BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7662
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R9W6|TAF13_PONAB Transcription initiation factor TFIID subunit 13 OS=Pongo abelii
GN=TAF13 PE=2 SV=1
Length = 124
Score = 164 bits (414), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 87/95 (91%)
Query: 122 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIV 181
RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +GR GRVQVEDIV
Sbjct: 28 RKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQGRVQVEDIV 87
Query: 182 FLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE +
Sbjct: 88 FLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 47/52 (90%)
Query: 34 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTG 85
RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +GR G
Sbjct: 28 RKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQG 79
>sp|P61216|TAF13_MOUSE Transcription initiation factor TFIID subunit 13 OS=Mus musculus
GN=Taf13 PE=2 SV=1
Length = 124
Score = 164 bits (414), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 87/95 (91%)
Query: 122 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIV 181
RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +GR GRVQVEDIV
Sbjct: 28 RKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQGRVQVEDIV 87
Query: 182 FLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE +
Sbjct: 88 FLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 47/52 (90%)
Query: 34 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTG 85
RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +GR G
Sbjct: 28 RKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQG 79
>sp|Q15543|TAF13_HUMAN Transcription initiation factor TFIID subunit 13 OS=Homo sapiens
GN=TAF13 PE=1 SV=1
Length = 124
Score = 164 bits (414), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 87/95 (91%)
Query: 122 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIV 181
RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +GR GRVQVEDIV
Sbjct: 28 RKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQGRVQVEDIV 87
Query: 182 FLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE +
Sbjct: 88 FLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 47/52 (90%)
Query: 34 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTG 85
RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +GR G
Sbjct: 28 RKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQG 79
>sp|Q148M7|TAF13_BOVIN Transcription initiation factor TFIID subunit 13 OS=Bos taurus
GN=TAF13 PE=2 SV=1
Length = 124
Score = 164 bits (414), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 87/95 (91%)
Query: 122 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIV 181
RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +GR GRVQVEDIV
Sbjct: 28 RKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQGRVQVEDIV 87
Query: 182 FLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE +
Sbjct: 88 FLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 47/52 (90%)
Query: 34 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTG 85
RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +GR G
Sbjct: 28 RKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQG 79
>sp|Q54CN8|TAF13_DICDI Transcription initiation factor TFIID subunit 13 OS=Dictyostelium
discoideum GN=taf13 PE=3 SV=1
Length = 106
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 118 LPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTGRVQ 176
+ + RKRMFSKEL+ MMYGFGD R P ES+D+LE+ V +F+ +MT KA ++ + G+ Q
Sbjct: 1 MSTKRKRMFSKELKHMMYGFGDVREPLHESIDLLEELVFEFIQEMTLKAAQVSNKRGKFQ 60
Query: 177 VEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFD 212
ED+VFLVRKD +KY RV +LL MNEELKKA+KAFD
Sbjct: 61 TEDLVFLVRKDPKKYYRVIELLRMNEELKKAKKAFD 96
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 30 LPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTF 88
+ + RKRMFSKEL+ MMYGFGD R P ES+D+LE+ V +F+ +MT KA ++ F
Sbjct: 1 MSTKRKRMFSKELKHMMYGFGDVREPLHESIDLLEELVFEFIQEMTLKAAQVSNKRGKF 59
>sp|O60076|TAF13_SCHPO Transcription initiation factor TFIID subunit 13
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf13 PE=3 SV=3
Length = 111
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 119 PSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM-GRTGRVQV 177
P+ R+ +F+K+L+ +MY FGDD NP +S+++LE+ V+D++ +M +A + G +V+V
Sbjct: 11 PTRRQHLFTKDLKSLMYAFGDDVNPAPDSINVLEEIVVDYINEMCLEAARIAGNRNKVKV 70
Query: 178 EDIVFLVRKDNRKYARVKDLLTMNEELKKAR 208
+D F +R D +K RV++LL + + + R
Sbjct: 71 DDFKFALRDDPKKLGRVEELLVLQKMIADTR 101
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 38/52 (73%)
Query: 31 PSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG 82
P+ R+ +F+K+L+ +MY FGDD NP +S+++LE+ V+D++ +M +A +
Sbjct: 11 PTRRQHLFTKDLKSLMYAFGDDVNPAPDSINVLEEIVVDYINEMCLEAARIA 62
>sp|O75486|SUPT3_HUMAN Transcription initiation protein SPT3 homolog OS=Homo sapiens
GN=SUPT3H PE=1 SV=2
Length = 399
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 120 SGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG--RTGRV-Q 176
+G+ F+ EL+ MMY GD R P E+ ++ED V L+++ Q+A E+ R RV
Sbjct: 102 TGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGARVIT 161
Query: 177 VEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDE 213
ED++FL+RKD +K R+ + + + K K DE
Sbjct: 162 PEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 198
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 32 SGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGR 83
+G+ F+ EL+ MMY GD R P E+ ++ED V L+++ Q+A E+ +
Sbjct: 102 TGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQ 153
>sp|P11747|TAF13_YEAST Transcription initiation factor TFIID subunit 13 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF13 PE=1
SV=2
Length = 167
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 125 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTG---RVQVEDIV 181
+F+K++ ++Y +GD P +V L++ V +LVD+ A + ++++ED
Sbjct: 10 LFNKDVSSLLYAYGDVPQPLQATVQCLDELVSGYLVDVCTNAFHTAQNSQRNKLRLEDFK 69
Query: 182 FLVRKDNRKYARVKDLLTMNEELKKARKAFDEV 214
F +RKD K R ++L+ N+ + +A+K F+E
Sbjct: 70 FALRKDPIKLGRAEELIATNKLITEAKKQFNET 102
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 37 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTG 85
+F+K++ ++Y +GD P +V L++ V +LVD+ A +
Sbjct: 10 LFNKDVSSLLYAYGDVPQPLQATVQCLDELVSGYLVDVCTNAFHTAQNS 58
>sp|O14311|SPT3_SCHPO SAGA complex subunit spt3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=spt3 PE=1 SV=2
Length = 307
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 120 SGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTGR--VQ 176
+GR + E++ MM+ G+ ++P E+ ++E+ + +++M +A E+ R G +
Sbjct: 4 TGRTSKYRVEIQQMMFILGEVQDPLPETTQLVEELIRGQVMEMLIQANELALRRGSRSIT 63
Query: 177 VEDIVFLVRKDNRKYARVKDLLTMNEELKKARK 209
VED+ FL+R D K R+K L+ E KKA++
Sbjct: 64 VEDLFFLIRHDRAKVNRLKTYLSWKEVRKKAKE 96
>sp|P06844|SPT3_YEAST Protein SPT3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SPT3 PE=1 SV=1
Length = 337
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 123 KRMFSKELRCMMYGFGDDRNPYTESVDILED----AVIDFLVDMTQKAMEMGRTGRVQVE 178
K + E++ MM+ G+ +P E+ ++ED VI+ L+ + A G + + E
Sbjct: 4 KHKYRVEIQQMMFVSGEINDPPVETTSLIEDIVRGQVIEILLQSNKTAHLRG-SRSILPE 62
Query: 179 DIVFLVRKDNRKYARVKDLLTMNEELKKAR 208
D++FL+R D K R++ L+ + K A+
Sbjct: 63 DVIFLIRHDKAKVNRLRTYLSWKDLRKNAK 92
>sp|O13472|SPT3_KLULA Protein SPT3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SPT3 PE=3
SV=1
Length = 328
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 129 ELRCMMYGFGDDRNPYTESVDILED----AVIDFLVDMTQKAMEMGRTGRVQVEDIVFLV 184
E++ MM+ G++ P E+ ++ED V++ L+ T+ A G V ED++FL+
Sbjct: 10 EIQQMMFVSGENNEPPVETTSLIEDIVRGQVVEILLQATRTANCRGSKSIVP-EDVIFLI 68
Query: 185 RKDNRKYARVKDLLTMNE 202
R D K R++ L+ +
Sbjct: 69 RHDKAKVNRLRTYLSWKD 86
>sp|B1JGL5|NUOCD_YERPY NADH-quinone oxidoreductase subunit C/D OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=nuoC
PE=3 SV=1
Length = 598
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 139 DDRNPYTESVDILEDAVID----------FLVDMTQKAMEMGRTGRVQVEDIVFLVRKDN 188
D P ++ D L+D VI F+V T+ M + R Q+ +++ +RK
Sbjct: 8 DSLQPAWQTRDHLDDPVIGELSNRFGPEAFVVQATRTGMPVVWVKREQLLEVMSFLRKQP 67
Query: 189 RKYARVKDLLTMNEELKKARKAFDEVKF 216
+ Y + DL ++E L+ R+ + F
Sbjct: 68 KPYVMLFDLHGVDERLRTHRQGLPDADF 95
>sp|Q669A2|NUOCD_YERPS NADH-quinone oxidoreductase subunit C/D OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=nuoC
PE=3 SV=1
Length = 598
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 139 DDRNPYTESVDILEDAVID----------FLVDMTQKAMEMGRTGRVQVEDIVFLVRKDN 188
D P ++ D L+D VI F+V T+ M + R Q+ +++ +RK
Sbjct: 8 DSLQPAWQTRDHLDDPVIGELSNRFGPEAFVVQATRTGMPVVWVKREQLLEVMSFLRKQP 67
Query: 189 RKYARVKDLLTMNEELKKARKAFDEVKF 216
+ Y + DL ++E L+ R+ + F
Sbjct: 68 KPYVMLFDLHGVDERLRTHRQGLPDADF 95
>sp|A4TM34|NUOCD_YERPP NADH-quinone oxidoreductase subunit C/D OS=Yersinia pestis (strain
Pestoides F) GN=nuoC PE=3 SV=1
Length = 598
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 139 DDRNPYTESVDILEDAVID----------FLVDMTQKAMEMGRTGRVQVEDIVFLVRKDN 188
D P ++ D L+D VI F+V T+ M + R Q+ +++ +RK
Sbjct: 8 DSLQPAWQTRDHLDDPVIGELSNRFGPEAFVVQATRTGMPVVWVKREQLLEVMSFLRKQP 67
Query: 189 RKYARVKDLLTMNEELKKARKAFDEVKF 216
+ Y + DL ++E L+ R+ + F
Sbjct: 68 KPYVMLFDLHGVDERLRTHRQGLPDADF 95
>sp|Q1CHQ3|NUOCD_YERPN NADH-quinone oxidoreductase subunit C/D OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=nuoC PE=3 SV=1
Length = 598
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 139 DDRNPYTESVDILEDAVID----------FLVDMTQKAMEMGRTGRVQVEDIVFLVRKDN 188
D P ++ D L+D VI F+V T+ M + R Q+ +++ +RK
Sbjct: 8 DSLQPAWQTRDHLDDPVIGELSNRFGPEAFVVQATRTGMPVVWVKREQLLEVMSFLRKQP 67
Query: 189 RKYARVKDLLTMNEELKKARKAFDEVKF 216
+ Y + DL ++E L+ R+ + F
Sbjct: 68 KPYVMLFDLHGVDERLRTHRQGLPDADF 95
>sp|Q7CJ92|NUOCD_YERPE NADH-quinone oxidoreductase subunit C/D OS=Yersinia pestis GN=nuoC
PE=3 SV=1
Length = 598
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 139 DDRNPYTESVDILEDAVID----------FLVDMTQKAMEMGRTGRVQVEDIVFLVRKDN 188
D P ++ D L+D VI F+V T+ M + R Q+ +++ +RK
Sbjct: 8 DSLQPAWQTRDHLDDPVIGELSNRFGPEAFVVQATRTGMPVVWVKREQLLEVMSFLRKQP 67
Query: 189 RKYARVKDLLTMNEELKKARKAFDEVKF 216
+ Y + DL ++E L+ R+ + F
Sbjct: 68 KPYVMLFDLHGVDERLRTHRQGLPDADF 95
>sp|B2K819|NUOCD_YERPB NADH-quinone oxidoreductase subunit C/D OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=nuoC
PE=3 SV=1
Length = 598
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 139 DDRNPYTESVDILEDAVID----------FLVDMTQKAMEMGRTGRVQVEDIVFLVRKDN 188
D P ++ D L+D VI F+V T+ M + R Q+ +++ +RK
Sbjct: 8 DSLQPAWQTRDHLDDPVIGELSNRFGPEAFVVQATRTGMPVVWVKREQLLEVMSFLRKQP 67
Query: 189 RKYARVKDLLTMNEELKKARKAFDEVKF 216
+ Y + DL ++E L+ R+ + F
Sbjct: 68 KPYVMLFDLHGVDERLRTHRQGLPDADF 95
>sp|Q1C6B1|NUOCD_YERPA NADH-quinone oxidoreductase subunit C/D OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=nuoC PE=3 SV=1
Length = 598
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 139 DDRNPYTESVDILEDAVID----------FLVDMTQKAMEMGRTGRVQVEDIVFLVRKDN 188
D P ++ D L+D VI F+V T+ M + R Q+ +++ +RK
Sbjct: 8 DSLQPAWQTRDHLDDPVIGELSNRFGPEAFVVQATRTGMPVVWVKREQLLEVMSFLRKQP 67
Query: 189 RKYARVKDLLTMNEELKKARKAFDEVKF 216
+ Y + DL ++E L+ R+ + F
Sbjct: 68 KPYVMLFDLHGVDERLRTHRQGLPDADF 95
>sp|A7FGQ7|NUOCD_YERP3 NADH-quinone oxidoreductase subunit C/D OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=nuoC PE=3 SV=1
Length = 598
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 139 DDRNPYTESVDILEDAVID----------FLVDMTQKAMEMGRTGRVQVEDIVFLVRKDN 188
D P ++ D L+D VI F+V T+ M + R Q+ +++ +RK
Sbjct: 8 DSLQPAWQTRDHLDDPVIGELSNRFGPEAFVVQATRTGMPVVWVKREQLLEVMSFLRKQP 67
Query: 189 RKYARVKDLLTMNEELKKARKAFDEVKF 216
+ Y + DL ++E L+ R+ + F
Sbjct: 68 KPYVMLFDLHGVDERLRTHRQGLPDADF 95
>sp|A1JLG6|NUOCD_YERE8 NADH-quinone oxidoreductase subunit C/D OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=nuoC PE=3
SV=1
Length = 598
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 139 DDRNPYTESVDILEDAVID----------FLVDMTQKAMEMGRTGRVQVEDIVFLVRKDN 188
D P ++ D L+D VI F+V T+ M + R Q+ +++ +RK
Sbjct: 8 DSTQPAWQTRDHLDDPVIGELSNRFGPEAFVVQATRTGMPVVWVKREQLLEVMTFLRKQP 67
Query: 189 RKYARVKDLLTMNEELKKARKAFDEVKF 216
+ Y + DL ++E L+ R+ F
Sbjct: 68 KPYVMLFDLHGVDERLRTHRQGLPAADF 95
>sp|Q821S1|MURD_CHLCV UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlamydophila
caviae (strain GPIC) GN=murD PE=3 SV=1
Length = 419
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 67 VIDFLVDMTQKAMEMGRTGPTFLSLLKFKSNKNVCVFSFQFEEEEQDTPV 116
++ L M A MG G L ++ K + V + SFQ E+E +TPV
Sbjct: 120 LVHLLRSMGMGAFAMGNIGVPILQAMREKGIRVVEISSFQLTEQEIETPV 169
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 33/136 (24%)
Query: 83 RTGPTFLSLLKFKSNKNVCVFSFQFEEEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRN 142
R P+ + L ++NK C S QF +E ++ S+E R ++YG + N
Sbjct: 8 RKIPSRIRLRNLRNNKPFCSQS-QFPKESENP------------SQEQRLLVYGSTSEEN 54
Query: 143 PYTESVDIL--------EDAVIDFLVD------MTQKAMEMGRTGRVQVED------IVF 182
P T V +L + +VID L++ + R R ED ++
Sbjct: 55 PVTSKVSLLSAKPEQKDDASVIDVLLNRRNNPEAALRFYNWARPWRGSFEDGDVFWVLIH 114
Query: 183 LVRKDNRKYARVKDLL 198
++ Y R DLL
Sbjct: 115 ILVSSPETYGRASDLL 130
>sp|O83273|Y245_TREPA Uncharacterized protein TP_0245 OS=Treponema pallidum (strain
Nichols) GN=TP_0245 PE=4 SV=1
Length = 1151
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 32 SGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDF 70
SG + + ++E +YGF NPYTE+V + ED V+ F
Sbjct: 984 SGTRLLHNEEYSDAIYGF---ENPYTEAVVLSEDRVVVF 1019
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 120 SGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDF 158
SG + + ++E +YGF NPYTE+V + ED V+ F
Sbjct: 984 SGTRLLHNEEYSDAIYGF---ENPYTEAVVLSEDRVVVF 1019
>sp|Q924W6|TRI66_MOUSE Tripartite motif-containing protein 66 OS=Mus musculus GN=Trim66
PE=1 SV=3
Length = 1242
Score = 31.2 bits (69), Expect = 6.0, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 132 CMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIVFLVRKDNRKY 191
C+M + R + E V + +++ + +T Q+ED +F V+ +RK
Sbjct: 88 CLMVEHKEHRCRHVEEVLQNQRMLLESVTSQVAHKKSSLQTSAKQIEDRIFEVKHQHRKV 147
Query: 192 A---RVKDLLTMNEELKKARKAFDEVKFVTN 219
++ ++ MNE K+A +E++ +TN
Sbjct: 148 ENQIKMAKMVLMNELNKQANGLIEELEGITN 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,726,231
Number of Sequences: 539616
Number of extensions: 3623825
Number of successful extensions: 8120
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 8089
Number of HSP's gapped (non-prelim): 45
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)