.8e-07 Score=62.27 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=33.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+....++.+.|.|++|+||||++|++.+++.+.+|+.
T Consensus 23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v 59 (209)
T COG4133 23 FTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV 59 (209)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE
Confidence 4467899999999999999999999999999998865
No 179
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.37 E-value=2.2e-07 Score=65.63 Aligned_cols=37 Identities=14% Similarity=0.299 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++|+||||+++++++.+.+..|..
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 64 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV 64 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE
Confidence 5578899999999999999999999999998877743
No 180
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.36 E-value=2.3e-07 Score=63.99 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=31.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh---hhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA---AVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~---~~~g~ 71 (114)
+...++++++|+|+||+||||+++++.+.+. +.+|.
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~ 66 (226)
T cd03234 28 LHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQ 66 (226)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceE
Confidence 4578899999999999999999999999987 56553
No 181
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.36 E-value=2.2e-07 Score=68.37 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=33.0
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
++...++++++|+|+|||||||+++++++++.+..|.
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~ 54 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGR 54 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 3567889999999999999999999999999887764
No 182
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.36 E-value=2.5e-07 Score=64.32 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++.+++.+.+.+|+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~ 56 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGR 56 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 557899999999999999999999999998877664
No 183
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.36 E-value=2.4e-07 Score=63.37 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=32.0
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
++...+ ++++|+|++|+||||+++++++++.+..|.
T Consensus 18 sl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 53 (214)
T cd03297 18 DFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGT 53 (214)
T ss_pred eEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 366778 999999999999999999999999877764
No 184
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.36 E-value=2.4e-07 Score=65.08 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++.+.+..|.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~ 57 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT 57 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCE
Confidence 457889999999999999999999999999887774
No 185
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=2.5e-07 Score=66.26 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=32.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|++|+||||+++++.+.+.+.+|.
T Consensus 27 l~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 62 (288)
T PRK13643 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGK 62 (288)
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 557899999999999999999999999999888774
No 186
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.36 E-value=3.1e-07 Score=63.36 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=31.6
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
...+|++++|+|++||||||+++++.+...+.+|..
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 37 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTV 37 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 356799999999999999999999999988877743
No 187
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=2.7e-07 Score=67.11 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=35.0
Q ss_pred hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
++++ +.+.+|++++|+|++||||||+++++++++.+.+|..
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I 83 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI 83 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 4554 4468899999999999999999999999998887743
No 188
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.35 E-value=3.2e-07 Score=64.73 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=34.8
Q ss_pred hhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 32 AYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 32 ~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+. ..++++++|+|+||+||||+++++++++.+..|..
T Consensus 16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I 57 (255)
T cd03236 16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF 57 (255)
T ss_pred hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence 334443 56899999999999999999999999999888865
No 189
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.35 E-value=2.2e-07 Score=68.93 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|.|+|||||||++++|++++.+..|..
T Consensus 35 l~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I 71 (375)
T PRK09452 35 LTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71 (375)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 4577899999999999999999999999998877643
No 190
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.35 E-value=2.4e-07 Score=67.98 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+|||||||+++++.+++.+.+|..
T Consensus 26 l~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I 62 (343)
T TIGR02314 26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV 62 (343)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 5578899999999999999999999999999887753
No 191
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.35 E-value=2.6e-07 Score=62.93 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=31.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh---hhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA---AVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~---~~~g~ 71 (114)
+...++++++|+|++||||||+++++.+++. +.+|.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~ 66 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD 66 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceE
Confidence 4578899999999999999999999999988 55664
No 192
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=3.1e-07 Score=63.38 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+....|++.+|+||||+||||+++.+.+.+.+.+|..
T Consensus 22 l~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v 58 (259)
T COG4559 22 LDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58 (259)
T ss_pred eeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeE
Confidence 4467899999999999999999999999999888754
No 193
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.35 E-value=2.8e-07 Score=65.32 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++|+||||+++++++...+.+|.
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~ 68 (268)
T PRK10419 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN 68 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 557889999999999999999999999998887774
No 194
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.35 E-value=2.4e-07 Score=68.13 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=33.0
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
++...+|++++|+|+|||||||+++++++++.+..|.
T Consensus 17 sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~ 53 (354)
T TIGR02142 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGE 53 (354)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 3567889999999999999999999999999887764
No 195
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=2.8e-07 Score=66.03 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+||+||||+++++.+.+.+..|..
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV 64 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 4578999999999999999999999999998877743
No 196
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=3e-07 Score=65.64 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++++.+..|.
T Consensus 27 ~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~ 62 (283)
T PRK13636 27 INIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR 62 (283)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccE
Confidence 557889999999999999999999999999887774
No 197
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.33 E-value=2.4e-07 Score=64.20 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=33.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++++|+||+||||+++.|+++..+.+|+.
T Consensus 24 l~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I 60 (237)
T COG0410 24 LEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60 (237)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE
Confidence 5578899999999999999999999999999887654
No 198
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.33 E-value=3e-07 Score=62.20 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=32.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh--hhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL--AAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~--~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++.+ .+..|..
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i 68 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV 68 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE
Confidence 457889999999999999999999999998 7777643
No 199
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.33 E-value=3e-07 Score=70.60 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=33.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+..++|+.++|+|+|||||||+++.+++++.+..|+.
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 392 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 4468899999999999999999999999999988765
No 200
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=2.9e-07 Score=68.83 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.++++++|+|+|||||||+++++.+++.+.+|..
T Consensus 49 l~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I 85 (400)
T PRK10070 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQV 85 (400)
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEE
Confidence 5578899999999999999999999999998887743
No 201
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.33 E-value=3.5e-07 Score=64.22 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=31.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh----hCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA----VNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~----~~g~ 71 (114)
+...+|++++|+|+||+||||+++++.+.+.+ ..|.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~ 63 (254)
T PRK10418 24 LTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGR 63 (254)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCE
Confidence 55788999999999999999999999999887 5554
No 202
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.33 E-value=2.7e-07 Score=68.18 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=33.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+|++++|+|+|||||||+++++.+++.+.+|..
T Consensus 14 ~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I 50 (363)
T TIGR01186 14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI 50 (363)
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE
Confidence 5678999999999999999999999999999887743
No 203
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.32 E-value=3.7e-07 Score=69.57 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+|||||||+++++++.+.+..|..
T Consensus 24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i 60 (490)
T PRK10938 24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER 60 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE
Confidence 5578899999999999999999999999998877754
No 204
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.32 E-value=3.6e-07 Score=65.41 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
|...+|++++|+|++|+||||+++++++.+.+..|+
T Consensus 58 ~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~ 93 (282)
T cd03291 58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGK 93 (282)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 446889999999999999999999999998887774
No 205
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=3.5e-07 Score=65.16 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|++|+||||+++++.+.+.+..|..
T Consensus 31 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 67 (280)
T PRK13633 31 LEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV 67 (280)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 5578899999999999999999999999998887743
No 206
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.32 E-value=4.3e-07 Score=63.90 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|++|+||||+++++++++.+..|+.
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 78 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI 78 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE
Confidence 4578999999999999999999999999998877753
No 207
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=4.5e-07 Score=63.50 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=28.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+...+|++++|+|+||+||||++++++++..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4578899999999999999999999999864
No 208
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=3.1e-07 Score=68.20 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.++++++|.|+|||||||++++|+++..+..|.
T Consensus 40 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~ 75 (377)
T PRK11607 40 LTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQ 75 (377)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 457789999999999999999999999999888774
No 209
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.31 E-value=3.6e-07 Score=65.00 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=30.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
+.+.+|++++|+|+||+||||+++++++.+.+.
T Consensus 22 l~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 22 LRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 557889999999999999999999999998775
No 210
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.31 E-value=3.5e-07 Score=68.45 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+|++++|+|+||+||||+++++.+++.+.+|..
T Consensus 24 ~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I 60 (402)
T PRK09536 24 LSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60 (402)
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE
Confidence 5578999999999999999999999999998887743
No 211
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.31 E-value=4.2e-07 Score=62.49 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++|+||||+++.+.+++.+.+|..
T Consensus 26 ~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i 62 (220)
T TIGR02982 26 LEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL 62 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 4567899999999999999999999999988877743
No 212
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=4.3e-07 Score=64.62 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++|+||||+++++.+++.+.+|..
T Consensus 28 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i 64 (277)
T PRK13642 28 FSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64 (277)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence 4578899999999999999999999999998887743
No 213
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=4.4e-07 Score=63.56 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=29.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|++++|+|+||+||||+++++++.+.+
T Consensus 25 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 25 LKIPQNGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 55788999999999999999999999999875
No 214
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=4.6e-07 Score=64.68 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=31.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVN 69 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~ 69 (114)
+.+.+|++++|+|++|+||||+++++++++.+..
T Consensus 28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~ 61 (282)
T PRK13640 28 FSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61 (282)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCC
Confidence 5578899999999999999999999999997765
No 215
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.30 E-value=4.2e-07 Score=63.13 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++|+||||+++++.+.+.+..|.
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~ 55 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK 55 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 457889999999999999999999999998887774
No 216
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.30 E-value=5.3e-07 Score=63.83 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=29.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+.+.+|++++|+|+||+||||+++++.+.+.+
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 71 (267)
T PRK14235 40 LDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDT 71 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 44688999999999999999999999999864
No 217
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.29 E-value=4e-07 Score=67.76 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++|+|+|||||||+++++.+++.+.+|+.
T Consensus 45 f~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I 81 (382)
T TIGR03415 45 LDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV 81 (382)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 5578999999999999999999999999998887743
No 218
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.29 E-value=4.4e-07 Score=72.07 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=34.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
+...+||.++|+|+|||||||++|++.++..+..|...
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~ 531 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 44788999999999999999999999999999988753
No 219
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=5.1e-07 Score=62.56 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++.+.+..|.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~ 56 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE 56 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 456789999999999999999999999999887764
No 220
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.29 E-value=5.9e-07 Score=63.72 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=28.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+...+|++++|+|+||+||||+++++++.+.
T Consensus 45 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4468899999999999999999999999986
No 221
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.29 E-value=5.3e-07 Score=63.51 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=28.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+...+|++++|+|+||+||||+++++++.+.
T Consensus 34 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4578899999999999999999999999975
No 222
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.28 E-value=4.4e-07 Score=63.80 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=29.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|++++|+|+|||||||+++++.+.+.+
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~ 56 (258)
T PRK14241 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV 56 (258)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 55788999999999999999999999999863
No 223
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=5.8e-07 Score=63.57 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=27.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+...+|++++|+|+||+||||++++++++..
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSINRMND 72 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4467899999999999999999999999764
No 224
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.28 E-value=4.2e-07 Score=69.51 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|...+|++++|+|+|||||||+++++++++.+..|..
T Consensus 25 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i 61 (501)
T PRK10762 25 LNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI 61 (501)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 4577899999999999999999999999998877753
No 225
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.28 E-value=5.8e-07 Score=69.68 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+..++|+.++|+|+||+||||+++++++++.+..|..
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I 400 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE
Confidence 3467899999999999999999999999999988754
No 226
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.27 E-value=4.9e-07 Score=66.82 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC--CC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVN--KS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~--g~ 71 (114)
+.+.++++++|+|+|||||||++++++++..+.+ |.
T Consensus 26 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~ 63 (362)
T TIGR03258 26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGR 63 (362)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEE
Confidence 4567899999999999999999999999998887 64
No 227
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=6e-07 Score=63.64 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=28.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
|.+.+|++++|+|+|||||||+++++++++.
T Consensus 34 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 34 CDIPRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4578899999999999999999999999875
No 228
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.27 E-value=5e-07 Score=69.95 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++.+.+..|..
T Consensus 28 ~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i 64 (556)
T PRK11819 28 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA 64 (556)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4578899999999999999999999999998877753
No 229
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=5.7e-07 Score=62.86 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=29.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|++++|+|++|+||||+++++++++.+
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 55 (250)
T PRK14262 24 MKIFKNQITAIIGPSGCGKTTLLRSINRMNDH 55 (250)
T ss_pred EeecCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 55788999999999999999999999998763
No 230
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.27 E-value=4.9e-07 Score=69.23 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 284 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 320 (510)
T PRK09700 284 FSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI 320 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence 3467899999999999999999999999998777654
No 231
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.26 E-value=5.1e-07 Score=63.15 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=30.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHH--hhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQY--LAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~--~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++. +.+..|.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~ 65 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGD 65 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCce
Confidence 55788999999999999999999999997 3455553
No 232
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=6.4e-07 Score=62.61 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=29.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...++++++|+|++||||||+++++.+.+.+
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 55 (250)
T PRK14247 24 LEIPDNTITALMGPSGSGKSTLLRVFNRLIEL 55 (250)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 55788999999999999999999999999864
No 233
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.26 E-value=4.6e-07 Score=69.38 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+|||||||+++++++++.+..|..
T Consensus 26 ~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i 62 (510)
T PRK09700 26 LTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE
Confidence 4578899999999999999999999999998877643
No 234
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=6.4e-07 Score=62.64 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=28.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+...+|++++|+|++|+||||+++++++.+.
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 25 LDFEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 5578899999999999999999999999985
No 235
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.26 E-value=5.5e-07 Score=65.74 Aligned_cols=33 Identities=36% Similarity=0.478 Sum_probs=30.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
|.+.+|++++|+|+|||||||+++++++++.+.
T Consensus 37 l~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~ 69 (330)
T PRK09473 37 FSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 69 (330)
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 557889999999999999999999999999764
No 236
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=5.5e-07 Score=69.28 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus 22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~ 57 (530)
T PRK15064 22 VKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGN 57 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 557889999999999999999999999999877664
No 237
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=5e-07 Score=71.07 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
|.+.+|++++|+|+|||||||+++++++.+.+..|.
T Consensus 22 ~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~ 57 (638)
T PRK10636 22 ATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGS 57 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 557889999999999999999999999998887764
No 238
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=6.4e-07 Score=62.80 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=29.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|++++|+|+||+||||+++++++.+.+
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 45788999999999999999999999999875
No 239
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.25 E-value=5.5e-07 Score=70.62 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
|.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus 37 ~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~ 72 (623)
T PRK10261 37 FSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGL 72 (623)
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeE
Confidence 457889999999999999999999999999877664
No 240
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=6.9e-07 Score=62.96 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=31.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
+...++++++|+|++|+||||+++++.+...+..|
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G 65 (257)
T PRK14246 31 IKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS 65 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence 45678999999999999999999999999887764
No 241
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=5.8e-07 Score=65.50 Aligned_cols=32 Identities=34% Similarity=0.464 Sum_probs=29.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
|.+.+|++++|+|+|||||||+++.+++++.+
T Consensus 28 l~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~ 59 (326)
T PRK11022 28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY 59 (326)
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 55789999999999999999999999999863
No 242
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.25 E-value=7.2e-07 Score=63.14 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=28.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
|...+|++++|+|++||||||+++++.+.+.
T Consensus 41 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 41 MQFEKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4467899999999999999999999999985
No 243
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=6.8e-07 Score=65.20 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=28.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
|.+.+|++++|+|+|||||||+++++++++.
T Consensus 28 l~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 28 MTLTEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 5578999999999999999999999999986
No 244
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.25 E-value=6.6e-07 Score=60.78 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=30.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh--hhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL--AAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~--~~~~g~ 71 (114)
+...++++++|+|++|+||||+++.+++.. .+..|+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~ 58 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE 58 (200)
T ss_pred eEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccE
Confidence 557889999999999999999999999984 455553
No 245
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=8.2e-07 Score=62.15 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=28.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|++++|+|++|+||||+++++++...+
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (251)
T PRK14270 25 LPIYENKITALIGPSGCGKSTFLRCLNRMNDL 56 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence 45678999999999999999999999998764
No 246
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.24 E-value=5.7e-07 Score=68.98 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++.+++.+..|..
T Consensus 32 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i 68 (510)
T PRK15439 32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68 (510)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 4467899999999999999999999999998877653
No 247
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=6.6e-07 Score=60.42 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=30.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh--hhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA--AVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~--~~~g~ 71 (114)
+...++++++|+|++|+||||+++++++... +..|.
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~ 65 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE 65 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Confidence 5578899999999999999999999998753 44553
No 248
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.23 E-value=5.8e-07 Score=62.68 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=30.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh--hhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL--AAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~--~~~~g~ 71 (114)
+.+.++++++|+|++|+||||+++++++.. .+..|+
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~ 59 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT 59 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceE
Confidence 557889999999999999999999999985 455553
No 249
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=7.2e-07 Score=62.76 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=28.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|++++|+|++|+||||+++++.+++.+
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 64 (258)
T PRK14268 33 MQIPKNSVTALIGPSGCGKSTFIRCLNRMNDL 64 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 45788999999999999999999999998764
No 250
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.23 E-value=8.3e-07 Score=59.87 Aligned_cols=38 Identities=32% Similarity=0.325 Sum_probs=34.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
|...++++++|+|||||||||+++.+...+.+..|...
T Consensus 27 F~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~ 64 (258)
T COG4107 27 FDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64 (258)
T ss_pred eeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEE
Confidence 55678999999999999999999999999999988653
No 251
>PRK13409 putative ATPase RIL; Provisional
Probab=98.23 E-value=8e-07 Score=69.41 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=40.0
Q ss_pred CCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 22 SPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 22 ~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
.-|.|.-...++..+. ..+|++++|+|+||+||||+++++++.+.+..|...
T Consensus 79 ~~~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 79 PVHRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred ceEEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 4566643222444443 578999999999999999999999999998888754
No 252
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.23 E-value=1.1e-06 Score=58.95 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=24.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~ 62 (114)
+...++++++|.|+|||||||+++.++
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 557889999999999999999999875
No 253
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.23 E-value=7.2e-07 Score=70.52 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=33.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+..++|+.++|+|+|||||||+++.+++++.+..|..
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I 510 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 4468899999999999999999999999999988854
No 254
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.22 E-value=6.1e-07 Score=68.41 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 19 ~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i 55 (491)
T PRK10982 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI 55 (491)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEE
Confidence 5578899999999999999999999999998877653
No 255
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=8.1e-07 Score=57.99 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=31.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++|+||||+++.+.+.+.+..|.
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~ 55 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE 55 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccE
Confidence 456789999999999999999999999998776663
No 256
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.22 E-value=7.8e-07 Score=62.69 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=29.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
|...+|++++|+|++|+||||+++++++.+.+.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~ 57 (262)
T PRK09984 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGD 57 (262)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 456789999999999999999999999998764
No 257
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.22 E-value=7.2e-07 Score=69.98 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 345 ~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I 381 (623)
T PRK10261 345 FDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEI 381 (623)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEE
Confidence 3467899999999999999999999999998777654
No 258
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=8.9e-07 Score=61.86 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=28.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
|...++++++|+|++|+||||+++++++++.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (246)
T PRK14269 23 MQIEQNKITALIGASGCGKSTFLRCFNRMND 53 (246)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5578899999999999999999999999874
No 259
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.21 E-value=7.4e-07 Score=68.42 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 305 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i 341 (520)
T TIGR03269 305 LEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV 341 (520)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 4467899999999999999999999999998776643
No 260
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.21 E-value=8.5e-07 Score=61.99 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=28.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+...++++++|+|+||+||||+++++++...
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 24 LDIEENQVTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 5578899999999999999999999999765
No 261
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.2e-06 Score=61.21 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=29.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|++++|+|++|+||||+++++.+...+
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (249)
T PRK14253 24 LPIPARQVTALIGPSGCGKSTLLRCLNRMNDL 55 (249)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 45788999999999999999999999998875
No 262
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.21 E-value=1e-06 Score=63.62 Aligned_cols=32 Identities=34% Similarity=0.505 Sum_probs=29.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
|.+.++++++|+||||||||++.+.+++++..
T Consensus 26 ~~i~~GE~lgiVGESGsGKS~~~~aim~llp~ 57 (316)
T COG0444 26 FELKKGEILGIVGESGSGKSVLAKAIMGLLPK 57 (316)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 55789999999999999999999999999973
No 263
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=8.4e-07 Score=69.82 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++.+.+..|..
T Consensus 333 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i 369 (638)
T PRK10636 333 LNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 3467899999999999999999999999998877753
No 264
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.3e-06 Score=61.50 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=28.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
|.+.+|++++|+|++|+||||+++++++.+.
T Consensus 33 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 33 LSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4577899999999999999999999999886
No 265
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=9.5e-07 Score=61.84 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=30.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
+.+.+|++++|+|++|+||||+++.+++.+.+.
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 57 (251)
T PRK14249 25 MDFPERQITAIIGPSGCGKSTLLRALNRMNDIV 57 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCcc
Confidence 457789999999999999999999999998765
No 266
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=9.4e-07 Score=62.43 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=29.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|++++|+|++|+||||+++++.+++.+
T Consensus 29 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (261)
T PRK14263 29 VPIRKNEITGFIGPSGCGKSTVLRSLNRMNDL 60 (261)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHccccc
Confidence 45788999999999999999999999999865
No 267
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.1e-06 Score=61.52 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=28.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+.+.+|++++|+|++||||||+++++.+...
T Consensus 26 ~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 26 LDIYKREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4577899999999999999999999999875
No 268
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.20 E-value=9.9e-07 Score=59.91 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=33.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|...++|.++++|++||||||+.+++.+.+.+.+|..
T Consensus 34 FtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i 70 (267)
T COG4167 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI 70 (267)
T ss_pred EEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE
Confidence 4567899999999999999999999999999998865
No 269
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.20 E-value=7.1e-07 Score=70.13 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=32.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
|.+.+|++++|+|+|||||||+++++++.+.+..|.
T Consensus 24 ~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~ 59 (635)
T PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR 59 (635)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence 557889999999999999999999999998877664
No 270
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.20 E-value=9.3e-07 Score=68.76 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=33.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+..++|+.++|+|+|||||||+++.+++++.+..|..
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I 398 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 3467899999999999999999999999999988754
No 271
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=9.6e-07 Score=63.17 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=28.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+.+.++++++|+|++|+||||+++++++++.
T Consensus 60 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 60 MDIPENQVTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4467899999999999999999999999986
No 272
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.20 E-value=1.1e-06 Score=68.00 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+..++|+.++|+|+||+||||+++.+++++.+..|..
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I 397 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 4468999999999999999999999999999887754
No 273
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.20 E-value=8.5e-07 Score=59.76 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=58.5
Q ss_pred eeeehhhhhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHHHhhhchHHHhhC-CcccCCCCCCCC
Q psy7658 25 LFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFG-NAKTVRNDNSSR 103 (114)
Q Consensus 25 iy~~~~~~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~i~~~~~ileafg-~a~t~~n~nssr 103 (114)
+|.....++..+....+.+|+..|++|+|||..+. +-. ...|-... ..+.+.......+++. ++.|..|++|||
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~---G~~-~~~Giip~-~~~~~~~ll~~g~~~R~~~~t~~N~~SSR 82 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTME---GKR-EGAGIIPR-TVTDVIDLMDKGNANRTTAATAMNEHSSR 82 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecC---CCC-CCCCcchH-HHHHHHHHHhhccccccccccCCCCccCc
Confidence 77666666666665668999999999999997643 111 11222222 2223555556666777 899999999999
Q ss_pred ceeeEEEEec
Q psy7658 104 FGKFLQVHFK 113 (114)
Q Consensus 104 ~~~~~~l~f~ 113 (114)
...+++|++.
T Consensus 83 sH~i~~i~v~ 92 (186)
T cd01363 83 SHSVFRIHFG 92 (186)
T ss_pred ccEEEEEEEE
Confidence 9999999874
No 274
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.20 E-value=9.4e-07 Score=68.38 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++.+.+..|.
T Consensus 26 ~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~ 61 (552)
T TIGR03719 26 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGE 61 (552)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 457889999999999999999999999999887775
No 275
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.20 E-value=7.7e-07 Score=68.06 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++.+++++.+..|..
T Consensus 274 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i 310 (501)
T PRK11288 274 FSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV 310 (501)
T ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE
Confidence 3467899999999999999999999999998776643
No 276
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=1.1e-06 Score=61.53 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=29.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|++++|+|++|+||||+++++.+.+.+
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (252)
T PRK14272 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDL 56 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45788999999999999999999999999864
No 277
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.19 E-value=8.9e-07 Score=67.71 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+||+||||+++++++++.+..|..
T Consensus 25 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I 61 (501)
T PRK11288 25 FDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI 61 (501)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 5578899999999999999999999999988877753
No 278
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.19 E-value=7e-07 Score=62.80 Aligned_cols=37 Identities=16% Similarity=0.360 Sum_probs=33.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.++++.+++|++|+||||.+|+|++++.+..|..
T Consensus 23 f~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I 59 (300)
T COG4152 23 FEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59 (300)
T ss_pred eeecCCeEEEeecCCCCCccchHHHHhccCCccCceE
Confidence 5578899999999999999999999999999987754
No 279
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.18 E-value=1e-06 Score=69.93 Aligned_cols=37 Identities=32% Similarity=0.358 Sum_probs=33.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+|||||||+++++++++.+..|..
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I 536 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI 536 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 4468899999999999999999999999999988854
No 280
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.18 E-value=1.1e-06 Score=67.46 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=31.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh--hhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL--AAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~--~~~~g~ 71 (114)
+...++++++|+|+|||||||+++++++++ .+..|.
T Consensus 21 ~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~ 58 (520)
T TIGR03269 21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58 (520)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceE
Confidence 457889999999999999999999999997 465554
No 281
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.18 E-value=1.1e-06 Score=69.77 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=33.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus 495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I 531 (708)
T TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI 531 (708)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE
Confidence 3467899999999999999999999999999988764
No 282
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.18 E-value=1.2e-06 Score=62.14 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=29.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
|...+|++++|+|++|+||||+++++++++.+
T Consensus 46 ~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~ 77 (272)
T PRK14236 46 MRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDL 77 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45788999999999999999999999999763
No 283
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.18 E-value=1.6e-06 Score=61.30 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=28.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+.+.++++++|+|++|+||||++++++++..
T Consensus 31 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 31 LDIPKNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5578899999999999999999999999875
No 284
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.18 E-value=8.7e-07 Score=62.08 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=29.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
+...++++++|+|++|+||||+++++++.... .|
T Consensus 17 l~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G 50 (248)
T PRK03695 17 AEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SG 50 (248)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-Ce
Confidence 55788999999999999999999999998753 44
No 285
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.17 E-value=9.3e-07 Score=67.61 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 273 l~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I 309 (501)
T PRK10762 273 FTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV 309 (501)
T ss_pred EEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE
Confidence 3467899999999999999999999999988776643
No 286
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.17 E-value=1.1e-06 Score=67.52 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+..++|+.++|+|+|||||||+++.+++++.+..|..
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I 379 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 3467899999999999999999999999999887754
No 287
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=1.1e-06 Score=67.73 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+||+||||+++++++.+.+..|..
T Consensus 340 ~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i 376 (530)
T PRK15064 340 LLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 4467899999999999999999999999988776643
No 288
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=1.5e-06 Score=60.85 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=28.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+...+|++++|+|++||||||+++++++.+.
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 5578899999999999999999999999875
No 289
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.17 E-value=9.4e-07 Score=67.79 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=32.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++|+|+|||||||+++++++++.+..|..
T Consensus 284 l~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i 320 (510)
T PRK15439 284 LEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI 320 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE
Confidence 3467899999999999999999999999988776644
No 290
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.17 E-value=1.3e-06 Score=69.43 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=33.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+..++|+.++|+|+||+||||+++.+.+++.+..|..
T Consensus 502 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 538 (711)
T TIGR00958 502 FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538 (711)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 4478999999999999999999999999999988754
No 291
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=1.2e-06 Score=62.34 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=29.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
|...++++++|+|++|+||||+++++++++.+
T Consensus 42 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p 73 (276)
T PRK14271 42 MGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73 (276)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 45678999999999999999999999999875
No 292
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.16 E-value=1.4e-06 Score=61.58 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=28.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...++++++|+|++|+||||+++++++...+
T Consensus 37 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 68 (265)
T PRK14252 37 MMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL 68 (265)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 44678999999999999999999999998764
No 293
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.16 E-value=1.4e-06 Score=67.26 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+..++|+.++|+|+||+||||+++.+++++.+..|..
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I 389 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 3467899999999999999999999999999988754
No 294
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.16 E-value=1.3e-06 Score=61.02 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=33.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+++.++|.|++||||||+++++.+++.+..|..
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v 61 (235)
T COG1122 25 LEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61 (235)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE
Confidence 4578899999999999999999999999999988764
No 295
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=1e-06 Score=67.47 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=31.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh--hCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA--VNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~--~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++.+ ..|.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~ 63 (506)
T PRK13549 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGE 63 (506)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE
Confidence 45788999999999999999999999999875 4554
No 296
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.16 E-value=1.1e-06 Score=69.04 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+..|++++|+|+|||||||+++++++.+.+..|..
T Consensus 340 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i 376 (635)
T PRK11147 340 AQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376 (635)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 3467899999999999999999999999988777643
No 297
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.16 E-value=1.4e-06 Score=62.39 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=27.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+.+.+|++++|+|++|+||||+++++.++..
T Consensus 60 l~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 90 (286)
T PRK14275 60 ADILSKYVTAIIGPSGCGKSTFLRAINRMND 90 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4467899999999999999999999999754
No 298
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.16 E-value=1.1e-06 Score=62.58 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=34.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
+.+..|++++++|++|+||||++|++.+.+.+.+|...
T Consensus 45 f~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 45778999999999999999999999999999988653
No 299
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.15 E-value=1.1e-06 Score=68.08 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++.+.+..|..
T Consensus 345 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i 381 (556)
T PRK11819 345 FSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381 (556)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 3467899999999999999999999999988777643
No 300
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.15 E-value=1.8e-06 Score=60.75 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=29.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|++++|+|++|+||||+++++++++.+
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~ 59 (259)
T PRK14260 28 MDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL 59 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 45788999999999999999999999998764
No 301
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.15 E-value=1.3e-06 Score=67.90 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+||+||||+++.+++++.+..|..
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I 392 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI 392 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 3467899999999999999999999999999987753
No 302
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.15 E-value=1.2e-06 Score=67.63 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus 344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i 380 (547)
T PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (547)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 3467899999999999999999999999998887754
No 303
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.14 E-value=1.5e-06 Score=67.52 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i 372 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI 372 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE
Confidence 3467899999999999999999999999999888754
No 304
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.14 E-value=1.1e-06 Score=67.06 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|++||||||+++.+.++..+.+|..
T Consensus 269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 305 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTI 305 (491)
T ss_pred EEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEE
Confidence 4467899999999999999999999999998776643
No 305
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.14 E-value=1.1e-06 Score=68.04 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=32.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+..|++++|+|+|||||||+++++++.+.+..|..
T Consensus 343 l~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i 379 (552)
T TIGR03719 343 FKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379 (552)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE
Confidence 3467899999999999999999999999988776643
No 306
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.14 E-value=2e-06 Score=53.26 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~ 62 (114)
+...+++.++|.|+|||||||+++++.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 446778999999999999999999876
No 307
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.14 E-value=1.7e-06 Score=60.54 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=27.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+...+|++++|+|++|+||||+++++.+..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14239 26 LDFYPNEITALIGPSGSGKSTLLRSINRMN 55 (252)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 456789999999999999999999999874
No 308
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.14 E-value=1.4e-06 Score=68.97 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+|||||||+++++++++.+..|..
T Consensus 486 l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I 522 (694)
T TIGR03375 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 3467899999999999999999999999999988754
No 309
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=1.5e-06 Score=62.70 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=28.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+.+.+|++++|+|++|+||||+++++++++.
T Consensus 66 ~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 66 MDIPEKSVTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4467899999999999999999999999875
No 310
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.14 E-value=1.4e-06 Score=67.69 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=31.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+..++|+.++|+|+|||||||+++.+++++ +..|..
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I 406 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSL 406 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEE
Confidence 446789999999999999999999999999 776653
No 311
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.14 E-value=1.3e-06 Score=67.20 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=29.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+.+..|++++|+|+|||||||+++++++++.+
T Consensus 30 l~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~ 61 (529)
T PRK15134 30 LQIEAGETLALVGESGSGKSVTALSILRLLPS 61 (529)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 45678999999999999999999999999975
No 312
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.13 E-value=1.9e-06 Score=61.31 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=28.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+.+.++++++|+|++|+||||+++++++++.
T Consensus 41 ~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~ 71 (274)
T PRK14265 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMND 71 (274)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4467899999999999999999999999875
No 313
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.13 E-value=1.9e-06 Score=60.30 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=27.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+...+|++++|+|++|+||||+++++.+...
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14255 26 LDFNQNEITALIGPSGCGKSTYLRTLNRMND 56 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4567899999999999999999999999764
No 314
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.13 E-value=2.9e-06 Score=61.68 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=35.3
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
++.+.+|++.+|+|-|||||||++|++-++..+.+|+..
T Consensus 48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~il 86 (386)
T COG4175 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL 86 (386)
T ss_pred eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEE
Confidence 366889999999999999999999999999999988653
No 315
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.12 E-value=1.6e-06 Score=67.34 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+||+||||+++.+++++.+..|..
T Consensus 361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 3467899999999999999999999999999988854
No 316
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=1.9e-06 Score=60.76 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
|...++++++|+|++|+||||++++++++..+.
T Consensus 28 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~ 60 (261)
T PRK14258 28 MEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE 60 (261)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 557899999999999999999999999998763
No 317
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=2.3e-06 Score=59.82 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=26.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
+...++++++|+|+||+||||++++++++
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 24 MEIEEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 55788999999999999999999999986
No 318
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.12 E-value=2.3e-06 Score=61.09 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=31.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.++++++|+|++|+||||+++++.+++. ..|.
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~ 59 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE
Confidence 5578999999999999999999999999987 5553
No 319
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=1.5e-06 Score=66.63 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=31.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh-hCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA-VNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~-~~g~ 71 (114)
|.+.+|++++|+|+|||||||+++.+++++.+ .+|.
T Consensus 283 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~ 319 (506)
T PRK13549 283 FSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGE 319 (506)
T ss_pred eEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcE
Confidence 44688999999999999999999999999873 5654
No 320
>PLN03073 ABC transporter F family; Provisional
Probab=98.12 E-value=1.6e-06 Score=69.18 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+..+++++|+|+|||||||+++++++.+.+..|..
T Consensus 530 l~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I 566 (718)
T PLN03073 530 FGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566 (718)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE
Confidence 3467899999999999999999999999998877653
No 321
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.11 E-value=3.6e-06 Score=56.61 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=30.1
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
.+....++.++|+|++||||||+++.+++++.+..+
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~ 54 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAFIPPDER 54 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCC
Confidence 344677899999999999999999999999875443
No 322
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.11 E-value=1.9e-06 Score=66.55 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 375 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 3467899999999999999999999999999887753
No 323
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.10 E-value=1.5e-06 Score=66.34 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=31.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh-hCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA-VNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~-~~g~ 71 (114)
+.+.++++++|+|+|||||||+++++++++.+ ..|.
T Consensus 281 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~ 317 (500)
T TIGR02633 281 FSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317 (500)
T ss_pred eEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 44688999999999999999999999999874 4554
No 324
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=2.2e-06 Score=60.06 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=28.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+...+|++++|+|++|+||||+++++.++..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 4578899999999999999999999999764
No 325
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.10 E-value=1.8e-06 Score=65.91 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=33.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.++++.+++|+||+||||++|++.+.+.+..|..
T Consensus 29 l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I 65 (500)
T COG1129 29 LTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65 (500)
T ss_pred eEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE
Confidence 5578999999999999999999999999999998854
No 326
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.10 E-value=1.5e-06 Score=66.35 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh--hCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA--VNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~--~~g~ 71 (114)
+...+|++++|+|+|||||||+++++++++.+ ..|.
T Consensus 22 l~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~ 59 (500)
T TIGR02633 22 LEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGE 59 (500)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE
Confidence 55788999999999999999999999998875 3453
No 327
>PRK13409 putative ATPase RIL; Provisional
Probab=98.09 E-value=2e-06 Score=67.22 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=31.6
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
..+|++++|+|+||+||||+++++++.+.+..|..
T Consensus 362 i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I 396 (590)
T PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV 396 (590)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 47899999999999999999999999998877754
No 328
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.08 E-value=3.7e-06 Score=57.38 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=26.5
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.+.+.+++|+|++||||||+++.+.+.+..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356899999999999999999999988763
No 329
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=3.4e-06 Score=58.97 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=28.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+...++++++|.|++|+||||++++++++..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 24 LDIPKNSVTALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5577899999999999999999999999864
No 330
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.08 E-value=2.1e-06 Score=66.55 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+||+||||+++.+++++.+..|..
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i 399 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 4467899999999999999999999999999988754
No 331
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.08 E-value=3e-06 Score=56.95 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+..|+|+++-|+||+||||+++.+.+-..++.|+.
T Consensus 32 lsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I 68 (235)
T COG4778 32 LSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQI 68 (235)
T ss_pred EEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceE
Confidence 5678899999999999999999999999888888764
No 332
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.07 E-value=2.6e-06 Score=66.03 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=35.2
Q ss_pred hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
.+++ +..++|+.++|+|+|||||||+++.+.+++.+..|..
T Consensus 344 vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I 386 (567)
T COG1132 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI 386 (567)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE
Confidence 4444 4468899999999999999999999999999987754
No 333
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.07 E-value=2.2e-06 Score=66.10 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|++++|+|++|+||||+++++++.+.+..|.
T Consensus 45 fsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGe 80 (549)
T PRK13545 45 FEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGT 80 (549)
T ss_pred EEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceE
Confidence 457889999999999999999999999999887764
No 334
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.07 E-value=2.4e-06 Score=65.15 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=28.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|++++|+|+|||||||+++++++...+
T Consensus 281 l~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~ 312 (490)
T PRK10938 281 WQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ 312 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc
Confidence 34678999999999999999999999997653
No 335
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.07 E-value=2.5e-06 Score=64.66 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=34.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++.+|+||||+||||+++++.+++.+.+|..
T Consensus 25 l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI 61 (501)
T COG3845 25 LSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61 (501)
T ss_pred eeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE
Confidence 5578999999999999999999999999999998864
No 336
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.07 E-value=3.2e-06 Score=59.26 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=30.8
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
.+.+++.++|.|+|||||||+++++.+...+.+|.
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~ 87 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD 87 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCc
Confidence 36789999999999999999999999999886543
No 337
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.07 E-value=2.5e-06 Score=57.34 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+++.++|+|+|||||||++-.+.++-.+.+|..
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV 67 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV 67 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceE
Confidence 5578899999999999999999999999988887765
No 338
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.07 E-value=2.4e-06 Score=66.62 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+||+||||+++.+++++.+..|+.
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 392 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI 392 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE
Confidence 3467899999999999999999999999999888754
No 339
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.05 E-value=2.7e-06 Score=65.72 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++++++|+|+||+||||+++++.+.+.+..|..
T Consensus 24 l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i 60 (530)
T COG0488 24 LTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60 (530)
T ss_pred ceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE
Confidence 5578899999999999999999999999998888764
No 340
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.04 E-value=3.2e-06 Score=61.08 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=34.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+..|++++|+|.||+||||++|++-++..+.+|+.
T Consensus 27 L~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v 63 (339)
T COG1135 27 LEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63 (339)
T ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE
Confidence 5678999999999999999999999999999988865
No 341
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.04 E-value=2.9e-06 Score=65.31 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=30.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++. ..|+
T Consensus 307 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~ 341 (529)
T PRK15134 307 FTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGE 341 (529)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcE
Confidence 4467899999999999999999999999985 5554
No 342
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3.9e-06 Score=64.33 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=33.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+||.++|+|+|||||||+++.+.+.+.+..|+.
T Consensus 359 l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i 395 (573)
T COG4987 359 LTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI 395 (573)
T ss_pred eeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCee
Confidence 3467899999999999999999999999999988765
No 343
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.03 E-value=3.2e-06 Score=66.79 Aligned_cols=36 Identities=14% Similarity=0.319 Sum_probs=32.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+|+.++|+|++||||||+++++++++.+..|.
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~ 508 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGR 508 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence 346789999999999999999999999998877664
No 344
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.02 E-value=3.6e-06 Score=66.74 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+|||||||+++++++++.+..|..
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I 514 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 3467899999999999999999999999999888754
No 345
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.00 E-value=4.3e-06 Score=62.51 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=33.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+..++|+.+.++|.+||||||+++.+.++..+.+|..
T Consensus 344 l~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I 380 (546)
T COG4615 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (546)
T ss_pred eEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce
Confidence 4478899999999999999999999999999998864
No 346
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.00 E-value=5.9e-06 Score=54.58 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=30.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
+.+.+++++-++|||||||||++..+.+++...
T Consensus 23 ~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~ 55 (213)
T COG4136 23 FTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ 55 (213)
T ss_pred EEecCCcEEEEECCCCccHHHHHHHHHhhcccC
Confidence 457789999999999999999999999999775
No 347
>KOG0058|consensus
Probab=98.00 E-value=5.1e-06 Score=65.44 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=36.3
Q ss_pred hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
.+++ +.+++|++++++||||+||||++.++.++..+.+|...
T Consensus 483 Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred hhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 4444 34789999999999999999999999999999998763
No 348
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.99 E-value=6.7e-06 Score=56.39 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...++.+..++||+|+||||++.++.+++..++|..
T Consensus 22 l~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i 58 (252)
T COG4604 22 LDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58 (252)
T ss_pred eeecCCceeEEECCCCccHHHHHHHHHHhccccCceE
Confidence 4467899999999999999999999999999998865
No 349
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.5e-06 Score=64.34 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=33.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|..++++.++|+|+|||||||+++.+++++.+..|+.
T Consensus 342 ~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I 378 (559)
T COG4988 342 LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI 378 (559)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 4468899999999999999999999999999887764
No 350
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.99 E-value=5.3e-06 Score=70.54 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+|||||||+++++.+++.+..|..
T Consensus 406 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 442 (1466)
T PTZ00265 406 FTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442 (1466)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeE
Confidence 3468899999999999999999999999999988754
No 351
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.97 E-value=5.5e-06 Score=63.30 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=34.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
|....|+.++|+|||||||||+.|.+.+.+.+.+|...
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR 394 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR 394 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEE
Confidence 55778999999999999999999999999999988764
No 352
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=5.4e-06 Score=57.69 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=31.4
Q ss_pred hhhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 31 AAYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 31 ~~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
+.++. +.+..+++.+|.||+||||||+...++++-...
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~ 57 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE 57 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce
Confidence 34444 457899999999999999999999999987443
No 353
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.96 E-value=4.2e-06 Score=63.75 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=26.5
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
.+.+|++++|+|+|||||||+++ .+...+..|
T Consensus 28 ~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sG 59 (504)
T TIGR03238 28 ELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEG 59 (504)
T ss_pred eecCCCEEEEECCCCCCHHHHHh--cCCCCCCCC
Confidence 36789999999999999999999 555555555
No 354
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.96 E-value=9.7e-06 Score=56.17 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=23.3
Q ss_pred hhhhh--chhcCCcEEEEEcCCCCchHHHH
Q psy7658 31 AAYSA--LATSGNQVVVISGESGSGKTECT 58 (114)
Q Consensus 31 ~~~~~--l~~~~~~~i~l~G~sGsGKst~~ 58 (114)
.+.+. +.+.++++++|+|+|||||||++
T Consensus 9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 34444 55789999999999999999996
No 355
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.94 E-value=5.9e-06 Score=63.63 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=30.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
|.+.+||+++|+|||||||||+++.+++++...
T Consensus 30 f~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 567899999999999999999999999999876
No 356
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.93 E-value=1.2e-05 Score=49.93 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=21.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+|+|.|++||||||+++.+...+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999875
No 357
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.93 E-value=8.6e-06 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
++.++|+|++||||||+++.+.+.+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 57899999999999999999988764
No 358
>KOG0055|consensus
Probab=97.91 E-value=8.6e-06 Score=67.47 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=34.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+..|+.++|+|+|||||||+++++.+++.+..|..
T Consensus 374 l~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V 410 (1228)
T KOG0055|consen 374 LKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEV 410 (1228)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceE
Confidence 4578899999999999999999999999999998865
No 359
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.90 E-value=1.3e-05 Score=54.26 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=25.4
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.+++.++|+|++||||||+++.+++.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3589999999999999999999999874
No 360
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.90 E-value=8.7e-06 Score=59.49 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=28.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+.+.+|+.++|+|++||||||+++.+++...
T Consensus 103 ~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~ 133 (329)
T PRK14257 103 LDIKRNKVTAFIGPSGCGKSTFLRNLNQLND 133 (329)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3467899999999999999999999999875
No 361
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.90 E-value=7.4e-06 Score=55.71 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=24.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
+....+++++|+|++|+||||+++.+...
T Consensus 24 ~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 24 INLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 44556799999999999999999999843
No 362
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.89 E-value=1.4e-05 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+++++|+|++||||||+++.++..+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999888764
No 363
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.88 E-value=1.5e-05 Score=53.33 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.++++++.|++||||||+++.+.+.+..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4789999999999999999999998754
No 364
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.87 E-value=6e-07 Score=61.45 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=33.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+..++++++.||+|+||||.+-++.++..+++|..
T Consensus 25 l~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i 61 (243)
T COG1137 25 LEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI 61 (243)
T ss_pred EEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceE
Confidence 6678899999999999999999999999999998864
No 365
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.87 E-value=1.1e-05 Score=62.86 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|+.+.|.||||||||+++|.+.++++...|..
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I 450 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI 450 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce
Confidence 3367899999999999999999999999999888764
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.86 E-value=1.2e-05 Score=62.20 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.4
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
.+..++.|+|+|++|+||||+++++++.+.+..|..
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v 379 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE
Confidence 367899999999999999999999999888776643
No 367
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.86 E-value=1.5e-05 Score=59.72 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
+..+++|.++|+|||||||||+.+.+++++...
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 456789999999999999999999999999876
No 368
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.85 E-value=1.9e-05 Score=52.79 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=34.6
Q ss_pred eehhhhhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 27 AIGSAAYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 27 ~~~~~~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
..+.+++.+ +...+++.+++.||||+|||++++.+--+..+.+|.
T Consensus 12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~ 58 (242)
T COG4161 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58 (242)
T ss_pred cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCe
Confidence 344455554 446789999999999999999999877777776664
No 369
>KOG0057|consensus
Probab=97.85 E-value=1.6e-05 Score=61.21 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=32.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+..|+.++|+|.+||||||++|.+++++. .+|+.
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I 408 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI 408 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE
Confidence 5577899999999999999999999999999 66654
No 370
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.85 E-value=2.3e-05 Score=54.28 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=28.9
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
....+++|.|++||||||+++.+.+.+....|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 346799999999999999999999999887664
No 371
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.85 E-value=1.9e-05 Score=53.88 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=25.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+....+++++|+||||+||||+++.+.+..
T Consensus 20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 20 IDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 445557999999999999999999988755
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.83 E-value=1.9e-05 Score=53.66 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=25.9
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
...++ +++|+|+||+||||+++.+.+++...
T Consensus 19 ~~~~g-~~~i~G~nGsGKStll~al~~l~~~~ 49 (197)
T cd03278 19 PFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQ 49 (197)
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHhccc
Confidence 34556 99999999999999999998887543
No 373
>PLN03073 ABC transporter F family; Provisional
Probab=97.82 E-value=1.2e-05 Score=64.20 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=26.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
|.+..|++++|+|+|||||||+++++.+.
T Consensus 198 l~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 198 VTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 44678999999999999999999999875
No 374
>PLN03232 ABC transporter C family member; Provisional
Probab=97.82 E-value=1.2e-05 Score=68.63 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=35.3
Q ss_pred hhhhc--hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 32 AYSAL--ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 32 ~~~~l--~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+++++ .+.+|+.++|+|+|||||||+++.+++++.+..|+.
T Consensus 1251 vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1293 (1495)
T PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI 1293 (1495)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE
Confidence 44443 467899999999999999999999999999988865
No 375
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.81 E-value=1.7e-05 Score=52.59 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+++++|+|++||||||+++.+++.+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 57899999999999999999998753
No 376
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.81 E-value=1.3e-05 Score=55.54 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=34.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
+.+.+++.+.|+|.+|+||||+++.+.+.+.+.+|...
T Consensus 27 L~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~ 64 (263)
T COG1101 27 LEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQIL 64 (263)
T ss_pred eeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEE
Confidence 44678999999999999999999999999999998753
No 377
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.81 E-value=1.2e-05 Score=70.34 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|++||||||+++++++.+.+.+|..
T Consensus 1960 f~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I 1996 (2272)
T TIGR01257 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996 (2272)
T ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Confidence 3467899999999999999999999999998887754
No 378
>PLN03130 ABC transporter C family member; Provisional
Probab=97.81 E-value=1.2e-05 Score=69.04 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=33.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+++||.++|+|++||||||+++.+.+++.+..|..
T Consensus 1260 ~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I 1296 (1622)
T PLN03130 1260 FEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296 (1622)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 3468899999999999999999999999999988764
No 379
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.80 E-value=1.3e-05 Score=63.39 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...++++++|+|++|+||||+++++++.+.+..|.
T Consensus 29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~ 64 (648)
T PRK10535 29 LDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64 (648)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 557899999999999999999999999999887764
No 380
>KOG0056|consensus
Probab=97.80 E-value=2.1e-05 Score=60.39 Aligned_cols=38 Identities=21% Similarity=0.449 Sum_probs=34.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
+.+.+|+.++++||||+||||++|++.+++...+|...
T Consensus 559 F~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~ 596 (790)
T KOG0056|consen 559 FTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSIT 596 (790)
T ss_pred EEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEE
Confidence 34678999999999999999999999999999888764
No 381
>PLN03211 ABC transporter G-25; Provisional
Probab=97.79 E-value=9.8e-06 Score=64.16 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=30.5
Q ss_pred hhhhc--hhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 32 AYSAL--ATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 32 ~~~~l--~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.++++ ...+|++++|+|+||+||||+++++++.+.+
T Consensus 83 iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~ 120 (659)
T PLN03211 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQG 120 (659)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44443 3678999999999999999999999998765
No 382
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.79 E-value=4.3e-05 Score=42.79 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|+|++|+||||++..+.-.+..
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 458999999999999999988776654
No 383
>KOG0055|consensus
Probab=97.79 E-value=2.1e-05 Score=65.27 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=35.8
Q ss_pred hhhhc--hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 32 AYSAL--ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 32 ~~~~l--~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
.++++ .+..||.++|+|||||||||.+.++-++..+..|..
T Consensus 1005 Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V 1047 (1228)
T KOG0055|consen 1005 VLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047 (1228)
T ss_pred hhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 45554 467899999999999999999999999999998865
No 384
>PTZ00243 ABC transporter; Provisional
Probab=97.78 E-value=1.3e-05 Score=68.55 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=33.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+||.++|+|++||||||+++.+++++.+..|..
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I 1367 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEI 1367 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 3467899999999999999999999999999888764
No 385
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.78 E-value=1.2e-05 Score=70.25 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|++||||||+++++.+++.+.+|..
T Consensus 951 l~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I 987 (2272)
T TIGR01257 951 ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV 987 (2272)
T ss_pred EEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEE
Confidence 3467899999999999999999999999998887753
No 386
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.77 E-value=3.1e-05 Score=52.77 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+..+|+|+|++||||||+++.+.+.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999987
No 387
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.77 E-value=2e-05 Score=67.13 Aligned_cols=37 Identities=27% Similarity=0.545 Sum_probs=32.1
Q ss_pred hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
++++ |.+.+|+.++|+|+|||||||+++++++++.+.
T Consensus 1183 vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~ 1221 (1466)
T PTZ00265 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLK 1221 (1466)
T ss_pred cccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCc
Confidence 4444 447889999999999999999999999999974
No 388
>KOG0060|consensus
Probab=97.77 E-value=2e-05 Score=61.08 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=32.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+++.+++.+.|+|+||||||+++|.+.++|...+|+
T Consensus 456 ~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~ 491 (659)
T KOG0060|consen 456 LEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGK 491 (659)
T ss_pred eEecCCCeEEEECCCCCchhHHHHHHhcccccCCCe
Confidence 457789999999999999999999999999876654
No 389
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.75 E-value=1.8e-05 Score=67.59 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=35.4
Q ss_pred hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
++++ +.+++||.++|+|++||||||+++.+.+++.+..|..
T Consensus 1301 vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I 1343 (1522)
T TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI 1343 (1522)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeE
Confidence 4444 3468999999999999999999999999999888765
No 390
>PLN03232 ABC transporter C family member; Provisional
Probab=97.74 E-value=2.1e-05 Score=67.16 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=32.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+..++|+.++|+|++||||||+++.+++.+.+..|.
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~ 673 (1495)
T PLN03232 638 LEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS 673 (1495)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCC
Confidence 446889999999999999999999999999987763
No 391
>KOG0927|consensus
Probab=97.74 E-value=1.3e-05 Score=61.67 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=43.3
Q ss_pred CCCCCCCeeeeehhhh---------hhhch--hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 17 ILGTLSPHLFAIGSAA---------YSALA--TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 17 ~~~~~~phiy~~~~~~---------~~~l~--~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
.++.+||.+-.+.+.. |..+. +..+..+.++||+|+||||+++++++.+.+..|...
T Consensus 381 ~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs 448 (614)
T KOG0927|consen 381 EVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVS 448 (614)
T ss_pred cccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccc
Confidence 4666776666555433 33433 556899999999999999999999999999887654
No 392
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.73 E-value=3e-05 Score=52.41 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+++|+|++||||||+++.+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 393
>PLN03130 ABC transporter C family member; Provisional
Probab=97.72 E-value=2.7e-05 Score=66.88 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC-CC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVN-KS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~-g~ 71 (114)
+..++|+.++|+|++||||||+++.+++.+.+.. |.
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~ 674 (1622)
T PLN03130 638 LDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674 (1622)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCce
Confidence 4468899999999999999999999999999887 54
No 394
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.72 E-value=3.5e-05 Score=55.82 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=30.1
Q ss_pred hhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658 34 SALATSGNQVVVISGESGSGKTECTKLVMQYLAAVN 69 (114)
Q Consensus 34 ~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~ 69 (114)
..+....+..++++|++||||||+++.+++++....
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~ 172 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE 172 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccc
Confidence 334466789999999999999999999999886543
No 395
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.71 E-value=3e-05 Score=53.63 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+++|.|++||||||+++.+.+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999998864
No 396
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.71 E-value=3.2e-05 Score=53.70 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.+++++|+||||+||||++++|...+.
T Consensus 22 ~~~~~~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 22 SPKHNVVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 368999999999999999999986543
No 397
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.70 E-value=2.4e-05 Score=66.83 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|++||||||+++.+++.+.+..|..
T Consensus 447 l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i 483 (1490)
T TIGR01271 447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI 483 (1490)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4467899999999999999999999999998887753
No 398
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.70 E-value=4.5e-05 Score=51.54 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=23.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
+|+|.|++||||||+++.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 58999999999999999999988754
No 399
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.69 E-value=2.4e-05 Score=66.90 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|++||||||+++.+++.+.+..|..
T Consensus 659 l~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i 695 (1522)
T TIGR00957 659 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence 4467899999999999999999999999998877653
No 400
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.67 E-value=5.3e-05 Score=53.15 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
...+.+|+||||||||++++.+...+...
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~~ 52 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGIT 52 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence 46789999999999999999999998654
No 401
>PTZ00243 ABC transporter; Provisional
Probab=97.65 E-value=2.9e-05 Score=66.51 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|+.++|+|++||||||+++.+++.+.+..|.
T Consensus 681 l~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~ 716 (1560)
T PTZ00243 681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGR 716 (1560)
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 446789999999999999999999999999887665
No 402
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.63 E-value=6.5e-05 Score=46.43 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
++.++|.|++|+|||++++.++..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998887664
No 403
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.58 E-value=8.1e-05 Score=50.29 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.|..++|+||||+||||+++.++...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 57889999999999999999888765
No 404
>PRK07261 topology modulation protein; Provisional
Probab=97.58 E-value=8.3e-05 Score=49.45 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+.|+|+|++|+||||+++.+...+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358999999999999999988765
No 405
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.57 E-value=5.7e-05 Score=64.56 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=30.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|+.++|+|++||||||+++.+++++. ..|.
T Consensus 1240 ~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~ 1274 (1490)
T TIGR01271 1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGE 1274 (1490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE
Confidence 3468899999999999999999999999986 5554
No 406
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.56 E-value=2.4e-05 Score=57.06 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.5
Q ss_pred EEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 46 ISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 46 l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
|+|+|||||||+++++++++.+.+|.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~ 26 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGS 26 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceE
Confidence 57999999999999999999887774
No 407
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.56 E-value=8.2e-05 Score=50.60 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=31.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+....+.+|.|+|.|||||||++++|--+..+..|..
T Consensus 27 L~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I 63 (256)
T COG4598 27 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63 (256)
T ss_pred eecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceE
Confidence 4456799999999999999999999988877777654
No 408
>PRK08118 topology modulation protein; Reviewed
Probab=97.56 E-value=9.4e-05 Score=49.07 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+.|+|+|++||||||+++.+...+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999988753
No 409
>KOG0064|consensus
Probab=97.55 E-value=6.2e-05 Score=58.20 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=32.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+++.+|-.+.|+||+|||||++.|++.++|+...|.
T Consensus 503 f~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~ 538 (728)
T KOG0064|consen 503 FQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGL 538 (728)
T ss_pred EEecCCceEEEECCCCccHHHHHHHHhccCcccCCe
Confidence 456789999999999999999999999999887663
No 410
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.54 E-value=7.9e-05 Score=51.07 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+++++|+|++|+||||+++.+...+
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeE
Confidence 37899999999999999999987533
No 411
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.54 E-value=0.00011 Score=49.92 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=23.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
.++|+|++||||||+++.+++++...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 68899999999999999998888643
No 412
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.54 E-value=5e-05 Score=59.71 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=28.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+...+|++++|+|++||||||+++.+.+...+
T Consensus 46 ~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~ 77 (617)
T TIGR00955 46 GVAKPGELLAVMGSSGAGKTTLMNALAFRSPK 77 (617)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34688999999999999999999999998754
No 413
>PTZ00301 uridine kinase; Provisional
Probab=97.53 E-value=0.0001 Score=50.80 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
-+|+|.|+|||||||+++.+...+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 468999999999999998887655
No 414
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.53 E-value=0.0001 Score=53.06 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
...+|+|.|++||||||+++.+.+.+..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999888863
No 415
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.53 E-value=0.00012 Score=54.11 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=26.8
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..++..++|+|++||||||+++.+++++...
T Consensus 131 ~~~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 131 APQEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3467899999999999999999999988543
No 416
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.53 E-value=0.00012 Score=49.62 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=22.7
Q ss_pred chhcCC-cEEEEEcCCCCchHHHHHHHH
Q psy7658 36 LATSGN-QVVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 36 l~~~~~-~~i~l~G~sGsGKst~~~~i~ 62 (114)
+....+ ++++|+|+||+||||+++.+.
T Consensus 22 ~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 22 IQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEECCCceEEEEECCCCCChHHHHHHHH
Confidence 445555 579999999999999999987
No 417
>PRK08233 hypothetical protein; Provisional
Probab=97.52 E-value=0.00011 Score=48.54 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+|+|.|++||||||+++.+...+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999998874
No 418
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.52 E-value=8.8e-05 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
++++|+||||+||||+++++...
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998743
No 419
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.52 E-value=4.6e-05 Score=64.74 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=27.2
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+|++++|+|+||+||||+++.+++...
T Consensus 786 i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~ 814 (1394)
T TIGR00956 786 VKPGTLTALMGASGAGKTTLLNVLAERVT 814 (1394)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 67899999999999999999999999876
No 420
>PLN03140 ABC transporter G family member; Provisional
Probab=97.52 E-value=4.6e-05 Score=65.01 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=29.0
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..++|++++|+|++||||||+++++++.+.+.
T Consensus 187 ~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~ 218 (1470)
T PLN03140 187 IIKPSRMTLLLGPPSSGKTTLLLALAGKLDPS 218 (1470)
T ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 36789999999999999999999999998664
No 421
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.52 E-value=0.00015 Score=47.98 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=25.7
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.++++++++|.+|+||||+++.+...+..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999998853
No 422
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.50 E-value=0.00015 Score=46.59 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=26.4
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
...+.++++.|+.|+||||+++.+++.+..
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 356889999999999999999999998754
No 423
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.50 E-value=0.00013 Score=48.39 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
-.+++++++|+||+||||+++.+.....
T Consensus 33 l~~k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 33 LKGKTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp HTTSEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3469999999999999999998888643
No 424
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.49 E-value=0.00013 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+|+++|++||||||+++.+...+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 47899999999999999888655
No 425
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.49 E-value=0.00014 Score=41.30 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++++|++|+||||+++.+...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998886
No 426
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.47 E-value=9.9e-05 Score=52.71 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
+++|.|++||||||+++.+.+.+...
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~ 26 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSD 26 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 47899999999999999999887644
No 427
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.47 E-value=0.00012 Score=53.93 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=27.9
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
.+..+..++|+|++||||||+++.+++++...
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~ 189 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQ 189 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCC
Confidence 35678899999999999999999999987653
No 428
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.47 E-value=0.00015 Score=45.18 Aligned_cols=23 Identities=35% Similarity=0.739 Sum_probs=21.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHhh
Q psy7658 44 VVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 44 i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
++|.|++|+|||++++.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999975
No 429
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.46 E-value=0.00015 Score=52.82 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
.+++++++|++|+||||++..++..+...+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~ 144 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKK 144 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCe
Confidence 57899999999999999999999998765443
No 430
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.46 E-value=0.00017 Score=48.28 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
-.+++|+|++||||||+++.++..+..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 347899999999999999999998865
No 431
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.46 E-value=0.00011 Score=47.12 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHhh
Q psy7658 44 VVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 44 i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
++|+|++|+||||+++.+++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999998864
No 432
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.46 E-value=0.00017 Score=47.90 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+.+|+++|++||||||+.+.+...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999888765
No 433
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.45 E-value=0.00018 Score=47.64 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+..|+++|++||||||+++.+...+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999988875
No 434
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.45 E-value=0.00016 Score=44.88 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHh
Q psy7658 44 VVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 44 i~l~G~sGsGKst~~~~i~~~~ 65 (114)
|+|.|.+|+||||+++.+...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999988885
No 435
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.43 E-value=0.00026 Score=44.12 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.+..+.|.|++|+|||++++.+...+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999998874
No 436
>PLN02165 adenylate isopentenyltransferase
Probab=97.42 E-value=0.00022 Score=52.28 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=25.3
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
-..+.+++|+|++|||||+++..+++.+.
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 35578999999999999999999888864
No 437
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.40 E-value=0.0002 Score=52.67 Aligned_cols=32 Identities=25% Similarity=0.556 Sum_probs=26.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+....+..++|+|++||||||+++.+++.+..
T Consensus 117 ~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 117 LAERPRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred HHhhcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 33455789999999999999999999987753
No 438
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.39 E-value=0.00018 Score=49.18 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
..+..++|+|++||||||+++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45788999999999999999988754
No 439
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.38 E-value=0.00021 Score=47.50 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++++.|++||||||+++.+...+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999888443
No 440
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.38 E-value=8.5e-05 Score=63.20 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=26.8
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...+|++++|+|+|||||||+++.+.+..
T Consensus 83 ~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~ 111 (1394)
T TIGR00956 83 LIKPGELTVVLGRPGSGCSTLLKTIASNT 111 (1394)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 36789999999999999999999999986
No 441
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.00027 Score=54.21 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
.+++++++|++|+||||++..++..+....|
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G 285 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHG 285 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999998865544
No 442
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.36 E-value=0.00016 Score=47.30 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHhh
Q psy7658 44 VVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 44 i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
++++|++||||||+++.+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999888763
No 443
>PRK06696 uridine kinase; Validated
Probab=97.35 E-value=0.00023 Score=49.16 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
..-+|+|.|.+||||||+++.+...+..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999988853
No 444
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.34 E-value=0.00027 Score=47.89 Aligned_cols=29 Identities=28% Similarity=0.341 Sum_probs=25.6
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
..+.+++++|.+|+||||+++.+.+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999987743
No 445
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.34 E-value=0.00024 Score=48.01 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+.+++|+||+|+||+|+.+.++...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999988765
No 446
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.34 E-value=0.00025 Score=44.36 Aligned_cols=28 Identities=43% Similarity=0.602 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.+.+++|.|++|+|||++++.+...+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 4678999999999999999998887754
No 447
>PRK06762 hypothetical protein; Provisional
Probab=97.33 E-value=0.00028 Score=46.27 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+++++|++||||||+++.+...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999988776
No 448
>PLN02796 D-glycerate 3-kinase
Probab=97.33 E-value=0.00023 Score=52.40 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
+++|+|++||||||+++.+.+.+...
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~~~ 127 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFNAT 127 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhccc
Confidence 48999999999999999999998654
No 449
>PRK06547 hypothetical protein; Provisional
Probab=97.33 E-value=0.00035 Score=46.67 Aligned_cols=30 Identities=37% Similarity=0.454 Sum_probs=24.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+.......|+|.|++||||||+++.+...+
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 334456778899999999999999988764
No 450
>PRK14527 adenylate kinase; Provisional
Probab=97.32 E-value=0.00031 Score=47.29 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=23.5
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+.++++++.|++||||||+++.+...+
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999887444
No 451
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.31 E-value=0.00033 Score=49.81 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=25.2
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
......++|+|++|+||||+++.++..+..
T Consensus 77 ~~~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 77 EKPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 345668999999999999999988887753
No 452
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.27 E-value=0.00033 Score=49.10 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..+.+|+|+||+|||+++..|...+...
T Consensus 22 ~~~~~i~G~NGsGKStll~ai~~~l~~~ 49 (247)
T cd03275 22 DRFTCIIGPNGSGKSNLMDAISFVLGEK 49 (247)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3589999999999999999999888543
No 453
>PRK06217 hypothetical protein; Validated
Probab=97.27 E-value=0.00031 Score=46.98 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..|+|+|.+||||||+.+.+...+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999888763
No 454
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.27 E-value=0.00036 Score=46.42 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+.|+|+|++|+||||+.+.+...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 4679999999999999999998765
No 455
>PLN03140 ABC transporter G family member; Provisional
Probab=97.27 E-value=0.00017 Score=61.64 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=26.7
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+|++++|+|+|||||||+++.+++...
T Consensus 903 i~~Gel~aL~G~sGaGKTTLL~~LaG~~~ 931 (1470)
T PLN03140 903 FRPGVLTALMGVSGAGKTTLMDVLAGRKT 931 (1470)
T ss_pred EECCeEEEEECCCCCCHHHHHHHHcCCCC
Confidence 57899999999999999999999999864
No 456
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.26 E-value=0.00039 Score=45.45 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
++..|+++|++||||||+.+.+...+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999988876
No 457
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.25 E-value=0.00023 Score=50.82 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+++.|++|+||||+++.+++.+.+..|.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~ 141 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQ 141 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCce
Confidence 688999999999999999999999887664
No 458
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.24 E-value=0.00026 Score=53.37 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=30.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
|.+..|+.++++||||||||..+..++++++..
T Consensus 31 f~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 31 FDIEAGETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred eeecCCCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 557889999999999999999999999999763
No 459
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.00025 Score=51.08 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=30.5
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
.....+.++-|+||+|||+++++|.++..++.|..
T Consensus 21 ~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I 55 (352)
T COG4148 21 LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRI 55 (352)
T ss_pred CCCCceEEEecCCCCChhhHHHHHhccCCccccEE
Confidence 44457899999999999999999999999987754
No 460
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.23 E-value=0.00012 Score=50.80 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=27.1
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHH-HhhhhCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQ-YLAAVNK 70 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~-~~~~~~g 70 (114)
...+++++|+|++|+||||+++.+.. .+.+..|
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G 61 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVALITIMAQIG 61 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCC
Confidence 45689999999999999999999888 4444444
No 461
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.23 E-value=0.00033 Score=46.91 Aligned_cols=24 Identities=50% Similarity=0.578 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+|+|.|.+||||||+++.+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998875
No 462
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00037 Score=48.24 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
-+|+|.|.|||||||+++.+...+.
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999998886
No 463
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.22 E-value=0.00026 Score=53.99 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=40.0
Q ss_pred CCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 21 LSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 21 ~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
.+-|.|....=.+..+- .++|++++|+|++|-||||.++++.+.+.+.-|...
T Consensus 79 e~vHRYg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~ 132 (591)
T COG1245 79 EVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE 132 (591)
T ss_pred cceeeccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC
Confidence 34677765432333343 467999999999999999999999999988766543
No 464
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.22 E-value=0.00039 Score=47.60 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=24.2
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....++.++|+|++|+||||+++.+.+..
T Consensus 25 ~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 25 TRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred eeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567999999999999999999876543
No 465
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.22 E-value=0.00035 Score=51.28 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=26.4
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+.....++|+|++||||||+++.++.++..
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 456788999999999999999999988864
No 466
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.00043 Score=52.30 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..+++++++|++|+||||++..+++..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999888764
No 467
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.20 E-value=0.00023 Score=55.10 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=39.7
Q ss_pred HHHhhcCCCCCCCCeeeeehh--hhhhhch--hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 10 VKKYEGQILGTLSPHLFAIGS--AAYSALA--TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 10 ~~~y~~~~~~~~~phiy~~~~--~~~~~l~--~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+++|+.....++.-|--.+.+ .++..+. ....++++|+||+||||||+++.++..+..
T Consensus 10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred chhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 566777776666655544432 2333322 233678999999999999999999988754
No 468
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.20 E-value=0.00055 Score=45.75 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+..++|+||+|+||+++.+.++..+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 46899999999999999999888654
No 469
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.19 E-value=0.00037 Score=49.51 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.1
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~ 62 (114)
...++.++|+|.|||||||+++.++
T Consensus 18 ip~g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 18 IPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred ccCCcEEEEECCCCCchHHHHHHHH
Confidence 5679999999999999999998653
No 470
>PRK14530 adenylate kinase; Provisional
Probab=97.19 E-value=0.0005 Score=47.13 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+..|+|+|++||||||+++.++..+..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999877643
No 471
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.19 E-value=0.00018 Score=48.38 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~ 62 (114)
+++|+|++|+||||+++.+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 36899999999999999887
No 472
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.18 E-value=0.00017 Score=49.63 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
..++|+|++|+||||+++.+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999873
No 473
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.17 E-value=0.00047 Score=42.35 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 44 VVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 44 i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
|+|+|..|+|||++++.+++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999988876544
No 474
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0006 Score=50.80 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=26.0
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
...+.+++++||+|+||||++..++..+...
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3458899999999999999999998876543
No 475
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.17 E-value=0.00047 Score=48.70 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=27.0
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..+..++++|++||||||+++.++..+...
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ccceEEEEECCCccccchHHHHHhhhcccc
Confidence 457899999999999999999999988766
No 476
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.17 E-value=0.00036 Score=47.35 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=27.7
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
++..++++=++||+||||||++-.+.+++...
T Consensus 21 qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s 52 (248)
T COG4138 21 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGS 52 (248)
T ss_pred ccccceEEEEECCCCccHHHHHHHHhCCCCCC
Confidence 46679999999999999999999999987543
No 477
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.16 E-value=0.00051 Score=48.21 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...++|.|++|+||||+++.+...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 55899999999999999999988765
No 478
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.16 E-value=0.0005 Score=43.99 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
+++|.|++|+|||+++..++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 36899999999999999998888653
No 479
>KOG0059|consensus
Probab=97.16 E-value=0.00023 Score=58.17 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=35.3
Q ss_pred hhhhc--hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 32 AYSAL--ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 32 ~~~~l--~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+ .+.+++|.++.|++|+||||.++++.+...+.+|..
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a 622 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEA 622 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceE
Confidence 55554 478899999999999999999999999999887753
No 480
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.16 E-value=0.00045 Score=45.51 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=20.6
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..+..++|.|++|+|||++++.++..+...
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 447889999999999999999888877665
No 481
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.16 E-value=0.0004 Score=47.03 Aligned_cols=23 Identities=48% Similarity=0.613 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+|+|.|.+||||||+++.+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998876
No 482
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.16 E-value=0.00059 Score=45.55 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=26.0
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...+.+++++|++|+||||+++.+.+.+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999875
No 483
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.16 E-value=0.00051 Score=46.82 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
.++|+|++|+||||+++.+++.+...
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~ 28 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQK 28 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 57899999999999999999887643
No 484
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.16 E-value=0.00046 Score=43.92 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+|+|+|++||||||+++.+...+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999988765
No 485
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.14 E-value=0.00033 Score=44.84 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=21.8
Q ss_pred EEEEcCCCCchHHHHHHHH--HHhhhhCC
Q psy7658 44 VVISGESGSGKTECTKLVM--QYLAAVNK 70 (114)
Q Consensus 44 i~l~G~sGsGKst~~~~i~--~~~~~~~g 70 (114)
++++|++|+||||+++.+. +......+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~ 30 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSK 30 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecC
Confidence 6899999999999999998 55544433
No 486
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.14 E-value=0.00059 Score=49.36 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=25.9
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
......++|+|++||||||+++.+++++..
T Consensus 129 v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 129 VLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 345678999999999999999999998764
No 487
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.14 E-value=7.5e-05 Score=51.25 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=31.2
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
.+..++.-+|+||+|+||||++..|.+.-.+..|+.
T Consensus 27 ~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v 62 (249)
T COG4674 27 SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEV 62 (249)
T ss_pred EecCCeEEEEECCCCCCceeeeeeecccCCCCcceE
Confidence 367899999999999999999999999888776643
No 488
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.14 E-value=0.00041 Score=47.39 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCchHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~ 62 (114)
.+++|+|+||+||||+++.+.
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 399999999999999999885
No 489
>PRK03839 putative kinase; Provisional
Probab=97.13 E-value=0.00058 Score=45.39 Aligned_cols=23 Identities=39% Similarity=0.723 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.|+|+|++||||||+.+.+...+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 490
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.00053 Score=46.08 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++|+|++||||||.++.+...+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 491
>KOG0054|consensus
Probab=97.13 E-value=0.00044 Score=58.58 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=33.1
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
.++++|.|+|+|.+||||||++..+.++..+..|+..
T Consensus 1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ 1198 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEIL 1198 (1381)
T ss_pred EEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEE
Confidence 3678999999999999999999999999998877653
No 492
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.13 E-value=0.00061 Score=45.30 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
...+.+|.|++|+||||++..+.-.+..
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4578999999999999999988777644
No 493
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.12 E-value=0.0004 Score=45.13 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
..+.++|++||||||+++.+.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~ 27 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR 27 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC
Confidence 35789999999999999988875543
No 494
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.12 E-value=0.00077 Score=43.56 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
++.|+|++++||||+++.++..+...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 58899999999999999999988643
No 495
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.11 E-value=0.00075 Score=42.79 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=25.4
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
.+.+.+|++.|+-|+||||+.|.+++.+...
T Consensus 12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4678999999999999999999999888443
No 496
>KOG0061|consensus
Probab=97.11 E-value=0.00041 Score=54.69 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=27.5
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.+++++.+|+|++||||||+++++++....
T Consensus 53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~ 82 (613)
T KOG0061|consen 53 AKPGELLAIMGPSGSGKTTLLNALAGRLNG 82 (613)
T ss_pred EecCeEEEEECCCCCCHHHHHHHHhccccC
Confidence 467999999999999999999999998864
No 497
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.10 E-value=0.00056 Score=44.46 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+++++|.+|+||||+++.+.+.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999875
No 498
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.08 E-value=0.00065 Score=43.17 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHh
Q psy7658 44 VVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 44 i~l~G~sGsGKst~~~~i~~~~ 65 (114)
++|.|++|+|||++++.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999887
No 499
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.08 E-value=0.00053 Score=42.24 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q psy7658 44 VVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 44 i~l~G~sGsGKst~~~~i~~~ 64 (114)
|++.|.+|+||||+++.+++.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999863
No 500
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.08 E-value=0.00058 Score=49.04 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
.++.++++|++|+||||+++.+++......|
T Consensus 160 ~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g 190 (287)
T cd01854 160 KGKTSVLVGQSGVGKSTLINALLPDLDLATG 190 (287)
T ss_pred ccceEEEECCCCCCHHHHHHHHhchhhcccc
Confidence 3689999999999999999999988765544
Done!