Query psy7658
Match_columns 114
No_of_seqs 153 out of 1277
Neff 8.9
Searched_HMMs 29240
Date Sat Aug 17 00:05:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 1.5E-37 5.3E-42 240.7 10.2 114 1-114 53-170 (697)
2 4db1_A Myosin-7; S1DC, cardiac 100.0 9.8E-38 3.3E-42 243.9 8.7 114 1-114 130-254 (783)
3 1w7j_A Myosin VA; motor protei 100.0 1.2E-37 4.1E-42 243.9 8.9 114 1-114 115-230 (795)
4 1w9i_A Myosin II heavy chain; 100.0 1.2E-37 4.2E-42 242.8 8.5 114 1-114 131-249 (770)
5 1kk8_A Myosin heavy chain, str 100.0 1.4E-37 4.8E-42 244.6 8.6 114 1-114 128-253 (837)
6 2v26_A Myosin VI; calmodulin-b 100.0 2.7E-37 9.2E-42 241.8 8.3 113 1-114 98-212 (784)
7 4anj_A Unconventional myosin-V 100.0 3.5E-37 1.2E-41 246.3 7.8 113 1-114 102-216 (1052)
8 1g8x_A Myosin II heavy chain f 100.0 7.4E-37 2.5E-41 244.3 9.5 114 1-114 131-249 (1010)
9 2ycu_A Non muscle myosin 2C, a 100.0 4.5E-37 1.5E-41 245.5 6.3 114 1-114 105-227 (995)
10 2dfs_A Myosin-5A; myosin-V, in 100.0 8.2E-37 2.8E-41 245.5 7.1 114 1-114 115-230 (1080)
11 1i84_S Smooth muscle myosin he 100.0 1.3E-36 4.4E-41 246.5 6.7 113 1-113 128-256 (1184)
12 1htw_A HI0065; nucleotide-bind 98.6 2.4E-08 8.2E-13 64.8 4.3 36 36-72 28-63 (158)
13 3tif_A Uncharacterized ABC tra 98.6 6.3E-09 2.2E-13 71.4 1.5 37 36-72 26-62 (235)
14 4g1u_C Hemin import ATP-bindin 98.6 1.3E-08 4.5E-13 71.1 2.1 37 36-72 32-68 (266)
15 2pcj_A ABC transporter, lipopr 98.6 9.4E-09 3.2E-13 70.1 1.3 37 36-72 25-61 (224)
16 1mv5_A LMRA, multidrug resista 98.6 1.6E-08 5.5E-13 69.7 2.2 37 36-72 23-59 (243)
17 1g6h_A High-affinity branched- 98.6 1.3E-08 4.4E-13 70.7 1.5 37 36-72 28-64 (257)
18 1b0u_A Histidine permease; ABC 98.6 1.3E-08 4.4E-13 71.0 1.5 37 36-72 27-63 (262)
19 3gfo_A Cobalt import ATP-bindi 98.6 1.3E-08 4.3E-13 71.6 1.4 37 36-72 29-65 (275)
20 2olj_A Amino acid ABC transpor 98.6 1.5E-08 5.1E-13 70.8 1.5 37 36-72 45-81 (263)
21 1ji0_A ABC transporter; ATP bi 98.6 1.5E-08 5.1E-13 69.7 1.4 37 36-72 27-63 (240)
22 2ff7_A Alpha-hemolysin translo 98.6 1.5E-08 5.3E-13 70.0 1.4 37 36-72 30-66 (247)
23 2cbz_A Multidrug resistance-as 98.5 1.5E-08 5.2E-13 69.6 1.3 36 36-71 26-61 (237)
24 1sgw_A Putative ABC transporte 98.5 1.5E-08 5E-13 68.9 1.1 37 36-72 30-66 (214)
25 3fvq_A Fe(3+) IONS import ATP- 98.5 2.1E-08 7.2E-13 72.9 2.0 37 36-72 25-61 (359)
26 1vpl_A ABC transporter, ATP-bi 98.5 1.8E-08 6.2E-13 70.1 1.5 37 36-72 36-72 (256)
27 2pze_A Cystic fibrosis transme 98.5 1.8E-08 6.1E-13 68.9 1.4 36 36-71 29-64 (229)
28 2ihy_A ABC transporter, ATP-bi 98.5 2E-08 6.7E-13 70.7 1.4 36 36-71 42-77 (279)
29 2ixe_A Antigen peptide transpo 98.5 2.1E-08 7.2E-13 70.2 1.5 37 36-72 40-76 (271)
30 3rlf_A Maltose/maltodextrin im 98.5 2.8E-08 9.5E-13 72.8 2.0 37 36-72 24-60 (381)
31 2yz2_A Putative ABC transporte 98.5 2.4E-08 8.1E-13 69.7 1.5 37 36-72 28-64 (266)
32 2nq2_C Hypothetical ABC transp 98.5 2.6E-08 8.9E-13 69.1 1.4 36 36-71 26-61 (253)
33 2yyz_A Sugar ABC transporter, 98.5 3.5E-08 1.2E-12 71.7 2.1 37 36-72 24-60 (359)
34 1z47_A CYSA, putative ABC-tran 98.5 3.5E-08 1.2E-12 71.6 2.0 36 36-71 36-71 (355)
35 2onk_A Molybdate/tungstate ABC 98.5 3.9E-08 1.3E-12 67.8 1.9 35 36-71 20-54 (240)
36 3tui_C Methionine import ATP-b 98.5 4.1E-08 1.4E-12 71.6 2.0 37 36-72 49-85 (366)
37 2it1_A 362AA long hypothetical 98.5 4.1E-08 1.4E-12 71.4 2.0 36 36-71 24-59 (362)
38 1g29_1 MALK, maltose transport 98.5 4.2E-08 1.4E-12 71.6 2.0 36 36-71 24-59 (372)
39 1v43_A Sugar-binding transport 98.5 4.4E-08 1.5E-12 71.5 2.0 37 36-72 32-68 (372)
40 2qi9_C Vitamin B12 import ATP- 98.5 3.8E-08 1.3E-12 68.2 1.5 36 36-72 21-56 (249)
41 2d2e_A SUFC protein; ABC-ATPas 98.5 4.1E-08 1.4E-12 67.9 1.7 36 36-71 24-61 (250)
42 3d31_A Sulfate/molybdate ABC t 98.5 3.4E-08 1.2E-12 71.5 1.2 37 36-72 21-57 (348)
43 3b85_A Phosphate starvation-in 98.5 1.4E-07 4.8E-12 63.7 4.1 49 21-73 5-53 (208)
44 2bbs_A Cystic fibrosis transme 98.4 4.4E-08 1.5E-12 69.3 1.3 36 36-71 59-94 (290)
45 1oxx_K GLCV, glucose, ABC tran 98.4 3.3E-08 1.1E-12 71.7 0.5 36 36-71 26-61 (353)
46 1znw_A Guanylate kinase, GMP k 98.4 1.7E-07 5.7E-12 62.7 3.9 31 36-66 15-45 (207)
47 3nh6_A ATP-binding cassette SU 98.4 3.7E-08 1.3E-12 70.2 0.7 37 36-72 75-111 (306)
48 2eyu_A Twitching motility prot 98.4 3E-07 1E-11 64.0 5.0 41 32-72 16-57 (261)
49 1z6g_A Guanylate kinase; struc 98.4 1.6E-07 5.6E-12 63.4 3.6 30 36-65 18-47 (218)
50 2zu0_C Probable ATP-dependent 98.4 7.3E-08 2.5E-12 67.3 1.7 36 36-71 41-78 (267)
51 2ghi_A Transport protein; mult 98.4 7.3E-08 2.5E-12 67.0 1.5 35 36-71 41-75 (260)
52 4gp7_A Metallophosphoesterase; 98.4 2.3E-07 7.9E-12 60.4 3.7 36 36-71 4-51 (171)
53 3tr0_A Guanylate kinase, GMP k 98.4 2.8E-07 9.5E-12 60.9 3.9 29 38-66 4-32 (205)
54 2pjz_A Hypothetical protein ST 98.4 9.2E-08 3.2E-12 66.7 1.5 35 36-72 26-60 (263)
55 3ec2_A DNA replication protein 98.3 3.7E-07 1.3E-11 59.5 3.7 37 35-71 32-68 (180)
56 3gd7_A Fusion complex of cysti 98.3 1.5E-07 5.2E-12 69.0 1.9 35 36-71 42-76 (390)
57 3ozx_A RNAse L inhibitor; ATP 98.3 1.7E-07 5.8E-12 71.3 1.9 49 22-72 5-56 (538)
58 3b9q_A Chloroplast SRP recepto 98.3 6.1E-07 2.1E-11 63.7 4.5 36 37-72 96-131 (302)
59 2v9p_A Replication protein E1; 98.3 5.9E-07 2E-11 64.0 4.0 30 36-65 121-150 (305)
60 3c8u_A Fructokinase; YP_612366 98.3 6.5E-07 2.2E-11 59.8 3.9 30 39-68 20-49 (208)
61 3b5x_A Lipid A export ATP-bind 98.3 3.5E-07 1.2E-11 70.0 2.8 37 36-72 364-400 (582)
62 2npi_A Protein CLP1; CLP1-PCF1 98.3 5E-07 1.7E-11 67.6 3.5 36 36-71 133-169 (460)
63 3asz_A Uridine kinase; cytidin 98.3 7.5E-07 2.6E-11 59.2 4.0 29 38-66 3-31 (211)
64 3a00_A Guanylate kinase, GMP k 98.2 6.5E-07 2.2E-11 58.8 3.5 26 41-66 1-26 (186)
65 3aez_A Pantothenate kinase; tr 98.2 8.8E-07 3E-11 63.1 4.4 33 38-70 87-119 (312)
66 1s96_A Guanylate kinase, GMP k 98.2 7.7E-07 2.6E-11 60.4 3.8 30 38-67 13-42 (219)
67 1yqt_A RNAse L inhibitor; ATP- 98.2 5.4E-07 1.9E-11 68.5 3.2 35 38-72 44-78 (538)
68 3lnc_A Guanylate kinase, GMP k 98.2 4.3E-07 1.5E-11 61.5 2.3 30 36-65 22-52 (231)
69 3j16_B RLI1P; ribosome recycli 98.2 4.7E-07 1.6E-11 69.8 2.7 35 38-72 100-134 (608)
70 1yqt_A RNAse L inhibitor; ATP- 98.2 5.6E-07 1.9E-11 68.4 3.0 35 38-72 309-343 (538)
71 3ozx_A RNAse L inhibitor; ATP 98.2 4.4E-07 1.5E-11 69.0 2.4 35 38-72 291-325 (538)
72 1lvg_A Guanylate kinase, GMP k 98.2 8.1E-07 2.8E-11 59.1 3.4 27 40-66 3-29 (198)
73 2j41_A Guanylate kinase; GMP, 98.2 8.8E-07 3E-11 58.5 3.5 32 36-67 1-32 (207)
74 3bk7_A ABC transporter ATP-bin 98.2 5.8E-07 2E-11 69.3 3.0 35 38-72 379-413 (607)
75 2gza_A Type IV secretion syste 98.2 5.9E-07 2E-11 65.1 2.8 37 35-71 169-205 (361)
76 2og2_A Putative signal recogni 98.2 1.1E-06 3.8E-11 63.9 4.3 36 37-72 153-188 (359)
77 2jeo_A Uridine-cytidine kinase 98.2 1E-06 3.5E-11 60.2 3.9 30 36-65 20-49 (245)
78 1kgd_A CASK, peripheral plasma 98.2 1.2E-06 4.1E-11 57.3 3.8 27 40-66 4-30 (180)
79 3b60_A Lipid A export ATP-bind 98.2 4E-07 1.4E-11 69.6 1.7 37 36-72 364-400 (582)
80 3euj_A Chromosome partition pr 98.2 1.1E-06 3.7E-11 66.2 3.9 36 36-72 25-60 (483)
81 2i3b_A HCR-ntpase, human cance 98.2 1.3E-06 4.4E-11 58.1 3.9 29 41-70 1-29 (189)
82 1rj9_A FTSY, signal recognitio 98.2 1.8E-06 6.3E-11 61.3 4.7 33 40-72 101-133 (304)
83 2yl4_A ATP-binding cassette SU 98.2 3.9E-07 1.3E-11 69.9 1.0 37 36-72 365-401 (595)
84 2yhs_A FTSY, cell division pro 98.1 1.6E-06 5.6E-11 65.4 4.2 35 38-72 290-324 (503)
85 1zp6_A Hypothetical protein AT 98.1 1.3E-06 4.5E-11 57.1 3.2 27 38-64 6-32 (191)
86 3uie_A Adenylyl-sulfate kinase 98.1 2.5E-06 8.5E-11 56.6 4.6 31 36-66 20-50 (200)
87 2pt7_A CAG-ALFA; ATPase, prote 98.1 6.6E-07 2.2E-11 64.2 1.8 36 36-71 166-201 (330)
88 3qf4_B Uncharacterized ABC tra 98.1 5E-07 1.7E-11 69.3 1.2 37 36-72 376-412 (598)
89 3jvv_A Twitching mobility prot 98.1 2.5E-06 8.7E-11 61.8 4.8 38 32-69 114-151 (356)
90 3e70_C DPA, signal recognition 98.1 2.2E-06 7.6E-11 61.5 4.3 34 39-72 127-160 (328)
91 3bk7_A ABC transporter ATP-bin 98.1 1E-06 3.5E-11 67.9 2.7 35 38-72 114-148 (607)
92 4a82_A Cystic fibrosis transme 98.1 2.8E-07 9.7E-12 70.4 -0.4 37 36-72 362-398 (578)
93 4eun_A Thermoresistant glucoki 98.1 2.3E-06 7.9E-11 56.7 4.0 29 37-65 25-53 (200)
94 2ewv_A Twitching motility prot 98.1 2.7E-06 9.3E-11 61.9 4.6 38 34-71 129-167 (372)
95 4a74_A DNA repair and recombin 98.1 1.8E-06 6.1E-11 57.7 3.3 30 38-67 22-51 (231)
96 1sq5_A Pantothenate kinase; P- 98.1 2.7E-06 9.2E-11 60.3 4.3 34 39-72 78-113 (308)
97 2ehv_A Hypothetical protein PH 98.1 3.1E-06 1.1E-10 57.2 4.3 27 38-64 27-53 (251)
98 1ye8_A Protein THEP1, hypothet 98.1 2.7E-06 9.1E-11 55.9 3.8 24 43-66 2-25 (178)
99 3sop_A Neuronal-specific septi 98.1 2.1E-06 7.1E-11 60.0 3.4 29 43-71 4-32 (270)
100 1p9r_A General secretion pathw 98.1 3.1E-06 1.1E-10 62.6 4.5 39 33-71 159-197 (418)
101 3qf4_A ABC transporter, ATP-bi 98.1 5.9E-07 2E-11 68.9 0.4 37 36-72 364-400 (587)
102 2qm8_A GTPase/ATPase; G protei 98.0 4.9E-06 1.7E-10 59.8 4.9 36 37-72 51-86 (337)
103 3tau_A Guanylate kinase, GMP k 98.0 3.7E-06 1.3E-10 56.2 3.6 29 39-67 6-34 (208)
104 3ney_A 55 kDa erythrocyte memb 98.0 4.5E-06 1.5E-10 55.9 3.9 32 35-66 13-44 (197)
105 1lw7_A Transcriptional regulat 98.0 3.2E-06 1.1E-10 61.0 3.4 32 38-69 165-198 (365)
106 3j16_B RLI1P; ribosome recycli 98.0 3.1E-06 1.1E-10 65.3 3.2 31 41-71 378-408 (608)
107 1tq4_A IIGP1, interferon-induc 98.0 2.6E-06 8.9E-11 63.0 2.6 30 43-72 71-100 (413)
108 2oap_1 GSPE-2, type II secreti 98.0 3.4E-06 1.2E-10 63.8 3.0 34 37-70 256-289 (511)
109 2obl_A ESCN; ATPase, hydrolase 98.0 3.8E-06 1.3E-10 60.7 2.8 46 25-70 54-100 (347)
110 1rz3_A Hypothetical protein rb 98.0 8.9E-06 3.1E-10 54.0 4.5 34 38-71 19-52 (201)
111 2dpy_A FLII, flagellum-specifi 98.0 4.1E-06 1.4E-10 62.3 3.0 41 30-70 145-186 (438)
112 3vaa_A Shikimate kinase, SK; s 97.9 8.1E-06 2.8E-10 54.0 4.0 30 36-65 20-49 (199)
113 2iw3_A Elongation factor 3A; a 97.9 1.4E-06 4.7E-11 70.3 0.2 37 36-72 694-730 (986)
114 1kag_A SKI, shikimate kinase I 97.9 7.7E-06 2.6E-10 52.5 3.5 26 41-66 4-29 (173)
115 1knq_A Gluconate kinase; ALFA/ 97.9 1E-05 3.4E-10 52.2 3.9 27 39-65 6-32 (175)
116 1cr0_A DNA primase/helicase; R 97.9 1.2E-05 4E-10 56.3 4.5 35 36-70 30-64 (296)
117 2bdt_A BH3686; alpha-beta prot 97.9 6.9E-06 2.4E-10 53.7 3.1 24 41-64 2-25 (189)
118 3cr8_A Sulfate adenylyltranfer 97.9 9.5E-06 3.2E-10 62.0 4.1 34 37-70 365-398 (552)
119 2w0m_A SSO2452; RECA, SSPF, un 97.9 1.4E-05 4.9E-10 53.1 4.5 34 38-71 20-53 (235)
120 4f4c_A Multidrug resistance pr 97.9 3E-06 1E-10 70.2 1.2 37 36-72 1100-1136(1321)
121 1u0l_A Probable GTPase ENGC; p 97.9 4.9E-06 1.7E-10 58.8 2.1 35 38-72 166-200 (301)
122 2f1r_A Molybdopterin-guanine d 97.9 5E-06 1.7E-10 54.4 1.8 27 42-68 3-29 (171)
123 3g5u_A MCG1178, multidrug resi 97.8 3.7E-06 1.3E-10 69.5 0.9 37 36-72 411-447 (1284)
124 2bbw_A Adenylate kinase 4, AK4 97.8 4.9E-06 1.7E-10 56.8 1.4 24 40-63 26-49 (246)
125 2kjq_A DNAA-related protein; s 97.8 1.5E-05 5.2E-10 50.8 3.5 36 32-67 27-62 (149)
126 3g5u_A MCG1178, multidrug resi 97.8 5.2E-06 1.8E-10 68.6 1.6 37 36-72 1054-1090(1284)
127 2qag_B Septin-6, protein NEDD5 97.8 9.3E-06 3.2E-10 60.3 2.7 30 36-65 35-66 (427)
128 4e22_A Cytidylate kinase; P-lo 97.8 5.9E-06 2E-10 56.9 1.6 25 39-63 25-49 (252)
129 2yv5_A YJEQ protein; hydrolase 97.8 1.4E-05 4.7E-10 56.6 3.5 35 38-73 162-196 (302)
130 3kta_A Chromosome segregation 97.8 2E-05 7E-10 51.0 3.9 28 42-69 27-54 (182)
131 4f4c_A Multidrug resistance pr 97.8 6.2E-06 2.1E-10 68.4 1.4 37 36-72 439-475 (1321)
132 2rcn_A Probable GTPase ENGC; Y 97.7 1.4E-05 4.8E-10 58.1 2.8 33 39-71 213-246 (358)
133 1t9h_A YLOQ, probable GTPase E 97.7 5.3E-06 1.8E-10 59.1 0.6 34 38-71 170-203 (307)
134 2qor_A Guanylate kinase; phosp 97.7 2.1E-05 7.3E-10 52.1 3.5 28 39-66 10-37 (204)
135 1tf7_A KAIC; homohexamer, hexa 97.7 2.7E-05 9.2E-10 58.8 4.3 40 31-70 26-70 (525)
136 1cke_A CK, MSSA, protein (cyti 97.7 3.1E-05 1E-09 51.8 3.9 25 41-65 5-29 (227)
137 2iw3_A Elongation factor 3A; a 97.7 2.2E-05 7.7E-10 63.4 3.5 28 36-63 456-483 (986)
138 3ux8_A Excinuclease ABC, A sub 97.7 1.8E-05 6E-10 61.5 2.7 27 32-58 33-61 (670)
139 2vp4_A Deoxynucleoside kinase; 97.7 1.6E-05 5.5E-10 53.8 2.1 27 38-64 17-43 (230)
140 2qt1_A Nicotinamide riboside k 97.7 2.7E-05 9.4E-10 51.5 3.0 28 38-65 18-45 (207)
141 1odf_A YGR205W, hypothetical 3 97.6 4.3E-05 1.5E-09 53.9 4.1 30 39-68 29-58 (290)
142 1qhl_A Protein (cell division 97.6 3.2E-06 1.1E-10 57.8 -1.6 31 42-72 28-58 (227)
143 2pez_A Bifunctional 3'-phospho 97.6 4.3E-05 1.5E-09 49.5 3.8 28 40-67 4-31 (179)
144 3nwj_A ATSK2; P loop, shikimat 97.6 2.8E-05 9.7E-10 53.7 3.0 35 31-65 33-72 (250)
145 1qhx_A CPT, protein (chloramph 97.6 4.4E-05 1.5E-09 49.1 3.8 25 41-65 3-27 (178)
146 3tqc_A Pantothenate kinase; bi 97.6 3.9E-05 1.3E-09 55.0 3.7 25 43-67 94-118 (321)
147 1vma_A Cell division protein F 97.6 6E-05 2E-09 53.6 4.5 34 39-72 102-135 (306)
148 3kb2_A SPBC2 prophage-derived 97.6 5.4E-05 1.8E-09 48.2 3.7 24 43-66 3-26 (173)
149 1pui_A ENGB, probable GTP-bind 97.6 1.2E-05 4E-10 53.0 0.5 34 32-65 17-50 (210)
150 1svm_A Large T antigen; AAA+ f 97.6 4.3E-05 1.5E-09 55.8 3.6 28 38-65 166-193 (377)
151 3ux8_A Excinuclease ABC, A sub 97.6 2E-05 6.8E-10 61.2 1.8 27 36-62 343-369 (670)
152 1nij_A Hypothetical protein YJ 97.6 3.3E-05 1.1E-09 54.9 2.7 24 42-65 5-28 (318)
153 2px0_A Flagellar biosynthesis 97.5 8.3E-05 2.8E-09 52.5 4.5 31 40-70 104-134 (296)
154 3t61_A Gluconokinase; PSI-biol 97.5 5.5E-05 1.9E-09 49.9 3.4 25 41-65 18-42 (202)
155 2yvu_A Probable adenylyl-sulfa 97.5 0.0001 3.5E-09 48.0 4.5 30 39-68 11-40 (186)
156 2x8a_A Nuclear valosin-contain 97.5 9E-05 3.1E-09 51.6 4.5 26 42-67 45-70 (274)
157 1ex7_A Guanylate kinase; subst 97.5 6E-05 2.1E-09 50.0 3.3 24 42-65 2-25 (186)
158 1m7g_A Adenylylsulfate kinase; 97.5 8.8E-05 3E-09 49.3 4.0 30 37-66 21-50 (211)
159 1y63_A LMAJ004144AAA protein; 97.5 9.5E-05 3.3E-09 48.2 4.0 29 36-64 5-33 (184)
160 1n0w_A DNA repair protein RAD5 97.5 8.6E-05 2.9E-09 49.8 3.7 27 38-64 21-47 (243)
161 1kht_A Adenylate kinase; phosp 97.5 0.0001 3.5E-09 47.7 3.9 26 41-66 3-28 (192)
162 1zu4_A FTSY; GTPase, signal re 97.5 0.00012 4.2E-09 52.2 4.6 34 38-71 102-135 (320)
163 3cm0_A Adenylate kinase; ATP-b 97.5 8.5E-05 2.9E-09 48.1 3.5 26 40-65 3-28 (186)
164 1ixz_A ATP-dependent metallopr 97.5 0.00013 4.4E-09 49.7 4.5 25 42-66 50-74 (254)
165 2cvh_A DNA repair and recombin 97.5 0.00011 3.8E-09 48.6 3.9 26 38-63 17-42 (220)
166 1jjv_A Dephospho-COA kinase; P 97.4 8E-05 2.7E-09 49.2 3.2 21 43-63 4-24 (206)
167 2if2_A Dephospho-COA kinase; a 97.4 0.0001 3.5E-09 48.5 3.4 21 43-63 3-23 (204)
168 1nlf_A Regulatory protein REPA 97.4 0.00013 4.3E-09 50.6 3.9 29 38-66 27-55 (279)
169 2rhm_A Putative kinase; P-loop 97.4 0.00013 4.6E-09 47.3 3.8 26 40-65 4-29 (193)
170 4aby_A DNA repair protein RECN 97.4 3.2E-05 1.1E-09 56.3 0.9 28 38-66 58-85 (415)
171 1in4_A RUVB, holliday junction 97.4 9E-05 3.1E-09 52.8 3.2 24 42-65 52-75 (334)
172 1zuh_A Shikimate kinase; alpha 97.4 0.00014 4.8E-09 46.5 3.8 24 42-65 8-31 (168)
173 1np6_A Molybdopterin-guanine d 97.4 0.00017 5.7E-09 47.3 4.1 27 42-68 7-33 (174)
174 3trf_A Shikimate kinase, SK; a 97.4 0.00015 5.2E-09 46.9 3.9 25 41-65 5-29 (185)
175 3iij_A Coilin-interacting nucl 97.4 0.00015 5.2E-09 46.8 3.9 27 39-65 9-35 (180)
176 1iy2_A ATP-dependent metallopr 97.4 0.00019 6.5E-09 49.6 4.5 25 42-66 74-98 (278)
177 3szr_A Interferon-induced GTP- 97.4 4.6E-05 1.6E-09 58.7 1.4 29 43-71 47-76 (608)
178 2jaq_A Deoxyguanosine kinase; 97.4 0.00016 5.4E-09 47.3 3.8 24 43-66 2-25 (205)
179 3lw7_A Adenylate kinase relate 97.3 0.00013 4.4E-09 46.2 3.1 20 42-61 2-21 (179)
180 1nn5_A Similar to deoxythymidy 97.3 0.00019 6.6E-09 47.3 4.0 28 39-66 7-34 (215)
181 1ewq_A DNA mismatch repair pro 97.3 0.00019 6.5E-09 56.7 4.5 30 41-70 576-606 (765)
182 1pzn_A RAD51, DNA repair and r 97.3 0.00017 5.7E-09 52.0 3.9 28 38-65 128-155 (349)
183 2c95_A Adenylate kinase 1; tra 97.3 0.00021 7.3E-09 46.4 4.0 26 40-65 8-33 (196)
184 2wwf_A Thymidilate kinase, put 97.3 0.00022 7.5E-09 47.0 4.1 27 40-66 9-35 (212)
185 1nks_A Adenylate kinase; therm 97.3 0.00018 6.3E-09 46.5 3.6 24 43-66 3-26 (194)
186 1wb9_A DNA mismatch repair pro 97.3 0.00017 5.7E-09 57.3 3.9 27 39-65 605-631 (800)
187 1qf9_A UMP/CMP kinase, protein 97.3 0.00022 7.7E-09 46.0 3.8 25 41-65 6-30 (194)
188 1gvn_B Zeta; postsegregational 97.3 0.0002 6.8E-09 50.2 3.7 26 40-65 32-57 (287)
189 2ze6_A Isopentenyl transferase 97.3 0.00019 6.6E-09 49.3 3.6 23 43-65 3-25 (253)
190 1ls1_A Signal recognition part 97.3 0.00028 9.6E-09 49.7 4.5 32 40-71 97-128 (295)
191 2plr_A DTMP kinase, probable t 97.3 0.00023 7.8E-09 46.7 3.8 27 41-67 4-30 (213)
192 1ly1_A Polynucleotide kinase; 97.3 0.0002 6.8E-09 45.8 3.5 22 42-63 3-24 (181)
193 1oix_A RAS-related protein RAB 97.3 0.00019 6.6E-09 46.8 3.4 24 43-66 31-54 (191)
194 1gtv_A TMK, thymidylate kinase 97.3 9.3E-05 3.2E-09 48.9 1.8 25 43-67 2-26 (214)
195 2v54_A DTMP kinase, thymidylat 97.3 0.00021 7.3E-09 46.8 3.6 26 40-65 3-28 (204)
196 1via_A Shikimate kinase; struc 97.3 0.0002 6.8E-09 46.1 3.3 23 43-65 6-28 (175)
197 3thx_B DNA mismatch repair pro 97.3 0.00014 4.8E-09 58.5 3.1 27 38-64 670-696 (918)
198 2www_A Methylmalonic aciduria 97.3 0.0003 1E-08 50.6 4.6 30 41-70 74-103 (349)
199 1lv7_A FTSH; alpha/beta domain 97.2 0.0003 1E-08 47.9 4.2 26 41-66 45-70 (257)
200 2bwj_A Adenylate kinase 5; pho 97.2 0.00028 9.5E-09 46.0 3.8 26 40-65 11-36 (199)
201 2f9l_A RAB11B, member RAS onco 97.2 0.00024 8.3E-09 46.4 3.5 23 43-65 7-29 (199)
202 1tev_A UMP-CMP kinase; ploop, 97.2 0.00028 9.6E-09 45.6 3.7 25 41-65 3-27 (196)
203 3cf0_A Transitional endoplasmi 97.2 0.00033 1.1E-08 49.1 4.3 28 38-65 46-73 (301)
204 2z0h_A DTMP kinase, thymidylat 97.2 0.0003 1E-08 45.7 3.7 23 43-65 2-24 (197)
205 1jbk_A CLPB protein; beta barr 97.2 0.00045 1.6E-08 44.0 4.5 29 39-67 41-69 (195)
206 1tf7_A KAIC; homohexamer, hexa 97.2 0.00032 1.1E-08 53.0 4.2 31 38-68 278-308 (525)
207 2p5t_B PEZT; postsegregational 97.2 0.00021 7.2E-09 49.0 2.9 28 39-66 30-57 (253)
208 1sxj_C Activator 1 40 kDa subu 97.2 0.0004 1.4E-08 49.3 4.4 30 38-67 41-72 (340)
209 4eaq_A DTMP kinase, thymidylat 97.2 0.00034 1.2E-08 47.5 3.9 29 39-67 24-52 (229)
210 1w1w_A Structural maintenance 97.2 0.00031 1E-08 51.7 3.9 32 38-69 23-54 (430)
211 2qnr_A Septin-2, protein NEDD5 97.2 0.00016 5.3E-09 51.1 2.2 28 43-70 20-48 (301)
212 2dr3_A UPF0273 protein PH0284; 97.2 0.00045 1.5E-08 46.3 4.4 30 38-67 20-49 (247)
213 1xjc_A MOBB protein homolog; s 97.2 0.00042 1.4E-08 45.2 4.0 27 42-68 5-31 (169)
214 1uf9_A TT1252 protein; P-loop, 97.2 0.00033 1.1E-08 45.7 3.6 24 41-64 8-31 (203)
215 1aky_A Adenylate kinase; ATP:A 97.2 0.0004 1.4E-08 46.3 4.0 26 40-65 3-28 (220)
216 3fb4_A Adenylate kinase; psych 97.2 0.00035 1.2E-08 46.3 3.7 23 43-65 2-24 (216)
217 1q3t_A Cytidylate kinase; nucl 97.1 0.00041 1.4E-08 46.9 4.1 27 39-65 14-40 (236)
218 2iyv_A Shikimate kinase, SK; t 97.1 0.00032 1.1E-08 45.3 3.4 24 42-65 3-26 (184)
219 2cdn_A Adenylate kinase; phosp 97.1 0.00044 1.5E-08 45.4 4.1 27 39-65 18-44 (201)
220 2p67_A LAO/AO transport system 97.1 0.00054 1.8E-08 49.0 4.8 33 38-70 53-85 (341)
221 1e6c_A Shikimate kinase; phosp 97.1 0.00035 1.2E-08 44.6 3.4 24 42-65 3-26 (173)
222 2vli_A Antibiotic resistance p 97.1 0.00027 9.3E-09 45.5 2.9 25 41-65 5-29 (183)
223 3ake_A Cytidylate kinase; CMP 97.1 0.0004 1.4E-08 45.5 3.7 23 43-65 4-26 (208)
224 2pbr_A DTMP kinase, thymidylat 97.1 0.00041 1.4E-08 44.9 3.7 23 43-65 2-24 (195)
225 3thx_A DNA mismatch repair pro 97.1 0.00034 1.1E-08 56.4 3.8 24 38-61 659-682 (934)
226 3r20_A Cytidylate kinase; stru 97.1 0.0004 1.4E-08 47.5 3.7 25 41-65 9-33 (233)
227 1vht_A Dephospho-COA kinase; s 97.1 0.00041 1.4E-08 46.1 3.7 23 41-63 4-26 (218)
228 1zak_A Adenylate kinase; ATP:A 97.1 0.00041 1.4E-08 46.3 3.7 26 41-66 5-30 (222)
229 3dl0_A Adenylate kinase; phosp 97.1 0.00041 1.4E-08 46.0 3.6 23 43-65 2-24 (216)
230 2o8b_B DNA mismatch repair pro 97.1 0.00037 1.3E-08 56.7 3.8 26 41-67 789-814 (1022)
231 2pt5_A Shikimate kinase, SK; a 97.1 0.00048 1.6E-08 43.8 3.7 23 43-65 2-24 (168)
232 1zd8_A GTP:AMP phosphotransfer 97.1 0.00044 1.5E-08 46.4 3.7 26 40-65 6-31 (227)
233 3qf7_A RAD50; ABC-ATPase, ATPa 97.1 0.00038 1.3E-08 50.4 3.4 28 38-66 21-48 (365)
234 1ukz_A Uridylate kinase; trans 97.1 0.00054 1.8E-08 44.9 3.8 26 40-65 14-39 (203)
235 2o5v_A DNA replication and rep 97.0 0.0004 1.4E-08 50.4 3.4 28 38-66 24-51 (359)
236 3bos_A Putative DNA replicatio 97.0 0.00063 2.2E-08 45.1 4.1 28 40-67 51-78 (242)
237 1ypw_A Transitional endoplasmi 97.0 0.00043 1.5E-08 54.9 3.8 29 38-66 235-263 (806)
238 2p65_A Hypothetical protein PF 97.0 0.00054 1.9E-08 43.6 3.7 29 39-67 41-69 (187)
239 2w58_A DNAI, primosome compone 97.0 0.00083 2.8E-08 44.0 4.5 27 42-68 55-81 (202)
240 3h4m_A Proteasome-activating n 97.0 0.0007 2.4E-08 46.6 4.3 28 39-66 49-76 (285)
241 3tlx_A Adenylate kinase 2; str 97.0 0.00061 2.1E-08 46.4 3.9 26 40-65 28-53 (243)
242 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00064 2.2E-08 43.1 3.7 25 41-65 23-47 (149)
243 2gj8_A MNME, tRNA modification 97.0 0.00046 1.6E-08 44.2 3.1 25 40-64 3-27 (172)
244 1uj2_A Uridine-cytidine kinase 97.0 0.00056 1.9E-08 46.7 3.7 26 41-66 22-47 (252)
245 3m6a_A ATP-dependent protease 97.0 0.0006 2.1E-08 51.8 4.0 29 40-68 107-135 (543)
246 2qag_C Septin-7; cell cycle, c 97.0 0.00027 9.3E-09 52.2 1.9 24 44-67 34-57 (418)
247 1sxj_E Activator 1 40 kDa subu 97.0 0.0005 1.7E-08 48.7 3.2 27 44-70 39-66 (354)
248 1a7j_A Phosphoribulokinase; tr 96.9 0.00039 1.3E-08 48.9 2.5 26 41-66 5-30 (290)
249 2grj_A Dephospho-COA kinase; T 96.9 0.0008 2.7E-08 44.6 3.7 25 41-65 12-36 (192)
250 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00083 2.8E-08 48.8 4.0 30 38-67 19-50 (359)
251 1e69_A Chromosome segregation 96.9 0.00051 1.7E-08 48.7 2.8 26 39-65 23-48 (322)
252 2wji_A Ferrous iron transport 96.9 0.00063 2.2E-08 43.1 3.0 23 42-64 4-26 (165)
253 3lda_A DNA repair protein RAD5 96.9 0.00068 2.3E-08 49.8 3.4 25 38-62 175-199 (400)
254 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00088 3E-08 46.0 3.8 26 41-66 4-29 (260)
255 2xb4_A Adenylate kinase; ATP-b 96.9 0.00086 2.9E-08 45.0 3.7 23 43-65 2-24 (223)
256 1e4v_A Adenylate kinase; trans 96.9 0.00085 2.9E-08 44.5 3.6 23 43-65 2-24 (214)
257 3umf_A Adenylate kinase; rossm 96.9 0.00097 3.3E-08 45.1 3.9 28 38-65 26-53 (217)
258 2vf7_A UVRA2, excinuclease ABC 96.9 0.00026 8.9E-09 56.5 1.2 30 37-66 519-549 (842)
259 3be4_A Adenylate kinase; malar 96.9 0.00095 3.2E-08 44.5 3.8 25 41-65 5-29 (217)
260 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0011 3.6E-08 45.0 4.0 27 39-65 37-63 (262)
261 3k1j_A LON protease, ATP-depen 96.9 0.0006 2E-08 52.3 3.0 31 38-68 57-87 (604)
262 3b9p_A CG5977-PA, isoform A; A 96.8 0.001 3.5E-08 46.1 4.0 27 40-66 53-79 (297)
263 2ygr_A Uvrabc system protein A 96.8 0.00036 1.2E-08 56.5 1.8 26 37-62 664-689 (993)
264 4fcw_A Chaperone protein CLPB; 96.8 0.00094 3.2E-08 46.4 3.6 27 41-67 47-73 (311)
265 1ni3_A YCHF GTPase, YCHF GTP-b 96.8 0.00096 3.3E-08 48.9 3.7 27 38-64 17-43 (392)
266 2zej_A Dardarin, leucine-rich 96.8 0.00055 1.9E-08 44.1 2.2 22 43-64 4-25 (184)
267 3hr8_A Protein RECA; alpha and 96.8 0.0013 4.3E-08 47.7 4.3 33 38-70 58-90 (356)
268 2ffh_A Protein (FFH); SRP54, s 96.8 0.0012 4.2E-08 48.9 4.2 32 40-71 97-128 (425)
269 1j8m_F SRP54, signal recogniti 96.8 0.0012 4.2E-08 46.5 4.0 31 41-71 98-128 (297)
270 3d3q_A TRNA delta(2)-isopenten 96.8 0.001 3.5E-08 48.0 3.7 25 42-66 8-32 (340)
271 1ak2_A Adenylate kinase isoenz 96.8 0.0014 4.7E-08 44.2 4.1 26 40-65 15-40 (233)
272 3sr0_A Adenylate kinase; phosp 96.8 0.0012 4E-08 44.2 3.7 23 43-65 2-24 (206)
273 2wjg_A FEOB, ferrous iron tran 96.8 0.00095 3.3E-08 42.8 3.2 23 42-64 8-30 (188)
274 2gks_A Bifunctional SAT/APS ki 96.7 0.0016 5.5E-08 49.6 4.7 48 19-66 345-397 (546)
275 2qby_A CDC6 homolog 1, cell di 96.7 0.0011 3.8E-08 46.9 3.6 29 40-68 44-72 (386)
276 3qks_A DNA double-strand break 96.7 0.0013 4.5E-08 43.7 3.7 27 41-67 23-49 (203)
277 1njg_A DNA polymerase III subu 96.7 0.0014 5E-08 43.0 3.9 26 42-67 46-71 (250)
278 3kl4_A SRP54, signal recogniti 96.7 0.0012 4.1E-08 49.0 3.8 32 40-71 96-127 (433)
279 1l8q_A Chromosomal replication 96.7 0.0012 4.1E-08 46.5 3.6 28 41-68 37-64 (324)
280 2f6r_A COA synthase, bifunctio 96.7 0.0013 4.3E-08 45.9 3.5 23 41-63 75-97 (281)
281 2r6f_A Excinuclease ABC subuni 96.7 0.00037 1.3E-08 56.3 0.8 26 37-62 646-671 (972)
282 4edh_A DTMP kinase, thymidylat 96.7 0.0018 6.3E-08 43.5 4.1 28 40-67 5-32 (213)
283 1udx_A The GTP-binding protein 96.7 0.00044 1.5E-08 51.1 1.0 30 36-65 152-181 (416)
284 3a8t_A Adenylate isopentenyltr 96.7 0.0011 3.9E-08 47.7 3.1 27 40-66 39-65 (339)
285 3zvl_A Bifunctional polynucleo 96.6 0.0013 4.3E-08 48.4 3.4 27 39-65 256-282 (416)
286 3n70_A Transport activator; si 96.6 0.0017 5.7E-08 40.7 3.5 27 39-65 22-48 (145)
287 1ltq_A Polynucleotide kinase; 96.6 0.0014 4.8E-08 45.5 3.5 23 42-64 3-25 (301)
288 1fnn_A CDC6P, cell division co 96.6 0.0018 6.2E-08 46.1 4.1 28 40-67 41-70 (389)
289 3llm_A ATP-dependent RNA helic 96.6 0.0016 5.3E-08 44.0 3.5 26 39-64 74-99 (235)
290 3crm_A TRNA delta(2)-isopenten 96.6 0.0015 5.2E-08 46.8 3.6 25 42-66 6-30 (323)
291 3lv8_A DTMP kinase, thymidylat 96.6 0.0023 8E-08 43.7 4.3 30 39-68 25-54 (236)
292 3lxx_A GTPase IMAP family memb 96.6 0.0014 4.8E-08 44.2 3.1 25 42-66 30-54 (239)
293 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0021 7.3E-08 48.5 4.4 25 42-66 65-89 (499)
294 1z2a_A RAS-related protein RAB 96.6 0.0016 5.6E-08 40.6 3.3 22 43-64 7-28 (168)
295 3ld9_A DTMP kinase, thymidylat 96.6 0.0021 7.3E-08 43.6 4.0 32 36-67 16-47 (223)
296 2r62_A Cell division protease 96.6 0.00083 2.9E-08 45.9 2.0 26 41-66 44-69 (268)
297 3exa_A TRNA delta(2)-isopenten 96.6 0.0016 5.5E-08 46.6 3.5 26 41-66 3-28 (322)
298 3syl_A Protein CBBX; photosynt 96.6 0.0021 7.1E-08 44.6 4.0 28 40-67 66-93 (309)
299 3v9p_A DTMP kinase, thymidylat 96.6 0.0017 5.9E-08 44.2 3.4 30 39-68 23-52 (227)
300 4tmk_A Protein (thymidylate ki 96.6 0.0026 8.8E-08 42.8 4.3 28 41-68 3-30 (213)
301 3qkt_A DNA double-strand break 96.6 0.002 6.7E-08 46.0 3.8 26 40-65 22-47 (339)
302 3foz_A TRNA delta(2)-isopenten 96.5 0.0019 6.5E-08 46.1 3.6 26 41-66 10-35 (316)
303 4ag6_A VIRB4 ATPase, type IV s 96.5 0.0026 8.8E-08 46.1 4.4 30 40-69 34-63 (392)
304 2ocp_A DGK, deoxyguanosine kin 96.5 0.002 6.9E-08 43.5 3.6 26 41-66 2-27 (241)
305 2h92_A Cytidylate kinase; ross 96.5 0.002 6.9E-08 42.6 3.5 24 42-65 4-27 (219)
306 2dyk_A GTP-binding protein; GT 96.5 0.0019 6.5E-08 40.1 3.2 22 43-64 3-24 (161)
307 2ce2_X GTPase HRAS; signaling 96.5 0.0019 6.4E-08 40.0 3.2 22 43-64 5-26 (166)
308 3pih_A Uvrabc system protein A 96.5 0.0018 6.2E-08 52.2 3.7 24 36-59 605-628 (916)
309 2chg_A Replication factor C sm 96.5 0.0029 9.8E-08 41.1 4.2 24 42-65 39-62 (226)
310 2ged_A SR-beta, signal recogni 96.5 0.0021 7.2E-08 41.3 3.5 23 42-64 49-71 (193)
311 1kao_A RAP2A; GTP-binding prot 96.5 0.002 6.9E-08 40.0 3.2 21 43-63 5-25 (167)
312 1u8z_A RAS-related protein RAL 96.5 0.0021 7.3E-08 39.9 3.3 22 43-64 6-27 (168)
313 3tmk_A Thymidylate kinase; pho 96.5 0.0028 9.5E-08 42.8 3.9 28 40-67 4-31 (216)
314 4b4t_K 26S protease regulatory 96.5 0.0028 9.7E-08 47.0 4.3 29 38-66 203-231 (428)
315 1z0j_A RAB-22, RAS-related pro 96.5 0.0022 7.5E-08 40.1 3.2 23 43-65 8-30 (170)
316 1ek0_A Protein (GTP-binding pr 96.5 0.0022 7.6E-08 40.0 3.3 22 43-64 5-26 (170)
317 3t15_A Ribulose bisphosphate c 96.5 0.0027 9.4E-08 44.4 4.0 26 40-65 35-60 (293)
318 1ky3_A GTP-binding protein YPT 96.5 0.0022 7.5E-08 40.5 3.2 23 42-64 9-31 (182)
319 1m8p_A Sulfate adenylyltransfe 96.5 0.0028 9.7E-08 48.5 4.3 28 40-67 395-422 (573)
320 1g16_A RAS-related protein SEC 96.5 0.0022 7.4E-08 40.1 3.2 21 43-63 5-25 (170)
321 3uk6_A RUVB-like 2; hexameric 96.4 0.0025 8.6E-08 45.3 3.8 26 41-66 70-95 (368)
322 1ofh_A ATP-dependent HSL prote 96.4 0.0025 8.6E-08 44.0 3.7 26 40-65 49-74 (310)
323 2zr9_A Protein RECA, recombina 96.4 0.0033 1.1E-07 45.3 4.5 30 39-68 59-88 (349)
324 2qmh_A HPR kinase/phosphorylas 96.4 0.0021 7.1E-08 43.2 3.1 27 39-65 32-58 (205)
325 3ice_A Transcription terminati 96.4 0.0028 9.5E-08 46.8 4.0 30 38-67 171-200 (422)
326 1z08_A RAS-related protein RAB 96.4 0.0023 7.9E-08 40.1 3.2 22 43-64 8-29 (170)
327 1c1y_A RAS-related protein RAP 96.4 0.0024 8.1E-08 39.8 3.3 21 43-63 5-25 (167)
328 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0023 7.9E-08 40.4 3.2 21 43-63 9-29 (177)
329 2ce7_A Cell division protein F 96.4 0.0034 1.2E-07 47.1 4.5 25 41-65 49-73 (476)
330 2fn4_A P23, RAS-related protei 96.4 0.0023 7.9E-08 40.4 3.1 22 43-64 11-32 (181)
331 2erx_A GTP-binding protein DI- 96.4 0.0021 7.2E-08 40.2 2.9 21 43-63 5-25 (172)
332 1ega_A Protein (GTP-binding pr 96.4 0.002 7E-08 45.2 3.1 25 41-65 8-32 (301)
333 4b4t_L 26S protease subunit RP 96.4 0.0033 1.1E-07 46.7 4.3 29 38-66 212-240 (437)
334 2atv_A RERG, RAS-like estrogen 96.4 0.0029 1E-07 41.0 3.6 31 34-64 21-51 (196)
335 4b4t_M 26S protease regulatory 96.4 0.0034 1.2E-07 46.6 4.3 29 38-66 212-240 (434)
336 2v1u_A Cell division control p 96.4 0.0023 7.9E-08 45.4 3.3 29 39-67 42-70 (387)
337 3con_A GTPase NRAS; structural 96.4 0.0022 7.5E-08 41.2 2.9 23 42-64 22-44 (190)
338 2nzj_A GTP-binding protein REM 96.4 0.0021 7.1E-08 40.5 2.7 22 43-64 6-27 (175)
339 1r2q_A RAS-related protein RAB 96.4 0.0028 9.5E-08 39.5 3.3 21 43-63 8-28 (170)
340 3eph_A TRNA isopentenyltransfe 96.4 0.0028 9.7E-08 46.7 3.7 25 42-66 3-27 (409)
341 3pqc_A Probable GTP-binding pr 96.4 0.0021 7.3E-08 41.1 2.7 23 42-64 24-46 (195)
342 3hws_A ATP-dependent CLP prote 96.3 0.0029 9.8E-08 45.3 3.6 26 40-65 50-75 (363)
343 3tqf_A HPR(Ser) kinase; transf 96.3 0.0032 1.1E-07 41.5 3.5 26 38-63 13-38 (181)
344 3bc1_A RAS-related protein RAB 96.3 0.0029 9.8E-08 40.4 3.3 21 43-63 13-33 (195)
345 2oil_A CATX-8, RAS-related pro 96.3 0.0029 9.9E-08 40.7 3.3 22 43-64 27-48 (193)
346 4dsu_A GTPase KRAS, isoform 2B 96.3 0.0029 1E-07 40.3 3.2 22 43-64 6-27 (189)
347 1d2n_A N-ethylmaleimide-sensit 96.3 0.0034 1.2E-07 43.0 3.7 26 40-65 63-88 (272)
348 2z4s_A Chromosomal replication 96.3 0.0029 1E-07 46.8 3.5 28 41-68 130-157 (440)
349 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.0039 1.3E-07 44.2 4.0 25 41-65 45-69 (322)
350 1svi_A GTP-binding protein YSX 96.3 0.0038 1.3E-07 40.1 3.7 25 40-64 22-46 (195)
351 4b4t_J 26S protease regulatory 96.3 0.0037 1.3E-07 46.1 4.0 29 38-66 179-207 (405)
352 1r8s_A ADP-ribosylation factor 96.3 0.0033 1.1E-07 39.2 3.3 22 43-64 2-23 (164)
353 2y8e_A RAB-protein 6, GH09086P 96.3 0.0031 1E-07 39.7 3.2 21 43-63 16-36 (179)
354 1upt_A ARL1, ADP-ribosylation 96.3 0.0032 1.1E-07 39.4 3.3 22 42-63 8-29 (171)
355 2r6a_A DNAB helicase, replicat 96.3 0.0052 1.8E-07 45.5 4.8 33 38-70 200-232 (454)
356 3q85_A GTP-binding protein REM 96.3 0.0025 8.7E-08 39.9 2.7 21 43-63 4-24 (169)
357 3k53_A Ferrous iron transport 96.3 0.0026 8.9E-08 43.8 3.0 24 43-66 5-28 (271)
358 1z0f_A RAB14, member RAS oncog 96.3 0.0033 1.1E-07 39.6 3.3 22 43-64 17-38 (179)
359 2a9k_A RAS-related protein RAL 96.3 0.0033 1.1E-07 39.9 3.3 23 42-64 19-41 (187)
360 3pvs_A Replication-associated 96.3 0.0052 1.8E-07 45.6 4.8 27 41-67 50-76 (447)
361 3clv_A RAB5 protein, putative; 96.3 0.004 1.4E-07 39.9 3.7 23 42-64 8-30 (208)
362 2qgz_A Helicase loader, putati 96.3 0.0044 1.5E-07 43.7 4.1 26 41-66 152-177 (308)
363 2g6b_A RAS-related protein RAB 96.2 0.0034 1.2E-07 39.7 3.3 22 43-64 12-33 (180)
364 3oes_A GTPase rhebl1; small GT 96.2 0.0032 1.1E-07 41.0 3.2 30 35-64 18-47 (201)
365 3eie_A Vacuolar protein sortin 96.2 0.0044 1.5E-07 43.7 4.0 25 41-65 51-75 (322)
366 3ihw_A Centg3; RAS, centaurin, 96.2 0.0034 1.2E-07 40.5 3.2 22 42-63 21-42 (184)
367 2efe_B Small GTP-binding prote 96.2 0.0035 1.2E-07 39.7 3.2 22 43-64 14-35 (181)
368 2bme_A RAB4A, RAS-related prot 96.2 0.0034 1.2E-07 40.0 3.2 22 43-64 12-33 (186)
369 2cxx_A Probable GTP-binding pr 96.2 0.0026 8.9E-08 40.6 2.6 22 43-64 3-24 (190)
370 2lkc_A Translation initiation 96.2 0.0041 1.4E-07 39.2 3.5 23 41-63 8-30 (178)
371 2wsm_A Hydrogenase expression/ 96.2 0.0049 1.7E-07 40.6 4.0 27 39-65 28-54 (221)
372 2hxs_A RAB-26, RAS-related pro 96.2 0.0034 1.2E-07 39.6 3.1 22 43-64 8-29 (178)
373 1nrj_B SR-beta, signal recogni 96.2 0.0036 1.2E-07 41.1 3.3 25 41-65 12-36 (218)
374 1sxj_D Activator 1 41 kDa subu 96.2 0.0036 1.2E-07 44.0 3.5 25 42-66 59-83 (353)
375 2bov_A RAla, RAS-related prote 96.2 0.0037 1.3E-07 40.5 3.3 22 43-64 16-37 (206)
376 1m2o_B GTP-binding protein SAR 96.2 0.0036 1.2E-07 40.5 3.2 23 41-63 23-45 (190)
377 3d8b_A Fidgetin-like protein 1 96.2 0.0048 1.6E-07 44.3 4.1 26 40-65 116-141 (357)
378 3lxw_A GTPase IMAP family memb 96.2 0.0034 1.2E-07 42.8 3.2 24 41-64 21-44 (247)
379 1um8_A ATP-dependent CLP prote 96.2 0.004 1.4E-07 44.7 3.7 25 41-65 72-96 (376)
380 3tkl_A RAS-related protein RAB 96.2 0.0039 1.3E-07 40.0 3.3 22 43-64 18-39 (196)
381 3q72_A GTP-binding protein RAD 96.2 0.0033 1.1E-07 39.2 2.8 21 43-63 4-24 (166)
382 3auy_A DNA double-strand break 96.2 0.0036 1.2E-07 45.1 3.4 24 40-63 24-47 (371)
383 3kkq_A RAS-related protein M-R 96.2 0.004 1.4E-07 39.6 3.3 22 43-64 20-41 (183)
384 3tw8_B RAS-related protein RAB 96.2 0.0022 7.6E-08 40.5 2.0 21 43-63 11-31 (181)
385 3t1o_A Gliding protein MGLA; G 96.2 0.004 1.4E-07 39.8 3.3 25 42-66 15-39 (198)
386 2qby_B CDC6 homolog 3, cell di 96.2 0.0049 1.7E-07 43.9 4.0 27 41-67 45-71 (384)
387 1vg8_A RAS-related protein RAB 96.1 0.004 1.4E-07 40.4 3.2 22 43-64 10-31 (207)
388 1m7b_A RND3/RHOE small GTP-bin 96.1 0.004 1.4E-07 39.9 3.2 22 43-64 9-30 (184)
389 2fg5_A RAB-22B, RAS-related pr 96.1 0.0039 1.3E-07 40.2 3.1 23 42-64 24-46 (192)
390 2gf9_A RAS-related protein RAB 96.1 0.0042 1.4E-07 39.9 3.3 22 43-64 24-45 (189)
391 1p5z_B DCK, deoxycytidine kina 96.1 0.0017 5.9E-08 44.5 1.4 27 39-65 22-48 (263)
392 4b4t_H 26S protease regulatory 96.1 0.0049 1.7E-07 46.2 4.0 29 38-66 240-268 (467)
393 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.0043 1.5E-07 39.3 3.3 21 43-63 7-27 (186)
394 1z06_A RAS-related protein RAB 96.1 0.0043 1.5E-07 39.9 3.2 22 42-63 21-42 (189)
395 2gf0_A GTP-binding protein DI- 96.1 0.0041 1.4E-07 40.0 3.1 22 42-63 9-30 (199)
396 1mky_A Probable GTP-binding pr 96.1 0.0032 1.1E-07 46.4 2.9 23 43-65 182-204 (439)
397 2bjv_A PSP operon transcriptio 96.1 0.0038 1.3E-07 42.6 3.1 27 40-66 28-54 (265)
398 2a5j_A RAS-related protein RAB 96.1 0.0044 1.5E-07 39.9 3.3 21 43-63 23-43 (191)
399 2xtp_A GTPase IMAP family memb 96.1 0.0039 1.3E-07 42.4 3.0 25 41-65 22-46 (260)
400 3pfi_A Holliday junction ATP-d 96.1 0.0046 1.6E-07 43.5 3.5 25 41-65 55-79 (338)
401 4hlc_A DTMP kinase, thymidylat 96.1 0.0056 1.9E-07 40.8 3.7 26 41-66 2-27 (205)
402 3t5g_A GTP-binding protein RHE 96.1 0.0045 1.6E-07 39.3 3.2 22 42-63 7-28 (181)
403 3dz8_A RAS-related protein RAB 96.1 0.0046 1.6E-07 39.8 3.2 23 43-65 25-47 (191)
404 2qp9_X Vacuolar protein sortin 96.1 0.0053 1.8E-07 44.1 3.7 26 41-66 84-109 (355)
405 2b6h_A ADP-ribosylation factor 96.0 0.0059 2E-07 39.5 3.7 25 38-62 26-50 (192)
406 2p5s_A RAS and EF-hand domain 96.0 0.0049 1.7E-07 40.0 3.3 23 41-63 28-50 (199)
407 4b4t_I 26S protease regulatory 96.0 0.0071 2.4E-07 45.0 4.4 29 38-66 213-241 (437)
408 1x3s_A RAS-related protein RAB 96.0 0.0051 1.7E-07 39.4 3.3 23 42-64 16-38 (195)
409 1zd9_A ADP-ribosylation factor 96.0 0.0051 1.8E-07 39.5 3.3 23 42-64 23-45 (188)
410 2cjw_A GTP-binding protein GEM 96.0 0.0051 1.7E-07 40.0 3.3 21 43-63 8-28 (192)
411 1zbd_A Rabphilin-3A; G protein 96.0 0.0044 1.5E-07 40.2 2.9 22 43-64 10-31 (203)
412 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0049 1.7E-07 40.1 3.2 22 43-64 10-31 (206)
413 2ew1_A RAS-related protein RAB 96.0 0.0049 1.7E-07 40.5 3.2 22 43-64 28-49 (201)
414 3te6_A Regulatory protein SIR3 96.0 0.005 1.7E-07 43.9 3.4 30 38-67 42-71 (318)
415 3upu_A ATP-dependent DNA helic 96.0 0.0065 2.2E-07 45.0 4.1 29 42-70 46-74 (459)
416 2qtf_A Protein HFLX, GTP-bindi 96.0 0.0039 1.3E-07 45.2 2.9 24 43-66 181-204 (364)
417 3co5_A Putative two-component 96.0 0.0023 7.8E-08 40.0 1.5 27 39-65 25-51 (143)
418 2hf9_A Probable hydrogenase ni 96.0 0.006 2.1E-07 40.3 3.6 26 40-65 37-62 (226)
419 3bwd_D RAC-like GTP-binding pr 96.0 0.007 2.4E-07 38.3 3.8 23 41-63 8-30 (182)
420 3hu3_A Transitional endoplasmi 96.0 0.007 2.4E-07 45.5 4.3 27 39-65 236-262 (489)
421 3reg_A RHO-like small GTPase; 96.0 0.0054 1.8E-07 39.5 3.3 23 42-64 24-46 (194)
422 3t34_A Dynamin-related protein 96.0 0.0045 1.5E-07 44.4 3.1 21 43-63 36-56 (360)
423 3c5c_A RAS-like protein 12; GD 96.0 0.0055 1.9E-07 39.5 3.2 23 42-64 22-44 (187)
424 1fzq_A ADP-ribosylation factor 96.0 0.0046 1.6E-07 39.6 2.8 24 41-64 16-39 (181)
425 3cph_A RAS-related protein SEC 96.0 0.0056 1.9E-07 39.9 3.3 23 42-64 21-43 (213)
426 2qen_A Walker-type ATPase; unk 95.9 0.0054 1.9E-07 42.8 3.3 24 41-64 31-54 (350)
427 1g8f_A Sulfate adenylyltransfe 95.9 0.0057 2E-07 46.3 3.5 29 39-67 393-421 (511)
428 1hqc_A RUVB; extended AAA-ATPa 95.9 0.0041 1.4E-07 43.3 2.6 26 40-65 37-62 (324)
429 1v5w_A DMC1, meiotic recombina 95.9 0.0062 2.1E-07 43.6 3.5 27 38-64 119-145 (343)
430 2fh5_B SR-beta, signal recogni 95.9 0.006 2.1E-07 39.9 3.3 24 41-64 7-30 (214)
431 2fv8_A H6, RHO-related GTP-bin 95.9 0.0057 2E-07 40.0 3.1 22 42-63 26-47 (207)
432 1gwn_A RHO-related GTP-binding 95.9 0.0058 2E-07 40.2 3.2 23 42-64 29-51 (205)
433 1ko7_A HPR kinase/phosphatase; 95.9 0.0064 2.2E-07 43.4 3.5 24 40-63 143-166 (314)
434 1zj6_A ADP-ribosylation factor 95.9 0.0051 1.8E-07 39.4 2.8 25 39-63 14-38 (187)
435 1ksh_A ARF-like protein 2; sma 95.9 0.0043 1.5E-07 39.6 2.4 25 40-64 17-41 (186)
436 2iwr_A Centaurin gamma 1; ANK 95.9 0.0043 1.5E-07 39.3 2.4 21 43-63 9-29 (178)
437 2o52_A RAS-related protein RAB 95.9 0.0047 1.6E-07 40.2 2.6 22 42-63 26-47 (200)
438 2orw_A Thymidine kinase; TMTK, 95.9 0.0088 3E-07 39.1 3.9 24 41-64 3-27 (184)
439 3dm5_A SRP54, signal recogniti 95.9 0.0084 2.9E-07 44.7 4.2 28 41-68 100-127 (443)
440 1f6b_A SAR1; gtpases, N-termin 95.8 0.0045 1.5E-07 40.4 2.4 22 42-63 26-47 (198)
441 2h17_A ADP-ribosylation factor 95.8 0.0047 1.6E-07 39.4 2.4 22 42-63 22-43 (181)
442 1x6v_B Bifunctional 3'-phospho 95.8 0.0073 2.5E-07 46.9 3.8 26 40-65 51-76 (630)
443 1tue_A Replication protein E1; 95.8 0.0056 1.9E-07 41.3 2.9 26 41-66 58-83 (212)
444 2axn_A 6-phosphofructo-2-kinas 95.8 0.0077 2.6E-07 45.6 3.9 26 40-65 34-59 (520)
445 3b1v_A Ferrous iron uptake tra 95.8 0.0057 2E-07 42.5 2.9 22 43-64 5-26 (272)
446 1moz_A ARL1, ADP-ribosylation 95.8 0.0072 2.5E-07 38.3 3.2 24 39-62 16-39 (183)
447 2zts_A Putative uncharacterize 95.8 0.011 3.8E-07 39.4 4.3 26 38-63 27-52 (251)
448 1sxj_A Activator 1 95 kDa subu 95.8 0.0085 2.9E-07 45.1 4.0 25 41-65 77-101 (516)
449 2qu8_A Putative nucleolar GTP- 95.8 0.0048 1.6E-07 41.1 2.4 24 41-64 29-52 (228)
450 3t5d_A Septin-7; GTP-binding p 95.8 0.0039 1.3E-07 43.0 2.0 21 43-63 10-30 (274)
451 3fdi_A Uncharacterized protein 95.8 0.0084 2.9E-07 39.7 3.6 26 41-66 6-31 (201)
452 3llu_A RAS-related GTP-binding 95.8 0.0071 2.4E-07 39.2 3.1 24 41-64 20-43 (196)
453 2atx_A Small GTP binding prote 95.8 0.0072 2.5E-07 38.9 3.1 22 43-64 20-41 (194)
454 2gco_A H9, RHO-related GTP-bin 95.8 0.0072 2.5E-07 39.3 3.2 22 42-63 26-47 (201)
455 1jr3_A DNA polymerase III subu 95.7 0.0092 3.1E-07 42.2 3.9 27 41-67 38-64 (373)
456 1g8p_A Magnesium-chelatase 38 95.7 0.0043 1.5E-07 43.7 2.1 26 41-66 45-70 (350)
457 2f7s_A C25KG, RAS-related prot 95.7 0.006 2E-07 40.0 2.7 21 43-63 27-47 (217)
458 4bas_A ADP-ribosylation factor 95.7 0.0044 1.5E-07 39.9 2.0 24 41-64 17-40 (199)
459 2q3h_A RAS homolog gene family 95.7 0.0062 2.1E-07 39.4 2.7 24 41-64 20-43 (201)
460 2z43_A DNA repair and recombin 95.7 0.0079 2.7E-07 42.6 3.4 28 38-65 104-131 (324)
461 2zan_A Vacuolar protein sortin 95.7 0.0096 3.3E-07 44.0 3.9 26 40-65 166-191 (444)
462 3cbq_A GTP-binding protein REM 95.7 0.0056 1.9E-07 39.9 2.4 21 42-62 24-44 (195)
463 3iby_A Ferrous iron transport 95.7 0.0072 2.5E-07 41.5 3.1 23 43-65 3-25 (256)
464 3vfd_A Spastin; ATPase, microt 95.7 0.01 3.5E-07 42.9 4.0 25 41-65 148-172 (389)
465 2j1l_A RHO-related GTP-binding 95.7 0.0061 2.1E-07 40.1 2.6 22 42-63 35-56 (214)
466 1ypw_A Transitional endoplasmi 95.7 0.0036 1.2E-07 49.7 1.7 28 39-66 509-536 (806)
467 2qag_A Septin-2, protein NEDD5 95.7 0.0043 1.5E-07 44.8 2.0 22 43-64 39-60 (361)
468 3bh0_A DNAB-like replicative h 95.7 0.012 4E-07 41.6 4.2 29 38-66 65-93 (315)
469 2il1_A RAB12; G-protein, GDP, 95.7 0.0075 2.6E-07 38.9 2.9 21 43-63 28-48 (192)
470 1wf3_A GTP-binding protein; GT 95.7 0.0077 2.6E-07 42.4 3.2 23 42-64 8-30 (301)
471 4ad8_A DNA repair protein RECN 95.7 0.0028 9.6E-08 47.7 1.0 25 42-66 61-85 (517)
472 1h65_A Chloroplast outer envel 95.7 0.0076 2.6E-07 41.4 3.1 23 42-64 40-62 (270)
473 2hup_A RAS-related protein RAB 95.6 0.0083 2.9E-07 39.1 3.1 21 43-63 31-51 (201)
474 4gzl_A RAS-related C3 botulinu 95.6 0.0087 3E-07 39.1 3.2 23 41-63 30-52 (204)
475 1bif_A 6-phosphofructo-2-kinas 95.6 0.01 3.4E-07 44.1 3.8 27 40-66 38-64 (469)
476 4dhe_A Probable GTP-binding pr 95.6 0.005 1.7E-07 40.5 2.0 24 41-64 29-52 (223)
477 2h57_A ADP-ribosylation factor 95.6 0.0039 1.3E-07 40.1 1.4 25 41-65 21-45 (190)
478 2r44_A Uncharacterized protein 95.6 0.0067 2.3E-07 42.7 2.7 26 40-65 45-70 (331)
479 2c9o_A RUVB-like 1; hexameric 95.6 0.011 3.8E-07 43.7 4.0 27 40-66 62-88 (456)
480 3cpj_B GTP-binding protein YPT 95.6 0.0092 3.1E-07 39.5 3.2 22 43-64 15-36 (223)
481 2fu5_C RAS-related protein RAB 95.6 0.0043 1.5E-07 39.4 1.6 21 43-63 10-30 (183)
482 3u61_B DNA polymerase accessor 95.6 0.015 5E-07 40.7 4.4 26 41-66 48-73 (324)
483 3p32_A Probable GTPase RV1496/ 95.6 0.013 4.5E-07 42.0 4.2 27 40-66 78-104 (355)
484 3iev_A GTP-binding protein ERA 95.6 0.0086 2.9E-07 42.1 3.2 23 42-64 11-33 (308)
485 3hjn_A DTMP kinase, thymidylat 95.6 0.014 4.8E-07 38.5 4.0 26 43-68 2-27 (197)
486 3q3j_B RHO-related GTP-binding 95.6 0.0097 3.3E-07 39.3 3.3 24 41-64 27-50 (214)
487 3pxg_A Negative regulator of g 95.6 0.013 4.5E-07 43.6 4.3 28 39-66 199-226 (468)
488 3def_A T7I23.11 protein; chlor 95.5 0.0088 3E-07 40.9 3.0 24 41-64 36-59 (262)
489 1r6b_X CLPA protein; AAA+, N-t 95.5 0.02 7E-07 44.8 5.3 29 38-66 204-232 (758)
490 3gmt_A Adenylate kinase; ssgci 95.5 0.013 4.3E-07 40.1 3.7 24 42-65 9-32 (230)
491 2j0v_A RAC-like GTP-binding pr 95.5 0.01 3.5E-07 38.7 3.2 22 42-63 10-31 (212)
492 1ojl_A Transcriptional regulat 95.5 0.012 4E-07 41.4 3.6 28 39-66 23-50 (304)
493 2dy1_A Elongation factor G; tr 95.5 0.0093 3.2E-07 46.4 3.4 30 38-67 6-35 (665)
494 1jwy_B Dynamin A GTPase domain 95.5 0.0089 3E-07 41.6 3.0 24 42-65 25-48 (315)
495 3i8s_A Ferrous iron transport 95.5 0.0093 3.2E-07 41.2 3.0 23 43-65 5-27 (274)
496 2dby_A GTP-binding protein; GD 95.5 0.01 3.5E-07 43.1 3.3 23 43-65 3-25 (368)
497 2fna_A Conserved hypothetical 95.5 0.012 4.2E-07 41.0 3.7 24 42-65 31-54 (357)
498 2ohf_A Protein OLA1, GTP-bindi 95.5 0.0086 2.9E-07 44.0 2.9 27 38-64 19-45 (396)
499 3a1s_A Iron(II) transport prot 95.5 0.0099 3.4E-07 40.8 3.1 22 43-64 7-28 (258)
500 2v3c_C SRP54, signal recogniti 95.5 0.0094 3.2E-07 44.2 3.1 28 41-68 99-126 (432)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.5e-37 Score=240.70 Aligned_cols=114 Identities=45% Similarity=0.803 Sum_probs=105.8
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc---hhH
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS---NLI 76 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~---~~~ 76 (114)
+||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..+.+++++...++... ..+
T Consensus 53 ~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~i 132 (697)
T 1lkx_A 53 NLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERI 132 (697)
T ss_dssp CCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred CCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhcCCCCCccccH
Confidence 5899999999999999999999999999999999987 477999999999999999999999999999877222 357
Q ss_pred HHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 77 TEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 77 ~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 133 ~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~ 170 (697)
T 1lkx_A 133 SKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNA 170 (697)
T ss_dssp HHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEECT
T ss_pred HHHHHhcchHHHHhcCcccCCCCCcchhheeEEEEECC
Confidence 88999999999999999999999999999999999973
No 2
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=9.8e-38 Score=243.89 Aligned_cols=114 Identities=46% Similarity=0.763 Sum_probs=105.3
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-------
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP------- 72 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~------- 72 (114)
+||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..|.+++++...++..
T Consensus 130 ~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yla~v~~~~~~~~~~~ 209 (783)
T 4db1_A 130 WLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQ 209 (783)
T ss_dssp CCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHSBCCCC-----
T ss_pred cCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhhhhhccCCCcccccc
Confidence 5899999999999999999999999999999999987 47799999999999999999999999998875432
Q ss_pred ---chhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 73 ---SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 73 ---~~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
...++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 210 ~~~~~~ve~~il~snpiLEAFGNAkT~rNdNSSRFGK~i~i~F~~ 254 (783)
T 4db1_A 210 SPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGA 254 (783)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECT
T ss_pred ccccccHHHHHHHhHHHHHhccCcccCCCCCCCccceeEEEEECC
Confidence 135889999999999999999999999999999999999973
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1.2e-37 Score=243.94 Aligned_cols=114 Identities=46% Similarity=0.841 Sum_probs=106.7
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc-hhHHH
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS-NLITE 78 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~-~~~~~ 78 (114)
+||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..+.+++++...++... ..+++
T Consensus 115 ~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~ie~ 194 (795)
T 1w7j_A 115 QLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEE 194 (795)
T ss_dssp CCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHTCCSSSSCHHH
T ss_pred ccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHhhcCCCCccchHH
Confidence 5899999999999999999999999999999999987 477999999999999999999999999998876543 47899
Q ss_pred HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 195 ~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~ 230 (795)
T 1w7j_A 195 KVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDK 230 (795)
T ss_dssp HHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECT
T ss_pred HHHHHHHHHHHhcCccCCCCCCccccceEEEEEECC
Confidence 999999999999999999999999999999999973
No 4
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=1.2e-37 Score=242.85 Aligned_cols=114 Identities=47% Similarity=0.810 Sum_probs=105.6
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc----hh
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS----NL 75 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~----~~ 75 (114)
+||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..+.+++++...++... ..
T Consensus 131 ~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~ 210 (770)
T 1w9i_A 131 RIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGV 210 (770)
T ss_dssp CCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC------CH
T ss_pred cccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHHHHHhccccCCcccCc
Confidence 5899999999999999999999999999999999987 477999999999999999999999999998765432 46
Q ss_pred HHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 76 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 76 ~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 211 ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~ 249 (770)
T 1w9i_A 211 LEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNS 249 (770)
T ss_dssp HHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEEECC
Confidence 889999999999999999999999999999999999973
No 5
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=1.4e-37 Score=244.57 Aligned_cols=114 Identities=45% Similarity=0.764 Sum_probs=105.7
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc------
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS------ 73 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~------ 73 (114)
+||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..+.+++++...++...
T Consensus 128 ~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~ 207 (837)
T 1kk8_A 128 RLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEA 207 (837)
T ss_dssp CCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC----
T ss_pred CCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHHHHHHHhcccCCcccccc
Confidence 5899999999999999999999999999999999987 477999999999999999999999999998765431
Q ss_pred -----hhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 74 -----NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 74 -----~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
..++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 208 ~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~ 253 (837)
T 1kk8_A 208 SDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGP 253 (837)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECT
T ss_pred cccccccHHHHHHHHHHHHHHhcCccCCCCCCCCCceeEEEEEECC
Confidence 45789999999999999999999999999999999999973
No 6
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=2.7e-37 Score=241.83 Aligned_cols=113 Identities=50% Similarity=0.859 Sum_probs=101.5
Q ss_pred CC-CCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHH
Q psy7658 1 MY-DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITE 78 (114)
Q Consensus 1 ~l-~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~ 78 (114)
+| |+|+++++..|+++.+.++|||||++++.||++|.. .++|+|+|+||||||||+..+.+++++....|.. ..+++
T Consensus 98 ~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~-~~ie~ 176 (784)
T 2v26_A 98 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTG-QDIDD 176 (784)
T ss_dssp CCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC-------C
T ss_pred CcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHHHHHhhcCCC-CcHHH
Confidence 47 699999999999999999999999999999999874 7799999999999999999999999999876543 36788
Q ss_pred HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 177 ~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~ 212 (784)
T 2v26_A 177 RIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 212 (784)
T ss_dssp HHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECT
T ss_pred HHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEec
Confidence 999999999999999999999999999999999973
No 7
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=3.5e-37 Score=246.26 Aligned_cols=113 Identities=50% Similarity=0.851 Sum_probs=103.9
Q ss_pred CCC-CCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHH
Q psy7658 1 MYD-MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITE 78 (114)
Q Consensus 1 ~l~-iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~ 78 (114)
+|| ||+++++..|+++.+.++|||||++++.||++|. ...+|+|+|+||||||||+..+.+++++...++.. ..+++
T Consensus 102 ~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~yLa~~~~~~-~~ie~ 180 (1052)
T 4anj_A 102 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTG-QDIDD 180 (1052)
T ss_dssp CCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC----CTT
T ss_pred CccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHHHHHhcCCC-ccHHH
Confidence 476 9999999999999999999999999999999987 47799999999999999999999999999876654 34788
Q ss_pred HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 181 ~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~ 216 (1052)
T 4anj_A 181 RIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 216 (1052)
T ss_dssp HHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECT
T ss_pred HHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECC
Confidence 999999999999999999999999999999999973
No 8
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=7.4e-37 Score=244.32 Aligned_cols=114 Identities=46% Similarity=0.800 Sum_probs=106.2
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc----hh
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS----NL 75 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~----~~ 75 (114)
+||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..+.+++++...++... ..
T Consensus 131 ~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~ 210 (1010)
T 1g8x_A 131 RIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGV 210 (1010)
T ss_dssp CCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCCTTTSSH
T ss_pred cccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHHhcccCCCcccch
Confidence 5899999999999999999999999999999999987 477999999999999999999999999998765432 47
Q ss_pred HHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 76 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 76 ~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 211 ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~ 249 (1010)
T 1g8x_A 211 LEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNN 249 (1010)
T ss_dssp HHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEEECC
Confidence 889999999999999999999999999999999999973
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=4.5e-37 Score=245.52 Aligned_cols=114 Identities=46% Similarity=0.782 Sum_probs=105.1
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc------
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS------ 73 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~------ 73 (114)
+||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..+.+++++...++...
T Consensus 105 ~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~ 184 (995)
T 2ycu_A 105 QLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKGRKEPG 184 (995)
T ss_dssp CCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHHHHHHHHSCCSSSCSSSC
T ss_pred ccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHHhcccCCcccccc
Confidence 5899999999999999999999999999999999987 477999999999999999999999999998865432
Q ss_pred --hhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 74 --NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 74 --~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
..++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 185 ~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~ 227 (995)
T 2ycu_A 185 VPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDV 227 (995)
T ss_dssp CCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECT
T ss_pred ccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECC
Confidence 45788999999999999999999999999999999999973
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=8.2e-37 Score=245.47 Aligned_cols=114 Identities=46% Similarity=0.841 Sum_probs=106.5
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc-hhHHH
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS-NLITE 78 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~-~~~~~ 78 (114)
+||+|+++++..|++..+.++|||||++++.||++|. ...+|+|+|+|+||||||+..+.+++++...++... ..+++
T Consensus 115 ~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~ie~ 194 (1080)
T 2dfs_A 115 QLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEE 194 (1080)
T ss_dssp CCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTTCCTTTCTHH
T ss_pred ccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHHHHHHHHHhhccCCCccchHH
Confidence 5899999999999999999999999999999999987 477999999999999999999999999998876543 46889
Q ss_pred HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658 79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114 (114)
Q Consensus 79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~ 114 (114)
+|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus 195 ~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~ 230 (1080)
T 2dfs_A 195 KVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDK 230 (1080)
T ss_dssp HHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECC
Confidence 999999999999999999999999999999999973
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=1.3e-36 Score=246.55 Aligned_cols=113 Identities=45% Similarity=0.789 Sum_probs=105.6
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-------
Q psy7658 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP------- 72 (114)
Q Consensus 1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~------- 72 (114)
+||+|+++++..|+++.+.++|||||++++.||++|. ...+|+|+|+|+||||||+..+.+++++...++..
T Consensus 128 ~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~~ 207 (1184)
T 1i84_S 128 QLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTS 207 (1184)
T ss_dssp CCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHHHHHHHHHHHHSSCCSCC----
T ss_pred CCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHHHHHHHHHHHHhcCCCcccccc
Confidence 5899999999999999999999999999999999987 47799999999999999999999999999886542
Q ss_pred --------chhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEec
Q psy7658 73 --------SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK 113 (114)
Q Consensus 73 --------~~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~ 113 (114)
...++++|.+++|||||||||||.+|+||||||||++|+|+
T Consensus 208 ~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~NSSRfgk~~~i~f~ 256 (1184)
T 1i84_S 208 ITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD 256 (1184)
T ss_dssp --CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEEEECSCEEEEEEEC
T ss_pred cccccccccchHHHHHHHHHHHHHHhcCCcCCCCccccccceeEEEEEC
Confidence 24678999999999999999999999999999999999997
No 12
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.65 E-value=2.4e-08 Score=64.79 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=31.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++|+|++||||||+++.+++.+ +..|..
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V 63 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV 63 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence 445789999999999999999999999999 766654
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.64 E-value=6.3e-09 Score=71.44 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++|+|||||||||+++++++++.+..|..
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I 62 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE
Confidence 5578899999999999999999999999998887654
No 14
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.60 E-value=1.3e-08 Score=71.11 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=33.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|||||||||+++++++++.+..|..
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I 68 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC 68 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 4578899999999999999999999999998887754
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.60 E-value=9.4e-09 Score=70.07 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=32.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+|||||||+++++++++.+..|..
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i 61 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 4578899999999999999999999999998876643
No 16
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.58 E-value=1.6e-08 Score=69.66 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=33.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 59 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 5578899999999999999999999999998887754
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.58 E-value=1.3e-08 Score=70.72 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+|||||||+++++++++.+.+|..
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i 64 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 4578899999999999999999999999998876643
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.57 E-value=1.3e-08 Score=70.96 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i 63 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 4578899999999999999999999999998876643
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.57 E-value=1.3e-08 Score=71.57 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|||||||||+++++++++.+..|..
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I 65 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEE
Confidence 4578899999999999999999999999998876643
No 20
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.56 E-value=1.5e-08 Score=70.76 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++|+|+|||||||+++++++++.+..|..
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I 81 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Confidence 4467899999999999999999999999998776643
No 21
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.56 E-value=1.5e-08 Score=69.71 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 63 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4578899999999999999999999999998876643
No 22
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.55 E-value=1.5e-08 Score=70.00 Aligned_cols=37 Identities=35% Similarity=0.512 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I 66 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 5578999999999999999999999999998876643
No 23
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.55 E-value=1.5e-08 Score=69.59 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 61 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEE
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 557889999999999999999999999999877664
No 24
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.54 E-value=1.5e-08 Score=68.86 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+|||||||+++++++++.+..|..
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I 66 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 4578899999999999999999999999998776643
No 25
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.54 E-value=2.1e-08 Score=72.90 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.++++++|+|||||||||+++++++++.+.+|..
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I 61 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE
Confidence 4578899999999999999999999999998876643
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.54 E-value=1.8e-08 Score=70.05 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=32.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+.+|..
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I 72 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 4578899999999999999999999999998776643
No 27
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.54 E-value=1.8e-08 Score=68.89 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=32.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 64 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccE
Confidence 557889999999999999999999999999877654
No 28
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.53 E-value=2e-08 Score=70.68 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=32.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~ 77 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeE
Confidence 446789999999999999999999999999887654
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.53 E-value=2.1e-08 Score=70.21 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++|+|+|||||||+++++++++.+..|..
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I 76 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence 4578899999999999999999999999998877654
No 30
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.52 E-value=2.8e-08 Score=72.78 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+|++++|+|||||||||+++++++++.+..|..
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I 60 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEE
Confidence 4578899999999999999999999999998877643
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.51 E-value=2.4e-08 Score=69.72 Aligned_cols=37 Identities=19% Similarity=0.427 Sum_probs=33.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I 64 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 5578899999999999999999999999998876654
No 32
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.50 E-value=2.6e-08 Score=69.10 Aligned_cols=36 Identities=14% Similarity=0.370 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 61 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEE
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 457889999999999999999999999999877664
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.49 E-value=3.5e-08 Score=71.71 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++|+|||||||||+++++++++.+.+|..
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE
Confidence 4578899999999999999999999999998876643
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.49 E-value=3.5e-08 Score=71.63 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=32.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.++++++|+|||||||||+++++++++.+..|.
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 71 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD 71 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence 457889999999999999999999999999877664
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.48 E-value=3.9e-08 Score=67.75 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=31.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+ ++++|+|+|||||||+++++++++.+..|.
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 54 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGE 54 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 45778 999999999999999999999999877654
No 36
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.48 E-value=4.1e-08 Score=71.56 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.+|++++|+|||||||||+++++.+++.+.+|..
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I 85 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV 85 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEE
Confidence 4478899999999999999999999999998876643
No 37
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.48 E-value=4.1e-08 Score=71.43 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.++++++|+|||||||||+++++++++.+..|.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 59 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceE
Confidence 457889999999999999999999999999887664
No 38
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.47 E-value=4.2e-08 Score=71.61 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.++++++|+|||||||||+++++++++.+.+|.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 59 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccE
Confidence 457889999999999999999999999999877664
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.47 E-value=4.4e-08 Score=71.53 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=32.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++|+|||||||||+++++++++.+.+|..
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 68 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE
Confidence 4477899999999999999999999999998876643
No 40
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.46 E-value=3.8e-08 Score=68.18 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=32.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+|||||||+++++++++.+. |..
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i 56 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSI 56 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEE
Confidence 457889999999999999999999999999877 654
No 41
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.46 E-value=4.1e-08 Score=67.89 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=30.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHH--hhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQY--LAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~--~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||++++++++ +.+.+|.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~ 61 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGE 61 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceE
Confidence 55789999999999999999999999998 5555553
No 42
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.46 E-value=3.4e-08 Score=71.52 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.++++++|+|||||||||+++++++++.+..|..
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 57 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE
Confidence 5578899999999999999999999999998876643
No 43
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.45 E-value=1.4e-07 Score=63.66 Aligned_cols=49 Identities=27% Similarity=0.223 Sum_probs=37.1
Q ss_pred CCCeeeeehhhhhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 21 LSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 21 ~~phiy~~~~~~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
+.|..|.- ..++.+ +.++++++|+|+|||||||++++++++ .+.+|...
T Consensus 5 i~pk~~g~-~~~l~~--i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~ 53 (208)
T 3b85_A 5 IRPKTLGQ-KHYVDA--IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS 53 (208)
T ss_dssp CCCCSHHH-HHHHHH--HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred cccCCHhH-HHHHHh--ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence 34555532 124344 367999999999999999999999999 88888763
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.44 E-value=4.4e-08 Score=69.30 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=32.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 94 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 446789999999999999999999999999877664
No 45
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.43 E-value=3.3e-08 Score=71.71 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.++++++|+|||||||||+++++++++.+..|.
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 61 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEE
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 457889999999999999999999999999887664
No 46
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.43 E-value=1.7e-07 Score=62.68 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=25.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+.++++++|+|||||||||+++++++++.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999999999984
No 47
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.42 E-value=3.7e-08 Score=70.21 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
|.+.++++++|+|+|||||||+++++++++.+..|..
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I 111 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEE
Confidence 4467899999999999999999999999998877654
No 48
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.41 E-value=3e-07 Score=64.00 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=34.4
Q ss_pred hhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh-CCCC
Q psy7658 32 AYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAV-NKSP 72 (114)
Q Consensus 32 ~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~-~g~~ 72 (114)
+++.+...++++++|+|+|||||||+++.+++++.+. .|..
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I 57 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 57 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEE
Confidence 4455557789999999999999999999999999876 6643
No 49
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.41 E-value=1.6e-07 Score=63.42 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=25.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+.+.++++++|+|||||||||+++++++++
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456789999999999999999999999987
No 50
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.40 E-value=7.3e-08 Score=67.29 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=30.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh--hhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL--AAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~--~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++ .+..|.
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~ 78 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT 78 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE
Confidence 446789999999999999999999999984 344443
No 51
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.39 E-value=7.3e-08 Score=67.04 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=30.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+.+.+|++++|+|+|||||||+++++++++.+ .|.
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~ 75 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGD 75 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEE
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeE
Confidence 55788999999999999999999999999864 453
No 52
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.38 E-value=2.3e-07 Score=60.40 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=29.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHH------------HHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTK------------LVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~------------~i~~~~~~~~g~ 71 (114)
|...++++++++|+|||||||+++ .+.+++....+.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~ 51 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDEND 51 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTC
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccc
Confidence 556789999999999999999999 666666555443
No 53
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.37 E-value=2.8e-07 Score=60.90 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=25.5
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..++++++|+|++||||||+++++.+++.
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999999999863
No 54
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.37 E-value=9.2e-08 Score=66.75 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=31.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+... +++++|+|+|||||||+++++++++ +..|..
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I 60 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNI 60 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEE
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEE
Confidence 5578 9999999999999999999999999 876654
No 55
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.33 E-value=3.7e-07 Score=59.46 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=31.1
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
++....++.++|.|++|+||||+++.+++.+.+..|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 3445568999999999999999999999999866553
No 56
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.32 E-value=1.5e-07 Score=69.05 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
|.+.++++++|+|||||||||+++++++++. ..|.
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~ 76 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGE 76 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEE
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeE
Confidence 4478899999999999999999999999987 5553
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.31 E-value=1.7e-07 Score=71.31 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=38.0
Q ss_pred CCeeeeehhhhhhh--ch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 22 SPHLFAIGSAAYSA--LA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 22 ~phiy~~~~~~~~~--l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+-|-|... .|+- +. ..+|++++|+|||||||||+++++++.+.+..|..
T Consensus 5 ~~~~~~~~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 5 VIHRYKVN--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp EEEESSTT--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CceecCCC--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 34666433 3332 43 46799999999999999999999999998888765
No 58
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.30 E-value=6.1e-07 Score=63.70 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=31.6
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
...++++++++|++||||||+++.+++++.+.+|+.
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V 131 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 131 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 345789999999999999999999999998877654
No 59
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.28 E-value=5.9e-07 Score=63.99 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=27.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+.+.++++++|+|++||||||+++++++++
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 346789999999999999999999999998
No 60
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.27 E-value=6.5e-07 Score=59.79 Aligned_cols=30 Identities=37% Similarity=0.562 Sum_probs=27.4
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
.++++++|+|+|||||||+++.+.+++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 568999999999999999999999999753
No 61
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.27 E-value=3.5e-07 Score=69.97 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=33.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 400 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence 3467899999999999999999999999999888754
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.26 E-value=5e-07 Score=67.58 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=32.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC-C
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK-S 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g-~ 71 (114)
+....|++++|+|++||||||++|+++++..+..| .
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~ 169 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQ 169 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCC
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCce
Confidence 44678999999999999999999999999988887 6
No 63
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.26 E-value=7.5e-07 Score=59.24 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=25.1
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..++++++|+|++||||||+++.+.+++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999999999999865
No 64
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.25 E-value=6.5e-07 Score=58.81 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+++++|+|||||||||+++++++.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46799999999999999999999986
No 65
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.25 E-value=8.8e-07 Score=63.14 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=29.5
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
..++++++|+|+|||||||+++.+.+++.+..|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 466899999999999999999999999987654
No 66
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.24 E-value=7.7e-07 Score=60.44 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=26.2
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
..++++++|+|||||||||+++.+++.+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 457899999999999999999999999864
No 67
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.23 E-value=5.4e-07 Score=68.50 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=31.9
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+|++++|+|+|||||||+++++.+.+.+..|..
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~ 78 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD 78 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 57899999999999999999999999998887763
No 68
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.23 E-value=4.3e-07 Score=61.50 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=21.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHH-HHh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVM-QYL 65 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~-~~~ 65 (114)
|...++++++|+|++||||||+++.+. +++
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 556789999999999999999999999 886
No 69
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.22 E-value=4.7e-07 Score=69.83 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=32.4
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
..+|++++|+|||||||||+++++.+++.+..|..
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 46799999999999999999999999999988875
No 70
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.22 E-value=5.6e-07 Score=68.43 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=31.5
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i 343 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI 343 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 36799999999999999999999999998877754
No 71
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.22 E-value=4.4e-07 Score=69.03 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=32.1
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.++++++|+|+|||||||+++++++++.+..|..
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 325 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 46899999999999999999999999999888765
No 72
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.21 E-value=8.1e-07 Score=59.09 Aligned_cols=27 Identities=41% Similarity=0.560 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.++.++|+|||||||||+++.+++++.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 468899999999999999999999875
No 73
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.21 E-value=8.8e-07 Score=58.47 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=26.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
|.+.++++++|+|++||||||+++.+.+.+.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 34567899999999999999999999998733
No 74
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.21 E-value=5.8e-07 Score=69.28 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=31.6
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 36799999999999999999999999998877754
No 75
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.21 E-value=5.9e-07 Score=65.13 Aligned_cols=37 Identities=35% Similarity=0.450 Sum_probs=32.2
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
++.+.+++.++|+|++||||||+++.+++++.+..|.
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 3446789999999999999999999999999876653
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.21 E-value=1.1e-06 Score=63.86 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=31.5
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
...++++++++|++|+||||+++.+++++.+.+|+.
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V 188 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 188 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence 345789999999999999999999999998877654
No 77
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.21 E-value=1e-06 Score=60.25 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=25.3
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
|...++.+++|+|++||||||+++.+.+.+
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999999875
No 78
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.19 E-value=1.2e-06 Score=57.31 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.++.++|+|||||||||+++.+++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999999999875
No 79
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.19 E-value=4e-07 Score=69.64 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 400 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeE
Confidence 4467899999999999999999999999998877643
No 80
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.19 E-value=1.1e-06 Score=66.18 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=31.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+ ++++|+|+|||||||+++++++++.+..|..
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I 60 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLL 60 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTC
T ss_pred EEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence 44667 9999999999999999999999998887764
No 81
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.18 E-value=1.3e-06 Score=58.08 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
+++++|+|++|+||||+++++++++. ..|
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 57899999999999999999999997 665
No 82
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.17 E-value=1.8e-06 Score=61.30 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
++++++|+|++||||||+++.+++++.+.+|..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V 133 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV 133 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 578999999999999999999999998876643
No 83
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.16 E-value=3.9e-07 Score=69.88 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=32.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|++++|+|+|||||||+++.+++++.+..|..
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 401 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE
Confidence 4467899999999999999999999999998877643
No 84
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.15 E-value=1.6e-06 Score=65.39 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=31.1
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
...+++++|+|++||||||+++.+++++...+|..
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V 324 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV 324 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeE
Confidence 45689999999999999999999999998876654
No 85
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.14 E-value=1.3e-06 Score=57.08 Aligned_cols=27 Identities=26% Similarity=0.569 Sum_probs=24.9
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
..++++++|+|++||||||+++.+.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 567899999999999999999999886
No 86
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.14 E-value=2.5e-06 Score=56.55 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=27.6
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+....+++++|+|++||||||+++.+.+.+.
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4456789999999999999999999999886
No 87
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.14 E-value=6.6e-07 Score=64.21 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=31.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+...+++.++|+|++||||||+++.+++++.+..|.
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~ 201 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERI 201 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCE
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcE
Confidence 346779999999999999999999999999876654
No 88
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.13 E-value=5e-07 Score=69.34 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 3467899999999999999999999999998887654
No 89
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.13 E-value=2.5e-06 Score=61.84 Aligned_cols=38 Identities=21% Similarity=0.504 Sum_probs=31.8
Q ss_pred hhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658 32 AYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVN 69 (114)
Q Consensus 32 ~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~ 69 (114)
.++.+...++..++|+|++||||||+++.+++++.+..
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~ 151 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK 151 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC
Confidence 34455556778999999999999999999999998763
No 90
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.12 E-value=2.2e-06 Score=61.51 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=30.7
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
.++++++++|++|+||||+++.+++++.+.+|..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V 160 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV 160 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 4689999999999999999999999998887754
No 91
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.12 E-value=1e-06 Score=67.94 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=32.0
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+|++++|+|+|||||||+++++.+++.+..|..
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~ 148 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc
Confidence 56899999999999999999999999998887763
No 92
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.12 E-value=2.8e-07 Score=70.43 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|||||||||+++.+++++.+..|+.
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 398 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE
Confidence 4468899999999999999999999999998887654
No 93
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.11 E-value=2.3e-06 Score=56.71 Aligned_cols=29 Identities=34% Similarity=0.344 Sum_probs=24.3
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....+++++|+|++||||||+++.+.+.+
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568999999999999999999998876
No 94
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.11 E-value=2.7e-06 Score=61.90 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=31.9
Q ss_pred hhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh-CCC
Q psy7658 34 SALATSGNQVVVISGESGSGKTECTKLVMQYLAAV-NKS 71 (114)
Q Consensus 34 ~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~-~g~ 71 (114)
+.+...+++.++|+|++||||||+++.+++++.+. .|.
T Consensus 129 ~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~ 167 (372)
T 2ewv_A 129 LELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYH 167 (372)
T ss_dssp HHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCE
T ss_pred HHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcE
Confidence 33445678999999999999999999999999876 553
No 95
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.10 E-value=1.8e-06 Score=57.72 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=26.9
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
..++++++|+|+|||||||+++.+++....
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 567999999999999999999999986654
No 96
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.10 E-value=2.7e-06 Score=60.28 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=29.2
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhh--hhCCCC
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLA--AVNKSP 72 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~--~~~g~~ 72 (114)
..+++++|+|++||||||+++.+.+++. +..|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 5689999999999999999999999887 555543
No 97
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.09 E-value=3.1e-06 Score=57.22 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=24.5
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
+.++++++|+||+||||||+++.++..
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 578999999999999999999999843
No 98
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.08 E-value=2.7e-06 Score=55.94 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.++|+|++||||||+++.+++++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999884
No 99
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.08 E-value=2.1e-06 Score=59.99 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
.++|+|+||+||||+++.+++...+..|.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~ 32 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKAS 32 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 47899999999999999999999887664
No 100
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.08 E-value=3.1e-06 Score=62.59 Aligned_cols=39 Identities=21% Similarity=0.419 Sum_probs=31.6
Q ss_pred hhhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 33 YSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 33 ~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
++.+...++++++|+|++||||||+++.+++++.+..|.
T Consensus 159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~ 197 (418)
T 1p9r_A 159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 197 (418)
T ss_dssp HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCE
Confidence 333333568899999999999999999999999776554
No 101
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.07 E-value=5.9e-07 Score=68.86 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i 400 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEE
Confidence 3467899999999999999999999999998877654
No 102
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.05 E-value=4.9e-06 Score=59.80 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=31.4
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
....+++++|+|++|+||||+++.+++++.+.+|..
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v 86 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence 357799999999999999999999999988766643
No 103
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.02 E-value=3.7e-06 Score=56.18 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.8
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
..+++++|+||+|+||||+++.+++.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 45789999999999999999999998754
No 104
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.01 E-value=4.5e-06 Score=55.94 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=26.4
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+|....++.++|+||||+||||+++.+++...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35556789999999999999999999998875
No 105
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.01 E-value=3.2e-06 Score=61.04 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=29.0
Q ss_pred hcC--CcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658 38 TSG--NQVVVISGESGSGKTECTKLVMQYLAAVN 69 (114)
Q Consensus 38 ~~~--~~~i~l~G~sGsGKst~~~~i~~~~~~~~ 69 (114)
+.+ ++.++|+|++||||||+++.+++++.+..
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 456 89999999999999999999999998766
No 106
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.99 E-value=3.1e-06 Score=65.26 Aligned_cols=31 Identities=32% Similarity=0.510 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+++++|+|+|||||||+++++.+++.+..|.
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 4889999999999999999999999888774
No 107
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.99 E-value=2.6e-06 Score=62.95 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=27.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+++|+|+||+||||+++.++++..+..|..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI 100 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAA 100 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceE
Confidence 999999999999999999999988877654
No 108
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.97 E-value=3.4e-06 Score=63.81 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=29.8
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
.+..++.++|+|++||||||+++.+++++.+..|
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g 289 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAK 289 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC
Confidence 3567899999999999999999999999976644
No 109
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.95 E-value=3.8e-06 Score=60.72 Aligned_cols=46 Identities=24% Similarity=0.201 Sum_probs=35.8
Q ss_pred eeeehhhhhhh-chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 25 LFAIGSAAYSA-LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 25 iy~~~~~~~~~-l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
.|.....+... +.+.+||+++|.|++|+||||+++.++++..+..|
T Consensus 54 ~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 54 PFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp EECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred ecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 34434445555 34678999999999999999999999999876644
No 110
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.95 E-value=8.9e-06 Score=53.97 Aligned_cols=34 Identities=38% Similarity=0.360 Sum_probs=28.6
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
...+.+++|+|++||||||+++.+.+.+...++.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~ 52 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS 52 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCe
Confidence 3457899999999999999999999988665443
No 111
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.95 E-value=4.1e-06 Score=62.30 Aligned_cols=41 Identities=24% Similarity=0.214 Sum_probs=33.7
Q ss_pred hhhhhh-chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 30 SAAYSA-LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 30 ~~~~~~-l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
..+... +.+.+||+++|.|+|||||||+++.++++..+..|
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 345544 34678999999999999999999999999877654
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=8.1e-06 Score=54.00 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=24.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
|...++++|+|+|++||||||+++.+.+.+
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345678899999999999999999998765
No 113
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.93 E-value=1.4e-06 Score=70.32 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=32.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+..|++++|+|+|||||||+++++.+++.+..|..
T Consensus 694 l~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I 730 (986)
T 2iw3_A 694 FQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730 (986)
T ss_dssp EEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 4467899999999999999999999999998877654
No 114
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.91 E-value=7.7e-06 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+..++|+|++||||||+++.+.+.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998764
No 115
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.90 E-value=1e-05 Score=52.22 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++++++|+|++||||||+++.+.+.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 347899999999999999999998764
No 116
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.90 E-value=1.2e-05 Score=56.25 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=31.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
+...++++++|+|++|+||||+++.+++.+.+..|
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 34678999999999999999999999999987755
No 117
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.90 E-value=6.9e-06 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
+++++|+|++||||||+++.+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 468999999999999999999873
No 118
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.89 E-value=9.5e-06 Score=61.95 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=29.9
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
....+++++|+|++||||||+++.+.+.+.+..|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 3567899999999999999999999999876554
No 119
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.88 E-value=1.4e-05 Score=53.15 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=29.2
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
..++++++|.|++|+||||+++.+++......+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~ 53 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDP 53 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCC
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCe
Confidence 4578999999999999999999999887765543
No 120
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.87 E-value=3e-06 Score=70.20 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=33.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+++||.++|+|+|||||||+++.+.+++.+..|..
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1136 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEE
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEE
Confidence 4478999999999999999999999999999988754
No 121
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.87 E-value=4.9e-06 Score=58.80 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=28.3
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
...+++++++|+||+||||+++.+++...+..|..
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i 200 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 200 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence 45689999999999999999999999987776643
No 122
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.85 E-value=5e-06 Score=54.45 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
+.++|+|+|||||||+++.+++++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 578999999999999999999999876
No 123
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.82 E-value=3.7e-06 Score=69.50 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=32.8
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|+|||||||+++++.+++.+..|..
T Consensus 411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i 447 (1284)
T 3g5u_A 411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447 (1284)
T ss_dssp EEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 3468899999999999999999999999998877653
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.81 E-value=4.9e-06 Score=56.76 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHH
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
..++++|+|++||||||+++.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999993
No 125
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.81 E-value=1.5e-05 Score=50.81 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=29.0
Q ss_pred hhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 32 AYSALATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 32 ~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
++..+..-+++.++|.|++|+|||++++.+++.+..
T Consensus 27 ~~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 27 LVYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444443227899999999999999999999998865
No 126
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.80 E-value=5.2e-06 Score=68.63 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=32.7
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+.+.+|++++|+|+|||||||+++.+.+++.+..|+.
T Consensus 1054 l~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I 1090 (1284)
T 3g5u_A 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090 (1284)
T ss_dssp EEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 4478899999999999999999999999998876643
No 127
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.80 E-value=9.3e-06 Score=60.25 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=26.2
Q ss_pred chhcCCcE--EEEEcCCCCchHHHHHHHHHHh
Q psy7658 36 LATSGNQV--VVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 36 l~~~~~~~--i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+.+..|++ ++|+|+||+||||+++.+++..
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 44678999 9999999999999999999874
No 128
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.80 E-value=5.9e-06 Score=56.85 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
..+.+|+|+|++||||||+++.+..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999993
No 129
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.79 E-value=1.4e-05 Score=56.55 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=29.0
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS 73 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~ 73 (114)
...+++++++|+||+||||+++.++ .+.+..|...
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~ 196 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVS 196 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccc
Confidence 4568999999999999999999999 7776666543
No 130
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.78 E-value=2e-05 Score=51.04 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLAAVN 69 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~~~~ 69 (114)
.+.+|+|+|||||||+++.|...+....
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~~~ 54 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGGLS 54 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTCCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3899999999999999999998876543
No 131
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.76 E-value=6.2e-06 Score=68.35 Aligned_cols=37 Identities=27% Similarity=0.498 Sum_probs=33.1
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
+...+|+.++|+|++||||||+++.+++++.+..|..
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I 475 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEE
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccccccccCcc
Confidence 4468899999999999999999999999999887754
No 132
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.74 E-value=1.4e-05 Score=58.06 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=28.3
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhh-hhCCC
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLA-AVNKS 71 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~-~~~g~ 71 (114)
..+++++|+|+||+||||+++.+++... +..|.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~ 246 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTND 246 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccccCC
Confidence 4689999999999999999999999887 65553
No 133
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.74 E-value=5.3e-06 Score=59.10 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=24.3
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
..++++++|+|+||+||||+++.+++...+..|.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~ 203 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNE 203 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC--------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccc
Confidence 4578999999999999999999999888766554
No 134
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.74 E-value=2.1e-05 Score=52.13 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+..++|+|++||||||+++.+...+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4578999999999999999999988773
No 135
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.73 E-value=2.7e-05 Score=58.83 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=31.2
Q ss_pred hhhhh--c-hhcCCcEEEEEcCCCCchHHHHHH--HHHHhhhhCC
Q psy7658 31 AAYSA--L-ATSGNQVVVISGESGSGKTECTKL--VMQYLAAVNK 70 (114)
Q Consensus 31 ~~~~~--l-~~~~~~~i~l~G~sGsGKst~~~~--i~~~~~~~~g 70 (114)
.++.. + ...++++++|+|+|||||||+++. +.+...+..|
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g 70 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP 70 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 45544 3 357899999999999999999999 5677775544
No 136
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.70 E-value=3.1e-05 Score=51.76 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...++|+|++||||||+++.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998866
No 137
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.68 E-value=2.2e-05 Score=63.41 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=25.4
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
|.+.+|++++|+|+|||||||+++++.+
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4467899999999999999999999984
No 138
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.68 E-value=1.8e-05 Score=61.46 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.0
Q ss_pred hhhh--chhcCCcEEEEEcCCCCchHHHH
Q psy7658 32 AYSA--LATSGNQVVVISGESGSGKTECT 58 (114)
Q Consensus 32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~ 58 (114)
++.+ |.+.++++++|+|||||||||++
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 4554 44789999999999999999997
No 139
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.67 E-value=1.6e-05 Score=53.83 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=24.4
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
..++++++|.|++||||||+++.+.++
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999999998887
No 140
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.65 E-value=2.7e-05 Score=51.53 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=24.8
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...+.+++|+|++||||||+++.+.+.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457899999999999999999999875
No 141
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.65 E-value=4.3e-05 Score=53.87 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=26.4
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..+.+|+|+|++||||||+++.+.+++...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 347889999999999999999999998753
No 142
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.64 E-value=3.2e-06 Score=57.77 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
++++|+|||||||||++++|.+++.+..|..
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i 58 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence 6788999999999999999999998877654
No 143
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.64 E-value=4.3e-05 Score=49.46 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.++.++|+|++||||||+++.+...+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4788999999999999999999987743
No 144
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.64 E-value=2.8e-05 Score=53.74 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=27.9
Q ss_pred hhhhhc--hhcC---CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 31 AAYSAL--ATSG---NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 31 ~~~~~l--~~~~---~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++..+ .+.+ ++.++|+|++||||||+++.+.+.+
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 344443 3556 8999999999999999999998844
No 145
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.63 E-value=4.4e-05 Score=49.11 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+.+|+|+|++||||||+.+.+...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999988754
No 146
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.63 E-value=3.9e-05 Score=54.96 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=23.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+++|+|++||||||+++.+.+++..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999998864
No 147
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.61 E-value=6e-05 Score=53.56 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=29.2
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~ 72 (114)
..+++++++|++|+||||++..+++.+...++..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV 135 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV 135 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE
Confidence 4578999999999999999999999998765543
No 148
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.60 E-value=5.4e-05 Score=48.22 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.|+|+|++||||||+++.+...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999887753
No 149
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.59 E-value=1.2e-05 Score=53.02 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=27.8
Q ss_pred hhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 32 AYSALATSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 32 ~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+..+....+..++|+|++|+||||+++.+++..
T Consensus 17 ~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 17 DIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4444667788999999999999999999887765
No 150
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.59 E-value=4.3e-05 Score=55.81 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=25.7
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...+++++|.|++|+||||+++.+.+.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5678999999999999999999999875
No 151
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.58 E-value=2e-05 Score=61.16 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.5
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~ 62 (114)
|.+.++++++|+|+|||||||+++.++
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 446789999999999999999997654
No 152
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.58 E-value=3.3e-05 Score=54.93 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
++++|+|++||||||+++.+++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 578999999999999999999875
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.55 E-value=8.3e-05 Score=52.51 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
.+++++++|++|+||||++..+++.+....|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999987555
No 154
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.55 E-value=5.5e-05 Score=49.87 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..+|+|+|++||||||+++.+.+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998775
No 155
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.54 E-value=0.0001 Score=47.96 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..+..|++.|.+||||||+++.+...+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 457889999999999999999999887643
No 156
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.54 E-value=9e-05 Score=51.63 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.-++|.||+|+||||+++.+++.+..
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCC
Confidence 33999999999999999999998653
No 157
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.53 E-value=6e-05 Score=49.95 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..|+|+||||+||+|+++.++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999988764
No 158
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.51 E-value=8.8e-05 Score=49.34 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=26.7
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
....+.+++|.|++||||||+++.+.+.+.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356688999999999999999999998876
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.50 E-value=9.5e-05 Score=48.22 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=24.2
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
|....+..|+|+|++||||||+++.+...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33445678999999999999999998887
No 160
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.48 E-value=8.6e-05 Score=49.84 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=24.7
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
...+++++|.|++|+||||+++.++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999999884
No 161
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.48 E-value=0.0001 Score=47.69 Aligned_cols=26 Identities=42% Similarity=0.696 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+..|+|.|++||||||+++.+...+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999887654
No 162
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.48 E-value=0.00012 Score=52.23 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=29.4
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
..++++++++|++|+||||++..++..+...+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~k 135 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYK 135 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 4567899999999999999999999999876554
No 163
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.47 E-value=8.5e-05 Score=48.09 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+..|+++|++||||||+++.+...+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999988654
No 164
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.47 E-value=0.00013 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..++|.||+|+||||+++.+.+.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999998764
No 165
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.45 E-value=0.00011 Score=48.56 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=23.9
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
...+++++|.|++|+||||+++.++.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999887
No 166
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.45 E-value=8e-05 Score=49.15 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
+++|+|++||||||+++.+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 167
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.42 E-value=0.0001 Score=48.50 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.|+|+|++||||||+++.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 168
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.41 E-value=0.00013 Score=50.64 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=25.9
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...+++++|.|++|+||||+++.++..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999999988665
No 169
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.41 E-value=0.00013 Score=47.29 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+..|+|+|++||||||+++.+...+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999988765
No 170
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.41 E-value=3.2e-05 Score=56.33 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=24.8
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..++ +++|+|+||+||||+++.|..++.
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567 999999999999999999987775
No 171
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.40 E-value=9e-05 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+.+++.||+|+||||+++.+++.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 789999999999999999999988
No 172
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.40 E-value=0.00014 Score=46.45 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
|.|+|.|..||||||..+.+...+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 889999999999999999988764
No 173
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.39 E-value=0.00017 Score=47.26 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..++|+|++|+||||+++.+++.+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 578999999999999999999887643
No 174
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.39 E-value=0.00015 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...|+++|++||||||+.+.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999988765
No 175
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.39 E-value=0.00015 Score=46.82 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.....|+|+|++|+||||+++.+...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999988665
No 176
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.38 E-value=0.00019 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.-++|.||+|+||||+++.+.+.+.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCcChHHHHHHHHHHHcC
Confidence 3489999999999999999998764
No 177
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.37 E-value=4.6e-05 Score=58.70 Aligned_cols=29 Identities=14% Similarity=0.207 Sum_probs=21.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhh-hCCC
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAA-VNKS 71 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~-~~g~ 71 (114)
.++|+|++||||||+++.+++++.+ ..|.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~ 76 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGI 76 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCe
Confidence 3899999999999999999999866 4553
No 178
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.37 E-value=0.00016 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.417 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.|+|.|++||||||+++.+...+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998653
No 179
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.35 E-value=0.00013 Score=46.21 Aligned_cols=20 Identities=50% Similarity=0.880 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCchHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLV 61 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i 61 (114)
.+|+|+|++||||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999988
No 180
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.34 E-value=0.00019 Score=47.27 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+..|+|+|.+||||||+++.+...+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987654
No 181
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.33 E-value=0.00019 Score=56.74 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh-hhCC
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA-AVNK 70 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~-~~~g 70 (114)
+++++|+||||+||||+++.+++... +..|
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G 606 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVG 606 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTT
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccC
Confidence 89999999999999999999998764 3444
No 182
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.33 E-value=0.00017 Score=51.99 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=26.2
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...++++.|.|++|+||||+++.++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999999987
No 183
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.32 E-value=0.00021 Score=46.40 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+..|+|.|++||||||.++.+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999988755
No 184
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.32 E-value=0.00022 Score=46.96 Aligned_cols=27 Identities=33% Similarity=0.594 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.+..|+|+|.+||||||+++.+...+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999987653
No 185
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.31 E-value=0.00018 Score=46.45 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.|+|.|++||||||+++.+...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988765
No 186
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.31 E-value=0.00017 Score=57.31 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=24.5
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++++++|+||||+||||++|.+++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 468999999999999999999998864
No 187
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.29 E-value=0.00022 Score=46.03 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...|+|+|++||||||.++.+...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999887754
No 188
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.28 E-value=0.0002 Score=50.23 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+..++|+|++||||||+++.+...+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999987755
No 189
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.28 E-value=0.00019 Score=49.32 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++|+|++||||||+.+.++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68899999999999999988765
No 190
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.28 E-value=0.00028 Score=49.70 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
.+++++++|++|+||||++..+++.+...++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~ 128 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR 128 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 67899999999999999999999999876554
No 191
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.28 E-value=0.00023 Score=46.73 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+..|+|.|++||||||+++.+...+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999999887643
No 192
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.28 E-value=0.0002 Score=45.84 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
.+|++.|++||||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999887
No 193
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.27 E-value=0.00019 Score=46.81 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.++|+|++|+||||+++.+.+...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 588999999999999999988654
No 194
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.27 E-value=9.3e-05 Score=48.88 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.|+|.|++||||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988753
No 195
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.27 E-value=0.00021 Score=46.75 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+..|+|.|+.||||||.++.+...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998876
No 196
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.27 E-value=0.0002 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.|+|+|++||||||+++.+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999988765
No 197
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.27 E-value=0.00014 Score=58.50 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.6
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
..++++++|+||||+||||+++.+...
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 456899999999999999999987654
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.26 E-value=0.0003 Score=50.62 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
...++|+|++|+||||+++.+++.+....+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~ 103 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGH 103 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCC
Confidence 678999999999999999999998765443
No 199
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.24 E-value=0.0003 Score=47.93 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...++|.||+|+|||++++.+.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999988764
No 200
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.23 E-value=0.00028 Score=45.96 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+..|+|+|++||||||+++.+...+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999988765
No 201
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.23 E-value=0.00024 Score=46.44 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++++|++|+||||+++.+.+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998864
No 202
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.22 E-value=0.00028 Score=45.62 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+..|+|.|++||||||+++.+...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999887654
No 203
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.22 E-value=0.00033 Score=49.14 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=24.5
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...+..++|.||+|+|||++++.+...+
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 3557889999999999999999998865
No 204
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.20 E-value=0.0003 Score=45.75 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.|+|.|+.||||||.++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 205
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.20 E-value=0.00045 Score=43.99 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.....++|.|++|+|||++++.++..+..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999887743
No 206
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.20 E-value=0.00032 Score=52.98 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=28.1
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..++++++|.|++|+||||+++.+++...+.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 5679999999999999999999999988764
No 207
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.18 E-value=0.00021 Score=48.96 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+..++++|++||||||+++.+...+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3467899999999999999999988764
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.18 E-value=0.0004 Score=49.34 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=25.0
Q ss_pred hcCCcE--EEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQV--VVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~--i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
...++. +++.||+|+||||+++.+++.+..
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 345555 999999999999999999998753
No 209
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.17 E-value=0.00034 Score=47.45 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=26.1
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
..+..|+|.|++||||||.++.+...+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 36889999999999999999999998864
No 210
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.17 E-value=0.00031 Score=51.69 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=26.3
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVN 69 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~ 69 (114)
...+++++|+|+||+||||++..+...+...+
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 34578999999999999999999998886543
No 211
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.17 E-value=0.00016 Score=51.09 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHH-hhhhCC
Q psy7658 43 VVVISGESGSGKTECTKLVMQY-LAAVNK 70 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~-~~~~~g 70 (114)
.++|+|++|+||||+++.+.+. +.+..|
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC--------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 3589999999999999998876 544443
No 212
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.17 E-value=0.00045 Score=46.30 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=24.3
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
...+++++|.|++|+||||++..++.....
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999997766555443
No 213
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.16 E-value=0.00042 Score=45.24 Aligned_cols=27 Identities=22% Similarity=0.115 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
.+++|+|++|+||||++..++..+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 478999999999999999999887643
No 214
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.16 E-value=0.00033 Score=45.72 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
..+|+|+|++||||||+++.+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 467999999999999999988764
No 215
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.15 E-value=0.0004 Score=46.31 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+..|+|.|+.||||||.++.+...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999988765
No 216
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.15 E-value=0.00035 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.|+|+|++||||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887654
No 217
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.15 E-value=0.00041 Score=46.85 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..+.+|+|+|++||||||+++.+.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999988754
No 218
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.15 E-value=0.00032 Score=45.31 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+|+|+|++||||||+.+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999888754
No 219
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.15 E-value=0.00044 Score=45.42 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..+..|+|+|+.||||||+++.+...+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999988765
No 220
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.14 E-value=0.00054 Score=49.05 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=28.2
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
...+.+++++|++|+||||+++.+++.+...++
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~ 85 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL 85 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 456889999999999999999999988865443
No 221
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.13 E-value=0.00035 Score=44.56 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..|+|.|++||||||+++.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999988764
No 222
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.13 E-value=0.00027 Score=45.47 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=18.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+..|+|.|.+||||||.++.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999987654
No 223
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.12 E-value=0.0004 Score=45.49 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=21.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+|+|.|++||||||+++.+...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999998865
No 224
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.12 E-value=0.00041 Score=44.86 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.|+|.|..||||||.++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998866
No 225
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.11 E-value=0.00034 Score=56.45 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.9
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLV 61 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i 61 (114)
...+++++|+||||+||||+++.+
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHH
Confidence 456899999999999999999988
No 226
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.11 E-value=0.0004 Score=47.54 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..+++|.|++||||||+++.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 227
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.10 E-value=0.00041 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
+.+|+|+|++||||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 228
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.10 E-value=0.00041 Score=46.29 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...|+|.|++||||||.++.+...+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999887653
No 229
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.09 E-value=0.00041 Score=46.01 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.|+|+|++||||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999887654
No 230
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.09 E-value=0.00037 Score=56.69 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+++++|+||||+||||++|.+ +++..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHH
Confidence 699999999999999999999 77754
No 231
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.08 E-value=0.00048 Score=43.75 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.|+|.|.+||||||.++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988754
No 232
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.08 E-value=0.00044 Score=46.36 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....|+|.|++||||||+++.+...+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999888654
No 233
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.06 E-value=0.00038 Score=50.37 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=22.9
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...+ ..+|+|+|||||||++..|...+.
T Consensus 21 ~~~g-~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444 788999999999999998886653
No 234
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.05 E-value=0.00054 Score=44.94 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....|+|+|++||||||.++.+...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999887654
No 235
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.05 E-value=0.0004 Score=50.37 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=23.6
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..++ +.+|+|+||+||||++..+.....
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~~~~ 51 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYLALT 51 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHHhcc
Confidence 3455 999999999999999999987653
No 236
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.04 E-value=0.00063 Score=45.15 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.+..++|.|++|+|||++++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999887654
No 237
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.04 E-value=0.00043 Score=54.93 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=25.3
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...+..++|.||+|+|||++++.+.+.+.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 45678899999999999999999988753
No 238
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.04 E-value=0.00054 Score=43.62 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.....++|.|++|+|||++++.+...+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44678899999999999999999887744
No 239
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.02 E-value=0.00083 Score=43.98 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..++|.|++|+|||++++.+...+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999877643
No 240
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.01 E-value=0.0007 Score=46.60 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.....++|.|++|+|||++++.+...+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4567899999999999999999987763
No 241
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.01 E-value=0.00061 Score=46.43 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....|+|+|++||||||.++.+...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999988654
No 242
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.01 E-value=0.00064 Score=43.15 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....+|+|++|+|||+++..+.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999887554
No 243
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.00 E-value=0.00046 Score=44.21 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
++..++++|++|+||||+++.+.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998875
No 244
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.00 E-value=0.00056 Score=46.70 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+|+|+|++||||||+++.+...+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999888553
No 245
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.98 E-value=0.0006 Score=51.78 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
.+..+++.||+|+||||+++.+.+.+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 57899999999999999999999988543
No 246
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.96 E-value=0.00027 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 44 VVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 44 i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
++|+|++|+||||+++.+++...+
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 699999999999999999987653
No 247
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.96 E-value=0.0005 Score=48.72 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=22.5
Q ss_pred EEEEcCCCCchHHHHHHHHH-HhhhhCC
Q psy7658 44 VVISGESGSGKTECTKLVMQ-YLAAVNK 70 (114)
Q Consensus 44 i~l~G~sGsGKst~~~~i~~-~~~~~~g 70 (114)
+++.||+|+||||+++.+++ ++.+..|
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g 66 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVY 66 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 89999999999999999999 4444433
No 248
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.95 E-value=0.00039 Score=48.87 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+|+|+|++||||||+++.+...+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999887654
No 249
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.91 E-value=0.0008 Score=44.56 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..+|+|+|.+||||||..+.+...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999988763
No 250
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.90 E-value=0.00083 Score=48.79 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=24.6
Q ss_pred hcCCcE--EEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQV--VVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~--i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
...++. ++|+|++|+||||+.+.+.+.+..
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 345556 999999999999999998887643
No 251
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.90 E-value=0.00051 Score=48.71 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.2
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++ +.+|+|+||+|||+++..+...+
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 344 99999999999999999988654
No 252
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.89 E-value=0.00063 Score=43.10 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.++++|++|+||||+++.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999988764
No 253
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.88 E-value=0.00068 Score=49.83 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.0
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~ 62 (114)
...++++.|.|++|+||||+++.++
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 4579999999999999999999654
No 254
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.88 E-value=0.00088 Score=46.04 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...|+++|.+||||||+++.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999988643
No 255
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.87 E-value=0.00086 Score=44.97 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.|+|.|++||||||.++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999988764
No 256
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.87 E-value=0.00085 Score=44.53 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.|+|.|++||||||.++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999988754
No 257
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.87 E-value=0.00097 Score=45.11 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.0
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.....+|+|.|++||||+|.++.+...+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999988765
No 258
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.87 E-value=0.00026 Score=56.50 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=25.6
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHH-HHHHhh
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKL-VMQYLA 66 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~-i~~~~~ 66 (114)
.+..|++++|+|+|||||||+++. +.+.+.
T Consensus 519 ~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~ 549 (842)
T 2vf7_A 519 RFPLGVMTSVTGVSGSGKSTLVSQALVDALA 549 (842)
T ss_dssp EEESSSEEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred EEcCCCEEEEEcCCCcCHHHHHHHHHHHHHH
Confidence 367899999999999999999996 666653
No 259
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.87 E-value=0.00095 Score=44.49 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+..|+|.|+.||||||.++.+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999988765
No 260
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.86 E-value=0.0011 Score=44.98 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.....++|.||+|+|||++++.+...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999998865
No 261
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.85 E-value=0.0006 Score=52.34 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=27.6
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
...++.++|.||+|+||||+++.+.+.+...
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 5678999999999999999999999988644
No 262
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.85 E-value=0.001 Score=46.05 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
....++|.||+|+|||++++.+...+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999988763
No 263
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.84 E-value=0.00036 Score=56.52 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.3
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~ 62 (114)
.+..|++++|+|+|||||||+++.++
T Consensus 664 ~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 664 SFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 36789999999999999999999854
No 264
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.82 E-value=0.00094 Score=46.40 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
...+++.||+|+|||++++.+...+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 357999999999999999999998743
No 265
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.81 E-value=0.00096 Score=48.95 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=24.3
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
...+..++|+|++|+||||+++.+.+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 456889999999999999999999983
No 266
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.80 E-value=0.00055 Score=44.15 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++|+|++|+||||+++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988763
No 267
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.80 E-value=0.0013 Score=47.74 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=27.9
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
...++++.|.|++|+||||++..++.......+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg 90 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGG 90 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 356899999999999999999999888765544
No 268
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.79 E-value=0.0012 Score=48.89 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
.+++++++|++|+||||++..++.++...++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~ 128 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR 128 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 57889999999999999999999999876544
No 269
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.79 E-value=0.0012 Score=46.55 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
+++++++|++|+||||++..++..+...++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~ 128 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFK 128 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 7899999999999999999999998765443
No 270
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.79 E-value=0.001 Score=47.96 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.+|+|+|++||||||+++.+...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999888764
No 271
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.77 E-value=0.0014 Score=44.17 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....|+|.|+.||||||.++.+...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999988765
No 272
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.77 E-value=0.0012 Score=44.23 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+|++.|++||||+|.++.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988776
No 273
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.77 E-value=0.00095 Score=42.77 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.++++|++|+||||+++.+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999988863
No 274
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.75 E-value=0.0016 Score=49.60 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=32.2
Q ss_pred CCCCCeeee---ehhhhhhhc--hhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 19 GTLSPHLFA---IGSAAYSAL--ATSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 19 ~~~~phiy~---~~~~~~~~l--~~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+..+|+-|. ++......+ ..+.+..|+++|.+||||||+++.+...+.
T Consensus 345 g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 345 GRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 344566665 332222223 123467899999999999999999888664
No 275
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.75 E-value=0.0011 Score=46.94 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
.+..++|.|++|+|||++++.+.+.+...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999877554
No 276
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.74 E-value=0.0013 Score=43.70 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
..+.+|+|++|+||||++..|.-.+..
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 468899999999999999988766553
No 277
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.74 E-value=0.0014 Score=42.98 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
..++|.|++|+|||++++.+...+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 48999999999999999999887643
No 278
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.73 E-value=0.0012 Score=49.02 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~ 71 (114)
.+.+++++|++|+||||++..++.++...+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~k 127 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYK 127 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 36789999999999999999999988765443
No 279
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.72 E-value=0.0012 Score=46.46 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
...++|.||+|+|||++++.+...+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4689999999999999999999887544
No 280
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.70 E-value=0.0013 Score=45.92 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
..+|+|+|++||||||+++.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 281
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.69 E-value=0.00037 Score=56.34 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.3
Q ss_pred hhcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658 37 ATSGNQVVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 37 ~~~~~~~i~l~G~sGsGKst~~~~i~ 62 (114)
.+..|++++|+|+|||||||+++.++
T Consensus 646 ~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 646 KIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 36789999999999999999999854
No 282
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.68 E-value=0.0018 Score=43.48 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.+..|++.|+.||||||.++.+...+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999888753
No 283
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.66 E-value=0.00044 Score=51.11 Aligned_cols=30 Identities=17% Similarity=0.049 Sum_probs=26.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
+..+.++.++|+|++|+||||+++.+.+..
T Consensus 152 lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 152 LELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 456778899999999999999999988763
No 284
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.66 E-value=0.0011 Score=47.70 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.+..|+|+||+|+|||++...++..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 346899999999999999999988774
No 285
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.64 E-value=0.0013 Score=48.41 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....+|+++|++||||||+++.+...+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346889999999999999999887654
No 286
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.64 E-value=0.0017 Score=40.67 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..+..+.|.||+|+|||++++.+....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 346779999999999999999988764
No 287
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.64 E-value=0.0014 Score=45.53 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
..|+|+|++||||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998874
No 288
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.64 E-value=0.0018 Score=46.07 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=24.3
Q ss_pred CCc--EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 40 GNQ--VVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 40 ~~~--~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.+. .++|.|++|+|||++++.+.+.+..
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 346 8999999999999999999988754
No 289
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.0016 Score=43.96 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=21.2
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
..++.++++|++|||||+.+..++-.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 45789999999999999987765443
No 290
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.62 E-value=0.0015 Score=46.76 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..++|+|++|+||||+.+.+...+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988763
No 291
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.60 E-value=0.0023 Score=43.73 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=25.6
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..+..|++.|++||||||.++.+...+...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 347899999999999999999998887643
No 292
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.60 E-value=0.0014 Score=44.16 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
-.|+|+|++|+||||+++.+++...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc
Confidence 4589999999999999999887544
No 293
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.60 E-value=0.0021 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.-++|.||+|+|||++++.+.+.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4489999999999999999998763
No 294
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.59 E-value=0.0016 Score=40.60 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|++|+||||+++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999988764
No 295
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.59 E-value=0.0021 Score=43.59 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=26.0
Q ss_pred chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+....+..|++.|..||||||.++.+...+..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34456889999999999999999999888765
No 296
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.59 E-value=0.00083 Score=45.87 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...++|.||+|+|||++++.+...+.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 45588999999999999999988653
No 297
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.59 E-value=0.0016 Score=46.61 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...++|+||+|+|||++...++..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35789999999999999999887664
No 298
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.58 E-value=0.0021 Score=44.64 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.+..++|.||+|+|||++++.+...+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3557999999999999999998887754
No 299
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.58 E-value=0.0017 Score=44.16 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..+..|++.|+.||||||.++.+...+...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 357899999999999999999998887543
No 300
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.57 E-value=0.0026 Score=42.80 Aligned_cols=28 Identities=32% Similarity=0.586 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
+..|++.|+.||||||.++.+...+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 6789999999999999999999888654
No 301
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.56 E-value=0.002 Score=46.00 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...+.+|+||||+|||+++..|.-.+
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999875433
No 302
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.54 E-value=0.0019 Score=46.14 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...++|+||+|+|||++...++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46789999999999999999988764
No 303
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.54 E-value=0.0026 Score=46.05 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAAVN 69 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~ 69 (114)
.+..++|+|++|+|||++++.++..+...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~ 63 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG 63 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 567789999999999999999888775443
No 304
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.53 E-value=0.002 Score=43.52 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+..|++.|..||||||+++.+...+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998873
No 305
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.53 E-value=0.002 Score=42.63 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+++|+|++||||||+++.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999888764
No 306
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.53 E-value=0.0019 Score=40.07 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|+.|+|||++++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 307
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.52 E-value=0.0019 Score=40.03 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|..|+||||+++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999987754
No 308
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.52 E-value=0.0018 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.9
Q ss_pred chhcCCcEEEEEcCCCCchHHHHH
Q psy7658 36 LATSGNQVVVISGESGSGKTECTK 59 (114)
Q Consensus 36 l~~~~~~~i~l~G~sGsGKst~~~ 59 (114)
+.+..+++++|+|+|||||||++.
T Consensus 605 l~I~~Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 605 VEIPLGVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp EEEESSSEEEEECSTTSSHHHHHH
T ss_pred eEEcCCcEEEEEccCCCChhhhHH
Confidence 336789999999999999999973
No 309
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.52 E-value=0.0029 Score=41.12 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..++|.|+.|+|||++++.+...+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999988765
No 310
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0021 Score=41.34 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.++++|++|+|||++++.+.+.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999988764
No 311
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.50 E-value=0.002 Score=39.99 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|++|+|||++++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999987765
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.48 E-value=0.0021 Score=39.93 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|..|+|||++++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999987753
No 313
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.47 E-value=0.0028 Score=42.80 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.+..|++.|+.|+||||.++.+...+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4789999999999999999999998864
No 314
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0028 Score=46.99 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=24.6
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.....-+++.||+|+|||.+++.+++.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34566799999999999999999998763
No 315
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.47 E-value=0.0022 Score=40.10 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++++|+.|+|||++++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999877643
No 316
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.47 E-value=0.0022 Score=40.00 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|+.|+|||++++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887754
No 317
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.46 E-value=0.0027 Score=44.35 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....+++.||+|+|||++++.++..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678889999999999999999876
No 318
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.45 E-value=0.0022 Score=40.53 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.++++|++|+|||++++.+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999887763
No 319
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.45 E-value=0.0028 Score=48.54 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.+.+|.|+|.+||||||+++.+...+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4568999999999999999999887653
No 320
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.45 E-value=0.0022 Score=40.11 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|++|+|||++++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999998775
No 321
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.45 E-value=0.0025 Score=45.28 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+..++|.||+|+|||++++.+...+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998875
No 322
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.45 E-value=0.0025 Score=44.01 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....+++.||+|+|||++++.+...+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998876
No 323
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.45 E-value=0.0033 Score=45.25 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=25.1
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..++++.|.|++|+||||++..++......
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999988877665543
No 324
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.44 E-value=0.0021 Score=43.23 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=22.3
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..+..++|+|++|+|||+++..++...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 357889999999999999988776643
No 325
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.44 E-value=0.0028 Score=46.82 Aligned_cols=30 Identities=23% Similarity=0.158 Sum_probs=27.0
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
..+||.++|.|++|+|||++++.+.+....
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 567999999999999999999999887754
No 326
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.44 E-value=0.0023 Score=40.05 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|++|+|||++++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999887754
No 327
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.43 E-value=0.0024 Score=39.81 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|.+|+|||++++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998775
No 328
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.43 E-value=0.0023 Score=40.38 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|++|+|||++++.+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998765
No 329
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.42 E-value=0.0034 Score=47.13 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...++|.||+|+|||++++.+.+..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4569999999999999999998865
No 330
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.42 E-value=0.0023 Score=40.41 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|..|+|||++++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999987764
No 331
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.41 E-value=0.0021 Score=40.17 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|..|+|||++++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998775
No 332
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.41 E-value=0.002 Score=45.25 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...++|+|++|+||||+++.+++.-
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3579999999999999999998764
No 333
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0033 Score=46.72 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=24.9
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.....-+++.||+|+|||.+++.++..+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 44567899999999999999999998763
No 334
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.39 E-value=0.0029 Score=40.95 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=21.0
Q ss_pred hhchhcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 34 SALATSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 34 ~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
+.|.....-.|+++|..|+|||++++.+.+-
T Consensus 21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred hccCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 3444444556899999999999999887753
No 335
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0034 Score=46.65 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=24.7
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.....-+.+.||+|+|||.+++.+++.+.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 34567799999999999999999998763
No 336
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.39 E-value=0.0023 Score=45.35 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
.....++|.||+|+|||++++.+...+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999887743
No 337
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.39 E-value=0.0022 Score=41.16 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.|+++|..|+||||+++.+.+-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999988754
No 338
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.37 E-value=0.0021 Score=40.47 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|++|+|||++++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4889999999999999987653
No 339
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.36 E-value=0.0028 Score=39.53 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|..|+|||++++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999988775
No 340
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.36 E-value=0.0028 Score=46.75 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.+|+|+||+|+|||+++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999887764
No 341
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.35 E-value=0.0021 Score=41.13 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.++++|.+|+||||+++.+++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999988765
No 342
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.35 E-value=0.0029 Score=45.31 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....+++.||+|+|||++++.+...+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999998865
No 343
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.34 E-value=0.0032 Score=41.52 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.7
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
.-.+..+++.|+||+||||++..++.
T Consensus 13 ~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34578899999999999999876665
No 344
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.33 E-value=0.0029 Score=40.36 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.|+++|..|+|||++++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998775
No 345
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.32 E-value=0.0029 Score=40.74 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.|+++|.+|+|||++++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999987763
No 346
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.32 E-value=0.0029 Score=40.26 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|++|+||||+++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988753
No 347
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.30 E-value=0.0034 Score=43.01 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....++|.||+|+|||++++.+...+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45679999999999999999988864
No 348
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.30 E-value=0.0029 Score=46.76 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
...++|.|++|+|||++++.+...+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4679999999999999999999887544
No 349
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.30 E-value=0.0039 Score=44.20 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...++|.||+|+|||++++.++..+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4679999999999999999999876
No 350
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.29 E-value=0.0038 Score=40.13 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
..-.++++|.+|+||||+++.+++-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3466899999999999999988753
No 351
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0037 Score=46.05 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=24.6
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.....-+.+.||+|+|||.+++.+++.+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 34456799999999999999999998764
No 352
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.28 E-value=0.0033 Score=39.18 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|.+|+|||++++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999987653
No 353
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.28 E-value=0.0031 Score=39.74 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|+.|+|||++++.+++
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999998774
No 354
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.28 E-value=0.0032 Score=39.39 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
-.++++|.+|+|||++++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999998764
No 355
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.28 E-value=0.0052 Score=45.53 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=28.4
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
..+++.++|.|++|+|||+++..++.......|
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g 232 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTN 232 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence 467999999999999999999998888776544
No 356
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.28 E-value=0.0025 Score=39.89 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|.+|+|||++++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998763
No 357
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.27 E-value=0.0026 Score=43.77 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.++++|++|+||||+++.+.+...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 588999999999999999887643
No 358
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.27 E-value=0.0033 Score=39.60 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|..|+|||++++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999987754
No 359
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.27 E-value=0.0033 Score=39.90 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.|+++|+.|+|||++++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35889999999999999987753
No 360
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.27 E-value=0.0052 Score=45.65 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
-..++|.||+|+|||++++.+...+..
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 356999999999999999999988743
No 361
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.26 E-value=0.004 Score=39.86 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.|+++|+.|+|||++++.+++-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999988765
No 362
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.25 E-value=0.0044 Score=43.71 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+..+.|.|++|+|||++++.+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999988776
No 363
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.25 E-value=0.0034 Score=39.68 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|.+|+|||++++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999987654
No 364
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.25 E-value=0.0032 Score=40.99 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=21.2
Q ss_pred hchhcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 35 ALATSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.|.....-.|+++|..|+|||++++.+.+-
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 344444456899999999999999988764
No 365
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.24 E-value=0.0044 Score=43.73 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...++|.||+|+|||++++.+...+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4679999999999999999998765
No 366
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.24 E-value=0.0034 Score=40.49 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
-.++++|.+|+|||++++.+++
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999987665
No 367
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.23 E-value=0.0035 Score=39.68 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|..|+|||++++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999887753
No 368
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.22 E-value=0.0034 Score=39.96 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|+.|+|||++++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999987653
No 369
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.22 E-value=0.0026 Score=40.61 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|.+|+|||++++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999987764
No 370
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.22 E-value=0.0041 Score=39.25 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
.-.++++|.+|+|||++++.+.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45688999999999999998765
No 371
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.22 E-value=0.0049 Score=40.63 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..-..++++|.+|+||||++..++..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999888764
No 372
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.21 E-value=0.0034 Score=39.64 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|.+|+|||++++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999987753
No 373
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.20 E-value=0.0036 Score=41.15 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.-.++++|++|+|||++++.+.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999887654
No 374
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.20 E-value=0.0036 Score=44.02 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+++.||+|+|||++++.+.+.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999998864
No 375
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.20 E-value=0.0037 Score=40.48 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.|+++|..|+||||+++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999887753
No 376
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.19 E-value=0.0036 Score=40.54 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
.-.++++|++|+|||++++.+.+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998775
No 377
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.19 E-value=0.0048 Score=44.26 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....++|.||+|+|||++++.+...+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998865
No 378
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.18 E-value=0.0034 Score=42.77 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.-.|+|+|.+|+||||+++.+++.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 456899999999999999988764
No 379
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.18 E-value=0.004 Score=44.69 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...+++.||+|+|||++++.+...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998876
No 380
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.17 E-value=0.0039 Score=40.02 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.|+++|+.|+|||++++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999988763
No 381
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.17 E-value=0.0033 Score=39.22 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|.+|+|||++++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999987754
No 382
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.17 E-value=0.0036 Score=45.15 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHH
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
.....+|+|+||+|||+++..|.-
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999998765
No 383
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.16 E-value=0.004 Score=39.60 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|..|+|||++++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999987753
No 384
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.16 E-value=0.0022 Score=40.49 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.|+++|.+|+|||++++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999987764
No 385
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.16 E-value=0.004 Score=39.84 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
-.++++|.+|+|||++++.+.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3588999999999999987766543
No 386
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.16 E-value=0.0049 Score=43.87 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
...++|.|++|+|||++++.+...+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999887643
No 387
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.15 E-value=0.004 Score=40.40 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|..|+||||+++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999988764
No 388
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.14 E-value=0.004 Score=39.88 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|++|+|||++++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999987763
No 389
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0039 Score=40.24 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.|+++|..|+|||++++.+.+-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999987753
No 390
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.13 E-value=0.0042 Score=39.87 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|..|+|||++++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999987754
No 391
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.12 E-value=0.0017 Score=44.47 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..+..|+|.|..||||||.++.+...+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999888776
No 392
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0049 Score=46.19 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=25.0
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.....-+++.||+|+|||.+++.+++.+.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 45677899999999999999999998653
No 393
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.12 E-value=0.0043 Score=39.33 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|.+|+|||++++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999987764
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.12 E-value=0.0043 Score=39.86 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
-.|+++|.+|+|||++++.+.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3588999999999999998765
No 395
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0041 Score=40.03 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
-.|+++|.+|+||||+++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4588999999999999998876
No 396
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.11 E-value=0.0032 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++|+|++|+||||+++.+++..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999998764
No 397
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.11 E-value=0.0038 Score=42.58 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.+..+.|.|++|+|||++++.+.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 467799999999999999999987654
No 398
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.10 E-value=0.0044 Score=39.90 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|..|+|||++++.+.+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 488999999999999988775
No 399
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.08 E-value=0.0039 Score=42.40 Aligned_cols=25 Identities=16% Similarity=0.478 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.-.|+|+|.+|+||||+++.+++.-
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999887643
No 400
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.07 E-value=0.0046 Score=43.54 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...++|.||+|+|||++++.+...+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998765
No 401
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.07 E-value=0.0056 Score=40.81 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
+..|++-|.-||||||.++.+...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46799999999999999999998884
No 402
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.07 E-value=0.0045 Score=39.26 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
-.++++|.+|+|||++++.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3588999999999999988774
No 403
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.0046 Score=39.84 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.|+++|..|+|||++++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48899999999999999887643
No 404
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.05 E-value=0.0053 Score=44.07 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...++|.||+|+|||++++.++..+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 45689999999999999999988763
No 405
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.04 E-value=0.0059 Score=39.54 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=20.6
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~ 62 (114)
....-.++++|+.|+|||++++.+.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHH
Confidence 3445669999999999999998765
No 406
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.04 E-value=0.0049 Score=40.01 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
.-.|+++|+.|+|||++++.+.+
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHh
Confidence 45689999999999999998765
No 407
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0071 Score=44.96 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=24.8
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.....-+.+.||+|+|||.+++.+++.+.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 44567799999999999999999998764
No 408
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.0051 Score=39.38 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.|+++|+.|+|||++++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999988754
No 409
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.02 E-value=0.0051 Score=39.55 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.|+++|..|+|||++++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999988753
No 410
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.01 E-value=0.0051 Score=39.96 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|.+|+|||++++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999998775
No 411
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.01 E-value=0.0044 Score=40.18 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|..|+|||++++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887653
No 412
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.01 E-value=0.0049 Score=40.11 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.|+++|.+|+|||++++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887653
No 413
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0049 Score=40.49 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|.+|+|||++++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999987653
No 414
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.005 Score=43.92 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=26.3
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
...+..+.|.|++|+|||++++.++..+..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456788999999999999999999998854
No 415
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.00 E-value=0.0065 Score=45.00 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLAAVNK 70 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~~~~g 70 (114)
..++|.|+.|+|||+++..++..+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 49999999999999999999888865543
No 416
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.00 E-value=0.0039 Score=45.16 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.++|+|++|+||||+++.+.+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 388999999999999999887543
No 417
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.00 E-value=0.0023 Score=39.97 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=22.0
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..+..+.|.||+|+|||++++.+....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 346679999999999999998776543
No 418
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.00 E-value=0.006 Score=40.31 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....++++|.+|+||||++..++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999888764
No 419
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.99 E-value=0.007 Score=38.26 Aligned_cols=23 Identities=22% Similarity=0.076 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
.-.++++|..|+|||++++.+.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34588999999999999987765
No 420
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.99 E-value=0.007 Score=45.49 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.....++|.||+|+|||++++.+...+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 345679999999999999999987764
No 421
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.98 E-value=0.0054 Score=39.52 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.++++|.+|+|||++++.+.+-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999987764
No 422
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.97 E-value=0.0045 Score=44.38 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.|+|+|.+|+||||+++.+.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 788999999999999999998
No 423
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.96 E-value=0.0055 Score=39.46 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.|+++|..|+|||++++.+.+-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35889999999999999877653
No 424
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.96 E-value=0.0046 Score=39.63 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.-.++++|++|+|||++++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999887653
No 425
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.95 E-value=0.0056 Score=39.86 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.|+++|++|+|||++++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999987753
No 426
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.93 E-value=0.0054 Score=42.82 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
+..++|.|+.|+|||++++.+...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 589999999999999999988765
No 427
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.91 E-value=0.0057 Score=46.32 Aligned_cols=29 Identities=3% Similarity=0.082 Sum_probs=25.6
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
+.+..|+++|.+||||||+.+.+...+..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999998875
No 428
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.91 E-value=0.0041 Score=43.34 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....++|.||+|+|||++++.+...+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999988765
No 429
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.90 E-value=0.0062 Score=43.57 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.6
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
...++++.|.|++|+|||+++..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999887765
No 430
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.90 E-value=0.006 Score=39.91 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.-.++++|.+|+|||++++.+.+-
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999987753
No 431
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0057 Score=39.98 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
-.|+++|..|+|||++++.+.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 4689999999999999988775
No 432
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.90 E-value=0.0058 Score=40.21 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.++++|.+|+|||++++.+.+-
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999988764
No 433
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.90 E-value=0.0064 Score=43.38 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHH
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
.+..++++|+||+||||++..+++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 478899999999999999887776
No 434
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0051 Score=39.40 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=20.8
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
...-.++++|..|+|||++++.+.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999998774
No 435
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.88 E-value=0.0043 Score=39.62 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
..-.++++|++|+|||++++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999887653
No 436
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.88 E-value=0.0043 Score=39.26 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|.+|+|||++++.+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999988775
No 437
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.88 E-value=0.0047 Score=40.22 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
-.|+++|..|+|||++++.+.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3588999999999999998764
No 438
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.87 E-value=0.0088 Score=39.08 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCchHHHH-HHHHHH
Q psy7658 41 NQVVVISGESGSGKTECT-KLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~-~~i~~~ 64 (114)
+.+++++|+.|+||||++ +.+..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999997 444443
No 439
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.87 E-value=0.0084 Score=44.67 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..+++++|++|+||||++..++.++...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999999887654
No 440
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.85 E-value=0.0045 Score=40.37 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
-.++++|++|+|||++++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999987754
No 441
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.84 E-value=0.0047 Score=39.44 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
-.++++|..|+|||++++.+.+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999998775
No 442
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.83 E-value=0.0073 Score=46.86 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+..|+|+|.+||||||+++.+...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998876
No 443
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.83 E-value=0.0056 Score=41.33 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...+++.||.|+|||+++..++.++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988873
No 444
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.81 E-value=0.0077 Score=45.57 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...+|+++|.+|+||||+.+.+...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998776
No 445
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.80 E-value=0.0057 Score=42.46 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|.+|+||||+++.+.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999998864
No 446
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.79 E-value=0.0072 Score=38.30 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.2
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHH
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~ 62 (114)
...-.++++|++|+||||+++.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 345678999999999999998765
No 447
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.79 E-value=0.011 Score=39.40 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.0
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
...++.+.|.|++|+|||+++..++-
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999876543
No 448
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.0085 Score=45.05 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...++|.||+|+|||++++.++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998876
No 449
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.79 E-value=0.0048 Score=41.07 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.-.|+++|.+|+|||++++.+++-
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999987654
No 450
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.78 E-value=0.0039 Score=43.02 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.|+|+|++|+||||+++.+.+
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999987653
No 451
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.77 E-value=0.0084 Score=39.72 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+|.|.|+.||||||..+.+...+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988763
No 452
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.77 E-value=0.0071 Score=39.19 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.-.++++|.+|+|||++++.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999866653
No 453
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0072 Score=38.85 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|..|+|||++++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999987754
No 454
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.76 E-value=0.0072 Score=39.29 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
-.++++|..|+|||++++.+.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999988775
No 455
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.75 E-value=0.0092 Score=42.25 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
...+++.|+.|+|||++++.+...+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456899999999999999999887754
No 456
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.74 E-value=0.0043 Score=43.68 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...++|.||+|+|||++++.+...+.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 44599999999999999999998775
No 457
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.74 E-value=0.006 Score=40.02 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.|+++|..|+|||++++.+.+
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 488999999999999988764
No 458
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.74 E-value=0.0044 Score=39.89 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.-.|+++|..|+|||++++.+.+-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999877653
No 459
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.73 E-value=0.0062 Score=39.40 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.-.|+++|..|+|||++++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999887643
No 460
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.71 E-value=0.0079 Score=42.57 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.0
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...++++.|.|++|+|||+++..++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3568999999999999999998877654
No 461
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.70 E-value=0.0096 Score=44.02 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
....++|.||+|+|||++++.+...+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999999876
No 462
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.70 E-value=0.0056 Score=39.87 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCchHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVM 62 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~ 62 (114)
-.++++|.+|+|||++++.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999998774
No 463
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.69 E-value=0.0072 Score=41.50 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++++|.+|+||||+++.+.+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57899999999999999887753
No 464
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.69 E-value=0.01 Score=42.87 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
...++|.|++|+|||++++.++..+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999998765
No 465
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.69 E-value=0.0061 Score=40.15 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
-.|+++|.+|+|||++++.+.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3588999999999999998765
No 466
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.68 E-value=0.0036 Score=49.71 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+..+++.||+|+|||++++.+++.+.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999998874
No 467
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.68 E-value=0.0043 Score=44.76 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++|+|++|+||||+++.+.+.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4789999999999999987654
No 468
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.67 E-value=0.012 Score=41.60 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=24.7
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+++.++|.|++|+|||+++..++....
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999887776554
No 469
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.66 E-value=0.0075 Score=38.94 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.|+++|..|+|||++++.+.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999987764
No 470
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.66 E-value=0.0077 Score=42.38 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.++|+|.+|+||||+++.+++.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999988864
No 471
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.66 E-value=0.0028 Score=47.69 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.+.+|+|+||+|||+++..+...+.
T Consensus 61 g~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHHTC
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4999999999999999998876643
No 472
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.65 E-value=0.0076 Score=41.40 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.++++|++|+||||+++.+++-
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999988764
No 473
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.65 E-value=0.0083 Score=39.10 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.|+++|..|+|||++++.+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 488999999999999988765
No 474
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.62 E-value=0.0087 Score=39.10 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~ 63 (114)
.-.|+++|.+|+|||++++.+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45689999999999999987764
No 475
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.62 E-value=0.01 Score=44.15 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
....|+++|.+|+||||+.+.+...+.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346799999999999999999887653
No 476
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.62 E-value=0.005 Score=40.49 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.-.|+++|.+|+||||+++.+++.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 456899999999999999987764
No 477
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.61 E-value=0.0039 Score=40.07 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.-.|+++|..|+|||++++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999998876543
No 478
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.60 E-value=0.0067 Score=42.66 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.+..+++.|++|+|||++++.+...+
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 35689999999999999999998865
No 479
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.60 E-value=0.011 Score=43.70 Aligned_cols=27 Identities=30% Similarity=0.510 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.+..+++.||+|+|||++++.+...+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 346799999999999999999998874
No 480
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.0092 Score=39.48 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.|+++|..|+|||++++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999887753
No 481
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.60 E-value=0.0043 Score=39.44 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=9.0
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~ 63 (114)
.++++|..|+|||++++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999987764
No 482
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.59 E-value=0.015 Score=40.73 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...+++.||+|+|||++++.+...+.
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 45778889999999999999988763
No 483
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.59 E-value=0.013 Score=41.96 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 40 GNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 40 ~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
...+++|+|..|+||||++..++..+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355799999999999999999887764
No 484
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.58 E-value=0.0086 Score=42.14 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
-.++++|.+|+||||+++.+++.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46889999999999999988764
No 485
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.57 E-value=0.014 Score=38.53 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=22.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
.|++-|.-||||||.++.+...+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999999999988653
No 486
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.57 E-value=0.0097 Score=39.27 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.-.|+++|..|+|||++++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999987653
No 487
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.56 E-value=0.013 Score=43.58 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
.....++|.||+|+|||++++.+...+.
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998873
No 488
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.53 E-value=0.0088 Score=40.92 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.-.|+++|.+|+||||+++.+++.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999988864
No 489
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.51 E-value=0.02 Score=44.76 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=24.9
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
......++|+|++|+|||++++.+...+.
T Consensus 204 ~~~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 204 RRRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 34577899999999999999999988763
No 490
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.51 E-value=0.013 Score=40.05 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..++|.|+.||||||.++.+...+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999887755
No 491
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.51 E-value=0.01 Score=38.73 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCchHHHHHHHHH
Q psy7658 42 QVVVISGESGSGKTECTKLVMQ 63 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~ 63 (114)
-.++++|..|+|||++++.+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999987765
No 492
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.50 E-value=0.012 Score=41.41 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658 39 SGNQVVVISGESGSGKTECTKLVMQYLA 66 (114)
Q Consensus 39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~ 66 (114)
..+..++|.||+|+|||++++.+.....
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 3467799999999999999999988653
No 493
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.50 E-value=0.0093 Score=46.39 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=25.3
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQYLAA 67 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~ 67 (114)
...+..++|+|++|+||||+++.+++....
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCC
Confidence 455788999999999999999999876543
No 494
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.49 E-value=0.0089 Score=41.62 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
-.|+|+|..|+||||+++.+++.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 458899999999999999998753
No 495
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.49 E-value=0.0093 Score=41.23 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++++|.+|+||||+++.+.+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999987754
No 496
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.49 E-value=0.01 Score=43.12 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q psy7658 43 VVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
.++|+|.+|+||||+++.+.+.-
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998874
No 497
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.48 E-value=0.012 Score=41.04 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658 42 QVVVISGESGSGKTECTKLVMQYL 65 (114)
Q Consensus 42 ~~i~l~G~sGsGKst~~~~i~~~~ 65 (114)
..++|.|+.|+|||++++.+....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999887754
No 498
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.48 E-value=0.0086 Score=44.00 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=22.8
Q ss_pred hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658 38 TSGNQVVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 38 ~~~~~~i~l~G~sGsGKst~~~~i~~~ 64 (114)
...+..++|+|.+|+||||+++.+.+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345678999999999999999998875
No 499
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.48 E-value=0.0099 Score=40.80 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q psy7658 43 VVVISGESGSGKTECTKLVMQY 64 (114)
Q Consensus 43 ~i~l~G~sGsGKst~~~~i~~~ 64 (114)
.++++|.+|+||||+++.+.+.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4889999999999999988764
No 500
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.46 E-value=0.0094 Score=44.15 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658 41 NQVVVISGESGSGKTECTKLVMQYLAAV 68 (114)
Q Consensus 41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~ 68 (114)
..+++++|++|+||||++..++..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999887643
Done!