BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7662
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BH8|A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE
pdb|1BH9|A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE WITH
BOUND Pcmbs
Length = 45
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 41/45 (91%)
Query: 37 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM 81
+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +
Sbjct: 1 LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 41/45 (91%)
Query: 125 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM 169
+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +
Sbjct: 1 LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45
>pdb|2CW8|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 20 EEEEQDTPVNLP-SGRKRMFSKELRCMMYGFGDDRNPYT 57
EEE D +P G+K F LR + + FG+++ P T
Sbjct: 146 EEETLDIVXTIPVKGKKNFFKGXLRTLRWIFGEEKRPRT 184
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 108 EEEEQDTPVNLP-SGRKRMFSKELRCMMYGFGDDRNPYT 145
EEE D +P G+K F LR + + FG+++ P T
Sbjct: 146 EEETLDIVXTIPVKGKKNFFKGXLRTLRWIFGEEKRPRT 184
>pdb|2CW7|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 20 EEEEQDTPVNLP-SGRKRMFSKELRCMMYGFGDDRNPYT 57
EEE D + +P G+K F LR + + FG+++ P T
Sbjct: 146 EEETLDIVMTIPVKGKKNFFKGMLRTLRWIFGEEKRPRT 184
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 108 EEEEQDTPVNLP-SGRKRMFSKELRCMMYGFGDDRNPYT 145
EEE D + +P G+K F LR + + FG+++ P T
Sbjct: 146 EEETLDIVMTIPVKGKKNFFKGMLRTLRWIFGEEKRPRT 184
>pdb|3TND|A Chain A, Crystal Structure Of Shigella Flexneri Vapbc
Toxin-Antitoxin Complex
pdb|3TND|C Chain C, Crystal Structure Of Shigella Flexneri Vapbc
Toxin-Antitoxin Complex
pdb|3TND|E Chain E, Crystal Structure Of Shigella Flexneri Vapbc
Toxin-Antitoxin Complex
pdb|3TND|G Chain G, Crystal Structure Of Shigella Flexneri Vapbc
Toxin-Antitoxin Complex
Length = 132
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 91 LLKFKSNKNVCVFSFQFEEEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNP------- 143
+LKF + N+C+F+ + + NL G+ + S L ++YG + P
Sbjct: 1 MLKFMLDTNICIFTIKNKPASVRERFNLNQGKMCISSVTLMELIYGAEKSQMPERNLAVI 60
Query: 144 --YTESVDILE-DAVIDFLVDMTQKAMEMGRTGR 174
+ +D+L+ DA Q E+ R GR
Sbjct: 61 EGFVSRIDVLDYDAAAA--THTGQIRAELARQGR 92
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 27.3 bits (59), Expect = 6.8, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 39 SKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTFLSLLKFKSNK 98
S +L C D + + D+L D +++ L M +A+ + PT + L+
Sbjct: 428 SDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLE----- 482
Query: 99 NVCVFSFQ 106
C++SFQ
Sbjct: 483 -ACIYSFQ 489
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
Length = 2060
Score = 27.3 bits (59), Expect = 6.9, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 54 NPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTFLSLLKFKSNKNVCVFSFQFEEEEQD 113
N Y +++ I + VD Q+ + + + PTF +L++ + SF E+
Sbjct: 685 NEYIQTLGIRHISFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSF----EDFH 740
Query: 114 TPVNLPSGRKRMFSKELRCMMYGFG--DDRNPY 144
P+ L R R S + GFG +D PY
Sbjct: 741 QPILLMYSRIRKCSNIVLVAGSGFGGSEDTYPY 773
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,444,519
Number of Sequences: 62578
Number of extensions: 269860
Number of successful extensions: 479
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 11
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)