BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7660
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 40.0 bits (92), Expect = 0.017, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 32 AELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTTI--PLIAHILNTWYSLKSCG 89
AEL+AI+ L K VN IV DS AL I+++ T P++ I+ +
Sbjct: 1063 AELMAILLALQDSKE--TVN--IVTDSQYALGVISSQPTQSESPIVQQIIEEL----TKK 1114
Query: 90 KNVAFLWCPSHTGISGNEIVDR 111
+ V W P+H GI GNE +D+
Sbjct: 1115 EQVYLTWVPAHKGIGGNEKIDK 1136
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 38.1 bits (87), Expect = 0.067, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 32 AELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTTI--PLIAHILNTWYSLKSCG 89
AEL+A++ L K + VN IV DS L I+++ T P++ I+ +
Sbjct: 1065 AELMAVLIALQDSKEQ--VN--IVTDSQYVLGIISSQPTQSDSPIVQQIIEEL----TKK 1116
Query: 90 KNVAFLWCPSHTGISGNEIVDR 111
+ V W P+H GI GNE +D+
Sbjct: 1117 ERVYLTWVPAHKGIGGNEKIDK 1138
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 32 AELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTTI--PLIAHILNTWYSLKSCG 89
AEL+AI L+ + P+VN IV DS A+ + + T PLI I+ +L
Sbjct: 1091 AELMAIKMALED--SGPNVN--IVTDSQYAMGILTAQPTQSDSPLIEQII----ALMVQK 1142
Query: 90 KNVAFLWCPSHTGISGNEIVDRATRQ 115
+ W P+ GI GNE +D+ Q
Sbjct: 1143 HQIYLQWVPADKGIGGNEEIDKLVSQ 1168
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 36.6 bits (83), Expect = 0.17, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 32 AELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTTIPLIAHILNTWYSLKSCG 89
AEL AI L +RP+VN IV DS AL I + + L+ I+
Sbjct: 1064 AELHAIQLALQD--SRPEVN--IVTDSQYALGIIQAQPDRSGSELVNQIIEQLIK----K 1115
Query: 90 KNVAFLWCPSHTGISGNEIVDR 111
+ V W P+H GI GNE VD+
Sbjct: 1116 EKVYLSWVPAHKGIGGNEQVDK 1137
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 36.2 bits (82), Expect = 0.22, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 32 AELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTTI--PLIAHILNTWYSLKSCG 89
A+L AI L+ + P+VN IV DS A+ + + T PL+ I+ +L
Sbjct: 1093 AKLTAIKMALED--SGPNVN--IVTDSQYAMGILTAQPTQSDSPLVEQII----ALMIQK 1144
Query: 90 KNVAFLWCPSHTGISGNEIVDR 111
+ + W P+H GI GNE +D+
Sbjct: 1145 QQIYLQWVPAHKGIGGNEEIDK 1166
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 35.8 bits (81), Expect = 0.31, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 32 AELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTTI--PLIAHILNTWYSLKSCG 89
AEL AI L+ + P VN IV DS A+ + + T PL+ I+ ++
Sbjct: 1090 AELTAIKMALED--SGPKVN--IVTDSQYAMGILTAQPTQSDSPLVEQIIAQMVQKEA-- 1143
Query: 90 KNVAFLWCPSHTGISGNEIVDR 111
+ W P+H GI GNE +D+
Sbjct: 1144 --IYLQWVPAHKGIGGNEEIDK 1163
>sp|Q31BZ0|CHLB_PROM9 Light-independent protochlorophyllide reductase subunit B
OS=Prochlorococcus marinus (strain MIT 9312) GN=chlB
PE=3 SV=1
Length = 525
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 163 PWNVSDCNSRYEESISWSGNKCFIDHYSHPYLKVLP---FNMFKQSYKYL 209
P +V D +RY + W G D + HP + L +MFK ++++
Sbjct: 392 PMHVQDVPARYSPQMGWEGANVIFDDWVHPLMMGLEEHLIDMFKHDFEFV 441
>sp|A2BVK6|CHLB_PROM5 Light-independent protochlorophyllide reductase subunit B
OS=Prochlorococcus marinus (strain MIT 9515) GN=chlB
PE=3 SV=1
Length = 526
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 163 PWNVSDCNSRYEESISWSGNKCFIDHYSHPYLKVLP---FNMFKQSYKYL 209
P +V D +RY + W G D + HP + L +MFK ++++
Sbjct: 392 PMHVQDVPARYSPQMGWEGANVIFDDWVHPLMMGLEEHLIDMFKHDFEFV 441
>sp|A3PBR8|CHLB_PROM0 Light-independent protochlorophyllide reductase subunit B
OS=Prochlorococcus marinus (strain MIT 9301) GN=chlB
PE=3 SV=1
Length = 523
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 163 PWNVSDCNSRYEESISWSGNKCFIDHYSHPYLKVLP---FNMFKQSYKYL 209
P +V D +RY + W G D + HP + L +MFK ++++
Sbjct: 392 PMHVQDVPARYSPQMGWEGANVIFDDWVHPLMMGLEEHLIDMFKHDFEFV 441
>sp|A2BQ25|CHLB_PROMS Light-independent protochlorophyllide reductase subunit B
OS=Prochlorococcus marinus (strain AS9601) GN=chlB PE=3
SV=1
Length = 523
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 163 PWNVSDCNSRYEESISWSGNKCFIDHYSHPYLKVLP---FNMFKQSYKYL 209
P +V D +RY + W G D + HP + L +MFK ++++
Sbjct: 392 PMHVQDVPARYSPQMGWEGANVIFDDWVHPLMMGLEEHLIDMFKHDFEFV 441
>sp|Q7V2D6|CHLB_PROMP Light-independent protochlorophyllide reductase subunit B
OS=Prochlorococcus marinus subsp. pastoris (strain
CCMP1986 / MED4) GN=chlB PE=3 SV=1
Length = 526
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 163 PWNVSDCNSRYEESISWSGNKCFIDHYSHPYLKVLP---FNMFKQSYKYL 209
P +V D +RY + W G D + HP + L +MFK ++++
Sbjct: 392 PMHVQDVPARYSPQMGWEGANVIFDDWVHPLMMGLEEHLIDMFKHDFEFV 441
>sp|A8G3Q9|CHLB_PROM2 Light-independent protochlorophyllide reductase subunit B
OS=Prochlorococcus marinus (strain MIT 9215) GN=chlB
PE=3 SV=1
Length = 523
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 163 PWNVSDCNSRYEESISWSGNKCFIDHYSHPYLKVLP---FNMFKQSYKYL 209
P +V D +RY + W G D + HP + L +MFK ++++
Sbjct: 392 PMHVQDVPARYSPQMGWEGANVIFDDWVHPLMMGLEEHLIDMFKHDFEFV 441
>sp|C7M077|MSHD_ACIFD Mycothiol acetyltransferase OS=Acidimicrobium ferrooxidans (strain
DSM 10331 / JCM 15462 / NBRC 103882 / ICP) GN=mshD PE=3
SV=1
Length = 310
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 84 SLKSCGKNVAFLWCPSHT-----GISGNEI-VDRATRQLDGAEIVNLSSPADLI--PVGK 135
SL++ G + F W P H+ + G DRA RQL + PA I P +
Sbjct: 104 SLETLGPHEIFAWVPRHSRQVIDALEGLGFRADRAVRQLRRPLPLESDHPARPIDCPPFR 163
Query: 136 KYLLEKWQKSWTELINNKLKRIKPTIGPWNVSDCNSRYEES 176
+ + + +W E +NN+ P G W++ +R ES
Sbjct: 164 TFRPGEDEDAWLE-VNNRAFAWHPDQGDWDLETLLARERES 203
>sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate D205) GN=gag-pol PE=3 SV=3
Length = 1465
Score = 35.0 bits (79), Expect = 0.45, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 32 AELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTTIPLIAHILNTWYSLKSCG 89
AEL A F L + P VN I+ DS + IA + T P++A I+ ++
Sbjct: 1086 AELEA--FALALTDSEPQVN--IIVDSQYVMGIIAAQPTETESPIVAKIIEEMIKKEA-- 1139
Query: 90 KNVAFLWCPSHTGISGNEIVDRATRQ 115
V W P+H G+ GN+ VD Q
Sbjct: 1140 --VYVGWVPAHKGLGGNQEVDHLVSQ 1163
>sp|A2C101|CHLB_PROM1 Light-independent protochlorophyllide reductase subunit B
OS=Prochlorococcus marinus (strain NATL1A) GN=chlB PE=3
SV=1
Length = 525
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 163 PWNVSDCNSRYEESISWSGNKCFIDHYSHPYLKVLP---FNMFKQSYKYL 209
P +V D +RY + W G D + HP + L MFK ++++
Sbjct: 388 PMHVQDVPARYSPQMGWEGANVIFDDWVHPLMMGLEEHLIGMFKHDFEFV 437
>sp|Q46GN4|CHLB_PROMT Light-independent protochlorophyllide reductase subunit B
OS=Prochlorococcus marinus (strain NATL2A) GN=chlB PE=3
SV=1
Length = 525
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 163 PWNVSDCNSRYEESISWSGNKCFIDHYSHPYLKVLP---FNMFKQSYKYL 209
P +V D +RY + W G D + HP + L MFK ++++
Sbjct: 388 PMHVQDVPARYSPQMGWEGANVIFDDWVHPLMMGLEEHLIGMFKHDFEFV 437
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 34.3 bits (77), Expect = 0.92, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 32 AELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTTIPLIAHILNTWYSLKSCG 89
AEL AI L +R +VN IV DS AL I + + L+ I+
Sbjct: 1062 AELQAIQLALQD--SRSEVN--IVTDSQYALGIIQAQPDRSEAELVNQIIEQLIK----K 1113
Query: 90 KNVAFLWCPSHTGISGNEIVDR 111
+ V W P+H GI GNE VD+
Sbjct: 1114 EKVYLSWVPAHKGIGGNEQVDK 1135
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 33.9 bits (76), Expect = 0.97, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 1 GSKTLQNTSCAVYAGGTTKSYILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMS 60
G + + + V + G TK L + AE +AI L+ +++ VN IV DS
Sbjct: 627 GKQNGEGIAAYVTSNGRTKQKRLGPVTHQ-VAERMAIQMALEDTRDK-QVN--IVTDSYY 682
Query: 61 ALTSIAN-------KNTTIPLIAHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRAT 113
+I +N P+I +I + V F W P H GI GN++ D A
Sbjct: 683 CWKNITEGLGLEGPQNPWWPIIQNIREK--------EIVYFAWVPGHKGIYGNQLADEAA 734
Query: 114 R 114
+
Sbjct: 735 K 735
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 33.9 bits (76), Expect = 1.00, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 32 AELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTTIPLIAHILNTWYSLKSCG 89
AEL AI+ L ++ DVN IV DS A+ I ++ + L++ I+
Sbjct: 1074 AELQAILMALQ--ESGRDVN--IVTDSQYAMGIIHSQPDKSESELVSQIIEELIK----K 1125
Query: 90 KNVAFLWCPSHTGISGNEIVDR 111
+ V W P+H GI GNE VD+
Sbjct: 1126 ERVYLSWVPAHKGIGGNEQVDK 1147
>sp|A2C7T5|CHLB_PROM3 Light-independent protochlorophyllide reductase subunit B
OS=Prochlorococcus marinus (strain MIT 9303) GN=chlB
PE=3 SV=1
Length = 536
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 163 PWNVSDCNSRYEESISWSGNKCFIDHYSHPYLKVLP---FNMFKQSYKYL 209
P +V D +RY + W G D + HP + L MF+ ++++
Sbjct: 394 PMHVQDVPARYSPQMGWEGANVIFDSWVHPLMMGLEEHLIGMFRHDFEFV 443
>sp|Q7V6E8|CHLB_PROMM Light-independent protochlorophyllide reductase subunit B
OS=Prochlorococcus marinus (strain MIT 9313) GN=chlB
PE=3 SV=1
Length = 536
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 163 PWNVSDCNSRYEESISWSGNKCFIDHYSHPYLKVLP---FNMFKQSYKYL 209
P +V D +RY + W G D + HP + L MF+ ++++
Sbjct: 394 PMHVQDVPARYSPQMGWEGANVIFDSWVHPLMMGLEEHLIGMFRHDFEFV 443
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 32 AELLAIVFCL-DSVKNRPDVNTLIVCDS---MSALTSIANKNTTIPLIAHILNTWYSLKS 87
AEL A+ L DS +N VN IV DS M+ LT+ ++ + PL+ I+
Sbjct: 1086 AELTAVKMALEDSGEN---VN--IVTDSQYVMNILTACPQESNS-PLVEQIIQALMK--- 1136
Query: 88 CGKNVAFLWCPSHTGISGNEIVDR 111
+ V W P+H GI GN +D+
Sbjct: 1137 -KRQVYLQWVPAHKGIGGNTEIDK 1159
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 32 AELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTTIPLIAHILNTWYSLKSCGKN 91
AEL AI L +V IV DS AL I + T + I+N +
Sbjct: 1063 AELQAIQLALQD----SEVEVNIVTDSQYALGIIQGQPDTSE--SEIVNQIIEELIKKEK 1116
Query: 92 VAFLWCPSHTGISGNEIVDR 111
V W P+H GI GNE +D+
Sbjct: 1117 VYLSWVPAHKGIGGNEQIDK 1136
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 32.3 bits (72), Expect = 3.4, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 54 IVCDSMSALTSIANKNTTI--PLIAHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDR 111
IV DS + +A++ T P++ I+ L + + W P+H GI GNE +D+
Sbjct: 1091 IVTDSQYVVGILASRPTETDHPIVKEII----ELMKGKEKIYLSWLPAHKGIGGNEQIDK 1146
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 32.3 bits (72), Expect = 3.4, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 1 GSKTLQNTSCAVYAGGTTKSYILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMS 60
G + + + V + G TK L + AE +AI L+ +++ VN IV DS
Sbjct: 628 GKQNGEGIAAYVTSNGRTKQKRLGPVTHQ-VAERMAIQMALEDTRDK-QVN--IVTDSYY 683
Query: 61 ALTSIAN-------KNTTIPLIAHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRAT 113
+I ++ P+I +I + V F W P H GI GN++ D A
Sbjct: 684 CWKNITEGLGLEGPQSPWWPIIQNIREK--------EIVYFAWVPGHKGICGNQLADEAA 735
Query: 114 R 114
+
Sbjct: 736 K 736
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 32.3 bits (72), Expect = 3.4, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 1 GSKTLQNTSCAVYAGGTTKSYILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMS 60
G + + + V + G TK L + AE +AI L+ +++ VN IV DS
Sbjct: 628 GKQNGEGIAAYVTSNGRTKQKRLGPVTHQ-VAERMAIQMALEDTRDK-QVN--IVTDSYY 683
Query: 61 ALTSIAN-------KNTTIPLIAHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRAT 113
+I ++ P+I +I + V F W P H GI GN++ D A
Sbjct: 684 CWKNITEGLGLEGPQSPWWPIIQNIREK--------EIVYFAWVPGHKGICGNQLADEAA 735
Query: 114 R 114
+
Sbjct: 736 K 736
>sp|P98174|FGD1_HUMAN FYVE, RhoGEF and PH domain-containing protein 1 OS=Homo sapiens
GN=FGD1 PE=1 SV=2
Length = 961
Score = 32.0 bits (71), Expect = 4.3, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 91 NVAFLWCPSHTGISGNEIVDRATRQLDGAEI---VNLSSPADLIPVGKKYLLE------K 141
N L+C + G + RA +DG E+ NL+ P + GK+ LE +
Sbjct: 616 NDRLLYCVPRLRLLGQKFSVRARIDVDGMELKESSNLNLPRTFLVSGKQRSLELQARTEE 675
Query: 142 WQKSWTELINNKLKRIKPTIGPWNVSDCNSRYEE 175
+K W + IN+ L + + T+ + + + +R +E
Sbjct: 676 EKKDWVQAINSTLLKHEQTLETFKLLNSTNREDE 709
>sp|Q76634|POL_HV2UC Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate UC1) GN=gag-pol PE=3 SV=3
Length = 1471
Score = 32.0 bits (71), Expect = 4.4, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 32 AELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTTIPLIAHILNTWYSLKSCG 89
AEL A L + P VN I+ DS + +A + T PL+ I+ ++
Sbjct: 1087 AELEAFALALQD--SGPQVN--IIVDSQYVMGIVAGQPTETESPLVNQIIEEMIKKEA-- 1140
Query: 90 KNVAFLWCPSHTGISGNEIVDRATRQ 115
+ W P+H G+ GN+ VD Q
Sbjct: 1141 --IYVGWVPAHRGLGGNQEVDHLVSQ 1164
>sp|P52734|FGD1_MOUSE FYVE, RhoGEF and PH domain-containing protein 1 OS=Mus musculus
GN=Fgd1 PE=1 SV=2
Length = 960
Score = 32.0 bits (71), Expect = 4.4, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 91 NVAFLWCPSHTGISGNEIVDRATRQLDGAEI---VNLSSPADLIPVGKKYLLE------K 141
N L+C + G + RA +DG E+ NL+ P + GK+ LE +
Sbjct: 615 NDRLLYCVPRLRLLGQKFSVRARIDVDGMELKESSNLNMPRTFLVSGKQRSLELQARTEE 674
Query: 142 WQKSWTELINNKLKRIKPTIGPWNVSDCNSRYEE 175
+K W + IN+ L + + T+ + + + +R +E
Sbjct: 675 EKKDWVQAINSTLLKHEQTLETFKLLNSTNRDDE 708
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,637,866
Number of Sequences: 539616
Number of extensions: 3516059
Number of successful extensions: 8372
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 8368
Number of HSP's gapped (non-prelim): 44
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)