Your job contains 1 sequence.
>psy7662
MEDDQFKSNKNVCVFSFQFEEEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESV
DILEDAVIDFLVDMTQKAMEMGRTGPTFLSLLKFKSNKNVCVFSFQFEEEEQDTPVNLPS
GRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDI
VFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKFVTNA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7662
(220 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0032847 - symbol:Taf13 "TBP-associated factor 13" ... 444 6.6e-42 1
UNIPROTKB|Q5ZLI0 - symbol:TAF13 "Uncharacterized protein"... 423 1.1e-39 1
UNIPROTKB|Q148M7 - symbol:TAF13 "Transcription initiation... 420 2.3e-39 1
UNIPROTKB|E2QZK3 - symbol:TAF13 "Uncharacterized protein"... 420 2.3e-39 1
UNIPROTKB|Q15543 - symbol:TAF13 "Transcription initiation... 420 2.3e-39 1
UNIPROTKB|F1S5Y9 - symbol:LOC100624071 "Uncharacterized p... 420 2.3e-39 1
MGI|MGI:1913500 - symbol:Taf13 "TAF13 RNA polymerase II, ... 420 2.3e-39 1
RGD|1305398 - symbol:Taf13 "TAF13 RNA polymerase II, TATA... 420 2.3e-39 1
ZFIN|ZDB-GENE-030131-2873 - symbol:taf13 "TAF13 RNA polym... 411 2.1e-38 1
DICTYBASE|DDB_G0292838 - symbol:taf13 "TFIID subunit" spe... 296 3.2e-26 1
WB|WBGene00006397 - symbol:taf-13 species:6239 "Caenorhab... 275 5.3e-24 1
TAIR|locus:2196040 - symbol:TAF13 "TBP-associated factor ... 264 7.8e-23 1
POMBASE|SPCC1494.02c - symbol:taf13 "transcription factor... 184 2.3e-14 1
ASPGD|ASPL0000052310 - symbol:AN1353 species:162425 "Emer... 149 1.2e-10 1
CGD|CAL0002660 - symbol:TAF19 species:5476 "Candida albic... 147 2.0e-10 1
UNIPROTKB|Q5A5A6 - symbol:TAF13 "Putative uncharacterized... 147 2.0e-10 1
SGD|S000004564 - symbol:TAF13 "TFIID subunit (19 kDa)" sp... 136 3.0e-09 1
UNIPROTKB|O75486 - symbol:SUPT3H "Transcription initiatio... 147 2.3e-08 1
UNIPROTKB|F1N9T6 - symbol:SUPT3H "Uncharacterized protein... 144 5.0e-08 1
ZFIN|ZDB-GENE-040718-370 - symbol:supt3h "suppressor of T... 140 1.8e-07 1
POMBASE|SPCC61.02 - symbol:spt3 "SAGA complex subunit Spt... 123 1.5e-05 1
ASPGD|ASPL0000059685 - symbol:sptC species:162425 "Emeric... 113 0.00027 1
>FB|FBgn0032847 [details] [associations]
symbol:Taf13 "TBP-associated factor 13" species:7227
"Drosophila melanogaster" [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=ISS] [GO:0005669
"transcription factor TFIID complex" evidence=ISS] [GO:0001075 "RNA
polymerase II core promoter sequence-specific DNA binding
transcription factor activity involved in preinitiation complex
assembly" evidence=ISS] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] InterPro:IPR003195 InterPro:IPR009072
Pfam:PF02269 EMBL:AE014134 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0005669 GO:GO:0051123 PANTHER:PTHR11380 CTD:6884
eggNOG:COG5248 GeneTree:ENSGT00390000012981 KO:K03127 OMA:KYARVKD
HSSP:Q15543 EMBL:AY071439 RefSeq:NP_610024.1 UniGene:Dm.5933
SMR:Q9VIP1 IntAct:Q9VIP1 MINT:MINT-806644 STRING:Q9VIP1
EnsemblMetazoa:FBtr0081340 GeneID:35297 KEGG:dme:Dmel_CG10756
UCSC:CG10756-RA FlyBase:FBgn0032847 InParanoid:Q9VIP1
OrthoDB:EOG4C2FT1 GenomeRNAi:35297 NextBio:792837 Uniprot:Q9VIP1
Length = 136
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 84/114 (73%), Positives = 101/114 (88%)
Query: 105 FQFEEE-EQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 163
F F+++ E D V SGRKR+FSKELRCMM+GFGDD+NPYTE+VD+LED VI+++ + T
Sbjct: 16 FNFDDDAEDDQFVATNSGRKRLFSKELRCMMFGFGDDKNPYTETVDLLEDLVIEYIAETT 75
Query: 164 QKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKFV 217
+AME+GRTGRVQVEDI+FLVRKD RKYARVKDLLTMNEELKKARKAFDE+K+V
Sbjct: 76 HRAMEIGRTGRVQVEDIIFLVRKDPRKYARVKDLLTMNEELKKARKAFDEIKYV 129
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 44/70 (62%), Positives = 58/70 (82%)
Query: 17 FQFEEE-EQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 75
F F+++ E D V SGRKR+FSKELRCMM+GFGDD+NPYTE+VD+LED VI+++ + T
Sbjct: 16 FNFDDDAEDDQFVATNSGRKRLFSKELRCMMFGFGDDKNPYTETVDLLEDLVIEYIAETT 75
Query: 76 QKAMEMGRTG 85
+AME+GRTG
Sbjct: 76 HRAMEIGRTG 85
>UNIPROTKB|Q5ZLI0 [details] [associations]
symbol:TAF13 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005669
"transcription factor TFIID complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] InterPro:IPR003195 InterPro:IPR009072 Pfam:PF02269
GO:GO:0005730 GO:GO:0003677 GO:GO:0006366 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0005669 PANTHER:PTHR11380 CTD:6884
eggNOG:COG5248 GeneTree:ENSGT00390000012981 HOGENOM:HOG000237827
HOVERGEN:HBG055385 KO:K03127 OMA:KYARVKD OrthoDB:EOG4TQMBJ
EMBL:AADN02032824 EMBL:AJ719329 EMBL:AJ719754 IPI:IPI00573516
RefSeq:NP_001006252.1 UniGene:Gga.4597 SMR:Q5ZLI0 STRING:Q5ZLI0
Ensembl:ENSGALT00000024503 GeneID:418365 KEGG:gga:418365
InParanoid:Q5ZLI0 NextBio:20821553 Uniprot:Q5ZLI0
Length = 124
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 82/113 (72%), Positives = 95/113 (84%)
Query: 107 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 163
FEE+ ++ L G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEDSEEAGGGLDGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 164 QKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
KAM +GR GRVQVEDIVFL+RKD RK+ARVKDLLTMNEELK+ARKAFDE +
Sbjct: 70 HKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 19 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 75
FEE+ ++ L G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEDSEEAGGGLDGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 76 QKAMEMGRTG 85
KAM +GR G
Sbjct: 70 HKAMSIGRQG 79
>UNIPROTKB|Q148M7 [details] [associations]
symbol:TAF13 "Transcription initiation factor TFIID subunit
13" species:9913 "Bos taurus" [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005669 "transcription factor TFIID complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR003195 InterPro:IPR009072 Pfam:PF02269 GO:GO:0005730
GO:GO:0006355 GO:GO:0003677 GO:GO:0006366 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0005669 PANTHER:PTHR11380 EMBL:BC118136
IPI:IPI00705771 RefSeq:NP_001069065.1 UniGene:Bt.26935
ProteinModelPortal:Q148M7 SMR:Q148M7 STRING:Q148M7
Ensembl:ENSBTAT00000044882 GeneID:513065 KEGG:bta:513065 CTD:6884
eggNOG:COG5248 GeneTree:ENSGT00390000012981 HOGENOM:HOG000237827
HOVERGEN:HBG055385 InParanoid:Q148M7 KO:K03127 OMA:KYARVKD
OrthoDB:EOG4TQMBJ NextBio:20870688 Uniprot:Q148M7
Length = 124
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 82/113 (72%), Positives = 94/113 (83%)
Query: 107 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 163
FEEE ++ G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 164 QKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
KAM +GR GRVQVEDIVFL+RKD RK+ARVKDLLTMNEELK+ARKAFDE +
Sbjct: 70 HKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 46/70 (65%), Positives = 54/70 (77%)
Query: 19 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 75
FEEE ++ G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 76 QKAMEMGRTG 85
KAM +GR G
Sbjct: 70 HKAMSIGRQG 79
>UNIPROTKB|E2QZK3 [details] [associations]
symbol:TAF13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005669
"transcription factor TFIID complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR003195
InterPro:IPR009072 Pfam:PF02269 GO:GO:0005730 GO:GO:0003677
GO:GO:0006366 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0005669
PANTHER:PTHR11380 CTD:6884 GeneTree:ENSGT00390000012981 KO:K03127
OMA:KYARVKD EMBL:AAEX03004736 RefSeq:NP_001238967.1 UniGene:Cfa.399
Ensembl:ENSCAFT00000031589 GeneID:100688743 KEGG:cfa:100688743
NextBio:20852536 Uniprot:E2QZK3
Length = 124
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 82/113 (72%), Positives = 94/113 (83%)
Query: 107 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 163
FEEE ++ G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 164 QKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
KAM +GR GRVQVEDIVFL+RKD RK+ARVKDLLTMNEELK+ARKAFDE +
Sbjct: 70 HKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 46/70 (65%), Positives = 54/70 (77%)
Query: 19 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 75
FEEE ++ G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 76 QKAMEMGRTG 85
KAM +GR G
Sbjct: 70 HKAMSIGRQG 79
>UNIPROTKB|Q15543 [details] [associations]
symbol:TAF13 "Transcription initiation factor TFIID subunit
13" species:9606 "Homo sapiens" [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006352
"DNA-dependent transcription, initiation" evidence=NAS] [GO:0005669
"transcription factor TFIID complex" evidence=IDA;NAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IC;TAS] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IC;TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR003195 InterPro:IPR009072
Pfam:PF02269 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0005730
EMBL:CH471122 GO:GO:0003677 GO:GO:0003700 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0006368 GO:GO:0006367 Reactome:REACT_1788
GO:GO:0005669 PANTHER:PTHR11380 PDB:1BH8 PDB:1BH9 PDBsum:1BH8
PDBsum:1BH9 CTD:6884 eggNOG:COG5248 HOGENOM:HOG000237827
HOVERGEN:HBG055385 KO:K03127 OMA:KYARVKD OrthoDB:EOG4TQMBJ
EMBL:X84003 EMBL:AK312158 EMBL:BX679664 EMBL:BC121180
IPI:IPI00018108 PIR:S54782 RefSeq:NP_005636.1 UniGene:Hs.632426
ProteinModelPortal:Q15543 SMR:Q15543 DIP:DIP-900N IntAct:Q15543
STRING:Q15543 PhosphoSite:Q15543 DMDM:3024706 PRIDE:Q15543
Ensembl:ENST00000338366 Ensembl:ENST00000461096 GeneID:6884
KEGG:hsa:6884 UCSC:uc001dwm.1 GeneCards:GC01M109605 HGNC:HGNC:11546
HPA:HPA044492 MIM:600774 neXtProt:NX_Q15543 PharmGKB:PA36321
InParanoid:Q15543 PhylomeDB:Q15543 EvolutionaryTrace:Q15543
GenomeRNAi:6884 NextBio:26895 Bgee:Q15543 CleanEx:HS_TAF13
Genevestigator:Q15543 GermOnline:ENSG00000197780 Uniprot:Q15543
Length = 124
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 82/113 (72%), Positives = 94/113 (83%)
Query: 107 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 163
FEEE ++ G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 164 QKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
KAM +GR GRVQVEDIVFL+RKD RK+ARVKDLLTMNEELK+ARKAFDE +
Sbjct: 70 HKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 46/70 (65%), Positives = 54/70 (77%)
Query: 19 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 75
FEEE ++ G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 76 QKAMEMGRTG 85
KAM +GR G
Sbjct: 70 HKAMSIGRQG 79
>UNIPROTKB|F1S5Y9 [details] [associations]
symbol:LOC100624071 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR003195 InterPro:IPR009072
Pfam:PF02269 GO:GO:0006366 Gene3D:1.10.20.10 SUPFAM:SSF47113
PANTHER:PTHR11380 CTD:6884 GeneTree:ENSGT00390000012981 KO:K03127
OMA:KYARVKD EMBL:CU207233 EMBL:FP102943 RefSeq:NP_001230568.1
RefSeq:XP_003358540.1 UniGene:Ssc.56620 Ensembl:ENSSSCT00000007490
Ensembl:ENSSSCT00000022456 GeneID:100157095 GeneID:100624071
KEGG:ssc:100157095 KEGG:ssc:100624071 Uniprot:F1S5Y9
Length = 124
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 82/113 (72%), Positives = 94/113 (83%)
Query: 107 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 163
FEEE ++ G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEESEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 164 QKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
KAM +GR GRVQVEDIVFL+RKD RK+ARVKDLLTMNEELK+ARKAFDE +
Sbjct: 70 HKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 46/70 (65%), Positives = 54/70 (77%)
Query: 19 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 75
FEEE ++ G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEESEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 76 QKAMEMGRTG 85
KAM +GR G
Sbjct: 70 HKAMSIGRQG 79
>MGI|MGI:1913500 [details] [associations]
symbol:Taf13 "TAF13 RNA polymerase II, TATA box binding
protein (TBP)-associated factor" species:10090 "Mus musculus"
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005669 "transcription factor TFIID complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR003195 InterPro:IPR009072 Pfam:PF02269
MGI:MGI:1913500 GO:GO:0005634 GO:GO:0005730 GO:GO:0006355
GO:GO:0003677 GO:GO:0006366 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0005669 PANTHER:PTHR11380 CTD:6884 eggNOG:COG5248
GeneTree:ENSGT00390000012981 HOGENOM:HOG000237827
HOVERGEN:HBG055385 KO:K03127 OMA:KYARVKD OrthoDB:EOG4TQMBJ
EMBL:AK007339 EMBL:AK076595 EMBL:AK160171 EMBL:BC021447
IPI:IPI00138961 RefSeq:NP_079720.1 UniGene:Mm.24431
ProteinModelPortal:P61216 SMR:P61216 IntAct:P61216 STRING:P61216
PhosphoSite:P61216 PRIDE:P61216 Ensembl:ENSMUST00000143054
GeneID:99730 KEGG:mmu:99730 InParanoid:P61216 NextBio:354095
Bgee:P61216 Genevestigator:P61216 GermOnline:ENSMUSG00000048100
Uniprot:P61216
Length = 124
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 82/113 (72%), Positives = 94/113 (83%)
Query: 107 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 163
FEEE ++ G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 164 QKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
KAM +GR GRVQVEDIVFL+RKD RK+ARVKDLLTMNEELK+ARKAFDE +
Sbjct: 70 HKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 46/70 (65%), Positives = 54/70 (77%)
Query: 19 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 75
FEEE ++ G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 76 QKAMEMGRTG 85
KAM +GR G
Sbjct: 70 HKAMSIGRQG 79
>RGD|1305398 [details] [associations]
symbol:Taf13 "TAF13 RNA polymerase II, TATA box binding protein
(TBP)-associated factor" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR003195
InterPro:IPR009072 Pfam:PF02269 RGD:1305398 GO:GO:0005730
GO:GO:0003677 GO:GO:0006366 Gene3D:1.10.20.10 SUPFAM:SSF47113
EMBL:CH473952 GO:GO:0005669 PANTHER:PTHR11380 eggNOG:COG5248
GeneTree:ENSGT00390000012981 HOGENOM:HOG000237827
HOVERGEN:HBG055385 OMA:KYARVKD OrthoDB:EOG4TQMBJ EMBL:BC166866
IPI:IPI00203033 UniGene:Rn.15054 SMR:B2RYQ7 STRING:B2RYQ7
Ensembl:ENSRNOT00000027530 UCSC:RGD:1305398 Genevestigator:B2RYQ7
Uniprot:B2RYQ7
Length = 124
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 82/113 (72%), Positives = 94/113 (83%)
Query: 107 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 163
FEEE ++ G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 164 QKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
KAM +GR GRVQVEDIVFL+RKD RK+ARVKDLLTMNEELK+ARKAFDE +
Sbjct: 70 HKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 46/70 (65%), Positives = 54/70 (77%)
Query: 19 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 75
FEEE ++ G RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 76 QKAMEMGRTG 85
KAM +GR G
Sbjct: 70 HKAMSIGRQG 79
>ZFIN|ZDB-GENE-030131-2873 [details] [associations]
symbol:taf13 "TAF13 RNA polymerase II, TATA box
binding protein (TBP)-associated factor" species:7955 "Danio rerio"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR003195 InterPro:IPR009072 Pfam:PF02269
ZFIN:ZDB-GENE-030131-2873 GO:GO:0006366 Gene3D:1.10.20.10
SUPFAM:SSF47113 PANTHER:PTHR11380 CTD:6884 eggNOG:COG5248
HOGENOM:HOG000237827 HOVERGEN:HBG055385 KO:K03127 OrthoDB:EOG4TQMBJ
EMBL:BC081504 IPI:IPI00512683 RefSeq:NP_001004665.1
UniGene:Dr.78526 ProteinModelPortal:Q66I70 SMR:Q66I70 STRING:Q66I70
GeneID:324153 KEGG:dre:324153 InParanoid:Q66I70 NextBio:20808622
Uniprot:Q66I70
Length = 124
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 81/113 (71%), Positives = 94/113 (83%)
Query: 107 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 163
F+E+ D SG RKR+FSKELRC+MYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FDEDLDDGGNGADSGQGRRKRLFSKELRCVMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 164 QKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
KAM +GR GRVQVEDIVFL+RKD RK+ARVKDLLTMNEEL+KARKAFDE +
Sbjct: 70 HKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELEKARKAFDEANY 122
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 45/70 (64%), Positives = 54/70 (77%)
Query: 19 FEEEEQDTPVNLPSG---RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 75
F+E+ D SG RKR+FSKELRC+MYGFGDD+NPYTESVDILED VI+F+ +MT
Sbjct: 10 FDEDLDDGGNGADSGQGRRKRLFSKELRCVMYGFGDDQNPYTESVDILEDLVIEFITEMT 69
Query: 76 QKAMEMGRTG 85
KAM +GR G
Sbjct: 70 HKAMSIGRQG 79
>DICTYBASE|DDB_G0292838 [details] [associations]
symbol:taf13 "TFIID subunit" species:44689
"Dictyostelium discoideum" [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISS]
[GO:0005669 "transcription factor TFIID complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR003195
InterPro:IPR009072 Pfam:PF02269 dictyBase:DDB_G0292838
GenomeReviews:CM000155_GR GO:GO:0006355 EMBL:AAFI02000197
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367 GO:GO:0005669
PANTHER:PTHR11380 eggNOG:COG5248 KO:K03127 OMA:KYARVKD
RefSeq:XP_629378.1 HSSP:Q15543 ProteinModelPortal:Q54CN8 SMR:Q54CN8
STRING:Q54CN8 EnsemblProtists:DDB0231002 GeneID:8628896
KEGG:ddi:DDB_G0292838 ProtClustDB:CLSZ2728705 Uniprot:Q54CN8
Length = 106
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 59/93 (63%), Positives = 74/93 (79%)
Query: 122 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTGRVQVEDI 180
RKRMFSKEL+ MMYGFGD R P ES+D+LE+ V +F+ +MT KA ++ + G+ Q ED+
Sbjct: 5 RKRMFSKELKHMMYGFGDVREPLHESIDLLEELVFEFIQEMTLKAAQVSNKRGKFQTEDL 64
Query: 181 VFLVRKDNRKYARVKDLLTMNEELKKARKAFDE 213
VFLVRKD +KY RV +LL MNEELKKA+KAFDE
Sbjct: 65 VFLVRKDPKKYYRVIELLRMNEELKKAKKAFDE 97
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 29/48 (60%), Positives = 38/48 (79%)
Query: 34 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM 81
RKRMFSKEL+ MMYGFGD R P ES+D+LE+ V +F+ +MT KA ++
Sbjct: 5 RKRMFSKELKHMMYGFGDVREPLHESIDLLEELVFEFIQEMTLKAAQV 52
>WB|WBGene00006397 [details] [associations]
symbol:taf-13 species:6239 "Caenorhabditis elegans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003195 InterPro:IPR009072 Pfam:PF02269
GO:GO:0006366 Gene3D:1.10.20.10 SUPFAM:SSF47113 EMBL:Z49909
PANTHER:PTHR11380 eggNOG:COG5248 GeneTree:ENSGT00390000012981
HOGENOM:HOG000237827 KO:K03127 OMA:KYARVKD HSSP:Q15543 PIR:T19252
RefSeq:NP_496289.2 ProteinModelPortal:Q17957 SMR:Q17957
STRING:Q17957 PaxDb:Q17957 EnsemblMetazoa:C14A4.10.1
EnsemblMetazoa:C14A4.10.2 GeneID:192052 KEGG:cel:CELE_C14A4.10
UCSC:C14A4.10 CTD:192052 WormBase:C14A4.10 InParanoid:Q17957
NextBio:951386 Uniprot:Q17957
Length = 121
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 48/107 (44%), Positives = 84/107 (78%)
Query: 109 EEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAME 168
E++++ VN P +K + ++LR M+YGFGDD+ PY +++D LE V++++ ++ Q AM+
Sbjct: 13 EDDKEKVVN-PEDKKHVLRRDLRSMVYGFGDDKEPYDKTLDTLEAIVLNYIKELCQLAMK 71
Query: 169 MGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVK 215
+G+ ++ +EDI +L+R+D +K++RVKDLL+M+EELKKARK F+++K
Sbjct: 72 VGKPDKMALEDIHYLIRRDPKKFSRVKDLLSMSEELKKARKQFEDMK 118
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 24/63 (38%), Positives = 46/63 (73%)
Query: 21 EEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAME 80
E++++ VN P +K + ++LR M+YGFGDD+ PY +++D LE V++++ ++ Q AM+
Sbjct: 13 EDDKEKVVN-PEDKKHVLRRDLRSMVYGFGDDKEPYDKTLDTLEAIVLNYIKELCQLAMK 71
Query: 81 MGR 83
+G+
Sbjct: 72 VGK 74
>TAIR|locus:2196040 [details] [associations]
symbol:TAF13 "TBP-associated factor 13" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005667 "transcription
factor complex" evidence=ISS] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA;RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
InterPro:IPR003195 InterPro:IPR009072 Pfam:PF02269 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006366 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0003743 PANTHER:PTHR11380 eggNOG:COG5248
HOGENOM:HOG000237827 KO:K03127 OMA:KYARVKD EMBL:BT010482
EMBL:AY463615 EMBL:AK175906 EMBL:AK175966 EMBL:AK176854
EMBL:AK221393 EMBL:AB493426 IPI:IPI00546383 RefSeq:NP_171768.2
UniGene:At.42586 ProteinModelPortal:Q6NQH4 SMR:Q6NQH4 IntAct:Q6NQH4
STRING:Q6NQH4 PRIDE:Q6NQH4 EnsemblPlants:AT1G02680.1 GeneID:837962
KEGG:ath:AT1G02680 TAIR:At1g02680 InParanoid:Q6NQH4
PhylomeDB:Q6NQH4 ProtClustDB:CLSN2680676 ArrayExpress:Q6NQH4
Genevestigator:Q6NQH4 Uniprot:Q6NQH4
Length = 126
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 50/92 (54%), Positives = 71/92 (77%)
Query: 122 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTGRVQVEDI 180
RK +F KEL+ MMYGFGD++NP ESV ++ED V++++ D+T KA E+G + GR+ V+D
Sbjct: 27 RKTLFQKELQHMMYGFGDEQNPLPESVALVEDIVVEYVTDLTHKAQEIGSKRGRLLVDDF 86
Query: 181 VFLVRKDNRKYARVKDLLTMNEELKKARKAFD 212
++L+RKD K R ++LL M EELK+ARKAFD
Sbjct: 87 LYLIRKDLPKLNRCRELLAMQEELKQARKAFD 118
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 34 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG 82
RK +F KEL+ MMYGFGD++NP ESV ++ED V++++ D+T KA E+G
Sbjct: 27 RKTLFQKELQHMMYGFGDEQNPLPESVALVEDIVVEYVTDLTHKAQEIG 75
>POMBASE|SPCC1494.02c [details] [associations]
symbol:taf13 "transcription factor TFIID complex
subunit Taf13 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000785 "chromatin" evidence=NAS] [GO:0000991 "core RNA
polymerase II binding transcription factor activity" evidence=ISO]
[GO:0005669 "transcription factor TFIID complex" evidence=ISO]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR003195
InterPro:IPR009072 Pfam:PF02269 PomBase:SPCC1494.02c GO:GO:0006355
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0000785
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006367 GO:GO:0000991
GO:GO:0005669 PANTHER:PTHR11380 eggNOG:COG5248 HOGENOM:HOG000237827
KO:K03127 HSSP:Q15543 PIR:T41003 RefSeq:NP_588527.2 STRING:O60076
EnsemblFungi:SPCC1494.02c.1 GeneID:2538695 KEGG:spo:SPCC1494.02c
OMA:TELAPHI OrthoDB:EOG42Z80V NextBio:20799881 Uniprot:O60076
Length = 111
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 33/91 (36%), Positives = 61/91 (67%)
Query: 119 PSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM-GRTGRVQV 177
P+ R+ +F+K+L+ +MY FGDD NP +S+++LE+ V+D++ +M +A + G +V+V
Sbjct: 11 PTRRQHLFTKDLKSLMYAFGDDVNPAPDSINVLEEIVVDYINEMCLEAARIAGNRNKVKV 70
Query: 178 EDIVFLVRKDNRKYARVKDLLTMNEELKKAR 208
+D F +R D +K RV++LL + + + R
Sbjct: 71 DDFKFALRDDPKKLGRVEELLVLQKMIADTR 101
Score = 125 (49.1 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 20/48 (41%), Positives = 37/48 (77%)
Query: 31 PSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKA 78
P+ R+ +F+K+L+ +MY FGDD NP +S+++LE+ V+D++ +M +A
Sbjct: 11 PTRRQHLFTKDLKSLMYAFGDDVNPAPDSINVLEEIVVDYINEMCLEA 58
>ASPGD|ASPL0000052310 [details] [associations]
symbol:AN1353 species:162425 "Emericella nidulans"
[GO:0005669 "transcription factor TFIID complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051123 "RNA polymerase
II transcriptional preinitiation complex assembly" evidence=IEA]
InterPro:IPR003195 InterPro:IPR009072 Pfam:PF02269 EMBL:BN001308
GO:GO:0006366 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0003743
PANTHER:PTHR11380 EnsemblFungi:CADANIAT00001259 OMA:DATEDTS
Uniprot:C8VRX7
Length = 176
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 37/108 (34%), Positives = 59/108 (54%)
Query: 116 VNLPSGRKRMFSKELRCMMYGFGDDR-------NPYTESVDILEDAVIDFLVDMTQKAME 168
+N PS F LR ++ +GD P E+V +L++ V DF+++M A +
Sbjct: 15 MNFPS-ECWFFLSSLRLLLLAYGDPAPHPSFPSEPLPETVRVLDEIVTDFVLEMCHGAAQ 73
Query: 169 ---MGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDE 213
R +++V+D F +R+D K RV++LL M ELK+ARK FD+
Sbjct: 74 HANYSRRQKIKVDDFRFALRRDPNKLGRVQELLRMERELKEARKQFDQ 121
>CGD|CAL0002660 [details] [associations]
symbol:TAF19 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005669
"transcription factor TFIID complex" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] InterPro:IPR003195 InterPro:IPR009072 Pfam:PF02269
CGD:CAL0002660 GO:GO:0006366 Gene3D:1.10.20.10 SUPFAM:SSF47113
GO:GO:0035690 EMBL:AACQ01000061 EMBL:AACQ01000060 PANTHER:PTHR11380
eggNOG:COG5248 KO:K03127 RefSeq:XP_716929.1 RefSeq:XP_716996.1
RefSeq:XP_888896.1 ProteinModelPortal:Q5A5A6 STRING:Q5A5A6
GeneID:3641396 GeneID:3641446 GeneID:3703890 KEGG:cal:CaO19.12641
KEGG:cal:CaO19.5174 KEGG:cal:CaO19_5174 Uniprot:Q5A5A6
Length = 166
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 34/100 (34%), Positives = 61/100 (61%)
Query: 122 RKRMFSKELRCMMYGFGDDRNPYTES-VDILEDAVIDFL----VDMTQKAMEMGRTGRVQ 176
R+R+F+K++ ++Y GD R TE+ V+ LED +++++ M A RT RV+
Sbjct: 21 RQRLFAKDIENLLYAMGD-RPVSTEATVNALEDVLVEYISQISYSMVNFAKSQNRT-RVK 78
Query: 177 VEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
+ D+ F +R D K AR + +L + +++KA+K FD+ K+
Sbjct: 79 LNDLAFTLRNDPMKLARFRYILEQSYKIEKAKKMFDDDKY 118
>UNIPROTKB|Q5A5A6 [details] [associations]
symbol:TAF13 "Putative uncharacterized protein TAF13"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR003195
InterPro:IPR009072 Pfam:PF02269 CGD:CAL0002660 GO:GO:0006366
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0035690 EMBL:AACQ01000061
EMBL:AACQ01000060 PANTHER:PTHR11380 eggNOG:COG5248 KO:K03127
RefSeq:XP_716929.1 RefSeq:XP_716996.1 RefSeq:XP_888896.1
ProteinModelPortal:Q5A5A6 STRING:Q5A5A6 GeneID:3641396
GeneID:3641446 GeneID:3703890 KEGG:cal:CaO19.12641
KEGG:cal:CaO19.5174 KEGG:cal:CaO19_5174 Uniprot:Q5A5A6
Length = 166
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 34/100 (34%), Positives = 61/100 (61%)
Query: 122 RKRMFSKELRCMMYGFGDDRNPYTES-VDILEDAVIDFL----VDMTQKAMEMGRTGRVQ 176
R+R+F+K++ ++Y GD R TE+ V+ LED +++++ M A RT RV+
Sbjct: 21 RQRLFAKDIENLLYAMGD-RPVSTEATVNALEDVLVEYISQISYSMVNFAKSQNRT-RVK 78
Query: 177 VEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
+ D+ F +R D K AR + +L + +++KA+K FD+ K+
Sbjct: 79 LNDLAFTLRNDPMKLARFRYILEQSYKIEKAKKMFDDDKY 118
>SGD|S000004564 [details] [associations]
symbol:TAF13 "TFIID subunit (19 kDa)" species:4932
"Saccharomyces cerevisiae" [GO:0001075 "RNA polymerase II core
promoter sequence-specific DNA binding transcription factor
activity involved in preinitiation complex assembly" evidence=IC]
[GO:0005669 "transcription factor TFIID complex" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0051123
"RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IDA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] InterPro:IPR003195 InterPro:IPR009072
Pfam:PF02269 SGD:S000004564 GO:GO:0006355 EMBL:BK006946
Gene3D:1.10.20.10 SUPFAM:SSF47113 EMBL:Z46660 GO:GO:0005669
GO:GO:0051123 PANTHER:PTHR11380 eggNOG:COG5248
GeneTree:ENSGT00390000012981 KO:K03127 OrthoDB:EOG42Z80V
EMBL:M17512 EMBL:AY557763 PIR:S49628 RefSeq:NP_013611.1
ProteinModelPortal:P11747 SMR:P11747 DIP:DIP-2054N IntAct:P11747
MINT:MINT-490157 STRING:P11747 PaxDb:P11747 EnsemblFungi:YML098W
GeneID:854875 KEGG:sce:YML098W CYGD:YML098w HOGENOM:HOG000141912
OMA:DICANAY NextBio:977813 Genevestigator:P11747 GermOnline:YML098W
Uniprot:P11747
Length = 167
Score = 136 (52.9 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 27/95 (28%), Positives = 54/95 (56%)
Query: 122 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTG---RVQVE 178
+ +F+K++ ++Y +GD P +V L++ V +LVD+ A + ++++E
Sbjct: 7 KTNLFNKDVSSLLYAYGDVPQPLQATVQCLDELVSGYLVDVCTNAFHTAQNSQRNKLRLE 66
Query: 179 DIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDE 213
D F +RKD K R ++L+ N+ + +A+K F+E
Sbjct: 67 DFKFALRKDPIKLGRAEELIATNKLITEAKKQFNE 101
>UNIPROTKB|O75486 [details] [associations]
symbol:SUPT3H "Transcription initiation protein SPT3
homolog" species:9606 "Homo sapiens" [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0033276
"transcription factor TFTC complex" evidence=IDA] [GO:0016578
"histone deubiquitination" evidence=IDA] [GO:0030914 "STAGA
complex" evidence=IDA] [GO:0043966 "histone H3 acetylation"
evidence=IDA] [GO:0004402 "histone acetyltransferase activity"
evidence=IDA] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR003195 InterPro:IPR009072 Pfam:PF02269
EMBL:AF064804 GO:GO:0045893 EMBL:CH471081 GO:GO:0006352
GO:GO:0006357 GO:GO:0003713 GO:GO:0006366 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0016578 GO:GO:0043966 GO:GO:0030914
GO:GO:0033276 EMBL:AL096865 eggNOG:NOG290232 KO:K11313
PANTHER:PTHR11380 EMBL:AF069734 EMBL:AF073930 EMBL:AK313874
EMBL:AL138880 EMBL:AL161905 EMBL:AL360272 EMBL:AL499610
EMBL:BC050384 IPI:IPI00025792 IPI:IPI00303875 IPI:IPI00384341
RefSeq:NP_003590.1 RefSeq:NP_852001.1 UniGene:Hs.368325
ProteinModelPortal:O75486 SMR:O75486 DIP:DIP-28148N IntAct:O75486
STRING:O75486 PhosphoSite:O75486 PRIDE:O75486 DNASU:8464
Ensembl:ENST00000306867 Ensembl:ENST00000371459
Ensembl:ENST00000371460 Ensembl:ENST00000371461
Ensembl:ENST00000475057 GeneID:8464 KEGG:hsa:8464 UCSC:uc003oxn.1
UCSC:uc003oxo.3 CTD:8464 GeneCards:GC06M044843 HGNC:HGNC:11466
HPA:HPA024371 MIM:602947 neXtProt:NX_O75486 PharmGKB:PA36252
HOGENOM:HOG000294119 HOVERGEN:HBG058560 OMA:DVKQERM GenomeRNAi:8464
NextBio:31680 ArrayExpress:O75486 Bgee:O75486 CleanEx:HS_SUPT3H
Genevestigator:O75486 GermOnline:ENSG00000196284 Uniprot:O75486
Length = 399
Score = 147 (56.8 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 35/97 (36%), Positives = 55/97 (56%)
Query: 120 SGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG--RTGRVQV 177
+G+ F+ EL+ MMY GD R P E+ ++ED V L+++ Q+A E+ R RV
Sbjct: 102 TGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGARVIT 161
Query: 178 -EDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDE 213
ED++FL+RKD +K R+ + + + K K DE
Sbjct: 162 PEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 198
>UNIPROTKB|F1N9T6 [details] [associations]
symbol:SUPT3H "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0004402 "histone acetyltransferase
activity" evidence=IEA] [GO:0016578 "histone deubiquitination"
evidence=IEA] [GO:0030914 "STAGA complex" evidence=IEA] [GO:0033276
"transcription factor TFTC complex" evidence=IEA] [GO:0043966
"histone H3 acetylation" evidence=IEA] InterPro:IPR003195
InterPro:IPR009072 Pfam:PF02269 GO:GO:0003713 GO:GO:0006366
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0016578 GO:GO:0043966
GO:GO:0004402 GO:GO:0030914 GO:GO:0033276 PANTHER:PTHR11380
GeneTree:ENSGT00390000010738 OMA:DVKQERM EMBL:AADN02018236
EMBL:AADN02018237 EMBL:AADN02018238 EMBL:AADN02018239
IPI:IPI00574955 Ensembl:ENSGALT00000036693 ArrayExpress:F1N9T6
Uniprot:F1N9T6
Length = 367
Score = 144 (55.7 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 34/96 (35%), Positives = 53/96 (55%)
Query: 121 GRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG--RTGRV-QV 177
G+ F+ EL+ MM+ GD R P ES ++ED V L+++ Q+A E+ R RV
Sbjct: 22 GKSTSFTPELQSMMFSLGDARRPLHESAILVEDIVHTQLINLLQQAAEVSQLRGARVISA 81
Query: 178 EDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDE 213
ED++FL+RKD +K R+ + + K K +E
Sbjct: 82 EDLLFLMRKDKKKLRRLLKYMFFRDYKSKIVKGIEE 117
>ZFIN|ZDB-GENE-040718-370 [details] [associations]
symbol:supt3h "suppressor of Ty 3 homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR003195
InterPro:IPR009072 Pfam:PF02269 ZFIN:ZDB-GENE-040718-370
GO:GO:0006366 Gene3D:1.10.20.10 SUPFAM:SSF47113 eggNOG:NOG290232
KO:K11313 PANTHER:PTHR11380 CTD:8464 HOGENOM:HOG000294119
HOVERGEN:HBG058560 EMBL:BC075959 IPI:IPI00505611
RefSeq:NP_001002625.1 UniGene:Dr.108054 ProteinModelPortal:Q6DHL1
STRING:Q6DHL1 PRIDE:Q6DHL1 GeneID:436898 KEGG:dre:436898
InParanoid:Q6DHL1 OrthoDB:EOG4SXND9 NextBio:20831325 Bgee:Q6DHL1
Uniprot:Q6DHL1
Length = 371
Score = 140 (54.3 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 33/97 (34%), Positives = 52/97 (53%)
Query: 120 SGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG--RTGRV-Q 176
SG+ F EL+ MM+ GD R P E+ ++ED V L+++ +A E+ R RV
Sbjct: 18 SGKATSFIPELQSMMFALGDSRRPLHETAALVEDIVHTQLINLLHQAAEVALLRGARVIS 77
Query: 177 VEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDE 213
E+I+FL+RKD +K R+ + + K K D+
Sbjct: 78 PEEIIFLMRKDKKKIRRLFKYMQFRDYKSKVLKTIDD 114
>POMBASE|SPCC61.02 [details] [associations]
symbol:spt3 "SAGA complex subunit Spt3" species:4896
"Schizosaccharomyces pombe" [GO:0000124 "SAGA complex"
evidence=IDA] [GO:0000785 "chromatin" evidence=NAS] [GO:0003712
"transcription cofactor activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IC] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=EXP;ISO] [GO:0016573 "histone acetylation" evidence=ISO]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR003195 InterPro:IPR009072 Pfam:PF02269
PomBase:SPCC61.02 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0000785 GO:GO:0016573
GO:GO:0006357 GO:GO:0006338 GO:GO:0006366 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0000124 GO:GO:0003712 EMBL:AF005931
PIR:T41462 RefSeq:NP_588193.1 ProteinModelPortal:O14311
STRING:O14311 EnsemblFungi:SPCC61.02.1 GeneID:2539570
KEGG:spo:SPCC61.02 eggNOG:NOG290232 HOGENOM:HOG000205281 KO:K11313
OMA:EIQQMMF OrthoDB:EOG4R53BT NextBio:20800729 PANTHER:PTHR11380
Uniprot:O14311
Length = 307
Score = 123 (48.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/93 (31%), Positives = 54/93 (58%)
Query: 120 SGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTGR--VQ 176
+GR + E++ MM+ G+ ++P E+ ++E+ + +++M +A E+ R G +
Sbjct: 4 TGRTSKYRVEIQQMMFILGEVQDPLPETTQLVEELIRGQVMEMLIQANELALRRGSRSIT 63
Query: 177 VEDIVFLVRKDNRKYARVKDLLTMNEELKKARK 209
VED+ FL+R D K R+K L+ E KKA++
Sbjct: 64 VEDLFFLIRHDRAKVNRLKTYLSWKEVRKKAKE 96
>ASPGD|ASPL0000059685 [details] [associations]
symbol:sptC species:162425 "Emericella nidulans"
[GO:0001403 "invasive growth in response to glucose limitation"
evidence=IEA] [GO:0007124 "pseudohyphal growth" evidence=IEA]
[GO:0016573 "histone acetylation" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] [GO:0000124 "SAGA complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0046695 "SLIK
(SAGA-like) complex" evidence=IEA] InterPro:IPR003195
InterPro:IPR009072 Pfam:PF02269 EMBL:BN001308 GO:GO:0006366
Gene3D:1.10.20.10 SUPFAM:SSF47113 EMBL:AACD01000011
eggNOG:NOG290232 HOGENOM:HOG000205281 KO:K11313 OMA:EIQQMMF
OrthoDB:EOG4R53BT PANTHER:PTHR11380 RefSeq:XP_658323.1
ProteinModelPortal:Q5BFG1 STRING:Q5BFG1
EnsemblFungi:CADANIAT00001949 GeneID:2876492 KEGG:ani:AN0719.2
Uniprot:Q5BFG1
Length = 331
Score = 113 (44.8 bits), Expect = 0.00027, P = 0.00027
Identities = 25/99 (25%), Positives = 53/99 (53%)
Query: 118 LPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG-RTG--R 174
+ S R + +E++ MM+ G+ P E+ ++ED V +V++ ++ + R G
Sbjct: 1 MSSDRTPKYRQEIQQMMFVSGETAEPSIETTTLIEDIVRQQVVELLARSTALATRRGVRS 60
Query: 175 VQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDE 213
+ +D++FL+R D K +R+K L+ + K + + D+
Sbjct: 61 ISTDDLIFLIRHDKAKVSRLKTFLSWKDVRKNVKDSDDK 99
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 220 220 0.00094 112 3 11 22 0.36 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 516 (55 KB)
Total size of DFA: 138 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.46u 0.08s 20.54t Elapsed: 00:00:03
Total cpu time: 20.46u 0.08s 20.54t Elapsed: 00:00:03
Start: Thu Aug 15 15:15:33 2013 End: Thu Aug 15 15:15:36 2013