RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7662
         (220 letters)



>d1bh9a_ a.22.1.3 (A:) TAF(II)18 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 45

 Score = 70.8 bits (174), Expect = 2e-17
 Identities = 35/45 (77%), Positives = 41/45 (91%)

Query: 37 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM 81
          +FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +
Sbjct: 1  LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45



 Score = 70.8 bits (174), Expect = 2e-17
 Identities = 35/45 (77%), Positives = 41/45 (91%)

Query: 125 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM 169
           +FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +
Sbjct: 1   LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45


>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase
           {Shewanella massilia [TaxId: 76854]}
          Length = 627

 Score = 29.2 bits (64), Expect = 0.36
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 48  GFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTFLSLLK---FKSNKNVCVFS 104
           G   +   YT ++  +E   ++ L +  + A       P F +  K              
Sbjct: 528 GKEKE---YTRNMGEMEW--LETLYNECKAANAGKFEMPDFATFWKQGYVHFGDGEVWTR 582

Query: 105 FQ-FEEEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNP 143
              F  + +  P+  PSG   +FS+++      FG D   
Sbjct: 583 HADFRNDPEINPLGTPSGLIEIFSRKID----QFGYDDCK 618


>d1wfxa_ d.166.1.5 (A:) Probable RNA 2'-phosphotransferase KptA
           {Aeropyrum pernix [TaxId: 56636]}
          Length = 180

 Score = 26.3 bits (58), Expect = 2.1
 Identities = 8/47 (17%), Positives = 18/47 (38%)

Query: 167 MEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDE 213
           + + R G  +V ++V  +RK    +     ++ +     K R     
Sbjct: 20  VRLTREGWARVSEVVEGLRKAGWSWVEEWHIVGVALHDPKGRYELRN 66


>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO
           reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 622

 Score = 26.2 bits (56), Expect = 4.0
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 48  GFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTFLSL-----LKFKSNKNVCV 102
           G G +   +TE  D     +  F     ++A       P+F        ++F   +    
Sbjct: 520 GKGAE---FTEGRDE-MGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANF 575

Query: 103 FSFQ-FEEEEQDTPVNLPSGRKRMFSKEL 130
             +  F E+    P+  PSG   ++SK +
Sbjct: 576 VRYADFREDPLFNPLGTPSGLIEIYSKNI 604


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 838,378
Number of extensions: 39717
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 11
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)