Query psy7662
Match_columns 220
No_of_seqs 218 out of 384
Neff 4.8
Searched_HMMs 29240
Date Sat Aug 17 00:14:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_A TAFII18; histone fold, 99.8 2.3E-21 7.8E-26 130.6 6.1 45 37-81 1-45 (45)
2 1bh9_A TAFII18; histone fold, 99.8 1E-19 3.5E-24 122.5 6.2 45 125-169 1-45 (45)
3 3b0b_B CENP-S, centromere prot 97.5 0.00019 6.5E-09 55.9 6.5 59 141-199 38-99 (107)
4 1f1e_A Histone fold protein; a 96.1 0.021 7.3E-07 46.8 8.0 126 50-190 19-150 (154)
5 3b0c_T CENP-T, centromere prot 95.7 0.012 4E-07 45.7 4.7 62 127-189 10-74 (111)
6 1id3_B Histone H4; nucleosome 95.0 0.022 7.6E-07 43.5 4.2 64 123-187 27-93 (102)
7 2hue_C Histone H4; mini beta s 95.0 0.042 1.4E-06 40.3 5.5 64 123-187 9-75 (84)
8 2yfw_B Histone H4, H4; cell cy 94.8 0.029 9.8E-07 42.8 4.2 64 123-187 28-94 (103)
9 1tzy_D Histone H4-VI; histone- 94.7 0.045 1.5E-06 41.6 5.2 65 122-187 27-94 (103)
10 4dra_A Centromere protein S; D 94.7 0.077 2.6E-06 41.6 6.5 57 141-197 46-105 (113)
11 3v9r_A MHF1, uncharacterized p 94.5 0.054 1.8E-06 40.7 5.1 51 141-191 31-84 (90)
12 1ku5_A HPHA, archaeal histon; 94.1 0.058 2E-06 38.0 4.2 47 140-186 21-70 (70)
13 3vh5_A CENP-S; histone fold, c 93.9 0.13 4.3E-06 41.7 6.4 59 141-199 38-99 (140)
14 2byk_B Chrac-14; nucleosome sl 93.4 0.19 6.3E-06 39.8 6.5 58 130-187 15-76 (128)
15 1jfi_B DR1 protein, transcript 93.3 0.42 1.4E-05 40.1 8.7 63 124-186 15-80 (179)
16 1n1j_B NF-YC; histone-like PAI 93.0 0.21 7.1E-06 37.4 6.0 67 123-189 18-87 (97)
17 2ly8_A Budding yeast chaperone 93.0 1.3 4.6E-05 34.8 10.9 101 38-188 7-113 (121)
18 1n1j_A NF-YB; histone-like PAI 92.9 0.19 6.6E-06 37.1 5.6 58 128-185 12-73 (93)
19 1b67_A Protein (histone HMFA); 92.6 0.21 7.2E-06 34.6 5.2 48 139-186 16-66 (68)
20 3b0c_W CENP-W, centromere prot 92.5 0.26 9E-06 35.2 5.6 62 124-186 4-69 (76)
21 4g92_C HAPE; transcription fac 89.5 0.54 1.8E-05 36.5 5.2 64 125-188 42-108 (119)
22 1taf_B TFIID TBP associated fa 89.0 0.72 2.5E-05 33.0 5.2 55 130-185 12-69 (70)
23 1h3o_B Transcription initiatio 89.0 0.73 2.5E-05 33.5 5.3 57 130-186 11-70 (76)
24 1jfi_A Transcription regulator 87.7 0.9 3.1E-05 34.0 5.2 64 125-188 12-78 (98)
25 3b0b_B CENP-S, centromere prot 86.9 0.47 1.6E-05 36.6 3.3 47 53-99 38-87 (107)
26 1taf_A TFIID TBP associated fa 84.9 2.4 8.1E-05 30.1 5.9 54 131-185 8-64 (68)
27 1h3o_B Transcription initiatio 82.2 2.8 9.5E-05 30.4 5.5 38 52-89 21-59 (76)
28 2byk_A Chrac-16; nucleosome sl 79.8 2.4 8.3E-05 33.9 4.9 82 125-207 20-115 (140)
29 1f1e_A Histone fold protein; a 79.6 2.4 8.1E-05 34.6 4.8 54 130-184 10-67 (154)
30 2jss_A Chimera of histone H2B. 78.9 13 0.00045 30.8 9.3 31 53-83 20-50 (192)
31 2l5a_A Histone H3-like centrom 78.2 3.1 0.00011 36.2 5.4 153 34-187 13-226 (235)
32 2hue_C Histone H4; mini beta s 69.1 6.5 0.00022 28.4 4.4 64 35-99 9-75 (84)
33 1ku5_A HPHA, archaeal histon; 65.4 9.9 0.00034 26.2 4.6 44 52-95 21-67 (70)
34 1id3_B Histone H4; nucleosome 65.1 4.8 0.00016 30.3 3.1 63 36-99 28-93 (102)
35 2jss_A Chimera of histone H2B. 64.7 22 0.00074 29.4 7.4 61 126-186 5-68 (192)
36 2jx0_A ARF GTPase-activating p 62.1 8.1 0.00028 31.0 4.1 39 43-81 2-40 (135)
37 3b0c_T CENP-T, centromere prot 61.7 3.6 0.00012 31.5 1.9 60 39-99 10-72 (111)
38 1tzy_D Histone H4-VI; histone- 59.1 12 0.0004 28.0 4.4 67 32-99 25-94 (103)
39 2yfw_B Histone H4, H4; cell cy 57.1 8.1 0.00028 28.9 3.1 64 34-98 27-93 (103)
40 3v9r_A MHF1, uncharacterized p 57.1 10 0.00034 28.2 3.6 47 53-99 31-80 (90)
41 3vlf_B 26S protease regulatory 56.4 6.9 0.00023 27.9 2.5 44 158-201 39-88 (88)
42 2f8n_G Core histone macro-H2A. 56.2 16 0.00056 28.2 4.9 61 129-189 27-90 (120)
43 2nqb_C Histone H2A; nucleosome 55.9 9.9 0.00034 29.6 3.6 43 147-189 46-91 (123)
44 1f66_C Histone H2A.Z; nucleoso 54.4 10 0.00034 29.8 3.4 32 158-189 65-96 (128)
45 1b67_A Protein (histone HMFA); 54.0 16 0.00055 24.8 4.1 45 51-95 16-63 (68)
46 1id3_C Histone H2A.1; nucleoso 53.8 11 0.00039 29.6 3.6 41 149-189 50-93 (131)
47 1tzy_A Histone H2A-IV; histone 53.3 11 0.00039 29.5 3.6 44 146-189 47-93 (129)
48 4dra_E Centromere protein X; D 50.8 23 0.0008 26.0 4.7 53 130-182 18-75 (84)
49 2f8n_K Histone H2A type 1; nuc 50.5 12 0.00042 30.2 3.4 40 150-189 70-112 (149)
50 4dra_A Centromere protein S; D 49.1 14 0.00046 28.7 3.3 47 53-99 46-95 (113)
51 1taf_A TFIID TBP associated fa 48.8 16 0.00056 25.7 3.4 50 45-95 10-62 (68)
52 2jx0_A ARF GTPase-activating p 48.0 19 0.00063 28.9 4.0 58 131-188 2-67 (135)
53 2nqb_D Histone H2B; nucleosome 45.3 50 0.0017 25.9 6.1 64 122-185 31-97 (123)
54 1taf_B TFIID TBP associated fa 43.8 23 0.00078 25.1 3.5 43 53-95 22-67 (70)
55 1tzy_B Histone H2B; histone-fo 42.4 52 0.0018 25.9 5.8 64 122-185 34-100 (126)
56 3b0c_W CENP-W, centromere prot 41.4 35 0.0012 23.8 4.3 41 41-82 9-50 (76)
57 2hue_B Histone H3; mini beta s 40.1 54 0.0019 23.5 5.2 45 141-185 24-71 (77)
58 3nqj_A Histone H3-like centrom 39.4 48 0.0017 24.1 4.8 44 142-185 27-73 (82)
59 1n1j_A NF-YB; histone-like PAI 38.1 36 0.0012 24.6 4.0 55 42-96 14-72 (93)
60 1jfi_B DR1 protein, transcript 37.1 39 0.0013 28.0 4.5 58 38-95 17-77 (179)
61 2byk_B Chrac-14; nucleosome sl 37.0 35 0.0012 26.5 4.0 53 42-94 15-71 (128)
62 2yfv_A Histone H3-like centrom 36.7 46 0.0016 25.0 4.5 63 123-185 30-98 (100)
63 1n1j_B NF-YC; histone-like PAI 36.2 43 0.0015 24.5 4.2 65 33-97 16-83 (97)
64 3vh5_A CENP-S; histone fold, c 34.9 26 0.00089 28.1 3.0 47 53-99 38-87 (140)
65 3b0b_C CENP-X, centromere prot 34.7 44 0.0015 24.2 4.0 52 130-181 14-70 (81)
66 3r45_A Histone H3-like centrom 32.8 47 0.0016 27.1 4.2 60 126-185 83-147 (156)
67 1tzy_C Histone H3; histone-fol 30.8 79 0.0027 25.0 5.2 60 126-185 68-130 (136)
68 3nqu_A Histone H3-like centrom 30.1 58 0.002 26.0 4.3 45 141-185 84-131 (140)
69 2a7o_A Huntingtin interacting 29.4 75 0.0026 24.6 4.6 43 144-186 11-59 (112)
70 2cuj_A Transcriptional adaptor 28.9 61 0.0021 24.6 4.1 31 171-201 72-102 (108)
71 3aji_B S6C, proteasome (prosom 28.5 40 0.0014 23.1 2.8 31 156-186 37-70 (83)
72 2ly8_A Budding yeast chaperone 28.4 33 0.0011 26.8 2.5 45 53-97 63-110 (121)
73 3kw6_A 26S protease regulatory 23.9 29 0.001 23.6 1.3 33 154-186 37-72 (78)
74 3b0b_C CENP-X, centromere prot 23.6 93 0.0032 22.5 4.0 35 48-82 21-56 (81)
75 4dra_E Centromere protein X; D 23.5 77 0.0026 23.1 3.6 36 48-83 25-61 (84)
76 2aqe_A Transcriptional adaptor 22.3 62 0.0021 23.6 2.9 31 171-201 54-84 (90)
77 2hue_B Histone H3; mini beta s 21.9 1.6E+02 0.0054 21.0 4.9 56 38-93 9-67 (77)
No 1
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=99.84 E-value=2.3e-21 Score=130.56 Aligned_cols=45 Identities=78% Similarity=1.334 Sum_probs=43.5
Q ss_pred cchHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy7662 37 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM 81 (220)
Q Consensus 37 ~f~kel~~mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~ 81 (220)
+|+|||++|||||||+++|+||||++|||||++||+++|++|+++
T Consensus 1 lF~~ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~v 45 (45)
T 1bh9_A 1 LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45 (45)
T ss_dssp CCHHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999999999999999874
No 2
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=99.79 E-value=1e-19 Score=122.49 Aligned_cols=45 Identities=78% Similarity=1.334 Sum_probs=43.4
Q ss_pred ccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7662 125 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM 169 (220)
Q Consensus 125 ~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~ 169 (220)
+|++||++|||||||+++|++|||++|||||++||+++|++|.++
T Consensus 1 lF~~ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~v 45 (45)
T 1bh9_A 1 LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45 (45)
T ss_dssp CCHHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999874
No 3
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.51 E-value=0.00019 Score=55.86 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=53.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccChhHHHHHHHHHH
Q psy7662 141 RNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKDNRKYARVKDLLT 199 (220)
Q Consensus 141 ~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD~~Kl~Rv~~lL~ 199 (220)
..-.++++..|-+++.+|+.+++..|...| .|..|+++|+.+++|++|..+++|++++.
T Consensus 38 ~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~~~~~ 99 (107)
T 3b0b_B 38 VLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKSD 99 (107)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHHHHHH
Confidence 357889999999999999999999998765 67799999999999999999999998864
No 4
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=96.07 E-value=0.021 Score=46.80 Aligned_cols=126 Identities=18% Similarity=0.152 Sum_probs=92.4
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCCC--ceeeccccccCCceeeeccccccccccCCCCCCCCccccc
Q psy7662 50 GDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTGP--TFLSLLKFKSNKNVCVFSFQFEEEEQDTPVNLPSGRKRMF 126 (220)
Q Consensus 50 GD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrgk--~~l~dlrfd~~K~~~~~~fq~~~~~~~~~~~~~~~rk~~f 126 (220)
|+ ..-..+....|-+.+.+|+..+...|..+| +.|+ ++-+|+..+-... -| ++-.. +....+=
T Consensus 19 g~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~l----g~--~~v~d-------~~~l~lP 84 (154)
T 1f1e_A 19 GE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVL----MV--EGVED-------YDGELFG 84 (154)
T ss_dssp TT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHH----TC--TTSTT-------CCSCCCC
T ss_pred Cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc----cc--ccCCc-------cccccCC
Confidence 77 677788999999999999999999999999 4453 6777776654221 01 11000 0111233
Q ss_pred HHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccChhH
Q psy7662 127 SKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKDNRK 190 (220)
Q Consensus 127 ~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD~~K 190 (220)
..=|..+|--.|. ..-+.+....+-+++.+|+..++..|...| +|..|+.+|+.++++++-.|
T Consensus 85 ~a~V~Ri~k~~g~-~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 85 RATVRRILKRAGI-ERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp HHHHHHHHHHTTC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred ccHHHHHHHHcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 4456666665555 578889999999999999999999999886 57799999999999877433
No 5
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=95.72 E-value=0.012 Score=45.71 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=51.5
Q ss_pred HHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccChh
Q psy7662 127 SKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKDNR 189 (220)
Q Consensus 127 ~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD~~ 189 (220)
..-|+.+|-.+|. ..-..+++..+.+++.+|+..++..|...| +|..|+.+|+++++|+.+.
T Consensus 10 ~a~I~Ri~r~~g~-~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 10 SSLIKQIFSHYVK-TPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp CHHHHHHHHHHHC-SCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 3457777766665 667788999999999999999999998775 6779999999999998753
No 6
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.05 E-value=0.022 Score=43.48 Aligned_cols=64 Identities=11% Similarity=0.185 Sum_probs=53.0
Q ss_pred ccccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccC
Q psy7662 123 KRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKD 187 (220)
Q Consensus 123 k~~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD 187 (220)
+++=..-|+.+|=-.|- ..-..+....+.++|.+|+.++++.|...+ +|..|+.+|+.++|++.
T Consensus 27 ~~ip~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 27 QGITKPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 34555668888877774 667788999999999999999999998774 67899999999999864
No 7
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=95.01 E-value=0.042 Score=40.32 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=53.6
Q ss_pred ccccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccC
Q psy7662 123 KRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKD 187 (220)
Q Consensus 123 k~~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD 187 (220)
+++-..-|+.++-..|- ..-..+....+.++|..|+.++++.|...+ +|..++.+|+.++|++.
T Consensus 9 ~~ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 9 QGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 45566678888887775 667788999999999999999999998774 67899999999999864
No 8
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=94.80 E-value=0.029 Score=42.76 Aligned_cols=64 Identities=13% Similarity=0.202 Sum_probs=51.1
Q ss_pred ccccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccC
Q psy7662 123 KRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKD 187 (220)
Q Consensus 123 k~~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD 187 (220)
+++=..-|+.++=-.|- ..-..+....+.++|..|+.+++..|...+ +|..|+.+|+.++||+.
T Consensus 28 ~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 28 QGITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp --CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 44555668888877775 566778888999999999999999988775 67799999999999863
No 9
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=94.74 E-value=0.045 Score=41.59 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=54.0
Q ss_pred cccccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccC
Q psy7662 122 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKD 187 (220)
Q Consensus 122 rk~~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD 187 (220)
.+++-..-|+.++=-.|- ..-..+....+.++|..|+.+++..|...+ +|..|+.+|+.++||+.
T Consensus 27 ~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 27 IQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp GGGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 455666778888887775 667778889999999999999999998775 57799999999999864
No 10
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=94.65 E-value=0.077 Score=41.56 Aligned_cols=57 Identities=11% Similarity=0.206 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccChhHHHHHHHH
Q psy7662 141 RNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKDNRKYARVKDL 197 (220)
Q Consensus 141 ~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD~~Kl~Rv~~l 197 (220)
....++++..|-+++-.|+.++...+...| .|+.|+.+|+..++|++|.=+.=|+++
T Consensus 46 ~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~~ 105 (113)
T 4dra_A 46 MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDK 105 (113)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHHH
Confidence 458899999999999999999999987765 678999999999999999766655554
No 11
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.054 Score=40.75 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=44.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCCcchhHhhhccChhHH
Q psy7662 141 RNPYTESVDILEDAVIDFLVDMTQKAMEM---GRTGRVQVEDIVFLVRKDNRKY 191 (220)
Q Consensus 141 ~~P~~ETv~l~EdIV~e~I~~l~~~A~~~---arrgki~~eDl~FllRkD~~Kl 191 (220)
.+..++++..|-+++-+|+.++...+... |.|+.|+.+|+..++|++|.=+
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~ 84 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQ 84 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHH
Confidence 46889999999999999999999988766 4678999999999999998643
No 12
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=94.06 E-value=0.058 Score=37.95 Aligned_cols=47 Identities=19% Similarity=0.425 Sum_probs=41.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhcc
Q psy7662 140 DRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRK 186 (220)
Q Consensus 140 ~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRk 186 (220)
+..=.++.+..+.+++..|+.+++..|...| +|..|+.+|+.+++|.
T Consensus 21 ~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 21 AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 4677889999999999999999999998775 5779999999999874
No 13
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=93.89 E-value=0.13 Score=41.74 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=50.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccChhHHHHHHHHHH
Q psy7662 141 RNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKDNRKYARVKDLLT 199 (220)
Q Consensus 141 ~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD~~Kl~Rv~~lL~ 199 (220)
....++++..|-+++..|+.++...+...| .|..|+.+|+..++|++|.=+.=|+++..
T Consensus 38 ~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~~~ 99 (140)
T 3vh5_A 38 VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKSD 99 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHHHH
Confidence 457789999999999999999999987664 67899999999999999988777777654
No 14
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=93.38 E-value=0.19 Score=39.77 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=50.4
Q ss_pred HHHhhhh-cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccC
Q psy7662 130 LRCMMYG-FGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKD 187 (220)
Q Consensus 130 I~~MMyg-fGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD 187 (220)
|+.+|=. .-|...-..++..+|-..+..||..|...|..++ +|..|+.+||+.+|..-
T Consensus 15 I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 15 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 6778884 4467888999999999999999999999999886 46799999999999865
No 15
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=93.26 E-value=0.42 Score=40.06 Aligned_cols=63 Identities=8% Similarity=0.143 Sum_probs=54.4
Q ss_pred cccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhcc
Q psy7662 124 RMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRK 186 (220)
Q Consensus 124 ~~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRk 186 (220)
.+=..=|..+|-..|....-..|+..+|-+.+.+||..|...|..++ .|..|+.+||+.+|..
T Consensus 15 ~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 15 TIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp CCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 45566788899888865677889999999999999999999999986 4678999999999974
No 16
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=93.03 E-value=0.21 Score=37.41 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=57.2
Q ss_pred ccccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccChh
Q psy7662 123 KRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKDNR 189 (220)
Q Consensus 123 k~~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD~~ 189 (220)
..+=..=|+.+|-.-+|+..-..++.-++-..+-.||.+++..|...| +|..|+.+||..+++++..
T Consensus 18 ~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~ 87 (97)
T 1n1j_B 18 QELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQ 87 (97)
T ss_dssp --CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGG
T ss_pred CcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcH
Confidence 344456689999999999999999999999999999999999999886 4568999999999998853
No 17
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=93.02 E-value=1.3 Score=34.82 Aligned_cols=101 Identities=12% Similarity=0.193 Sum_probs=64.6
Q ss_pred chHHHHHhhhhcCC---CCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeccccccCCceeeeccccccccccC
Q psy7662 38 FSKELRCMMYGFGD---DRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTFLSLLKFKSNKNVCVFSFQFEEEEQDT 114 (220)
Q Consensus 38 f~kel~~mmygfGD---~~~P~~eTv~llEeIv~~yI~~l~~~A~~~arrgk~~l~dlrfd~~K~~~~~~fq~~~~~~~~ 114 (220)
|+.=+|.+.--|.. +--=.++.+..|.|..-.||..+..-|.-.|... ++-+|
T Consensus 7 F~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA----------~~gGv-------------- 62 (121)
T 2ly8_A 7 FARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHL----------VPRGS-------------- 62 (121)
T ss_dssp HHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------CCCCS--------------
T ss_pred hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcC----------CccCc--------------
Confidence 44444444444432 3455678999999999999999999998888433 11111
Q ss_pred CCCCCCCcccccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCCcchhHhhhccCh
Q psy7662 115 PVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM---GRTGRVQVEDIVFLVRKDN 188 (220)
Q Consensus 115 ~~~~~~~rk~~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~---arrgki~~eDl~FllRkD~ 188 (220)
+.-+.+...-+-+++.+|+.++++.|... |+|+.++.+|+.+++++.-
T Consensus 63 --------------------------kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 63 --------------------------KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp --------------------------SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred --------------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 11122233344455555566666666554 5788999999999998753
No 18
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=92.94 E-value=0.19 Score=37.10 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=49.4
Q ss_pred HHHHHhhhhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhc
Q psy7662 128 KELRCMMYGFG-DDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVR 185 (220)
Q Consensus 128 kEI~~MMygfG-D~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllR 185 (220)
.=|+.+|-.-| |+..-..++..++-+.+..||..+...|..+| +|..|+.+|+..+++
T Consensus 12 a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 12 ANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred hHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 34667777774 56677889999999999999999999999886 567999999999997
No 19
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=92.59 E-value=0.21 Score=34.63 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=41.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhcc
Q psy7662 139 DDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRK 186 (220)
Q Consensus 139 D~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRk 186 (220)
++..-..++..++.+.+..||..+...|..+| +|..|+.+|+..++|.
T Consensus 16 ~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 16 GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 34667889999999999999999999998886 5779999999999874
No 20
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=92.45 E-value=0.26 Score=35.21 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=49.4
Q ss_pred cccHHHHHHhhh-hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhcc
Q psy7662 124 RMFSKELRCMMY-GFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRK 186 (220)
Q Consensus 124 ~~f~kEI~~MMy-gfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRk 186 (220)
.+=..=|..+|= ..+|. .-..++..+|-+.+.+||..+..+|...+ .|..|+.+|+..+++.
T Consensus 4 ~LP~A~V~rI~K~~~p~~-~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHL-RLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHCTTC-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 334445667777 55763 55689999999999999999999999987 4679999999988763
No 21
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=89.46 E-value=0.54 Score=36.52 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=55.9
Q ss_pred ccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccCh
Q psy7662 125 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKDN 188 (220)
Q Consensus 125 ~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD~ 188 (220)
+=..=|+.+|-.-.|+..-..++.-++-..+-.||.+|+..|...| +|.+|+.+||.-+++++.
T Consensus 42 lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e 108 (119)
T 4g92_C 42 LPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSD 108 (119)
T ss_dssp SCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred CCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCc
Confidence 4555688899877888888899999999999999999999999887 466899999999999885
No 22
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=89.03 E-value=0.72 Score=33.01 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=42.7
Q ss_pred HHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhc
Q psy7662 130 LRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVR 185 (220)
Q Consensus 130 I~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllR 185 (220)
|+.+-=..|= .+-.++....+=+-|-..+.+++++|.+.+ +|.+++++|+-.++|
T Consensus 12 v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 12 MKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3333334454 456678888888899999999999998874 678999999988876
No 23
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=88.97 E-value=0.73 Score=33.54 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=43.9
Q ss_pred HHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC--CCCcchhHhhhcc
Q psy7662 130 LRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGR-TG--RVQVEDIVFLVRK 186 (220)
Q Consensus 130 I~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~ar-rg--ki~~eDl~FllRk 186 (220)
|+.|+--..=.....++.-.++=+|.-+||.+++..|+.+|+ |+ .+.+.|+.|.|.+
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 455554443345566677779999999999999999999993 43 6899999998764
No 24
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=87.68 E-value=0.9 Score=34.01 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=51.9
Q ss_pred ccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccCh
Q psy7662 125 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKDN 188 (220)
Q Consensus 125 ~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD~ 188 (220)
+=..=|+.+|=.-+|+..-..++.-++-..+--|+.+++..|...+ +|.+|+.+||.-++++|.
T Consensus 12 fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e 78 (98)
T 1jfi_A 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEG 78 (98)
T ss_dssp CCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---
T ss_pred CChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCc
Confidence 3355688999998998999999999999999999999999998886 356899999999999863
No 25
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=86.85 E-value=0.47 Score=36.62 Aligned_cols=47 Identities=4% Similarity=-0.003 Sum_probs=41.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CceeeccccccCCc
Q psy7662 53 RNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTG--PTFLSLLKFKSNKN 99 (220)
Q Consensus 53 ~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrg--k~~l~dlrfd~~K~ 99 (220)
....|+++..|-+++-+|+.+++..|..+| +.| .++.+|++...+++
T Consensus 38 ~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 38 VLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 357899999999999999999999999999 445 57999999988885
No 26
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=84.88 E-value=2.4 Score=30.08 Aligned_cols=54 Identities=9% Similarity=0.192 Sum_probs=42.6
Q ss_pred HHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhc
Q psy7662 131 RCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVR 185 (220)
Q Consensus 131 ~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllR 185 (220)
..++--.|= ..=.+..+..|=|++..|..+++..|...| .|..|+.||+..+++
T Consensus 8 ~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~ 64 (68)
T 1taf_A 8 MSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATE 64 (68)
T ss_dssp HHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 344445554 456677888888999999999999998875 567999999998875
No 27
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=82.24 E-value=2.8 Score=30.41 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=31.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcee
Q psy7662 52 DRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTGPTFL 89 (220)
Q Consensus 52 ~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrgk~~l 89 (220)
.....|+.-.+|=+|.-+||.+++..|+++| +||...+
T Consensus 21 ~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~l 59 (76)
T 1h3o_B 21 NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTL 59 (76)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 3456788889999999999999999999999 5665443
No 28
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=79.75 E-value=2.4 Score=33.87 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=50.5
Q ss_pred ccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc-C---CCCCCcchhHhhhccC----------hhH
Q psy7662 125 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-R---TGRVQVEDIVFLVRKD----------NRK 190 (220)
Q Consensus 125 ~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a-r---rgki~~eDl~FllRkD----------~~K 190 (220)
+=..=|+.+|=.-.|+..-..++.-+|-..+--||..|+..|..++ + |..|+.+||..+++++ |.|
T Consensus 20 LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~divP~k 99 (140)
T 2byk_A 20 LPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQIVPQK 99 (140)
T ss_dssp ---------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTTTSCSC
T ss_pred CCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhccccch
Confidence 4455688899888999999999999999999999999999999887 4 4589999999999876 433
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7662 191 YARVKDLLTMNEELKKA 207 (220)
Q Consensus 191 l~Rv~~lL~~k~~ik~A 207 (220)
. .+.+|+.+...-+++
T Consensus 100 i-~l~~~~~~~~~~~~~ 115 (140)
T 2byk_A 100 I-RVHQFQEMLRLNRSA 115 (140)
T ss_dssp C----------------
T ss_pred h-hHHHHHHHHHhcccc
Confidence 2 455555555444444
No 29
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=79.57 E-value=2.4 Score=34.58 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=46.3
Q ss_pred HHHhhhhc-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhh
Q psy7662 130 LRCMMYGF-GDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLV 184 (220)
Q Consensus 130 I~~MMygf-GD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~Fll 184 (220)
|..+|--. |+ ..-+.+....+-+.+.+|+..+...|...| +|+.|+.+|+++++
T Consensus 10 V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 10 IERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp HHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred HHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 45555555 88 778889999999999999999999999886 57799999999998
No 30
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=78.94 E-value=13 Score=30.75 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=28.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7662 53 RNPYTESVDILEDAVIDFLVDMTQKAMEMGR 83 (220)
Q Consensus 53 ~~P~~eTv~llEeIv~~yI~~l~~~A~~~ar 83 (220)
..-..+++..|..++.+.+..++.+|.++++
T Consensus 20 ~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~ 50 (192)
T 2jss_A 20 TGISQKSMSILNSFVNDIFERIATEASKLAA 50 (192)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478999999999999999999999999983
No 31
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=78.16 E-value=3.1 Score=36.23 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=89.3
Q ss_pred ccccchHHHHHhhhhcCC---CCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcee--ecc---------------
Q psy7662 34 RKRMFSKELRCMMYGFGD---DRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTGPTFL--SLL--------------- 92 (220)
Q Consensus 34 rk~~f~kel~~mmygfGD---~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrgk~~l--~dl--------------- 92 (220)
+|--|+.=+|.+.-.|.. .--=.++.+.+|.|..-.||..|..-|.-+| ..+++.+ -|+
T Consensus 13 ~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~~~p~e 92 (235)
T 2l5a_A 13 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFLVPRG 92 (235)
T ss_dssp SCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSCCCCSS
T ss_pred cCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhccCCchh
Confidence 344567766666666653 4556788999999999999999988777766 3332211 111
Q ss_pred ----------cc------ccCCceeeeccccccccccCC------------C-CCCCC-cccccHHHHHHhhhh------
Q psy7662 93 ----------KF------KSNKNVCVFSFQFEEEEQDTP------------V-NLPSG-RKRMFSKELRCMMYG------ 136 (220)
Q Consensus 93 ----------rf------d~~K~~~~~~fq~~~~~~~~~------------~-~~~~~-rk~~f~kEI~~MMyg------ 136 (220)
++ -..||-. |+=|.+..+...| + .++.+ ...-+.+=|+..+=.
T Consensus 93 vme~~~~~~~~~k~~~~~i~~ky~~-~~~~gd~idl~tG~iv~dnGh~~~l~~~~~~~~~~~r~~~vLrD~i~i~~~Rla 171 (235)
T 2l5a_A 93 SMERHKLADENMRKVWSNIISKYES-IEEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYTSVLRDIIDISDEEDG 171 (235)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTT-CCCCSCCCSSSSCCCCCCCCCCCSCCCCCGGGCCSSTHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCcccCCCCceeeeCcHHHHhhcCCCCCccchhHHHHHHHhhcccHHHHh
Confidence 11 1112332 3333333331111 1 01100 001222333322212
Q ss_pred -cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCCcchhHhhhccC
Q psy7662 137 -FGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM---GRTGRVQVEDIVFLVRKD 187 (220)
Q Consensus 137 -fGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~---arrgki~~eDl~FllRkD 187 (220)
-|-++.-+.+...-+-+++..|+.++++.|... |+|+.++.+|+.|++++-
T Consensus 172 RrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 172 DKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred hcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 234466677777788888899999999998776 478899999999999764
No 32
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=69.07 E-value=6.5 Score=28.39 Aligned_cols=64 Identities=8% Similarity=0.036 Sum_probs=50.5
Q ss_pred cccchHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CceeeccccccCCc
Q psy7662 35 KRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTG--PTFLSLLKFKSNKN 99 (220)
Q Consensus 35 k~~f~kel~~mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrg--k~~l~dlrfd~~K~ 99 (220)
+++-..-|+.++=..|- ..-.++....|.+++..||.++++.|..++ +.| .++.+|+.++-++.
T Consensus 9 ~~ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 9 QGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 34555567777777774 667788999999999999999999999998 333 46788888877765
No 33
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=65.40 E-value=9.9 Score=26.20 Aligned_cols=44 Identities=14% Similarity=0.348 Sum_probs=35.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCCC--ceeeccccc
Q psy7662 52 DRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTGP--TFLSLLKFK 95 (220)
Q Consensus 52 ~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrgk--~~l~dlrfd 95 (220)
+..-.++.+..|.+.+..|+.+++..|..+| +.|+ +..+|+..+
T Consensus 21 ~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA 67 (70)
T 1ku5_A 21 AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLA 67 (70)
T ss_dssp CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHH
T ss_pred cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 4677889999999999999999999999999 4454 555666543
No 34
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=65.10 E-value=4.8 Score=30.35 Aligned_cols=63 Identities=6% Similarity=0.036 Sum_probs=48.8
Q ss_pred ccchHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CceeeccccccCCc
Q psy7662 36 RMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTG--PTFLSLLKFKSNKN 99 (220)
Q Consensus 36 ~~f~kel~~mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrg--k~~l~dlrfd~~K~ 99 (220)
.+-..-|+.++=-.| ...-.++.+..|.+++.+||.++++.|..++ +.| .+..+|+.++-++.
T Consensus 28 ~ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 28 GITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GSCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 345556777777767 4667788999999999999999999999998 333 46778887766553
No 35
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=64.73 E-value=22 Score=29.43 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=46.4
Q ss_pred cHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhcc
Q psy7662 126 FSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRK 186 (220)
Q Consensus 126 f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRk 186 (220)
|..=|..++---+=...-..+++.+|..++.+.+.-++.+|..++ +|..++..|+-.++|-
T Consensus 5 ~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 5 YSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp THHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 444444444333333457889999999999999999999999987 3557999999998874
No 36
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=62.06 E-value=8.1 Score=30.97 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=34.1
Q ss_pred HHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy7662 43 RCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM 81 (220)
Q Consensus 43 ~~mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~ 81 (220)
.+|||+..+..-|..|.|-..=|.|+.=|.+|+..|...
T Consensus 2 ~~~~~~~~~~~~P~~e~Vvr~TE~ITk~IqeLl~AaQ~~ 40 (135)
T 2jx0_A 2 SHMLDGDPDPGLPSTEDVILKTEQVTKNIQELLRAAQEF 40 (135)
T ss_dssp ---CCSSCBSSCSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 369999999999999999999999999999999998863
No 37
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=61.69 E-value=3.6 Score=31.48 Aligned_cols=60 Identities=7% Similarity=0.154 Sum_probs=46.3
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CceeeccccccCCc
Q psy7662 39 SKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTG--PTFLSLLKFKSNKN 99 (220)
Q Consensus 39 ~kel~~mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrg--k~~l~dlrfd~~K~ 99 (220)
..-|+.||=-+|. ..-.++++..|.+++.+|+.+++..|..+| +.| .++.+|+.++.++.
T Consensus 10 ~a~I~Ri~r~~g~-~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~ 72 (111)
T 3b0c_T 10 SSLIKQIFSHYVK-TPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQ 72 (111)
T ss_dssp CHHHHHHHHHHHC-SCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHC
Confidence 3456666655554 566788999999999999999999999999 334 46778888776663
No 38
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=59.07 E-value=12 Score=28.01 Aligned_cols=67 Identities=7% Similarity=0.023 Sum_probs=51.5
Q ss_pred ccccccchHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-C--CCCceeeccccccCCc
Q psy7662 32 SGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-R--TGPTFLSLLKFKSNKN 99 (220)
Q Consensus 32 ~~rk~~f~kel~~mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-r--rgk~~l~dlrfd~~K~ 99 (220)
...+.+-..-|+.++=-.|- ..-..+....|.+++..||.++++.|..+| . |..+..+|+.++-++.
T Consensus 25 ~~~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp CGGGGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred hhcccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 34455666778888887775 567778999999999999999999999998 3 3346777777765543
No 39
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=57.07 E-value=8.1 Score=28.95 Aligned_cols=64 Identities=8% Similarity=0.040 Sum_probs=46.8
Q ss_pred ccccchHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-C--CCCceeeccccccCC
Q psy7662 34 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-R--TGPTFLSLLKFKSNK 98 (220)
Q Consensus 34 rk~~f~kel~~mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-r--rgk~~l~dlrfd~~K 98 (220)
++.+-..-|+.++=-.|- ..-..+....|.+++..||.++++.|..+| . |..+..+|+.++-++
T Consensus 27 ~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~ 93 (103)
T 2yfw_B 27 IQGITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93 (103)
T ss_dssp ---CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 334555567777777775 566778999999999999999999999998 3 334677777766554
No 40
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=57.05 E-value=10 Score=28.22 Aligned_cols=47 Identities=15% Similarity=0.009 Sum_probs=40.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CceeeccccccCCc
Q psy7662 53 RNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTG--PTFLSLLKFKSNKN 99 (220)
Q Consensus 53 ~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrg--k~~l~dlrfd~~K~ 99 (220)
.+..|+++..|-+++-+|+.+++..+..+| +.| -++.+|++-..+|+
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 468899999999999999999999999999 445 47888888777765
No 41
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=56.39 E-value=6.9 Score=27.92 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhc-CC--CCCCcchhHhhhc---cChhHHHHHHHHHHHH
Q psy7662 158 FLVDMTQKAMEMG-RT--GRVQVEDIVFLVR---KDNRKYARVKDLLTMN 201 (220)
Q Consensus 158 ~I~~l~~~A~~~a-rr--gki~~eDl~FllR---kD~~Kl~Rv~~lL~~k 201 (220)
-|..+|.+|.-.| ++ ..|+.+||.-+++ ..+.|-++...|+.|+
T Consensus 39 Dl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 39 ELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence 4788999998776 33 4799999999886 3456677788888875
No 42
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=56.25 E-value=16 Score=28.22 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=38.1
Q ss_pred HHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhccChh
Q psy7662 129 ELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVRKDNR 189 (220)
Q Consensus 129 EI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllRkD~~ 189 (220)
-|..+|---+....-...+.-++-.++-.+..+++..|.+.| ++.+|+.+||.-++|+|..
T Consensus 27 ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeE 90 (120)
T 2f8n_G 27 RMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEE 90 (120)
T ss_dssp HHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred HHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHH
Confidence 355566555554444444444555554444455555555544 5679999999999999964
No 43
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=55.89 E-value=9.9 Score=29.61 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---cCCCCCCcchhHhhhccChh
Q psy7662 147 SVDILEDAVIDFLVDMTQKAMEM---GRTGRVQVEDIVFLVRKDNR 189 (220)
Q Consensus 147 Tv~l~EdIV~e~I~~l~~~A~~~---arrgki~~eDl~FllRkD~~ 189 (220)
+.-+|-.++-.+..+++..|.+. +++.+|+.+||.-++|+|..
T Consensus 46 A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeE 91 (123)
T 2nqb_C 46 APVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHH
Confidence 33344444433444455555444 45679999999999999964
No 44
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=54.37 E-value=10 Score=29.81 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhHhhhccChh
Q psy7662 158 FLVDMTQKAMEMGRTGRVQVEDIVFLVRKDNR 189 (220)
Q Consensus 158 ~I~~l~~~A~~~arrgki~~eDl~FllRkD~~ 189 (220)
.|.++.-++....++.+|+.+||.-++|+|..
T Consensus 65 EIlelAgn~A~~~k~krItprhi~lAI~nDeE 96 (128)
T 1f66_C 65 EVLELAGNASKDLKVKRITPRHLQLAIRGDEE 96 (128)
T ss_dssp HHHHHHHHHHHTTTCSEECHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHhcCCCeEcHHHHHHHHhccHH
Confidence 33444444444445679999999999999964
No 45
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=54.03 E-value=16 Score=24.80 Aligned_cols=45 Identities=7% Similarity=0.113 Sum_probs=34.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCCC--ceeeccccc
Q psy7662 51 DDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTGP--TFLSLLKFK 95 (220)
Q Consensus 51 D~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrgk--~~l~dlrfd 95 (220)
++..-..+++.+|.+.+..||..+...|..+| +.|+ +.-.|+..+
T Consensus 16 ~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A 63 (68)
T 1b67_A 16 GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELA 63 (68)
T ss_dssp TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 34667889999999999999999999999998 3343 344454443
No 46
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=53.82 E-value=11 Score=29.63 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---cCCCCCCcchhHhhhccChh
Q psy7662 149 DILEDAVIDFLVDMTQKAMEM---GRTGRVQVEDIVFLVRKDNR 189 (220)
Q Consensus 149 ~l~EdIV~e~I~~l~~~A~~~---arrgki~~eDl~FllRkD~~ 189 (220)
-+|-.++-.++.+++..|.+. .++.+|+.+||.-++|+|..
T Consensus 50 VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeE 93 (131)
T 1id3_C 50 VYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDE 93 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHH
Confidence 333333333334444444444 45679999999999999964
No 47
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=53.30 E-value=11 Score=29.52 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCCcchhHhhhccChh
Q psy7662 146 ESVDILEDAVIDFLVDMTQKAMEM---GRTGRVQVEDIVFLVRKDNR 189 (220)
Q Consensus 146 ETv~l~EdIV~e~I~~l~~~A~~~---arrgki~~eDl~FllRkD~~ 189 (220)
.+.-+|-.++-.+..+++..|.+. +.+.+|+.+||.-++|+|..
T Consensus 47 ~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeE 93 (129)
T 1tzy_A 47 GAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHH
Confidence 333344444444444555555544 45679999999999999964
No 48
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=50.82 E-value=23 Score=25.98 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=40.7
Q ss_pred HHHhhhh-cC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCcchhHh
Q psy7662 130 LRCMMYG-FG-DDRNPYTESVDILEDAVIDFLVDMTQKAMEMGR---TGRVQVEDIVF 182 (220)
Q Consensus 130 I~~MMyg-fG-D~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~ar---rgki~~eDl~F 182 (220)
|..+|+- |. |...-..+++.++-+++.-|+.+.+.+|...|. .+.+.++||-=
T Consensus 18 i~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 18 VSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp HHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred HHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 4445543 33 556667899999999999999999999998874 35888888753
No 49
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=50.46 E-value=12 Score=30.22 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCCCCcchhHhhhccChh
Q psy7662 150 ILEDAVIDFLVDMTQKAMEM---GRTGRVQVEDIVFLVRKDNR 189 (220)
Q Consensus 150 l~EdIV~e~I~~l~~~A~~~---arrgki~~eDl~FllRkD~~ 189 (220)
+|-.++-.+..+++..|.+. +++.+|+.+||.-++|+|..
T Consensus 70 yLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeE 112 (149)
T 2f8n_K 70 YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEE 112 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHH
Confidence 33333333334444444444 45679999999999999964
No 50
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=49.08 E-value=14 Score=28.75 Aligned_cols=47 Identities=2% Similarity=0.020 Sum_probs=40.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CceeeccccccCCc
Q psy7662 53 RNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTG--PTFLSLLKFKSNKN 99 (220)
Q Consensus 53 ~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrg--k~~l~dlrfd~~K~ 99 (220)
....|+++..|-+++-.|+.+++..+..+| ..| -++.+|++-..+|+
T Consensus 46 ~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~ 95 (113)
T 4dra_A 46 MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS 95 (113)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC
Confidence 458899999999999999999999999999 345 47888888877775
No 51
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=48.79 E-value=16 Score=25.66 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=37.4
Q ss_pred hhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCC--Cceeeccccc
Q psy7662 45 MMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTG--PTFLSLLKFK 95 (220)
Q Consensus 45 mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrg--k~~l~dlrfd 95 (220)
++=..|= ..=.|..+..|=|.+..|..+++..|..+| ..| .++.+|++-+
T Consensus 10 iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLA 62 (68)
T 1taf_A 10 ILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLA 62 (68)
T ss_dssp HHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 3333443 355678889999999999999999999999 455 4677777653
No 52
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=47.99 E-value=19 Score=28.88 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=43.7
Q ss_pred HHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCCcchhHhhhccCh
Q psy7662 131 RCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG--------RTGRVQVEDIVFLVRKDN 188 (220)
Q Consensus 131 ~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a--------rrgki~~eDl~FllRkD~ 188 (220)
..|||+..+..-|..|.|-.-=|.|+.-|.+|+..|.... .|=++-|.|++=++-++|
T Consensus 2 ~~~~~~~~~~~~P~~e~Vvr~TE~ITk~IqeLl~AaQ~~~~~sfvpcserI~~AV~el~aLfp~~p 67 (135)
T 2jx0_A 2 SHMLDGDPDPGLPSTEDVILKTEQVTKNIQELLRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRP 67 (135)
T ss_dssp ---CCSSCBSSCSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCSSB
T ss_pred CcccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhccccCccccHHHHHHHHHHHHHHhcCCCC
Confidence 3699999999999999999999999999999998887642 222446777777764444
No 53
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=45.26 E-value=50 Score=25.94 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=49.8
Q ss_pred cccccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhc
Q psy7662 122 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVR 185 (220)
Q Consensus 122 rk~~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllR 185 (220)
++..|.-=|-.+|--.+=..--..+++.+|..+|.+..-.+..+|..++ +|..|+..||-.++|
T Consensus 31 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 31 RKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp CCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 4556666666666554433445788999999999999999999999987 466899999999887
No 54
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=43.76 E-value=23 Score=25.08 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=33.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhcC---CCCceeeccccc
Q psy7662 53 RNPYTESVDILEDAVIDFLVDMTQKAMEMGR---TGPTFLSLLKFK 95 (220)
Q Consensus 53 ~~P~~eTv~llEeIv~~yI~~l~~~A~~~ar---rgk~~l~dlrfd 95 (220)
.+-.++....|=+-|..+|.++++.|.++++ |.+.+.+|+..+
T Consensus 22 ~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~A 67 (70)
T 1taf_B 22 GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMS 67 (70)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 3456788889999999999999999999983 445677776543
No 55
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=42.41 E-value=52 Score=25.93 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=50.0
Q ss_pred cccccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhc
Q psy7662 122 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVR 185 (220)
Q Consensus 122 rk~~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllR 185 (220)
++..|.-=|-.+|--.+=..--..+++.+|..+|.+..-.+..+|..++ +|..|+..||-.++|
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4456666666666555433446788999999999999999999999987 466899999999887
No 56
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=41.40 E-value=35 Score=23.83 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=32.7
Q ss_pred HHHHhhh-hcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7662 41 ELRCMMY-GFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG 82 (220)
Q Consensus 41 el~~mmy-gfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a 82 (220)
=|.-+|= ..+|. .-..++..+|-+.+.+||..|..+|.+.|
T Consensus 9 ~V~rI~K~~~p~~-~is~~A~~~i~~~~~~Fi~~la~eA~~~a 50 (76)
T 3b0c_W 9 TLRKIIKKHKPHL-RLAANTDLLVHLSFLLFLHRLAEEARTNA 50 (76)
T ss_dssp HHHHHHHHHCTTC-EECTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555 44653 45678999999999999999999999998
No 57
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=40.10 E-value=54 Score=23.52 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=36.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhc
Q psy7662 141 RNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVR 185 (220)
Q Consensus 141 ~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllR 185 (220)
..=..+.+..+.+..-.|+..+...|..+| +|..|..+|+-.+.|
T Consensus 24 ~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 24 LRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 444567788899999999999988887765 677899999988755
No 58
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=39.35 E-value=48 Score=24.09 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=35.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhc
Q psy7662 142 NPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVR 185 (220)
Q Consensus 142 ~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllR 185 (220)
.=..+.+..+.+..-.|+.++...|..+| +|..|..+|+-.+.|
T Consensus 27 R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 27 NWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 44567888999999999999998887775 677899999887654
No 59
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=38.15 E-value=36 Score=24.55 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=40.2
Q ss_pred HHHhhhhcC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCC--Cceeecccccc
Q psy7662 42 LRCMMYGFG-DDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTG--PTFLSLLKFKS 96 (220)
Q Consensus 42 l~~mmygfG-D~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrg--k~~l~dlrfd~ 96 (220)
|+.+|=.-| |...-..+++.+|-+....||..|+..|..+| +.| .+.-+|+..+-
T Consensus 14 i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al 72 (93)
T 1n1j_A 14 VARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAM 72 (93)
T ss_dssp HHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 444454443 45677889999999999999999999999998 333 35555655543
No 60
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=37.08 E-value=39 Score=27.99 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=43.6
Q ss_pred chHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCC--Cceeeccccc
Q psy7662 38 FSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTG--PTFLSLLKFK 95 (220)
Q Consensus 38 f~kel~~mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrg--k~~l~dlrfd 95 (220)
-..=|..+|=..|....-..++..+|-+.+..||..|...|.+.| +.| .+.-+|+..+
T Consensus 17 P~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~A 77 (179)
T 1jfi_B 17 PRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQA 77 (179)
T ss_dssp CHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 344567777777655677889999999999999999999999998 333 3455555443
No 61
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=36.96 E-value=35 Score=26.51 Aligned_cols=53 Identities=8% Similarity=0.066 Sum_probs=40.2
Q ss_pred HHHhhhh-cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCC--Cceeecccc
Q psy7662 42 LRCMMYG-FGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTG--PTFLSLLKF 94 (220)
Q Consensus 42 l~~mmyg-fGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrg--k~~l~dlrf 94 (220)
|+.+|=. .-|...-..+++.+|-+.+..||..|+..|..+| +.| .+.-+|+..
T Consensus 15 I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~ 71 (128)
T 2byk_B 15 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQ 71 (128)
T ss_dssp HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred HHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 5556663 4467788899999999999999999999999998 323 345555544
No 62
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=36.67 E-value=46 Score=25.04 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=42.8
Q ss_pred ccccHHHHHHhhhhcC---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhc
Q psy7662 123 KRMFSKELRCMMYGFG---DDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVR 185 (220)
Q Consensus 123 k~~f~kEI~~MMygfG---D~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllR 185 (220)
+--|..=++.+.-.|. ..-.=..+.+..+.+..-.|+..+...|..+| +|..|...|+-.+.|
T Consensus 30 k~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 30 RMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp HHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 3445554444443332 23444567888999999999999988887775 677899999987654
No 63
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=36.22 E-value=43 Score=24.49 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=49.3
Q ss_pred cccccchHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcC-CC--CceeeccccccC
Q psy7662 33 GRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGR-TG--PTFLSLLKFKSN 97 (220)
Q Consensus 33 ~rk~~f~kel~~mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~ar-rg--k~~l~dlrfd~~ 97 (220)
+...+-..=|+.+|=.-+|...-..++.-+|-..+-.||.+|+..|...|+ .+ .+.-.|+..+-.
T Consensus 16 ~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~ 83 (97)
T 1n1j_B 16 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 83 (97)
T ss_dssp ----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHh
Confidence 334455667888888889988999999999999999999999999999983 33 355566665433
No 64
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=34.95 E-value=26 Score=28.15 Aligned_cols=47 Identities=4% Similarity=-0.001 Sum_probs=40.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CceeeccccccCCc
Q psy7662 53 RNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTG--PTFLSLLKFKSNKN 99 (220)
Q Consensus 53 ~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrg--k~~l~dlrfd~~K~ 99 (220)
....|+++..|-+++-.|+.+++..+..+| +.| -+..+|+.-..+|+
T Consensus 38 ~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn 87 (140)
T 3vh5_A 38 VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 457899999999999999999999999999 445 47889998888885
No 65
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=34.73 E-value=44 Score=24.20 Aligned_cols=52 Identities=12% Similarity=0.273 Sum_probs=38.1
Q ss_pred HHHhhh-hcCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCcchhH
Q psy7662 130 LRCMMY-GFGD-DRNPYTESVDILEDAVIDFLVDMTQKAMEMGR---TGRVQVEDIV 181 (220)
Q Consensus 130 I~~MMy-gfGD-~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~ar---rgki~~eDl~ 181 (220)
|..++. .|.| ...-..+++.++-+++.-|+.+-+.+|...|. .+.|.++||-
T Consensus 14 I~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LE 70 (81)
T 3b0b_C 14 VERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVE 70 (81)
T ss_dssp HHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHH
Confidence 444444 4442 33447799999999999999999999999862 2467888774
No 66
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=32.79 E-value=47 Score=27.08 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=42.4
Q ss_pred cHHHHHHhhhhcCC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhc
Q psy7662 126 FSKELRCMMYGFGD--DRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVR 185 (220)
Q Consensus 126 f~kEI~~MMygfGD--~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllR 185 (220)
|..=|+.+.--|.+ .-.=..+.+..|.+..-.|+.+|...|..+| +|..|..+|+-.+.|
T Consensus 83 F~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 83 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 33334444444442 2334567888999999999999999988875 677899999877654
No 67
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=30.76 E-value=79 Score=25.04 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=41.8
Q ss_pred cHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhc
Q psy7662 126 FSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVR 185 (220)
Q Consensus 126 f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllR 185 (220)
|..=++.+.--|...-.=..+.+..|.+..-.|+..|...|..+| +|..|...|+-.+.|
T Consensus 68 F~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 68 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp HHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 333333333334333445567888899999999999988887775 577899999987754
No 68
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=30.12 E-value=58 Score=26.05 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=36.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcchhHhhhc
Q psy7662 141 RNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGRVQVEDIVFLVR 185 (220)
Q Consensus 141 ~~P~~ETv~l~EdIV~e~I~~l~~~A~~~a---rrgki~~eDl~FllR 185 (220)
-.=..+.+..|.+..-.|+.+|...|..+| +|..|..+|+-.+.|
T Consensus 84 ~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 84 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 344567888999999999999998888775 577899999877654
No 69
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=29.43 E-value=75 Score=24.60 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCC-cchhHhhhcc
Q psy7662 144 YTESVDILEDAVIDFLVDMTQKAMEMG-----RTGRVQ-VEDIVFLVRK 186 (220)
Q Consensus 144 ~~ETv~l~EdIV~e~I~~l~~~A~~~a-----rrgki~-~eDl~FllRk 186 (220)
..|+..-+.+-....|...+.++.+.= .-|+|+ .|||.||.|+
T Consensus 11 ~s~~~~~~k~~Fr~eis~~Vv~~L~pYRk~~Ck~GRITs~EDFK~LaRK 59 (112)
T 2a7o_A 11 SSELAKKSKEVFRKEMSQFIVQCLNPYRKPDCKVGRITTTEDFKHLARK 59 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTCSSSBCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccCccccCccccHHHHHHHHHH
Confidence 445555566666666777777776652 247766 9999999885
No 70
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=28.94 E-value=61 Score=24.60 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=27.4
Q ss_pred CCCCCCcchhHhhhccChhHHHHHHHHHHHH
Q psy7662 171 RTGRVQVEDIVFLVRKDNRKYARVKDLLTMN 201 (220)
Q Consensus 171 rrgki~~eDl~FllRkD~~Kl~Rv~~lL~~k 201 (220)
++|.++..|..-+++=|+.|.+||.++|.-+
T Consensus 72 k~g~lkk~dA~~l~kID~~K~~rIydff~~~ 102 (108)
T 2cuj_A 72 KQGGLRLAQARALIKIDVNKTRKIYDFLIRE 102 (108)
T ss_dssp HSSCCCHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred HcCCCcHHHHHHHhcccHHHHHHHHHHHHHc
Confidence 4577999999999999999999999998643
No 71
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=28.51 E-value=40 Score=23.11 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhc-CC--CCCCcchhHhhhcc
Q psy7662 156 IDFLVDMTQKAMEMG-RT--GRVQVEDIVFLVRK 186 (220)
Q Consensus 156 ~e~I~~l~~~A~~~a-rr--gki~~eDl~FllRk 186 (220)
---|..+|+.|...| ++ ..|+.+||.-++++
T Consensus 37 GADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~ 70 (83)
T 3aji_B 37 GADINSICQESGMLAVRENRYIVLAKDFEKAYKT 70 (83)
T ss_dssp HHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 345677899999887 43 37999999988764
No 72
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=28.42 E-value=33 Score=26.81 Aligned_cols=45 Identities=4% Similarity=0.020 Sum_probs=32.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhc---CCCCceeeccccccC
Q psy7662 53 RNPYTESVDILEDAVIDFLVDMTQKAMEMG---RTGPTFLSLLKFKSN 97 (220)
Q Consensus 53 ~~P~~eTv~llEeIv~~yI~~l~~~A~~~a---rrgk~~l~dlrfd~~ 97 (220)
.--..+...-+-+++.+|+.++++.|..++ +|..++.+|+.++-+
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 334445566677777888888999998888 445678888877543
No 73
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=23.92 E-value=29 Score=23.57 Aligned_cols=33 Identities=24% Similarity=0.103 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhc-CC--CCCCcchhHhhhcc
Q psy7662 154 AVIDFLVDMTQKAMEMG-RT--GRVQVEDIVFLVRK 186 (220)
Q Consensus 154 IV~e~I~~l~~~A~~~a-rr--gki~~eDl~FllRk 186 (220)
+.---|..+|..|...| ++ ..|+.+||.-++++
T Consensus 37 ~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 37 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 33345778899998877 33 37999999988764
No 74
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=23.59 E-value=93 Score=22.45 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=30.5
Q ss_pred hcCC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7662 48 GFGD-DRNPYTESVDILEDAVIDFLVDMTQKAMEMG 82 (220)
Q Consensus 48 gfGD-~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a 82 (220)
.|.| ...-.++++.++-+++.-|+.+-+++|...|
T Consensus 21 ~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a 56 (81)
T 3b0b_C 21 HFRDGRTRVNGDALLLMAELLKVFVREAAARAARQA 56 (81)
T ss_dssp HCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6664 4456899999999999999999999999988
No 75
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=23.48 E-value=77 Score=23.15 Aligned_cols=36 Identities=11% Similarity=0.312 Sum_probs=31.8
Q ss_pred hcC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7662 48 GFG-DDRNPYTESVDILEDAVIDFLVDMTQKAMEMGR 83 (220)
Q Consensus 48 gfG-D~~~P~~eTv~llEeIv~~yI~~l~~~A~~~ar 83 (220)
.|. |...-.++++.++-+++.-|+.+.+.+|...|.
T Consensus 25 ~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~ 61 (84)
T 4dra_E 25 HFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQ 61 (84)
T ss_dssp TCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 667888999999999999999999999999883
No 76
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=22.34 E-value=62 Score=23.56 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=26.9
Q ss_pred CCCCCCcchhHhhhccChhHHHHHHHHHHHH
Q psy7662 171 RTGRVQVEDIVFLVRKDNRKYARVKDLLTMN 201 (220)
Q Consensus 171 rrgki~~eDl~FllRkD~~Kl~Rv~~lL~~k 201 (220)
++|.++..|..-+++=|+.|.+||.++|.-+
T Consensus 54 ~~g~l~k~da~~~~kiD~~K~~~iydf~~~~ 84 (90)
T 2aqe_A 54 KQGGLRLAQARALIKIDVNKTRKIYDFLIRE 84 (90)
T ss_dssp HHSCCCHHHHHTTSSSSSHHHHHHHHHHHHT
T ss_pred HcCCCcHHHHHHHHcccHHHHHHHHHHHHHc
Confidence 4467899999999999999999999998653
No 77
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=21.85 E-value=1.6e+02 Score=21.02 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=38.8
Q ss_pred chHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCc--eeeccc
Q psy7662 38 FSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTGPT--FLSLLK 93 (220)
Q Consensus 38 f~kel~~mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~a-rrgk~--~l~dlr 93 (220)
|..=+|...-.|....-=..+.+..|.+..-.|+.++...|...| +.|+. ...|+.
T Consensus 9 F~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiq 67 (77)
T 2hue_B 9 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQ 67 (77)
T ss_dssp HHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHH
Confidence 444445554445434555678899999999999999999999988 45543 344443
Done!