Query psy7660
Match_columns 250
No_of_seqs 282 out of 1356
Neff 7.2
Searched_HMMs 29240
Date Sat Aug 17 00:10:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 6.7E-22 2.3E-26 160.6 12.7 107 8-119 26-151 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 4E-21 1.4E-25 155.9 12.0 107 8-119 28-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.8 4.5E-21 1.5E-25 154.2 10.7 105 7-119 19-144 (146)
4 2kq2_A Ribonuclease H-related 99.8 1.7E-21 5.9E-26 157.4 5.0 118 1-122 13-140 (147)
5 1jl1_A Ribonuclease HI; RNAse 99.8 2.1E-20 7.2E-25 152.2 11.0 107 8-122 20-146 (155)
6 3p1g_A Xenotropic murine leuke 99.8 2.7E-20 9.3E-25 153.4 10.9 110 6-122 37-159 (165)
7 2e4l_A Ribonuclease HI, RNAse 99.8 4.2E-20 1.4E-24 150.9 10.8 104 8-119 22-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.8 1.4E-19 4.8E-24 149.0 8.6 108 7-121 23-150 (166)
9 3hst_B Protein RV2228C/MT2287; 99.8 4.3E-18 1.5E-22 135.0 10.7 108 7-119 18-133 (141)
10 2lsn_A Reverse transcriptase; 99.7 9.8E-18 3.3E-22 138.1 12.3 106 8-118 28-162 (165)
11 3u3g_D Ribonuclease H, RNAse H 99.7 6E-18 2E-22 133.6 9.1 108 7-119 18-137 (140)
12 1mu2_A HIV-2 RT; HIV-2 reverse 99.7 2.2E-17 7.6E-22 159.0 13.0 101 8-117 452-555 (555)
13 2zd1_A Reverse transcriptase/r 99.7 2.9E-17 9.8E-22 158.3 11.3 100 8-116 455-557 (557)
14 2ehg_A Ribonuclease HI; RNAse 99.7 8.7E-17 3E-21 129.3 10.6 105 6-119 16-134 (149)
15 1zbf_A Ribonuclease H-related 99.1 6.3E-11 2.2E-15 95.0 5.2 106 3-111 21-139 (142)
16 4htu_A Ribonuclease H, RNAse H 98.8 2.3E-08 7.8E-13 79.1 9.2 87 2-89 14-113 (134)
17 2fr5_A Cytidine deaminase; tet 79.6 4.2 0.00014 31.9 6.2 54 5-59 35-92 (146)
18 1uwz_A Cytidine deaminase; CDD 70.5 11 0.00039 28.8 6.5 52 6-58 24-79 (136)
19 2nx8_A TRNA-specific adenosine 67.6 7.9 0.00027 31.2 5.2 53 5-57 35-91 (179)
20 2d30_A Cytidine deaminase; pur 67.6 13 0.00044 28.9 6.2 53 6-59 33-89 (141)
21 2b3j_A TRNA adenosine deaminas 65.4 13 0.00045 29.2 6.0 53 5-57 26-82 (159)
22 2a8n_A Cytidine and deoxycytid 65.1 8.4 0.00029 29.7 4.7 52 5-56 23-78 (144)
23 1wkq_A Guanine deaminase; doma 64.9 10 0.00034 30.2 5.2 53 5-57 31-87 (164)
24 1wwr_A TRNA adenosine deaminas 64.8 10 0.00035 30.3 5.3 53 5-57 42-98 (171)
25 1r5t_A Cytidine deaminase; zin 62.8 19 0.00065 27.8 6.4 54 5-59 31-89 (142)
26 3mpz_A Cytidine deaminase; ssg 57.1 22 0.00075 27.9 5.8 52 6-58 46-101 (150)
27 2z3g_A Blasticidin-S deaminase 56.9 21 0.00071 27.1 5.6 53 5-58 26-80 (130)
28 1z3a_A TRNA-specific adenosine 56.7 14 0.00049 29.3 4.8 52 5-56 28-83 (168)
29 3dmo_A Cytidine deaminase; str 52.9 26 0.00089 27.1 5.5 53 6-58 32-89 (138)
30 1rw3_A POL polyprotein; RNA an 51.4 4.7 0.00016 37.0 1.2 43 25-68 385-428 (455)
31 3r2n_A Cytidine deaminase; str 50.9 32 0.0011 26.5 5.8 53 5-58 30-86 (138)
32 3dh1_A TRNA-specific adenosine 45.7 28 0.00095 28.2 4.9 41 5-45 45-89 (189)
33 2g84_A Cytidine and deoxycytid 32.0 1.2E+02 0.0042 24.4 6.8 52 6-57 48-110 (197)
34 2lnd_A De novo designed protei 31.8 80 0.0027 22.2 4.8 46 76-122 38-83 (112)
35 3b8f_A Putative blasticidin S 30.5 76 0.0026 24.3 5.0 51 7-58 24-78 (142)
36 2hxv_A Diaminohydroxyphosphori 28.4 84 0.0029 27.8 5.6 38 5-42 35-72 (360)
37 2i0f_A 6,7-dimethyl-8-ribityll 27.1 76 0.0026 24.9 4.5 42 72-115 24-66 (157)
38 2hvw_A Deoxycytidylate deamina 26.7 1E+02 0.0035 24.7 5.3 51 5-57 60-129 (184)
39 2bhu_A Maltooligosyltrehalose 26.6 63 0.0022 30.7 4.7 73 32-108 141-225 (602)
40 1ctt_A Cytidine deaminase; hyd 25.8 85 0.0029 27.2 4.9 54 5-58 208-266 (294)
41 1j0h_A Neopullulanase; beta-al 25.1 84 0.0029 29.5 5.2 72 32-110 173-257 (588)
42 1wzl_A Alpha-amylase II; pullu 25.1 81 0.0028 29.6 5.1 68 32-106 170-250 (585)
43 4aef_A Neopullulanase (alpha-a 23.7 91 0.0031 29.6 5.2 68 32-105 236-315 (645)
44 1ea9_C Cyclomaltodextrinase; h 23.3 53 0.0018 30.9 3.5 72 32-105 169-248 (583)
45 1kn6_A Prohormone convertase 1 22.1 33 0.0011 24.4 1.3 13 105-117 22-34 (90)
46 1ua7_A Alpha-amylase; beta-alp 21.5 75 0.0026 28.3 3.9 30 76-105 75-104 (422)
47 4aio_A Limit dextrinase; hydro 21.2 86 0.0029 30.6 4.6 32 75-106 378-409 (884)
48 2c92_A 6,7-dimethyl-8-ribityll 21.1 98 0.0034 24.4 4.0 41 72-114 29-71 (160)
49 2g6v_A Riboflavin biosynthesis 20.9 88 0.003 28.2 4.3 40 5-44 51-90 (402)
50 3m07_A Putative alpha amylase; 20.2 94 0.0032 29.6 4.5 33 76-108 203-235 (618)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.87 E-value=6.7e-22 Score=160.65 Aligned_cols=107 Identities=22% Similarity=0.280 Sum_probs=86.7
Q ss_pred eEEEEEECCe---eEEEecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhcCC---------C-----
Q psy7660 8 TSCAVYAGGT---TKSYILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKN---------T----- 70 (250)
Q Consensus 8 ~G~g~v~~~~---~~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~~~---------~----- 70 (250)
.|+|+|+.+. .++..+...++++.|||.|+..||+.+.+.+..+|.|+|||+++++.|..+. .
T Consensus 26 aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~ 105 (154)
T 2qkb_A 26 AGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKE 105 (154)
T ss_dssp EEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSB
T ss_pred EEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhhhhhHHHHHhccccccCCCc
Confidence 7999987542 3556676679999999999999999998877899999999999999998731 1
Q ss_pred --chHHHHHHHHHHHHHHhCCCceEEEeccCCCCCccchHHhHHHHhhhcc
Q psy7660 71 --TIPLIAHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRATRQLDGA 119 (250)
Q Consensus 71 --~~~~~~~i~~~~~~l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a~~~ 119 (250)
..+++++|. .+.. +..|.|.|||||+|++|||.||+|||+|+..
T Consensus 106 ~~n~~l~~~i~----~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 106 VINKEDFVALE----RLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp CTTHHHHHHHH----HHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHH----HHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 134444444 3333 5679999999999999999999999999864
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.85 E-value=4e-21 Score=155.94 Aligned_cols=107 Identities=25% Similarity=0.266 Sum_probs=80.1
Q ss_pred eEEEEEECCe-eEEEecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhcCC-----------CchHHH
Q psy7660 8 TSCAVYAGGT-TKSYILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKN-----------TTIPLI 75 (250)
Q Consensus 8 ~G~g~v~~~~-~~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~~~-----------~~~~~~ 75 (250)
.|+|++..+. ...+.+ ..+|++.|||.|+..||+.+ ..+|.|+|||+++++.|+++. .+.++.
T Consensus 28 ~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~ 102 (150)
T 3qio_A 28 GKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVK 102 (150)
T ss_dssp EEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHHHHHHHCC------------
T ss_pred eEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccc
Confidence 6778777543 333333 57899999999999999985 489999999999999998861 122221
Q ss_pred -HHHHHHHHHHHhCCCceEEEeccCCCCCccchHHhHHHHhhhcc
Q psy7660 76 -AHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRATRQLDGA 119 (250)
Q Consensus 76 -~~i~~~~~~l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a~~~ 119 (250)
.++++.+..+..++..|.|.|||||+|++|||.||+||++|+..
T Consensus 103 n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 103 NVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred cHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 23333333333567899999999999999999999999999864
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.85 E-value=4.5e-21 Score=154.25 Aligned_cols=105 Identities=17% Similarity=0.081 Sum_probs=80.6
Q ss_pred ceEEEEEEC--Cee--EEEecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhc-CC------------
Q psy7660 7 NTSCAVYAG--GTT--KSYILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIAN-KN------------ 69 (250)
Q Consensus 7 ~~G~g~v~~--~~~--~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~-~~------------ 69 (250)
..|+|+|+. +.. .+..+ ..+|++.|||.|++.||+.+.+ ..+|.|+|||+++++.|.. +.
T Consensus 19 ~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~ 95 (146)
T 3h08_A 19 KGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAA 95 (146)
T ss_dssp EEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHSSHHHHHHHTTCC---
T ss_pred ceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHHHHHHHHHHCCCccCC
Confidence 378888763 322 22233 3688999999999999999976 5899999999999999988 20
Q ss_pred ----CchHHHHHHHHHHHHHHhCCCceEEEeccCCCCCccchHHhHHHHhhhcc
Q psy7660 70 ----TTIPLIAHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRATRQLDGA 119 (250)
Q Consensus 70 ----~~~~~~~~i~~~~~~l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a~~~ 119 (250)
..++++++|..++.. ..|.|.|||||+|++|||.||+|||+|+..
T Consensus 96 ~~~v~n~~l~~~~~~~~~~-----~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 96 KKPVENIDLWQEILKLTTL-----HRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp -CCCTTHHHHHHHHHHHHH-----SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhh-----CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 125566666554432 469999999999999999999999999853
No 4
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.83 E-value=1.7e-21 Score=157.43 Aligned_cols=118 Identities=13% Similarity=0.055 Sum_probs=89.5
Q ss_pred CCCCCCceEEEEEE--CCee--EEE-ec--CC--CCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhcCCC-
Q psy7660 1 GSKTLQNTSCAVYA--GGTT--KSY-IL--NN--INSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNT- 70 (250)
Q Consensus 1 gS~~~~~~G~g~v~--~~~~--~~~-~l--~~--~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~~~~- 70 (250)
||..++..|+|+|+ .+.. .+. +. +. .++++.|||.|+..||+.+.+.+. +|.|+|||+.+.+.+.+.+.
T Consensus 13 Gs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~~w~~~~w~~ 91 (147)
T 2kq2_A 13 GSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIAFWATGEWKA 91 (147)
T ss_dssp CCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHHHHTTSSSSC
T ss_pred CCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHhCCCcc
Confidence 56666678999886 3332 333 33 22 368999999999999999877666 99999999999888877664
Q ss_pred chHHHHHHHHHHHHHHhCCCceEEEeccCCCCCccchHHhHHHHhhhccccc
Q psy7660 71 TIPLIAHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRATRQLDGAEIV 122 (250)
Q Consensus 71 ~~~~~~~i~~~~~~l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a~~~~~~ 122 (250)
..+....+.+.+.+|.. .|.|.|||||+|++|||.||+|||+|+....+
T Consensus 92 ~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 92 KNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp CHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred CCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 34444455555555533 89999999999999999999999999975543
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.83 E-value=2.1e-20 Score=152.15 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=82.2
Q ss_pred eEEEEEEC--Cee--EEEecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhcC--------C-C----
Q psy7660 8 TSCAVYAG--GTT--KSYILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--------N-T---- 70 (250)
Q Consensus 8 ~G~g~v~~--~~~--~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~~--------~-~---- 70 (250)
.|+|+|+. +.. .+..+ ..+|++.|||.|+..||+.+.+ ..+|.|+|||+++++.|..+ + .
T Consensus 20 ~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~ 96 (155)
T 1jl1_A 20 GGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKK 96 (155)
T ss_dssp EEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSC
T ss_pred eEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHHHHHHHhhcccccccCC
Confidence 78888863 322 22233 4678999999999999999976 37999999999999999973 1 1
Q ss_pred ---chHHHHHHHHHHHHHHhCCCceEEEeccCCCCCccchHHhHHHHhhhccccc
Q psy7660 71 ---TIPLIAHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRATRQLDGAEIV 122 (250)
Q Consensus 71 ---~~~~~~~i~~~~~~l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a~~~~~~ 122 (250)
..++.+.| ..+.. ...|.|.|||||+|++|||.||+||++|+..+.+
T Consensus 97 ~v~n~~l~~~i----~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 97 PVKNVDLWQRL----DAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp BCTTHHHHHHH----HHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred ccCCHHHHHHH----HHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 13444444 44433 4689999999999999999999999999976554
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.83 E-value=2.7e-20 Score=153.37 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=82.3
Q ss_pred CceEEEEEE--CCeeEEE-ecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhcCCC-----chHHHHH
Q psy7660 6 QNTSCAVYA--GGTTKSY-ILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNT-----TIPLIAH 77 (250)
Q Consensus 6 ~~~G~g~v~--~~~~~~~-~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~~~~-----~~~~~~~ 77 (250)
|..|+|+++ .+..+.+ ++...++++.||+.|+..||+.+ ...+|.|+|||+++++.|-.... ..+++++
T Consensus 37 G~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~ 113 (165)
T 3p1g_A 37 GQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVHSEGREIKNKNEILA 113 (165)
T ss_dssp TEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHH
T ss_pred CceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcccCCCcccCHHHHHH
Confidence 336777654 3333322 45678899999999999999998 36899999999999999932122 2444444
Q ss_pred HHHHHHHHHhCCCceEEEeccCCCC-----CccchHHhHHHHhhhccccc
Q psy7660 78 ILNTWYSLKSCGKNVAFLWCPSHTG-----ISGNEIVDRATRQLDGAEIV 122 (250)
Q Consensus 78 i~~~~~~l~~~g~~V~~~WVPgH~g-----i~gNe~AD~lAk~a~~~~~~ 122 (250)
+.. .+ ..+..|.|.|||||+| ++|||.||+|||+|+.....
T Consensus 114 l~~---~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~~ 159 (165)
T 3p1g_A 114 LLK---AL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVL 159 (165)
T ss_dssp HHH---HT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH---HH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCCC
Confidence 432 23 3578999999999999 99999999999999975443
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.82 E-value=4.2e-20 Score=150.89 Aligned_cols=104 Identities=20% Similarity=0.266 Sum_probs=80.2
Q ss_pred eEEEEEEC--Cee--EEEecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhc--------CCC-----
Q psy7660 8 TSCAVYAG--GTT--KSYILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIAN--------KNT----- 70 (250)
Q Consensus 8 ~G~g~v~~--~~~--~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~--------~~~----- 70 (250)
.|+|+|+. +.. .+..+ ..++++.|||.|+..||+.+.+. .+|.|+|||+++++.|.. .+.
T Consensus 22 ~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~ 98 (158)
T 2e4l_A 22 GGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRT 98 (158)
T ss_dssp EEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSS
T ss_pred EEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHHHHHHHHHHHccccccCCC
Confidence 78888863 322 22233 35789999999999999998653 899999999999999988 221
Q ss_pred ---chHHHHHHHHHHHHHHhCCCceEEEeccCCCCCccchHHhHHHHhhhcc
Q psy7660 71 ---TIPLIAHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRATRQLDGA 119 (250)
Q Consensus 71 ---~~~~~~~i~~~~~~l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a~~~ 119 (250)
..++.+.|. .+.. +..|.|.|||||+|++|||.||+||++|+..
T Consensus 99 ~v~n~~l~~~i~----~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 99 PVKNVDLWKRLD----KAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp BCTTHHHHHHHH----HHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred cccCHHHHHHHH----HHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 234444443 3433 4689999999999999999999999999976
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.79 E-value=1.4e-19 Score=149.02 Aligned_cols=108 Identities=21% Similarity=0.147 Sum_probs=81.1
Q ss_pred ceEEEEEECC--eeEEEe-cCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhc----------CCC---
Q psy7660 7 NTSCAVYAGG--TTKSYI-LNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIAN----------KNT--- 70 (250)
Q Consensus 7 ~~G~g~v~~~--~~~~~~-l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~----------~~~--- 70 (250)
..|+|+|+.+ ....+. ....+|++.|||.|++.||+.+.+. .+|.|+|||+++++.|.+ +..
T Consensus 23 ~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g 100 (166)
T 1ril_A 23 PGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEG 100 (166)
T ss_dssp EEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTS
T ss_pred CEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhhhHHHHHHhcccccccC
Confidence 3788888742 222111 1246789999999999999988663 589999999999999998 211
Q ss_pred ----chHHHHHHHHHHHHHHhCCCceEEEeccCCCCCccchHHhHHHHhhhcccc
Q psy7660 71 ----TIPLIAHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRATRQLDGAEI 121 (250)
Q Consensus 71 ----~~~~~~~i~~~~~~l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a~~~~~ 121 (250)
.+++++.|. .+.. ...|.|.|||||+|++|||.||+|||+|+....
T Consensus 101 ~~v~n~~l~~~i~----~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 101 KPVKNRDLWEALL----LAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SBCTTHHHHHHHH----HHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred CccCcHHHHHHHH----HHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 134444444 3433 368999999999999999999999999997543
No 9
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.75 E-value=4.3e-18 Score=135.01 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=86.0
Q ss_pred ceEEEEEEC--C-e----eEEEecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhcCCC-chHHHHHH
Q psy7660 7 NTSCAVYAG--G-T----TKSYILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNT-TIPLIAHI 78 (250)
Q Consensus 7 ~~G~g~v~~--~-~----~~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~~~~-~~~~~~~i 78 (250)
..|+|+++. + . ..+..+ ..++++.||+.|+..||+.+.+.+..+|.|+|||+++++.+.+.+. .++....+
T Consensus 18 ~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~ 96 (141)
T 3hst_B 18 PAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKL 96 (141)
T ss_dssp EEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHTTSSCCCSHHHHHH
T ss_pred CcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHHhCCcccCCHHHHHH
Confidence 478888763 2 1 122223 3789999999999999999998778999999999999999999654 44444555
Q ss_pred HHHHHHHHhCCCceEEEeccCCCCCccchHHhHHHHhhhcc
Q psy7660 79 LNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRATRQLDGA 119 (250)
Q Consensus 79 ~~~~~~l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a~~~ 119 (250)
.+.+..+..++..|.|.|||+ ++|+.||+|||+|+..
T Consensus 97 ~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 97 YVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp HHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 666667777788999999996 7999999999999864
No 10
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.75 E-value=9.8e-18 Score=138.05 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=78.2
Q ss_pred eEEEEEEC--C--ee--EEEec-CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhcCC---------C-
Q psy7660 8 TSCAVYAG--G--TT--KSYIL-NNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKN---------T- 70 (250)
Q Consensus 8 ~G~g~v~~--~--~~--~~~~l-~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~~~---------~- 70 (250)
.|+|+|+. + .. ..+.. ....+.+.||+.|+..||+.+++.+ .+|.|+|||+++++.|..+. .
T Consensus 28 aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~ 106 (165)
T 2lsn_A 28 AGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDSFYVAESANKELPYWKSNGFVNN 106 (165)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESCHHHHHHHHTHHHHHHHTTSCSC
T ss_pred EEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeChHHHHhhhhhhhhhheecccccc
Confidence 78998862 2 12 23333 3567888999999999999887643 57999999999999997531 1
Q ss_pred ------chHHHHHHHHHHHHHHhCCCceEEEeccCCCCC------ccchHHhHHHHhhhc
Q psy7660 71 ------TIPLIAHILNTWYSLKSCGKNVAFLWCPSHTGI------SGNEIVDRATRQLDG 118 (250)
Q Consensus 71 ------~~~~~~~i~~~~~~l~~~g~~V~~~WVPgH~gi------~gNe~AD~lAk~a~~ 118 (250)
..++.+++.+ +......|.|.|||||+|+ +|||.||+||++|+.
T Consensus 107 ~~~pVkN~dL~~~l~~----~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 107 KKKPLKHISKWKSIAE----CLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp SSSCCSSHHHHHHHHH----HHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHH----HHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 2444444443 3344568999999999995 589999999999984
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.74 E-value=6e-18 Score=133.60 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=80.9
Q ss_pred ceEEEEEECC--e-e---EEEecCCCCchHHHHHHHHHHHHHHhhcCCCC----eEEEEeccHHHHHhhhcCCC-chHHH
Q psy7660 7 NTSCAVYAGG--T-T---KSYILNNINSIFTAELLAIVFCLDSVKNRPDV----NTLIVCDSMSALTSIANKNT-TIPLI 75 (250)
Q Consensus 7 ~~G~g~v~~~--~-~---~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~----~i~I~tDS~~al~ai~~~~~-~~~~~ 75 (250)
..|+|+++.+ . . .+..+ ..++++.||+.|+..||+.+.+.+.. +|.|+|||+++++.+.+++. .++-.
T Consensus 18 ~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l 96 (140)
T 3u3g_D 18 PAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYKVKEPTL 96 (140)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTSSCCCCGGG
T ss_pred CcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCCcccCCHHH
Confidence 4888888733 2 1 22222 35799999999999999999886666 99999999999999999764 22222
Q ss_pred HHHHHHHHHH-HhCCCceEEEeccCCCCCccchHHhHHHHhhhcc
Q psy7660 76 AHILNTWYSL-KSCGKNVAFLWCPSHTGISGNEIVDRATRQLDGA 119 (250)
Q Consensus 76 ~~i~~~~~~l-~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a~~~ 119 (250)
..+.+.+..+ ..+...|.|.|||+ ++||.||+|||+|+..
T Consensus 97 ~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 97 KEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEAIDK 137 (140)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHHHHh
Confidence 2333444444 45556899999995 7999999999999853
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.72 E-value=2.2e-17 Score=159.03 Aligned_cols=101 Identities=23% Similarity=0.287 Sum_probs=81.3
Q ss_pred eEEEEEECCe-eEEEecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhcCCC--chHHHHHHHHHHHH
Q psy7660 8 TSCAVYAGGT-TKSYILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNT--TIPLIAHILNTWYS 84 (250)
Q Consensus 8 ~G~g~v~~~~-~~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~~~~--~~~~~~~i~~~~~~ 84 (250)
.|+|++.... .....+ ..+|++.||+.|+..||+. ...++.|+|||++|++.|+++.. ++++.+++.+.+.
T Consensus 452 ~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~~- 525 (555)
T 1mu2_A 452 GKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMI- 525 (555)
T ss_dssp EEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHHH-
T ss_pred ceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcccccccHHHHHHHHHHhc-
Confidence 6788776432 233333 4688999999999999997 46899999999999999999764 5677665554433
Q ss_pred HHhCCCceEEEeccCCCCCccchHHhHHHHhhh
Q psy7660 85 LKSCGKNVAFLWCPSHTGISGNEIVDRATRQLD 117 (250)
Q Consensus 85 l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a~ 117 (250)
.+..|.|.|||||+|++|||.||+||++|+
T Consensus 526 ---~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 526 ---KKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp ---HCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred ---cCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 367899999999999999999999999985
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.71 E-value=2.9e-17 Score=158.34 Aligned_cols=100 Identities=27% Similarity=0.346 Sum_probs=78.6
Q ss_pred eEEEEEECC-eeEEEecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhcCCC--chHHHHHHHHHHHH
Q psy7660 8 TSCAVYAGG-TTKSYILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNT--TIPLIAHILNTWYS 84 (250)
Q Consensus 8 ~G~g~v~~~-~~~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~~~~--~~~~~~~i~~~~~~ 84 (250)
.|+|++..+ ....++. ..+|++.||+.|+..||+.+ ..++.|+|||++|++.|+++.. ++++.+++.+.+.
T Consensus 455 ~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l~- 528 (557)
T 2zd1_A 455 GKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLI- 528 (557)
T ss_dssp EEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHHH-
T ss_pred eEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHHh-
Confidence 677777643 3333333 46889999999999999998 5799999999999999999876 4677766554433
Q ss_pred HHhCCCceEEEeccCCCCCccchHHhHHHHhh
Q psy7660 85 LKSCGKNVAFLWCPSHTGISGNEIVDRATRQL 116 (250)
Q Consensus 85 l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a 116 (250)
. ...|.|.|||||+|++|||.||+||++|
T Consensus 529 --~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 529 --K-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp --H-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred --c-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 2 4589999999999999999999999986
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.69 E-value=8.7e-17 Score=129.30 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=79.6
Q ss_pred CceEE-EEEECC--eeE-EEe--cC---CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhcCCC-c----
Q psy7660 6 QNTSC-AVYAGG--TTK-SYI--LN---NINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNT-T---- 71 (250)
Q Consensus 6 ~~~G~-g~v~~~--~~~-~~~--l~---~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~~~~-~---- 71 (250)
+..|+ |+++.+ ..+ .+. +. ..++++.||+.|+..||+.+.+.+..+|.|+|||+++++.+.+++. .
T Consensus 16 g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~~i~~~w~~~~~~~ 95 (149)
T 2ehg_A 16 GGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRI 95 (149)
T ss_dssp SSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHHHHTTSSCCCCTTH
T ss_pred ChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHHHHhCccccCCHHH
Confidence 45786 877532 222 222 22 3789999999999999999998778899999999999999999864 2
Q ss_pred hHHHHHHHHHHHHHHhCCCceEEEeccCCCCCccchHHhHHHHhhhcc
Q psy7660 72 IPLIAHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRATRQLDGA 119 (250)
Q Consensus 72 ~~~~~~i~~~~~~l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a~~~ 119 (250)
.++..++...+.. . .|.|.|||+| +|+.||+||++|+..
T Consensus 96 ~~l~~~i~~l~~~----~-~v~~~~V~~~----~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 96 IPLYEKAIELKKK----L-NATLIWVPRE----ENKEADRLSRVAYEL 134 (149)
T ss_dssp HHHHHHHHHHHHH----H-TCEEEECCGG----GCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----C-CEEEEEcCCc----ccHHHHHHHHHHHHh
Confidence 3444444444433 3 4999999994 999999999999863
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.10 E-value=6.3e-11 Score=94.96 Aligned_cols=106 Identities=17% Similarity=0.019 Sum_probs=76.0
Q ss_pred CCCCc-eEEEEEECC--eeEEEec-CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhcCCC--------
Q psy7660 3 KTLQN-TSCAVYAGG--TTKSYIL-NNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNT-------- 70 (250)
Q Consensus 3 ~~~~~-~G~g~v~~~--~~~~~~l-~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~~~~-------- 70 (250)
..|++ .|+|+|+.. ....+.. -..+|++.||+.|++.||+.+.+... +|.|+|||+++++.+.+.+.
T Consensus 21 ~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~~~k~~~~~~v 99 (142)
T 1zbf_A 21 QGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDKKAKSTLVRNE 99 (142)
T ss_dssp CSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHTCCCCCCCCST
T ss_pred CCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHcCCccCCCCCCc
Confidence 34444 799999842 2222211 13678999999999999999988666 99999999999999998762
Q ss_pred -chHHHHHHHHHHHHHHhCCCceEEEeccCCCCCccchHHhH
Q psy7660 71 -TIPLIAHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDR 111 (250)
Q Consensus 71 -~~~~~~~i~~~~~~l~~~g~~V~~~WVPgH~gi~gNe~AD~ 111 (250)
..++.+.|..+..-+... .+....|.-|++.-||..||.
T Consensus 100 ~n~dLw~~l~~~~~w~~~~--~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 100 ETALIWKLVDEAEEWLNTH--TYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp TTHHHHHHHHHHHHHHHHC--CCCCCEEECCHHHHCSCTTCC
T ss_pred ccHHHHHHHHHHHHHHhhC--CCceeEEEeccCccCcCcccc
Confidence 246666665555555444 344445566888899999984
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.79 E-value=2.3e-08 Score=79.14 Aligned_cols=87 Identities=18% Similarity=0.050 Sum_probs=58.8
Q ss_pred CCCCCc-eEEEEEE-CC-eeEEE-ecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeccHHHHHhhhcCCC-------
Q psy7660 2 SKTLQN-TSCAVYA-GG-TTKSY-ILNNINSIFTAELLAIVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNT------- 70 (250)
Q Consensus 2 S~~~~~-~G~g~v~-~~-~~~~~-~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~al~ai~~~~~------- 70 (250)
|..|+| .|+|+|+ .+ ..... +-...+|++.||+.|++.||+.+.+.+.. +.|+|||+++++.|.++.-
T Consensus 14 c~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~~~~~kt~~~~~ 92 (134)
T 4htu_A 14 SQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVKDKKAKSTLVRN 92 (134)
T ss_dssp EETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHHHTCCCCCCCCS
T ss_pred cCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHHcCCcccCCCCC
Confidence 345555 7885665 32 22211 11237899999999999999999875544 8999999999999987531
Q ss_pred --chHHHHHHHHHHHHHHhCC
Q psy7660 71 --TIPLIAHILNTWYSLKSCG 89 (250)
Q Consensus 71 --~~~~~~~i~~~~~~l~~~g 89 (250)
..++.+.+..+..-|....
T Consensus 93 vkN~dLw~~ld~~~~~l~~~~ 113 (134)
T 4htu_A 93 EETALIWKLVDEAEEWLNTHT 113 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHHHhCC
Confidence 2466666655555555544
No 17
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=79.57 E-value=4.2 Score=31.89 Aligned_cols=54 Identities=19% Similarity=-0.031 Sum_probs=37.2
Q ss_pred CCceEEEEEECCeeEEEecCCCCc----hHHHHHHHHHHHHHHhhcCCCCeEEEEeccH
Q psy7660 5 LQNTSCAVYAGGTTKSYILNNINS----IFTAELLAIVFCLDSVKNRPDVNTLIVCDSM 59 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~~~s----~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~ 59 (250)
+..||++++..+..+-.+..-+.. ..-||..||..|... -......+.|++|..
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 446999999876655445432222 245999999999975 334567899998863
No 18
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=70.54 E-value=11 Score=28.84 Aligned_cols=52 Identities=12% Similarity=-0.059 Sum_probs=35.6
Q ss_pred CceEEEEEECCeeEEEecCCC-C---chHHHHHHHHHHHHHHhhcCCCCeEEEEecc
Q psy7660 6 QNTSCAVYAGGTTKSYILNNI-N---SIFTAELLAIVFCLDSVKNRPDVNTLIVCDS 58 (250)
Q Consensus 6 ~~~G~g~v~~~~~~~~~l~~~-~---s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS 58 (250)
-.||++++..+..+-.+..-+ . -...||..||..|... -......+.|++|.
T Consensus 24 ~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 24 FQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 359999998665443443322 1 2356999999999976 34456788999886
No 19
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=67.61 E-value=7.9 Score=31.22 Aligned_cols=53 Identities=19% Similarity=0.148 Sum_probs=35.8
Q ss_pred CCceEEEEEECCeeEEEecCCCC----chHHHHHHHHHHHHHHhhcCCCCeEEEEec
Q psy7660 5 LQNTSCAVYAGGTTKSYILNNIN----SIFTAELLAIVFCLDSVKNRPDVNTLIVCD 57 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~~~----s~~~AEl~AI~~AL~~~~~~~~~~i~I~tD 57 (250)
+..||+.+|..+..++.+..... ....||..||..|-+..........++|+-
T Consensus 35 ~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYvT 91 (179)
T 2nx8_A 35 EIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVT 91 (179)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEEC
Confidence 45699999976666655543221 145799999999988765444566777774
No 20
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=67.55 E-value=13 Score=28.86 Aligned_cols=53 Identities=19% Similarity=0.045 Sum_probs=36.8
Q ss_pred CceEEEEEECCeeEEEecCCCC----chHHHHHHHHHHHHHHhhcCCCCeEEEEeccH
Q psy7660 6 QNTSCAVYAGGTTKSYILNNIN----SIFTAELLAIVFCLDSVKNRPDVNTLIVCDSM 59 (250)
Q Consensus 6 ~~~G~g~v~~~~~~~~~l~~~~----s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~ 59 (250)
-.||++++..+..+..+..-+. ...-||-.||..|... -......|.|.+|..
T Consensus 33 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~~ 89 (141)
T 2d30_A 33 FQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADTK 89 (141)
T ss_dssp CCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCCC
Confidence 3699999987766555543222 2345999999999975 234567889999863
No 21
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=65.45 E-value=13 Score=29.17 Aligned_cols=53 Identities=9% Similarity=-0.082 Sum_probs=36.1
Q ss_pred CCceEEEEEECCeeEEEecCCC----CchHHHHHHHHHHHHHHhhcCCCCeEEEEec
Q psy7660 5 LQNTSCAVYAGGTTKSYILNNI----NSIFTAELLAIVFCLDSVKNRPDVNTLIVCD 57 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~~----~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tD 57 (250)
+..||+.+|..+..++.+.... .....||..||..|.+..........++|+.
T Consensus 26 ~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT 82 (159)
T 2b3j_A 26 EVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVT 82 (159)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEEC
Confidence 4569999998655555544322 2245799999999988765545567778764
No 22
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=65.14 E-value=8.4 Score=29.70 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=34.0
Q ss_pred CCceEEEEEECCeeEEEecCCCC----chHHHHHHHHHHHHHHhhcCCCCeEEEEe
Q psy7660 5 LQNTSCAVYAGGTTKSYILNNIN----SIFTAELLAIVFCLDSVKNRPDVNTLIVC 56 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~~~----s~~~AEl~AI~~AL~~~~~~~~~~i~I~t 56 (250)
+..+|+.++.++..++.+..... ....||..||..|.+..........++|+
T Consensus 23 ~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 23 EVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 45699999985555555543221 14569999999998865444445566665
No 23
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=64.95 E-value=10 Score=30.18 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=35.5
Q ss_pred CCceEEEEEECCeeEEEecCCC----CchHHHHHHHHHHHHHHhhcCCCCeEEEEec
Q psy7660 5 LQNTSCAVYAGGTTKSYILNNI----NSIFTAELLAIVFCLDSVKNRPDVNTLIVCD 57 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~~----~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tD 57 (250)
+..+|+.+|..+..++.+.... .-.-.||..||..|-+..........++|+-
T Consensus 31 ~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT 87 (164)
T 1wkq_A 31 GGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTS 87 (164)
T ss_dssp SSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEE
T ss_pred CCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEe
Confidence 5569998887666555544321 1245699999999988754444566777773
No 24
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=64.85 E-value=10 Score=30.33 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=35.4
Q ss_pred CCceEEEEEECCeeEEEecCCCC----chHHHHHHHHHHHHHHhhcCCCCeEEEEec
Q psy7660 5 LQNTSCAVYAGGTTKSYILNNIN----SIFTAELLAIVFCLDSVKNRPDVNTLIVCD 57 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~~~----s~~~AEl~AI~~AL~~~~~~~~~~i~I~tD 57 (250)
+..||+.+|.++..++.+..... ....||..||..|.+..........++|+-
T Consensus 42 ~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYvT 98 (171)
T 1wwr_A 42 EVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVT 98 (171)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEES
T ss_pred CCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEEC
Confidence 45699999985555555443221 135699999999988754445567777763
No 25
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=62.85 E-value=19 Score=27.81 Aligned_cols=54 Identities=20% Similarity=0.094 Sum_probs=36.7
Q ss_pred CCceEEEEEECCeeEEEecCCCC----chHHHHHHHHHHHHHHhhcCC-CCeEEEEeccH
Q psy7660 5 LQNTSCAVYAGGTTKSYILNNIN----SIFTAELLAIVFCLDSVKNRP-DVNTLIVCDSM 59 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~~~----s~~~AEl~AI~~AL~~~~~~~-~~~i~I~tDS~ 59 (250)
+..||++++..+..+..+..-+. ...-||-.||..|...-. .. ...+.|++|..
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~-~~~i~~i~vv~~~~ 89 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGH-RSGWKCMVICGDSE 89 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTC-CSCCCEEEEEESCS
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCC-CCceEEEEEEeCCC
Confidence 44699999987765544543222 234599999999987532 33 77899999863
No 26
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=57.07 E-value=22 Score=27.92 Aligned_cols=52 Identities=13% Similarity=-0.116 Sum_probs=35.7
Q ss_pred CceEEEEEECCeeEEEecCCCCc----hHHHHHHHHHHHHHHhhcCCCCeEEEEecc
Q psy7660 6 QNTSCAVYAGGTTKSYILNNINS----IFTAELLAIVFCLDSVKNRPDVNTLIVCDS 58 (250)
Q Consensus 6 ~~~G~g~v~~~~~~~~~l~~~~s----~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS 58 (250)
-.||+++...|..+-.+..-+.. ..-||-.||..|+..- ......|.|.+|.
T Consensus 46 F~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~i~aiavv~~~ 101 (150)
T 3mpz_A 46 FPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGG-GGRLVALSCVGPD 101 (150)
T ss_dssp CCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred CCEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 35999999988766555432222 2459999999998752 2345677888774
No 27
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=56.94 E-value=21 Score=27.10 Aligned_cols=53 Identities=9% Similarity=-0.065 Sum_probs=35.7
Q ss_pred CCceEEEEEECCeeEEEecCC--CCchHHHHHHHHHHHHHHhhcCCCCeEEEEecc
Q psy7660 5 LQNTSCAVYAGGTTKSYILNN--INSIFTAELLAIVFCLDSVKNRPDVNTLIVCDS 58 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~--~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS 58 (250)
+-.||++++..|..+-.+-.- .....-||..||..|... -......++|++|.
T Consensus 26 ~f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 26 DYSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 345999999877554334332 223456999999999974 23456778888875
No 28
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=56.70 E-value=14 Score=29.29 Aligned_cols=52 Identities=10% Similarity=-0.030 Sum_probs=33.6
Q ss_pred CCceEEEEEECCeeEEEecCCC----CchHHHHHHHHHHHHHHhhcCCCCeEEEEe
Q psy7660 5 LQNTSCAVYAGGTTKSYILNNI----NSIFTAELLAIVFCLDSVKNRPDVNTLIVC 56 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~~----~s~~~AEl~AI~~AL~~~~~~~~~~i~I~t 56 (250)
+..||+.+|..+..++.+.... .....||..||..|.+..........++|+
T Consensus 28 ~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 28 EVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred CCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 4459999886556555554321 123579999999998876444445566665
No 29
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=52.92 E-value=26 Score=27.07 Aligned_cols=53 Identities=15% Similarity=-0.036 Sum_probs=36.7
Q ss_pred CceEEEEEECCeeEEEecCCCCch----HHHHHHHHHHHHHHhhc-CCCCeEEEEecc
Q psy7660 6 QNTSCAVYAGGTTKSYILNNINSI----FTAELLAIVFCLDSVKN-RPDVNTLIVCDS 58 (250)
Q Consensus 6 ~~~G~g~v~~~~~~~~~l~~~~s~----~~AEl~AI~~AL~~~~~-~~~~~i~I~tDS 58 (250)
-.||+++...|..+-.+..-+... .-||-.||..|+..-.. .....|.|.+|.
T Consensus 32 F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~aiavv~~~ 89 (138)
T 3dmo_A 32 FKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGET 89 (138)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEEEESC
T ss_pred CCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcCCCcccEEEEEEEcCC
Confidence 359999999887766555423323 35999999999864211 145678888886
No 30
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=51.41 E-value=4.7 Score=36.97 Aligned_cols=43 Identities=7% Similarity=-0.111 Sum_probs=32.8
Q ss_pred CCCchHHHHHHHHHHHHHHhhc-CCCCeEEEEeccHHHHHhhhcC
Q psy7660 25 NINSIFTAELLAIVFCLDSVKN-RPDVNTLIVCDSMSALTSIANK 68 (250)
Q Consensus 25 ~~~s~~~AEl~AI~~AL~~~~~-~~~~~i~I~tDS~~al~ai~~~ 68 (250)
..-+++..|+.||..|++.... ....++.|+||+. ++..+.+.
T Consensus 385 ~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 385 AGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQP 428 (455)
T ss_dssp SSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TTTTSSST
T ss_pred cccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HHHHhCCC
Confidence 3456788999999999988764 3357899999996 66555543
No 31
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=50.92 E-value=32 Score=26.46 Aligned_cols=53 Identities=15% Similarity=-0.061 Sum_probs=35.3
Q ss_pred CCceEEEEEECCeeEEEecCCCCc----hHHHHHHHHHHHHHHhhcCCCCeEEEEecc
Q psy7660 5 LQNTSCAVYAGGTTKSYILNNINS----IFTAELLAIVFCLDSVKNRPDVNTLIVCDS 58 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~~~s----~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS 58 (250)
+-.||++++..+..+..+..-+.. ..-||-.||..|...- ......|.|.+|.
T Consensus 30 ~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~~ 86 (138)
T 3r2n_A 30 NFPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDGN 86 (138)
T ss_dssp CCCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred CCcEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 346999999887766555432222 2459999999998753 2345667777764
No 32
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=45.68 E-value=28 Score=28.24 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=28.8
Q ss_pred CCceEEEEEECCeeEEEecCC----CCchHHHHHHHHHHHHHHhh
Q psy7660 5 LQNTSCAVYAGGTTKSYILNN----INSIFTAELLAIVFCLDSVK 45 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~----~~s~~~AEl~AI~~AL~~~~ 45 (250)
+..||+.+|..+..++.+... ....-.||+.||..|.+.+.
T Consensus 45 ~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~ 89 (189)
T 3dh1_A 45 EVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCR 89 (189)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHh
Confidence 456999888766666655442 33355799999999987643
No 33
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=31.97 E-value=1.2e+02 Score=24.39 Aligned_cols=52 Identities=19% Similarity=0.120 Sum_probs=32.2
Q ss_pred CceEEEEEEC--CeeEEEecC----CCCchHHHHHHHHHHHHHHhhcCC-----CCeEEEEec
Q psy7660 6 QNTSCAVYAG--GTTKSYILN----NINSIFTAELLAIVFCLDSVKNRP-----DVNTLIVCD 57 (250)
Q Consensus 6 ~~~G~g~v~~--~~~~~~~l~----~~~s~~~AEl~AI~~AL~~~~~~~-----~~~i~I~tD 57 (250)
..+|+.+|.. +..++.+.. ...-...||+.||..|-+.+.... ....++|+-
T Consensus 48 ~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~L~~~~~~g~tlYvT 110 (197)
T 2g84_A 48 GPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLPACELVTS 110 (197)
T ss_dssp CSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTSCCEEEEEE
T ss_pred CCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCCccccccCcCCEEEEEe
Confidence 4589888874 455555543 233456799999999887653221 134566654
No 34
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.81 E-value=80 Score=22.22 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCceEEEeccCCCCCccchHHhHHHHhhhccccc
Q psy7660 76 AHILNTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRATRQLDGAEIV 122 (250)
Q Consensus 76 ~~i~~~~~~l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~a~~~~~~ 122 (250)
+.|.+.+..+...|..+ +.+|-|-+...-||.-.++-|++..-...
T Consensus 38 qdirdiiksmkdngkpl-vvfvngasqndvnefqneakkegvsydvl 83 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPL-VVFVNGASQNDVNEFQNEAKKEGVSYDVL 83 (112)
T ss_dssp HHHHHHHHHHTTCCSCE-EEEECSCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred hhHHHHHHHHHhcCCeE-EEEecCcccccHHHHHHHHHhcCcchhhh
Confidence 45666777787888776 45788888778888888888888754433
No 35
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=30.53 E-value=76 Score=24.26 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=33.1
Q ss_pred ceEEEEEECCeeEEEecCCCC----chHHHHHHHHHHHHHHhhcCCCCeEEEEecc
Q psy7660 7 NTSCAVYAGGTTKSYILNNIN----SIFTAELLAIVFCLDSVKNRPDVNTLIVCDS 58 (250)
Q Consensus 7 ~~G~g~v~~~~~~~~~l~~~~----s~~~AEl~AI~~AL~~~~~~~~~~i~I~tDS 58 (250)
.||++++..+..+-.+..-+. ...-||..||..|...- ......+.|.+|.
T Consensus 24 ~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~G-~~~~~~~~v~~~~ 78 (142)
T 3b8f_A 24 GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKFQ-KKVTHSICLAREN 78 (142)
T ss_dssp EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHHT-CCEEEEEEEEESS
T ss_pred CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHCC-CCcEEEEEEEecC
Confidence 799999987765545543222 23469999999998752 1223566777664
No 36
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=28.40 E-value=84 Score=27.78 Aligned_cols=38 Identities=16% Similarity=-0.051 Sum_probs=27.8
Q ss_pred CCceEEEEEECCeeEEEecCCCCchHHHHHHHHHHHHH
Q psy7660 5 LQNTSCAVYAGGTTKSYILNNINSIFTAELLAIVFCLD 42 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~~~s~~~AEl~AI~~AL~ 42 (250)
+..||+.+|.++..++.+.......-.||..||..|.+
T Consensus 35 ~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a~~ 72 (360)
T 2hxv_A 35 NPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARK 72 (360)
T ss_dssp SCCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHH
T ss_pred CCCEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHHHh
Confidence 55699988876666666655444456899999999853
No 37
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=27.11 E-value=76 Score=24.94 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=29.0
Q ss_pred hHHHHHHH-HHHHHHHhCCCceEEEeccCCCCCccchHHhHHHHh
Q psy7660 72 IPLIAHIL-NTWYSLKSCGKNVAFLWCPSHTGISGNEIVDRATRQ 115 (250)
Q Consensus 72 ~~~~~~i~-~~~~~l~~~g~~V~~~WVPgH~gi~gNe~AD~lAk~ 115 (250)
.++...+. -.++.|...|.+|.+.||||--.+|. .|.++|+.
T Consensus 24 ~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~--aa~~la~~ 66 (157)
T 2i0f_A 24 DDLADALLDGAKAALDEAGATYDVVTVPGALEIPA--TISFALDG 66 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHH--HHHHHHhh
Confidence 34444443 34566778888999999999766654 56777765
No 38
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=26.68 E-value=1e+02 Score=24.69 Aligned_cols=51 Identities=16% Similarity=0.053 Sum_probs=31.8
Q ss_pred CCceEEEEEECCeeEEEecCC---C----------------CchHHHHHHHHHHHHHHhhcCCCCeEEEEec
Q psy7660 5 LQNTSCAVYAGGTTKSYILNN---I----------------NSIFTAELLAIVFCLDSVKNRPDVNTLIVCD 57 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~---~----------------~s~~~AEl~AI~~AL~~~~~~~~~~i~I~tD 57 (250)
+..||+.+|..+..++.+... . .-...||..||..|.+.- ......++|+.
T Consensus 60 ~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~g--~~l~g~tlYvT 129 (184)
T 2hvw_A 60 RAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEG--ISANNTEIYVT 129 (184)
T ss_dssp TCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHHT--CCCTTEEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHcC--CCceeEEEEEC
Confidence 445999888755555443321 1 113579999999987642 23456777764
No 39
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=26.57 E-value=63 Score=30.66 Aligned_cols=73 Identities=14% Similarity=-0.018 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEE--eccHHHHHhhhc-CCCc-------h--HHHHHHHHHHHHHHhCCCceEEEeccC
Q psy7660 32 AELLAIVFCLDSVKNRPDVNTLIV--CDSMSALTSIAN-KNTT-------I--PLIAHILNTWYSLKSCGKNVAFLWCPS 99 (250)
Q Consensus 32 AEl~AI~~AL~~~~~~~~~~i~I~--tDS~~al~ai~~-~~~~-------~--~~~~~i~~~~~~l~~~g~~V~~~WVPg 99 (250)
+-+.+|..-|..+.+.+..-|.+. .++.. -.+ .... . .-..++.++++++.++|..|-+-+|+.
T Consensus 141 G~~~gi~~~L~yl~~lGv~~I~L~Pi~~~~~----~~~wGY~~~~y~~~~~~~Gt~~d~~~lv~~~H~~Gi~VilD~V~N 216 (602)
T 2bhu_A 141 GTYRAAAEKLPYLKELGVTAIQVMPLAAFDG----QRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYN 216 (602)
T ss_dssp CSHHHHHHTHHHHHHHTCCEEEECCCEECSS----SCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECChhhccC----CCCCCcccccCcccCcCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 346788888888887666666553 11110 011 1110 0 013567788888999999999999999
Q ss_pred CCCCccchH
Q psy7660 100 HTGISGNEI 108 (250)
Q Consensus 100 H~gi~gNe~ 108 (250)
|++..+|..
T Consensus 217 H~~~~~~~~ 225 (602)
T 2bhu_A 217 HFGPSGNYL 225 (602)
T ss_dssp CCCSSSCCH
T ss_pred ccccCCccc
Confidence 999877643
No 40
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=25.76 E-value=85 Score=27.23 Aligned_cols=54 Identities=6% Similarity=-0.156 Sum_probs=36.5
Q ss_pred CCceEEEEEECCeeEEEecCC----CCchHHHHHHHHHHHHHHhh-cCCCCeEEEEecc
Q psy7660 5 LQNTSCAVYAGGTTKSYILNN----INSIFTAELLAIVFCLDSVK-NRPDVNTLIVCDS 58 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~----~~s~~~AEl~AI~~AL~~~~-~~~~~~i~I~tDS 58 (250)
+..+|++++..|..+..+-.- .....-||-.||..|...-. ......+.|++|.
T Consensus 208 ~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~ 266 (294)
T 1ctt_A 208 KSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKA 266 (294)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred CCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecC
Confidence 556999999887755444432 22334699999999986421 1245688898886
No 41
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=25.10 E-value=84 Score=29.52 Aligned_cols=72 Identities=17% Similarity=0.040 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEE--eccHHHHHhhhcCCC-----------chHHHHHHHHHHHHHHhCCCceEEEecc
Q psy7660 32 AELLAIVFCLDSVKNRPDVNTLIV--CDSMSALTSIANKNT-----------TIPLIAHILNTWYSLKSCGKNVAFLWCP 98 (250)
Q Consensus 32 AEl~AI~~AL~~~~~~~~~~i~I~--tDS~~al~ai~~~~~-----------~~~~~~~i~~~~~~l~~~g~~V~~~WVP 98 (250)
+-+.+|..-|..+.+.+.+-|.+. .++.+ ..... |. ..++.++++++.++|..|-+-|||
T Consensus 173 G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt--~~df~~lv~~~H~~Gi~VilD~V~ 245 (588)
T 1j0h_A 173 GDLQGIIDHLDYLVDLGITGIYLTPIFRSPS-----NHKYDTADYFEVDPHFGD--KETLKTLIDRCHEKGIRVMLDAVF 245 (588)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCC--HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcccCCC-----CCCcCccccCccCccCCC--HHHHHHHHHHHHHCCCEEEEEECc
Confidence 458888888999888776666554 22211 01111 11 356777888889999999999999
Q ss_pred CCCCCccchHHh
Q psy7660 99 SHTGISGNEIVD 110 (250)
Q Consensus 99 gH~gi~gNe~AD 110 (250)
.|++.....-.|
T Consensus 246 NH~~~~~~~f~~ 257 (588)
T 1j0h_A 246 NHCGYEFAPFQD 257 (588)
T ss_dssp SBCCTTCHHHHH
T ss_pred CcCcccchhHHH
Confidence 999866544333
No 42
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=25.05 E-value=81 Score=29.60 Aligned_cols=68 Identities=12% Similarity=-0.026 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEE--eccHHHHHhhhcCCC-----------chHHHHHHHHHHHHHHhCCCceEEEecc
Q psy7660 32 AELLAIVFCLDSVKNRPDVNTLIV--CDSMSALTSIANKNT-----------TIPLIAHILNTWYSLKSCGKNVAFLWCP 98 (250)
Q Consensus 32 AEl~AI~~AL~~~~~~~~~~i~I~--tDS~~al~ai~~~~~-----------~~~~~~~i~~~~~~l~~~g~~V~~~WVP 98 (250)
+-+.+|..-|..+.+.+.+.|.+. .++.+ .-... +. ..++.++++++.++|..|-+-|||
T Consensus 170 G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~id~~~Gt--~~dfk~lv~~~H~~Gi~VilD~V~ 242 (585)
T 1wzl_A 170 GDLKGVIDRLPYLEELGVTALYFTPIFASPS-----HHKYDTADYLAIDPQFGD--LPTFRRLVDEAHRRGIKIILDAVF 242 (585)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCC--HHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCcccCCC-----CCCcCcccccccCcccCC--HHHHHHHHHHHHHCCCEEEEEEcC
Confidence 357788888998888776666543 12211 01111 11 356778888899999999999999
Q ss_pred CCCCCccc
Q psy7660 99 SHTGISGN 106 (250)
Q Consensus 99 gH~gi~gN 106 (250)
.|++....
T Consensus 243 NH~~~~~~ 250 (585)
T 1wzl_A 243 NHAGDQFF 250 (585)
T ss_dssp SBCCTTSH
T ss_pred CcCCCccH
Confidence 99986543
No 43
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=23.69 E-value=91 Score=29.61 Aligned_cols=68 Identities=15% Similarity=0.007 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEe--ccHHHHHhhhcC-CC--------ch-HHHHHHHHHHHHHHhCCCceEEEeccC
Q psy7660 32 AELLAIVFCLDSVKNRPDVNTLIVC--DSMSALTSIANK-NT--------TI-PLIAHILNTWYSLKSCGKNVAFLWCPS 99 (250)
Q Consensus 32 AEl~AI~~AL~~~~~~~~~~i~I~t--DS~~al~ai~~~-~~--------~~-~~~~~i~~~~~~l~~~g~~V~~~WVPg 99 (250)
+-+.+|..-|..+.+.+..-|.|.- .|. ..+ .. +. .-..++.+++++++++|+.|-+-+||.
T Consensus 236 Gdl~Gi~~kLdYLk~LGvt~I~L~Pif~s~------~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH~~GI~VIlD~V~N 309 (645)
T 4aef_A 236 GDLIGIKEKIDHLVNLGINAIYLTPIFSSL------TYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVILDGVFH 309 (645)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEEES------STTCSSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCHHHHHHhhHHHHHcCCCEEEECCCCCCC------CCCCcCccCCCccCcccCCHHHHHHHHHHhhhcCCEEEEEeccc
Confidence 4588999999999887666655531 111 111 11 00 012467778888899999999999999
Q ss_pred CCCCcc
Q psy7660 100 HTGISG 105 (250)
Q Consensus 100 H~gi~g 105 (250)
|++...
T Consensus 310 Hts~~h 315 (645)
T 4aef_A 310 HTSFFH 315 (645)
T ss_dssp BCCTTS
T ss_pred ccccCC
Confidence 998654
No 44
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=23.35 E-value=53 Score=30.88 Aligned_cols=72 Identities=10% Similarity=-0.013 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEE--eccHH----HHHhhhcCCC--chHHHHHHHHHHHHHHhCCCceEEEeccCCCCC
Q psy7660 32 AELLAIVFCLDSVKNRPDVNTLIV--CDSMS----ALTSIANKNT--TIPLIAHILNTWYSLKSCGKNVAFLWCPSHTGI 103 (250)
Q Consensus 32 AEl~AI~~AL~~~~~~~~~~i~I~--tDS~~----al~ai~~~~~--~~~~~~~i~~~~~~l~~~g~~V~~~WVPgH~gi 103 (250)
+-+.+|..-|..+.+.+.+.|.+. .++.+ ...-.....+ +. ..++.++++++.++|..|-+-|||.|++.
T Consensus 169 Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt--~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 246 (583)
T 1ea9_C 169 GDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGD--KDTLKKLVDLCHERGIRVLLDAVFNHSGR 246 (583)
T ss_dssp CCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCC--HHHHHHHHHHHTTTTCEEEEECCCSBCCT
T ss_pred cCHHHHHHhhHHHHHcCCCEEEECCCccCCCCCCcCcccccccCcccCC--HHHHHHHHHHHHHCCCEEEEEEccccCCC
Confidence 457788888999988777766654 12210 0000000000 11 35677888889999999999999999986
Q ss_pred cc
Q psy7660 104 SG 105 (250)
Q Consensus 104 ~g 105 (250)
..
T Consensus 247 ~~ 248 (583)
T 1ea9_C 247 TF 248 (583)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 45
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=22.09 E-value=33 Score=24.44 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=10.9
Q ss_pred cchHHhHHHHhhh
Q psy7660 105 GNEIVDRATRQLD 117 (250)
Q Consensus 105 gNe~AD~lAk~a~ 117 (250)
|+|.||++|++-=
T Consensus 22 g~~~A~~iA~k~G 34 (90)
T 1kn6_A 22 GQEAASAIAEELG 34 (90)
T ss_dssp THHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcC
Confidence 7899999998653
No 46
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=21.46 E-value=75 Score=28.33 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCceEEEeccCCCCCcc
Q psy7660 76 AHILNTWYSLKSCGKNVAFLWCPSHTGISG 105 (250)
Q Consensus 76 ~~i~~~~~~l~~~g~~V~~~WVPgH~gi~g 105 (250)
.++.++++++.++|..|-+-+||.|++-..
T Consensus 75 ~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~ 104 (422)
T 1ua7_A 75 QEFKEMCAAAEEYGIKVIVDAVINHTTFDY 104 (422)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECCSBCCSCT
T ss_pred HHHHHHHHHHHHCCCEEEEEeccCcccCCc
Confidence 567778888999999999999999987544
No 47
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A
Probab=21.19 E-value=86 Score=30.59 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCceEEEeccCCCCCccc
Q psy7660 75 IAHILNTWYSLKSCGKNVAFLWCPSHTGISGN 106 (250)
Q Consensus 75 ~~~i~~~~~~l~~~g~~V~~~WVPgH~gi~gN 106 (250)
+.++.+++.++.++|..|-+-+||.|++..+.
T Consensus 378 ~~efk~LV~~aH~~GIkVIlDvV~NHts~~h~ 409 (884)
T 4aio_A 378 IIEYRQMVQALNRIGLRVVMDVVYNHLDSSGP 409 (884)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCSCCSS
T ss_pred HHHHHHHHHHHHhcCCceeeeeccccccCCCc
Confidence 45688888999999999999999999976543
No 48
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=21.07 E-value=98 Score=24.38 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=28.0
Q ss_pred hHHHHHHH-HHHHHHHhCCC-ceEEEeccCCCCCccchHHhHHHH
Q psy7660 72 IPLIAHIL-NTWYSLKSCGK-NVAFLWCPSHTGISGNEIVDRATR 114 (250)
Q Consensus 72 ~~~~~~i~-~~~~~l~~~g~-~V~~~WVPgH~gi~gNe~AD~lAk 114 (250)
..+...+. -.++.|...|. +|.+.||||--.+|. .|.+||+
T Consensus 29 ~~I~~~Ll~gA~~~l~~~G~~~i~v~~VPGafEiP~--aak~la~ 71 (160)
T 2c92_A 29 GKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPV--VAQELAR 71 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCCEEEEESSGGGHHH--HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEECCcHHHHHH--HHHHHHh
Confidence 34444433 34566777776 899999999877775 5677775
No 49
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=20.89 E-value=88 Score=28.15 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=28.9
Q ss_pred CCceEEEEEECCeeEEEecCCCCchHHHHHHHHHHHHHHh
Q psy7660 5 LQNTSCAVYAGGTTKSYILNNINSIFTAELLAIVFCLDSV 44 (250)
Q Consensus 5 ~~~~G~g~v~~~~~~~~~l~~~~s~~~AEl~AI~~AL~~~ 44 (250)
+..+|+.+|..+..++.+.......-.||..||..|-+.+
T Consensus 51 ~~~vGaviv~~g~ii~~g~n~~~g~~HAE~~Ai~~a~~~~ 90 (402)
T 2g6v_A 51 NPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKA 90 (402)
T ss_dssp SCCCEEEEEETTEEEEEEECCCTTSCCHHHHHHHHHGGGG
T ss_pred CCCEEEEEEECCEEEEEEeCCCCCccHHHHHHHHHhhHhc
Confidence 4569998888666666665544456689999999885443
No 50
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=20.17 E-value=94 Score=29.60 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCceEEEeccCCCCCccchH
Q psy7660 76 AHILNTWYSLKSCGKNVAFLWCPSHTGISGNEI 108 (250)
Q Consensus 76 ~~i~~~~~~l~~~g~~V~~~WVPgH~gi~gNe~ 108 (250)
.++.+.++++.++|..|-+-+|+.|++..+|-.
T Consensus 203 ~~~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~ 235 (618)
T 3m07_A 203 DDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYL 235 (618)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCH
T ss_pred HHHHHHHHHHHHCCCEEEEeecCccCCCCcccc
Confidence 567778888889999999999999999877654
Done!