RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7658
(114 letters)
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 187 bits (477), Expect = 4e-57
Identities = 52/112 (46%), Positives = 77/112 (68%), Gaps = 2/112 (1%)
Query: 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
+YG D++ Y GQ +G + PH+FA+ AY +A NQ +++SGESG+GKT K
Sbjct: 117 PIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYA 176
Query: 62 MQYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
M+Y A V+ S S + E++L ++P++ES GNAKT RNDNSSRFGK++++ F
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 228
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 185 bits (472), Expect = 1e-56
Identities = 55/113 (48%), Positives = 83/113 (73%), Gaps = 2/113 (1%)
Query: 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTK 59
+ +Y + +K Y+G+ LGT+ PH+FAI A+ + +Q +++SGESG+GKTE TK
Sbjct: 99 IPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 158
Query: 60 LVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
V++YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF
Sbjct: 159 FVLRYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHF 210
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 185 bits (471), Expect = 5e-56
Identities = 52/119 (43%), Positives = 79/119 (66%), Gaps = 9/119 (7%)
Query: 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
+Y +V+ Y G+ + PH++A+ AY ++ +Q ++ +GESG+GKTE TK V
Sbjct: 107 PIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKV 166
Query: 62 MQYLAAVNKSPSNL--------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
+QYLA V SP + Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF++++F
Sbjct: 167 IQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 225
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 183 bits (466), Expect = 6e-56
Identities = 52/114 (45%), Positives = 82/114 (71%), Gaps = 4/114 (3%)
Query: 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
++Y +K Y G+ + PH++A+ + AY ++ S NQ V+ISGESG+GKTE +K +
Sbjct: 55 NIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKI 114
Query: 62 MQYLAAVNKSPS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
MQ+L V+ + S I++ +L+++PLLE+FGNAKT+RNDNSSRFGK++++ F
Sbjct: 115 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 168
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 183 bits (466), Expect = 2e-55
Identities = 54/115 (46%), Positives = 82/115 (71%), Gaps = 5/115 (4%)
Query: 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
+Y +MV ++G+ ++PH+FAI AY ++ NQ ++I+GESG+GKTE TK V
Sbjct: 133 PIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKV 192
Query: 62 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSS FGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQF 247
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 182 bits (463), Expect = 3e-55
Identities = 55/115 (47%), Positives = 83/115 (72%), Gaps = 5/115 (4%)
Query: 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
+Y +MV ++G+ ++PH+FAI AY ++ NQ ++I+GESG+GKTE TK V
Sbjct: 133 PIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKV 192
Query: 62 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 181 bits (461), Expect = 8e-55
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 12/122 (9%)
Query: 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
+Y ++ KY G+ + PHLF++ AY + T NQ +I+GESG+GKTE TK V
Sbjct: 130 PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKV 189
Query: 62 MQYLAAV-----------NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 110
+ YLA V + + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++
Sbjct: 190 IMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRI 249
Query: 111 HF 112
HF
Sbjct: 250 HF 251
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 179 bits (455), Expect = 4e-54
Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 11/121 (9%)
Query: 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
+Y ++V Y G+ PH+F+I AY + T NQ ++I+GESG+GKT TK V
Sbjct: 132 PVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRV 191
Query: 62 MQYLAAV----------NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
+QY A + + +QI++A+P LE+FGNAKTVRNDNSSRFGKF+++H
Sbjct: 192 IQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIH 251
Query: 112 F 112
F
Sbjct: 252 F 252
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 169 bits (431), Expect = 2e-50
Identities = 52/112 (46%), Positives = 77/112 (68%), Gaps = 2/112 (1%)
Query: 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
+YG D++ Y GQ +G + PH+FA+ AY +A NQ +++SGESG+GKT K
Sbjct: 117 PIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYA 176
Query: 62 MQYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
M+Y A V+ S S + E++L ++P++ES GNAKT RNDNSSRFGK++++ F
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 228
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 158 bits (402), Expect = 1e-46
Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 16/126 (12%)
Query: 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
+Y ++ Y+G+ + PH++AI AY ++ +Q ++ +GESG+GKTE TK V
Sbjct: 130 PIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKV 189
Query: 62 MQYLAAV---------------NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGK 106
+QYLA V + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGK
Sbjct: 190 IQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGK 249
Query: 107 FLQVHF 112
F++++F
Sbjct: 250 FIRINF 255
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 39.2 bits (92), Expect = 6e-05
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 41 NQVVVISGESGSGKTECTKLVMQYL 65
N VV+I G +G GKT T++ Q++
Sbjct: 76 NSVVIIRGATGCGKT--TQVP-QFI 97
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 35.9 bits (83), Expect = 0.001
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 11/48 (22%)
Query: 8 DMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKT 55
D+++ GT+ + AY LA ++ GE+ SGKT
Sbjct: 238 DLIE------KGTVPSGV-----LAYLWLAIEHKFSAIVVGETASGKT 274
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.003
Identities = 27/158 (17%), Positives = 47/158 (29%), Gaps = 83/158 (52%)
Query: 13 YEGQILGTLS------PHLFAIGSAA-----------------------YSALATSGNQV 43
+ + G LS P L + AA Y+ALA+ +
Sbjct: 1719 FRSEK-GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD-- 1775
Query: 44 VVISGESGSGKTECTKLV------MQY-------------LAAVNKSPSNL--------- 75
V+S ES ++V MQ + A+N P +
Sbjct: 1776 -VMSIESLV------EVVFYRGMTMQVAVPRDELGRSNYGMIAIN--PGRVAASFSQEAL 1826
Query: 76 --ITEQILEASP-LLESFGNAKTVRNDNSSRFGKFLQV 110
+ E++ + + L+E + N N + Q
Sbjct: 1827 QYVVERVGKRTGWLVE-------IVNYNVE--NQ--QY 1853
Score = 30.4 bits (68), Expect = 0.11
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 35/103 (33%)
Query: 1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-----------NQVVVISGE 49
Y M ++ G++ + S A+ +G NQ V +G+
Sbjct: 1806 NYGMIAINP-----GRVAASFSQE--ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1858
Query: 50 SGSGKTECTKLVMQYLAAVNKSPS--NLITEQILEASPLLESF 90
L A++ + N I Q ++ L +S
Sbjct: 1859 ---------------LRALDTVTNVLNFIKLQKIDIIELQKSL 1886
Score = 27.3 bits (60), Expect = 1.4
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 49/131 (37%)
Query: 25 LFAIGSAAY-----SALATSGNQVVVISGE---------SGSGKTECTKLVMQ------- 63
LF IG Y ++L S + + + E S + + V +
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 64 ----YLAAVNKSPSNLITEQILEASPL-LESFG----NAKTVRNDNSSR--FGK------ 106
++ VN NL ++ P L AK + SR F +
Sbjct: 363 GKQVEISLVN-GAKNL----VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 107 --FLQV----H 111
FL V H
Sbjct: 418 NRFLPVASPFH 428
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 34.6 bits (80), Expect = 0.003
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 42 QVVVISGESGSGKTECTKLVMQYL 65
QV+ + G +G GK+ K++
Sbjct: 104 QVLGLVGTNGIGKSTALKILAGKQ 127
Score = 29.2 bits (66), Expect = 0.25
Identities = 7/15 (46%), Positives = 14/15 (93%)
Query: 41 NQVVVISGESGSGKT 55
++++V+ GE+G+GKT
Sbjct: 378 SEILVMMGENGTGKT 392
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 34.4 bits (78), Expect = 0.004
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 9/50 (18%)
Query: 16 QILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYL 65
Q+ L L G + G G+GKT + + +
Sbjct: 28 QLDILLGNWLRNPGH-------HYPR--ATLLGRPGTGKTVTLRKLWELY 68
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 34.0 bits (78), Expect = 0.005
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 41 NQVVVISGESGSGKTECTKLVMQYLAA 67
Q+ V+ GSGKT K++ Q +
Sbjct: 21 RQMTVLDLHPGSGKT--RKILPQIIKD 45
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA
replication, viral replication, nucleotide-binding;
2.10A {Kokobera virus} PDB: 2v6j_A
Length = 431
Score = 33.7 bits (77), Expect = 0.006
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 41 NQVVVISGESGSGKTECTKLVMQYL-AAVNKSPSNLITE 78
++ V+ G+GKT +++ Q + AV K +I
Sbjct: 2 RELTVLDLHPGAGKT--RRVLPQLVREAVKKRLRTVILA 38
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 33.5 bits (77), Expect = 0.010
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 41 NQVVVISGESGSGKTECTKLVMQYL 65
N ++ + G++G GKT K++ +
Sbjct: 25 NTILGVLGKNGVGKTTVLKILAGEI 49
Score = 29.2 bits (66), Expect = 0.28
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 41 NQVVVISGESGSGKT 55
+++ I G +G GKT
Sbjct: 294 GEIIGILGPNGIGKT 308
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 33.3 bits (75), Expect = 0.010
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 27 AIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYL 65
I Y +L +S N++ I+ S K + VM L
Sbjct: 31 RIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 33.2 bits (75), Expect = 0.010
Identities = 9/56 (16%), Positives = 17/56 (30%)
Query: 27 AIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILE 82
A + + G +G+GKT +K + + V K +
Sbjct: 31 DAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAY 86
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 32.8 bits (74), Expect = 0.012
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 44 VVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILE 82
V ++G G GKT + L + TE++ +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQ 42
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 32.3 bits (74), Expect = 0.021
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 41 NQVVVISGESGSGKTECTKLVMQYLA--AVNKSPSNLITEQILEASPLLESFGN 92
VV I G +G+GKT K++ L + S + + L F
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER 170
Score = 30.0 bits (68), Expect = 0.15
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 41 NQVVVISGESGSGKT 55
+V+ I G +G GKT
Sbjct: 382 GEVIGIVGPNGIGKT 396
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.023
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 41 NQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNL--IT-------EQILEA-SPLLESF 90
+ V+I G GSGKT V K + + E +LE LL
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 91 GNAKTVRNDNSSR 103
T R+D+SS
Sbjct: 210 DPNWTSRSDHSSN 222
>2jlq_A Serine protease subunit NS3; ribonucleoprotein,
nucleotide-binding, viral nucleoprotein, endoplasmic
reticulum, helicase, hydrolase; 1.67A {Dengue virus 4}
PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A*
2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Length = 451
Score = 31.7 bits (72), Expect = 0.031
Identities = 4/27 (14%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 41 NQVVVISGESGSGKTECTKLVMQYLAA 67
++ ++ G+GKT +++ +
Sbjct: 19 KRLTIMDLHPGAGKT--KRILPSIVRE 43
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 32.0 bits (72), Expect = 0.033
Identities = 11/50 (22%), Positives = 16/50 (32%)
Query: 27 AIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLI 76
I S + I G +G+GKT K V+ L +
Sbjct: 31 KIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHV 80
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 31.2 bits (70), Expect = 0.045
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 43 VVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSS 102
V+I G GSGKT +Y + + + + LLE +
Sbjct: 22 TVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYK-------DPK 74
Query: 103 RFGKFLQVHF 112
++ Q +
Sbjct: 75 KWAMPFQSYV 84
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 31.2 bits (70), Expect = 0.053
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 9 MVKKYEGQILGTLSPH-LFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAA 67
+V + L+ A + V I+G +G+G T TK +++ L +
Sbjct: 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAI--KEKKHHVTINGPAGTGATTLTKFIIEALIS 71
Query: 68 VNKSP 72
++
Sbjct: 72 TGETG 76
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 31.1 bits (71), Expect = 0.055
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 42 QVVVISGESGSGKTECTKLVMQYL 65
VV I G +G+GK+ K++ L
Sbjct: 48 MVVGIVGPNGTGKSTAVKILAGQL 71
Score = 29.2 bits (66), Expect = 0.23
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 41 NQVVVISGESGSGKT 55
+V+ I G +G GKT
Sbjct: 312 GEVIGIVGPNGIGKT 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 30.2 bits (68), Expect = 0.10
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 22 SPHLFAIGSAAYSALATSGNQVVVI--SGESGSGKTECTKLVMQYLAAV 68
S H S+ G++ +I SG + SGKT K + ++L
Sbjct: 3 SSHHHHHHSSGLVP---RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNC 48
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 30.1 bits (67), Expect = 0.11
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 40 GNQVVVISGESGSGKT 55
G ++++SG GSGK+
Sbjct: 8 GGNILLLSGHPGSGKS 23
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 29.8 bits (67), Expect = 0.12
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 43 VVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGN-AKTVR 97
V++I+G GSGK+E KL+ + A V S+++ ++ + E + AK +R
Sbjct: 3 VILITGMPGSGKSEFAKLLKERGAKV-IVMSDVVRKRYSIEAKPGERLMDFAKRLR 57
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 29.5 bits (67), Expect = 0.12
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 26 FAIGS--AAYSALATSGNQVVVISGESGSGKT 55
F L Q + + GE G+GK+
Sbjct: 19 FLGTENAELVYVLRHKHGQFIYVWGEEGAGKS 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 30.2 bits (68), Expect = 0.13
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 41 NQVVVISGESGSGKTECTKLVMQYLAA 67
V+ G+GKT + + Q LA
Sbjct: 8 GMTTVLDFHPGAGKT--RRFLPQILAE 32
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 0.13
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 14/64 (21%)
Query: 63 QYL--AA---VN---KSPSNLI----TEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 110
++L A N + P N I + + ++ T + S + ++Q
Sbjct: 162 KFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLY--YVQF 219
Query: 111 HFKE 114
FK+
Sbjct: 220 FFKQ 223
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 29.8 bits (67), Expect = 0.14
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 30 SAAYSALATSGNQVVVI--SGESGSGKTECTKLVMQYLAAVNKSPSNLITEQI 80
+ +G + +I SG + SGK+ ++Q L +
Sbjct: 9 QTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVIL 61
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 29.6 bits (67), Expect = 0.14
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 43 VVVISGESGSGKTECTKLVMQYLAA 67
+ ++GE G+GKT + ++A
Sbjct: 25 FIALTGEPGTGKT--I-FSLHFIAK 46
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 29.6 bits (66), Expect = 0.16
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 43 VVVISGESGSGKTECTKLVMQYL 65
V++ SG+ SGK T+ + L
Sbjct: 13 VLLFSGKRKSGKDFVTEALQSRL 35
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 29.3 bits (66), Expect = 0.20
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 43 VVVISGESGSGKTECTKLVMQYLAA 67
VV++SG G+GKT Q+L
Sbjct: 25 VVLLSGGPGTGKT--I-FSQQFLWN 46
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 29.2 bits (65), Expect = 0.20
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 43 VVVISGESGSGKTECTKLVMQYL 65
++ I+G G GKT + + L
Sbjct: 7 IIWINGPFGVGKTHTAHTLHERL 29
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 29.2 bits (66), Expect = 0.22
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 43 VVVISGESGSGKTECTKLVMQYLAAVNKSPSNL 75
V+ I G S SGKT + Q L S
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.4 bits (66), Expect = 0.24
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 44 VVISGESGSGKTECTKLVMQYLAAVNKSP 72
+++ G++G GKT K V+ +A +
Sbjct: 926 LILVGKAGCGKTATWKTVIDAMAIFDGHA 954
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 29.5 bits (66), Expect = 0.24
Identities = 7/25 (28%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 43 VVVISGESGSGKTECTKLVMQYLAA 67
+++ +G +G+GK T LV +++
Sbjct: 283 IILATGATGTGK---TLLVSRFVEN 304
Score = 29.1 bits (65), Expect = 0.31
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 43 VVVISGESGSGKTECTKLVMQYLAA 67
++SG SG+GKT +Q+L
Sbjct: 41 STLVSGTSGTGKT--L-FSIQFLYN 62
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 29.1 bits (65), Expect = 0.28
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 43 VVVISGESGSGKTECTKLVMQYLAA 67
V+++G +G+GK T Q++
Sbjct: 32 TVLLTGGTGTGK---TTFAAQFIYK 53
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 28.5 bits (63), Expect = 0.34
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 29 GSAAYSALATSGNQVVVISGESGSGKT 55
S + + VV+ G SGSGKT
Sbjct: 17 NLYFQSMMTGEPTRHVVVMGVSGSGKT 43
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 28.6 bits (64), Expect = 0.34
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 43 VVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQI 80
++ +SG + SGK+ + +M+ L +
Sbjct: 27 LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVIL 64
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 28.6 bits (65), Expect = 0.37
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 41 NQVVVISGESGSGK 54
N++VVI+G SGSGK
Sbjct: 24 NRLVVITGVSGSGK 37
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 28.4 bits (64), Expect = 0.37
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 39 SGNQVVVI--SGESGSGKTECTKLVMQYL 65
S + VI +G + SGKT + + + L
Sbjct: 2 SAPKPFVIGIAGGTASGKTTLAQALARTL 30
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 28.2 bits (62), Expect = 0.41
Identities = 4/15 (26%), Positives = 12/15 (80%)
Query: 41 NQVVVISGESGSGKT 55
++++++G S +GK+
Sbjct: 3 TRMIILNGGSSAGKS 17
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus
radiodurans} PDB: 2vf8_A*
Length = 842
Score = 28.6 bits (65), Expect = 0.42
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 41 NQVVVISGESGSGK 54
+ +VV +G SGSGK
Sbjct: 36 DALVVFTGVSGSGK 49
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 28.4 bits (64), Expect = 0.45
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 41 NQVVVISGESGSGKTECTKLVMQYLA 66
NQ++V GE+GSGK T + Q++
Sbjct: 109 NQIMVFVGETGSGK---TTQIPQFVL 131
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 28.1 bits (62), Expect = 0.57
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 41 NQVVVISGESGSGKTECTKLVMQYL 65
N ++ I E GSG K + + L
Sbjct: 14 NLIITIEREYGSGGRIVGKKLAEEL 38
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 28.0 bits (62), Expect = 0.58
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 43 VVVISGESGSGKTECTKLVMQYLAAV 68
+++++G +GKT ++ + L
Sbjct: 7 LIIVTGHPATGKTTLSQALATGLRLP 32
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 27.8 bits (63), Expect = 0.69
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 42 QVVVISGESGSGKTECTKLV 61
+V+ I G SGSGK+ TKL+
Sbjct: 36 EVIGIVGRSGSGKSTLTKLI 55
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 27.6 bits (61), Expect = 0.73
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 14/69 (20%)
Query: 44 VVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSR 103
+ I G G+GK+ + + + L + E + E +P E + + +
Sbjct: 3 IAIFGTVGAGKSTISAEISKKLGY------EIFKEPVEE-NPYFEQYYK-------DLKK 48
Query: 104 FGKFLQVHF 112
+Q++
Sbjct: 49 TVFKMQIYM 57
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 27.7 bits (61), Expect = 0.79
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 43 VVVISGESGSGKT 55
+ +I G++GSGK+
Sbjct: 25 INLIIGQNGSGKS 37
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 27.9 bits (61), Expect = 0.88
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 27 AIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLIT 77
+ AL ++ G +G+GKT +LV++ L A S L+
Sbjct: 30 RLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVK 80
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 27.7 bits (62), Expect = 0.91
Identities = 8/12 (66%), Positives = 12/12 (100%)
Query: 44 VVISGESGSGKT 55
+V++GE+GSGKT
Sbjct: 178 IVVAGETGSGKT 189
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 27.3 bits (60), Expect = 0.92
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 41 NQVVVISGESGSGKTECTKLVMQYLAAVNKS 71
N+VVV++G G G T ++L M L +
Sbjct: 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 33
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.3 bits (60), Expect = 0.99
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 44 VVISGESGSGKTECTKLVMQYLA 66
++I+GE G GKT K +++ L
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLG 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB:
2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 27.2 bits (61), Expect = 1.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 42 QVVVISGESGSGK 54
+VVV+ G SGSGK
Sbjct: 51 EVVVVIGPSGSGK 63
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 27.3 bits (61), Expect = 1.1
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 44 VVISGESGSGKT 55
V++ G +GSGKT
Sbjct: 174 VIVCGGTGSGKT 185
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 27.1 bits (61), Expect = 1.1
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 4/22 (18%)
Query: 44 VVISGESGSGKTECTKLVMQYL 65
V + G G+G+ +YL
Sbjct: 27 VWLYGAPGTGRM----TGARYL 44
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 42 QVVVISGESGSGKT 55
V+ I G SGSGK+
Sbjct: 33 DVISIIGSSGSGKS 46
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 27.0 bits (59), Expect = 1.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 30 SAAYSALATSGNQVVVISGESGSGKT 55
+ +A +V+ G SGSGK+
Sbjct: 7 YKSEAAAVRRFPGSIVVMGVSGSGKS 32
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 26.8 bits (60), Expect = 1.4
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 18 LGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQ 63
+G+ H + +VI G SG GK K ++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSMNNI-YPLVICGPSGVGKGTLIKKLLN 45
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 27.3 bits (60), Expect = 1.4
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVN 69
T+ N I + G+GK+ K+++
Sbjct: 34 TNSN--WTILAKPGAGKSFTAKMLLLREYMQG 63
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 26.8 bits (60), Expect = 1.4
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 41 NQVVVISGESGSGK 54
V ++GE+GS
Sbjct: 27 TSPVFLTGEAGSPF 40
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 27.1 bits (60), Expect = 1.4
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 38 TSGNQVVVISGESGSGKT 55
V I G +G GK+
Sbjct: 144 NGEPGWVTIYGMAGCGKS 161
Score = 25.9 bits (57), Expect = 3.9
Identities = 5/34 (14%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 15 GQILGTLSPHLFAIGSAAYSALATSGNQVVVISG 48
G+++ T H + ++ N +++ +G
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTN---KSNHLLLATG 719
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 26.9 bits (59), Expect = 1.4
Identities = 8/20 (40%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 43 VVVISGESGSGKTE-CTKLV 61
V + G SGKT K V
Sbjct: 6 VWQVVGYKHSGKTTLMEKWV 25
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI,
MCSG, PRK04182 class ME structural genomics, protein
structure initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 26.9 bits (59), Expect = 1.5
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 41 NQVVVISGESGSGKTECTKLVMQYLA 66
++ I E GSG K + ++
Sbjct: 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural
protein structure initiative, midwest center for
structural genomics; HET: MSE; 2.00A {Pseudomonas
aeruginosa PAO1}
Length = 500
Score = 26.9 bits (60), Expect = 1.5
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 43 VVVISGESGSGKTECTKLVMQYL 65
+++I+G G+GK E KL+ +++
Sbjct: 45 IILINGIEGAGKGETVKLLNEWM 67
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 26.7 bits (60), Expect = 1.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 41 NQVVVISGESGSGKT 55
++ +VISG SG+GK+
Sbjct: 1 SRPIVISGPSGTGKS 15
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 27.0 bits (59), Expect = 1.6
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVM 62
++ GL VK +I T + L + + +G G+GKT +
Sbjct: 32 ELIGLKPVKD---RIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMA 88
Query: 63 QYLAA---------VNKSPSNLITEQILEASPLLE 88
L V+ + +L+ + I +P +
Sbjct: 89 GLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTK 123
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+
ATPase, response regulator, transcriptional activator,
ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB:
1zit_A 2jrl_A
Length = 368
Score = 26.7 bits (60), Expect = 1.8
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 44 VVISGESGSGK 54
V+I+GESG+GK
Sbjct: 155 VLITGESGTGK 165
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 26.4 bits (59), Expect = 2.0
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 15 GQILGTLSPHLFAIGSAAYSALAT-SGNQVVVI----SGESG 51
++L T+S H I + + L + S + ++ S
Sbjct: 329 DEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQD 370
Score = 26.4 bits (59), Expect = 2.4
Identities = 2/39 (5%), Positives = 9/39 (23%), Gaps = 5/39 (12%)
Query: 15 GQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSG 53
G+ L + + ++ + +
Sbjct: 239 GEFLKYIEDDQEPVQGGIFALSWLDSQKFA-----TVGA 272
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 26.4 bits (58), Expect = 2.2
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 41 NQVVVISGESGSGKT 55
++ +I+G +G GK+
Sbjct: 2 KKLYIITGPAGVGKS 16
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54
activator, bacterial transcription, DIM transcription;
HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1
c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Length = 387
Score = 26.3 bits (59), Expect = 2.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 44 VVISGESGSGK 54
V+I+GESG GK
Sbjct: 163 VLITGESGVGK 173
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 26.2 bits (57), Expect = 2.5
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 12/63 (19%)
Query: 40 GNQVVVISGESGSGKTECTKLVMQYLAAV------------NKSPSNLITEQILEASPLL 87
G + + I G GK+ KL+ + ++ N LL
Sbjct: 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLL 60
Query: 88 ESF 90
+
Sbjct: 61 DMM 63
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 26.0 bits (58), Expect = 2.5
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 30 SAAYSALATSGNQVVVISGESGSGKTE-CTKLVMQY 64
S+ L G + +V+ G SG G++ L+ Q
Sbjct: 8 SSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 26.2 bits (57), Expect = 2.7
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 43 VVVISGESGSGKTECTKLVMQYLAAVNKS 71
+ +++G G GK+ V + L +
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGIN 31
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 26.2 bits (58), Expect = 2.8
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 31 AAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS 71
G+++VV++G G+GK+ TK V ++
Sbjct: 197 VLDQLA---GHRLVVLTGGPGTGKSTTTKAVADLAESLGLE 234
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 26.1 bits (57), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 41 NQVVVISGESGSGKT 55
+ + V+ G SGSGK+
Sbjct: 8 HHIYVLMGVSGSGKS 22
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 26.1 bits (57), Expect = 2.8
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 35 ALATSGNQVVVISGESGSGKT 55
+ + + + G +GSGK+
Sbjct: 146 EMCDLDSFFLFLHGRAGSGKS 166
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 26.5 bits (57), Expect = 2.8
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 31 AAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLE 88
A A+ + +I +GSGKT + L+ ++ + + P+ E
Sbjct: 256 LAQPAIN---GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYE 310
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two
component system, AAA domain, NTRC family, DNA-binding;
HET: ATP; 3.0A {Salmonella typhimurium}
Length = 304
Score = 25.9 bits (58), Expect = 2.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 44 VVISGESGSGK 54
V+I G+SG+GK
Sbjct: 28 VLIHGDSGTGK 38
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 26.0 bits (58), Expect = 3.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 44 VVISGESGSGKTECTKLVMQ 63
+V+ G SG GK K V+
Sbjct: 15 LVVCGPSGVGKGTLIKKVLS 34
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 26.0 bits (57), Expect = 3.1
Identities = 6/66 (9%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 6 GLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYL 65
G +V + + + + + + ++++G +G+GK+ + +
Sbjct: 20 GTRIVSGGKLKRMTREKAKQVTVAGVPM--PRDAEPRHLLVNGATGTGKSVLLRELAYTG 77
Query: 66 AAVNKS 71
Sbjct: 78 LLRGDR 83
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 25.8 bits (56), Expect = 3.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 40 GNQVVVISGESGSGKTECT 58
V+I+GE+ GK+E +
Sbjct: 15 DKMGVLITGEANIGKSELS 33
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 25.6 bits (56), Expect = 3.6
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 43 VVVISGESGSGKT 55
+++++G G GK+
Sbjct: 6 LIILTGLPGVGKS 18
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 25.8 bits (56), Expect = 3.6
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 43 VVVISGESGSGKT 55
++ ++G SG+G +
Sbjct: 7 IISVTGSSGAGTS 19
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 25.6 bits (57), Expect = 3.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 42 QVVVISGESGSGKT 55
+VVV+SG S GK+
Sbjct: 21 RVVVLSGPSAVGKS 34
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 25.8 bits (57), Expect = 3.7
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 7/38 (18%)
Query: 15 GQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGS 52
+IL +P S A+ + V GS
Sbjct: 109 YRILQKAAPFDRRATSLAWHP---THPSTVA----VGS 139
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 25.4 bits (56), Expect = 3.7
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 35 ALATSGNQVVV-ISGESGSGKTECTKLVMQYLAA 67
+ +V +SG GSGK+ + + L+A
Sbjct: 15 LDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 25.8 bits (56), Expect = 3.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 40 GNQVVVISGESGSGKTECT 58
V+I+G+SG GK+E
Sbjct: 33 YGLGVLITGDSGVGKSETA 51
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 25.6 bits (57), Expect = 4.1
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 41 NQVVVISGESGSGKT 55
+ ++V +G SGSGK+
Sbjct: 46 DALIVFTGLSGSGKS 60
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 25.4 bits (55), Expect = 4.2
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 43 VVVISGESGSGKTE-CTKLVMQY 64
++ I G S SGKT T+++
Sbjct: 4 ILSIVGTSDSGKTTLITRMMPIL 26
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 25.5 bits (57), Expect = 4.3
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 44 VVISGESGSGKTE-CTKLVMQY 64
+V+ G G G+ L+ ++
Sbjct: 8 LVLLGAHGVGRRHIKNTLITKH 29
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 25.7 bits (56), Expect = 4.4
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 25 LFAIGSAAYSALATSGNQVVVISGES 50
LFA G A + V SG S
Sbjct: 361 LFAPGEDIIGASSDCSTCFVSQSGTS 386
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 25.8 bits (56), Expect = 4.5
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 46 ISGESGSGKTE-CTKLVMQYLAAVNKSPSNLI--TEQI 80
+ G SGSGKT+ + L + +Q+
Sbjct: 6 LVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 25.2 bits (56), Expect = 4.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 39 SGNQVVVISGESGSGKT 55
+G + VV+SG SG+GK+
Sbjct: 2 AGPRPVVLSGPSGAGKS 18
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 25.4 bits (56), Expect = 4.6
Identities = 2/13 (15%), Positives = 7/13 (53%)
Query: 43 VVVISGESGSGKT 55
++++ G K+
Sbjct: 3 LIILEGPDCCFKS 15
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 25.7 bits (57), Expect = 4.6
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 15 GQILGTLSPHLFAIGSAAYSA----LAT-SGNQVVVISGESGSGK 54
+ TL+ + + + +A V+ + +S +GK
Sbjct: 234 KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGK 278
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 25.6 bits (57), Expect = 4.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 41 NQVVVISGESGSGKT 55
++VV++G SGSGK+
Sbjct: 44 GKLVVLTGLSGSGKS 58
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 25.5 bits (55), Expect = 4.6
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 42 QVVVISGESGSGKTECTKLVMQYLAAV 68
V + G+GK+ L +Q A +
Sbjct: 31 TVGALVSPGGAGKSM---LALQLAAQI 54
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 25.7 bits (55), Expect = 4.8
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 31 AAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLE 88
A A+ + +I +GSGKT + L+ ++ + + P+ E
Sbjct: 256 LAQPAIN---GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYE 310
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 25.1 bits (56), Expect = 5.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 42 QVVVISGESGSGKT 55
++V+SG SG GK
Sbjct: 9 LLIVLSGPSGVGKG 22
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 25.1 bits (56), Expect = 5.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 42 QVVVISGESGSGKT 55
++V+SG SG GK
Sbjct: 7 LLIVLSGPSGVGKG 20
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 25.2 bits (54), Expect = 5.2
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 42 QVVVISGESGSGKTECTKLVMQYLA 66
+++ G+SG+GKT ++ +
Sbjct: 33 IAILLGGQSGAGKTTIHRIKQKEFQ 57
>2bjv_A PSP operon transcriptional activator; AAA, transcription
activation, gene regulation, sigma54 activator,
enhancer binding protein, PSPF; 1.7A {Escherichia coli}
PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Length = 265
Score = 25.2 bits (56), Expect = 5.2
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 44 VVISGESGSGK 54
V+I GE G+GK
Sbjct: 32 VLIIGERGTGK 42
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 25.5 bits (56), Expect = 5.3
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 31 AAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASP----- 85
AA AL ++ VISG G+GKT ++ L + +I A+P
Sbjct: 157 AAAVALT---RRISVISGGPGTGKTTTVAKLLAALIQMADGE----RCRIRLAAPTGKAA 209
Query: 86 --LLESFGNAK 94
L ES G A
Sbjct: 210 ARLTESLGKAL 220
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 24.9 bits (55), Expect = 5.5
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 27 AIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLA---AVNKSPS-NLITE 78
+V ++G+ G+GKT T+ ++Q + V KSP+ L+ E
Sbjct: 20 KFAEILLKLHTEKAI-MVYLNGDLGAGKTTLTRGMLQGIGHQGNV-KSPTYTLVEE 73
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 25.4 bits (56), Expect = 5.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 41 NQVVVISGESGSGKTECTKLVM 62
Q V + G SG GK+ +L+
Sbjct: 416 GQTVALVGNSGCGKSTTVQLMQ 437
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 25.2 bits (54), Expect = 5.9
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 43 VVVISGESGSGKTE-CTKLVMQY 64
++ + SG+GKT KL+
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPAL 30
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 25.3 bits (55), Expect = 5.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 32 AYSALATSGNQVVVISGESGSGK 54
AY N +++I GE+ GK
Sbjct: 308 AYGVSLPWNNSLLIIGGETAGGK 330
Score = 24.9 bits (54), Expect = 8.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 32 AYSALATSGNQVVVISGESGSG 53
A +A+ G++ +I+GE+ G
Sbjct: 192 AGAAVVNKGDKTWLINGEAKPG 213
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 25.0 bits (54), Expect = 6.0
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 44 VVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQIL 81
++++G G GKT K + + +L E+ L
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQL 51
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 24.9 bits (55), Expect = 6.4
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 44 VVISGESGSGKTECTKLVMQYLAAVNKSPSNL 75
+V+S SG GKT +++ K +N+
Sbjct: 30 LVLSSPSGCGKTTVANKLLE------KQKNNI 55
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 25.2 bits (55), Expect = 7.3
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 44 VVISGESGSGKTECTKLVMQYLAAVNKSP 72
V++ G SG GKT ++ ++ + V+
Sbjct: 909 VMMVGPSGGGKTTSWEVYLEAIEQVDNIK 937
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 24.8 bits (55), Expect = 7.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 25 LFAIGSAAYSALATSGNQVVVISGES 50
++A GS+ S+ TS + ISG S
Sbjct: 199 IYAPGSSITSSWYTSNSATNTISGTS 224
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 24.8 bits (55), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 44 VVISGESGSGKTECTKLVMQYLAAVNKSPS 73
+IS SG+GKT + +++ LA + S S
Sbjct: 10 FIISAPSGAGKTSLVRALVKALAEIKISIS 39
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 24.9 bits (53), Expect = 8.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 40 GNQVVVISGESGSGKT 55
V +SG +G+GK+
Sbjct: 28 DELVTTLSGGNGAGKS 43
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 24.9 bits (55), Expect = 8.5
Identities = 4/41 (9%), Positives = 8/41 (19%), Gaps = 8/41 (19%)
Query: 15 GQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKT 55
I A++ V G+ +
Sbjct: 245 LTYPQREFDAGSTINQIAFNP---KLQWVA-----VGTDQG 277
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 24.7 bits (54), Expect = 8.9
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 44 VVISGESGSGKTECTKLVMQYLAAVNKS 71
+ ++G+ G GKT +++ +A+
Sbjct: 3 LAVAGKGGVGKTTVAAGLIKIMASDYDK 30
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein
phosphatase, dual activity, product, substrate,
transferase, hydrolase; 1.95A {Staphylococcus xylosus}
SCOP: c.98.2.1 c.91.1.2
Length = 314
Score = 24.6 bits (53), Expect = 9.7
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 3 DMYGLDMVKKYEGQILGT-------------LSPHLFAIGSAAYSALATSGNQVVVISGE 49
++ K++E ++ + H A ++ + L V+I+G+
Sbjct: 93 PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGD 152
Query: 50 SGSGKTECTKLVMQ 63
SG GK+E +++
Sbjct: 153 SGIGKSETALELIK 166
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.356
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,606,083
Number of extensions: 81493
Number of successful extensions: 542
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 160
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.9 bits)