Query psy7665
Match_columns 296
No_of_seqs 361 out of 2865
Neff 9.5
Searched_HMMs 46136
Date Sat Aug 17 00:17:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4716|consensus 100.0 3.2E-28 6.9E-33 205.9 14.0 179 113-291 17-204 (503)
2 COG1249 Lpd Pyruvate/2-oxoglut 99.9 9.3E-26 2E-30 205.5 20.8 173 114-294 3-182 (454)
3 TIGR01438 TGR thioredoxin and 99.9 2.1E-24 4.6E-29 200.7 20.7 180 115-294 2-189 (484)
4 PTZ00058 glutathione reductase 99.9 2.9E-24 6.2E-29 201.8 18.7 172 112-294 45-246 (561)
5 PLN02546 glutathione reductase 99.9 3.4E-24 7.5E-29 201.3 19.0 177 113-294 77-261 (558)
6 TIGR01424 gluta_reduc_2 glutat 99.9 1.5E-23 3.2E-28 193.9 20.2 168 115-294 2-175 (446)
7 TIGR01421 gluta_reduc_1 glutat 99.9 2.2E-23 4.7E-28 192.7 19.7 168 115-294 2-175 (450)
8 KOG0405|consensus 99.9 6.6E-24 1.4E-28 180.4 14.4 171 114-293 19-197 (478)
9 PRK06467 dihydrolipoamide dehy 99.9 3.7E-23 8E-28 192.2 20.7 173 114-294 3-183 (471)
10 TIGR01423 trypano_reduc trypan 99.9 2.3E-23 4.9E-28 193.6 19.2 180 114-294 2-196 (486)
11 PTZ00052 thioredoxin reductase 99.9 3.5E-23 7.5E-28 193.5 20.3 180 115-294 5-191 (499)
12 PRK06370 mercuric reductase; V 99.9 4.3E-23 9.4E-28 191.7 20.3 170 114-294 4-180 (463)
13 PRK06116 glutathione reductase 99.9 7E-23 1.5E-27 189.8 19.6 168 115-294 4-176 (450)
14 PLN02507 glutathione reductase 99.9 9.4E-23 2E-27 190.4 19.7 181 113-294 23-212 (499)
15 TIGR02053 MerA mercuric reduct 99.9 4.2E-22 9.1E-27 185.2 20.2 169 116-294 1-175 (463)
16 PRK14727 putative mercuric red 99.9 6.5E-22 1.4E-26 184.4 20.4 173 114-294 15-197 (479)
17 PRK07846 mycothione reductase; 99.9 3.1E-22 6.7E-27 185.0 18.0 167 115-294 1-175 (451)
18 PRK05976 dihydrolipoamide dehy 99.9 1.3E-21 2.7E-26 182.3 21.2 172 114-294 3-189 (472)
19 PRK14694 putative mercuric red 99.9 8.5E-22 1.8E-26 183.2 20.0 173 113-294 4-187 (468)
20 KOG1335|consensus 99.9 6.8E-22 1.5E-26 170.1 17.3 172 114-293 38-219 (506)
21 PTZ00153 lipoamide dehydrogena 99.9 1.3E-21 2.8E-26 186.4 20.6 172 114-294 115-321 (659)
22 PRK06115 dihydrolipoamide dehy 99.9 2.3E-21 5.1E-26 180.0 20.8 170 115-294 3-183 (466)
23 PRK13748 putative mercuric red 99.9 1.6E-21 3.4E-26 185.5 19.8 172 114-294 97-279 (561)
24 PRK06912 acoL dihydrolipoamide 99.9 2.4E-21 5.2E-26 179.7 19.9 169 117-294 2-179 (458)
25 PRK05249 soluble pyridine nucl 99.9 4.5E-21 9.8E-26 178.3 20.3 173 114-294 4-184 (461)
26 PRK06416 dihydrolipoamide dehy 99.9 8.3E-21 1.8E-25 176.5 20.5 170 114-294 3-181 (462)
27 TIGR01350 lipoamide_DH dihydro 99.9 1.3E-20 2.9E-25 175.1 20.4 170 116-294 2-179 (461)
28 PRK06292 dihydrolipoamide dehy 99.9 9.7E-21 2.1E-25 176.0 19.0 168 114-294 2-178 (460)
29 PRK06327 dihydrolipoamide dehy 99.9 2.8E-20 6E-25 173.3 21.2 179 114-294 3-192 (475)
30 TIGR03452 mycothione_red mycot 99.9 1.2E-20 2.6E-25 174.6 17.5 167 115-294 2-178 (452)
31 PRK07251 pyridine nucleotide-d 99.9 2.5E-20 5.4E-25 172.1 18.9 157 115-294 3-166 (438)
32 PRK07845 flavoprotein disulfid 99.9 4.1E-20 8.9E-25 171.7 20.3 169 117-294 3-186 (466)
33 PRK07818 dihydrolipoamide dehy 99.9 6.4E-20 1.4E-24 170.6 20.3 169 115-294 4-181 (466)
34 PRK08010 pyridine nucleotide-d 99.8 5.5E-19 1.2E-23 163.3 19.5 157 115-294 3-167 (441)
35 PLN02172 flavin-containing mon 99.6 1.2E-14 2.6E-19 134.3 16.7 143 115-276 10-188 (461)
36 COG2081 Predicted flavoprotein 99.6 2.5E-14 5.4E-19 125.4 15.4 144 114-263 2-167 (408)
37 COG2072 TrkA Predicted flavopr 99.6 4.6E-15 9.9E-20 136.6 9.4 162 114-295 7-185 (443)
38 PRK10262 thioredoxin reductase 99.6 7.4E-14 1.6E-18 123.9 14.9 141 114-294 5-155 (321)
39 KOG1399|consensus 99.6 3.3E-14 7.1E-19 129.6 12.1 147 115-274 6-168 (448)
40 PF13738 Pyr_redox_3: Pyridine 99.5 3.7E-14 8E-19 117.3 9.5 150 119-294 1-176 (203)
41 COG0492 TrxB Thioredoxin reduc 99.5 3.5E-13 7.5E-18 117.6 14.8 140 114-294 2-152 (305)
42 PF00743 FMO-like: Flavin-bind 99.5 3.3E-14 7.1E-19 133.2 8.7 148 116-274 2-165 (531)
43 TIGR03143 AhpF_homolog putativ 99.5 3.1E-13 6.7E-18 128.2 15.0 138 115-294 4-152 (555)
44 TIGR01292 TRX_reduct thioredox 99.5 6.2E-13 1.3E-17 116.5 15.6 118 116-274 1-123 (300)
45 PRK15317 alkyl hydroperoxide r 99.5 6.7E-13 1.5E-17 125.1 15.5 138 114-294 210-360 (517)
46 PF03486 HI0933_like: HI0933-l 99.5 4.8E-14 1E-18 128.0 6.3 142 116-263 1-166 (409)
47 PRK12778 putative bifunctional 99.4 6.3E-13 1.4E-17 130.5 11.6 163 42-272 375-539 (752)
48 TIGR03140 AhpF alkyl hydropero 99.4 3.4E-12 7.4E-17 120.2 15.5 138 114-294 211-361 (515)
49 PRK12831 putative oxidoreducta 99.4 1E-12 2.2E-17 122.0 10.8 134 113-294 138-290 (464)
50 PRK12779 putative bifunctional 99.4 1.4E-12 3E-17 129.7 10.4 109 114-272 305-414 (944)
51 PRK09853 putative selenate red 99.3 1.1E-11 2.3E-16 122.3 12.1 129 114-294 538-677 (1019)
52 PF02852 Pyr_redox_dim: Pyridi 99.3 7.3E-12 1.6E-16 93.3 7.7 60 2-61 50-109 (110)
53 TIGR01316 gltA glutamate synth 99.3 1.2E-11 2.5E-16 114.7 10.6 108 114-272 132-240 (449)
54 TIGR03315 Se_ygfK putative sel 99.3 1.8E-11 3.9E-16 121.1 11.6 129 114-294 536-675 (1012)
55 PF07992 Pyr_redox_2: Pyridine 99.3 1.3E-11 2.9E-16 101.7 8.3 118 117-271 1-130 (201)
56 PRK12775 putative trifunctiona 99.3 2.3E-11 5E-16 122.0 10.1 110 114-272 429-539 (1006)
57 COG3634 AhpF Alkyl hydroperoxi 99.2 4.1E-11 8.8E-16 103.0 9.2 145 114-294 210-363 (520)
58 PRK04176 ribulose-1,5-biphosph 99.2 9.5E-11 2.1E-15 100.4 11.0 134 114-264 24-174 (257)
59 COG0644 FixC Dehydrogenases (f 99.2 2.2E-11 4.9E-16 111.1 7.0 144 114-266 2-155 (396)
60 PLN02852 ferredoxin-NADP+ redu 99.2 1.2E-10 2.5E-15 108.0 11.6 109 114-272 25-136 (491)
61 PRK11749 dihydropyrimidine deh 99.2 1.7E-10 3.8E-15 107.2 12.6 130 114-294 139-282 (457)
62 TIGR01372 soxA sarcosine oxida 99.2 4.5E-10 9.8E-15 113.2 16.3 137 114-294 162-326 (985)
63 TIGR02028 ChlP geranylgeranyl 99.2 7.6E-11 1.6E-15 107.7 9.7 141 116-267 1-164 (398)
64 TIGR03169 Nterm_to_SelD pyridi 99.2 1.1E-10 2.3E-15 105.5 9.1 112 117-274 1-118 (364)
65 PRK10157 putative oxidoreducta 99.2 8.9E-11 1.9E-15 108.2 8.5 47 114-162 4-50 (428)
66 PRK10015 oxidoreductase; Provi 99.2 8.7E-11 1.9E-15 108.2 8.1 47 114-162 4-50 (429)
67 PRK12810 gltD glutamate syntha 99.1 2.8E-10 6.2E-15 106.1 11.3 108 114-272 142-250 (471)
68 PRK09564 coenzyme A disulfide 99.1 2.3E-10 4.9E-15 106.1 10.3 135 117-294 2-158 (444)
69 PRK05192 tRNA uridine 5-carbox 99.1 3.8E-10 8.3E-15 106.2 11.7 32 114-145 3-34 (618)
70 TIGR00292 thiazole biosynthesi 99.1 3.4E-10 7.4E-15 96.7 10.3 35 114-150 20-54 (254)
71 TIGR02032 GG-red-SF geranylger 99.1 2.2E-10 4.7E-15 100.0 8.9 30 116-145 1-30 (295)
72 PTZ00318 NADH dehydrogenase-li 99.1 6.8E-10 1.5E-14 102.3 12.6 117 114-274 9-136 (424)
73 PF01134 GIDA: Glucose inhibit 99.1 3.2E-10 6.9E-15 101.4 9.9 29 117-145 1-29 (392)
74 PRK04965 NADH:flavorubredoxin 99.1 7.4E-10 1.6E-14 100.5 12.5 113 116-273 3-121 (377)
75 PRK06567 putative bifunctional 99.1 1.9E-10 4.2E-15 112.4 9.1 32 114-145 382-413 (1028)
76 PRK12814 putative NADPH-depend 99.1 4.2E-10 9.1E-15 108.8 11.2 130 114-294 192-332 (652)
77 KOG1335|consensus 99.1 1.7E-10 3.8E-15 100.3 7.5 63 2-64 435-497 (506)
78 COG1635 THI4 Ribulose 1,5-bisp 99.1 2.2E-10 4.8E-15 92.8 7.6 48 114-169 29-77 (262)
79 KOG0404|consensus 99.1 1E-09 2.2E-14 89.1 10.2 122 115-272 8-133 (322)
80 TIGR01317 GOGAT_sm_gam glutama 99.1 1.2E-09 2.6E-14 102.2 12.2 108 114-272 142-250 (485)
81 PRK09754 phenylpropionate diox 99.1 4.1E-10 8.9E-15 102.8 8.8 133 116-294 4-153 (396)
82 TIGR01790 carotene-cycl lycope 99.1 1.4E-09 3.1E-14 98.9 12.3 132 117-263 1-141 (388)
83 PRK12770 putative glutamate sy 99.1 7.4E-10 1.6E-14 99.6 10.1 114 114-273 17-141 (352)
84 PF01946 Thi4: Thi4 family; PD 99.1 2.1E-09 4.5E-14 87.5 11.6 35 114-150 16-50 (230)
85 PRK14989 nitrite reductase sub 99.1 8.7E-10 1.9E-14 108.9 11.3 132 117-294 5-154 (847)
86 PLN02463 lycopene beta cyclase 99.1 1.5E-09 3.3E-14 100.0 12.1 33 113-145 26-58 (447)
87 TIGR02374 nitri_red_nirB nitri 99.1 7.4E-10 1.6E-14 109.1 10.6 132 118-294 1-149 (785)
88 PLN00128 Succinate dehydrogena 99.0 3E-09 6.5E-14 102.2 13.7 148 114-261 49-248 (635)
89 PLN02546 glutathione reductase 99.0 2.9E-09 6.2E-14 100.8 12.9 168 42-266 175-353 (558)
90 PRK09078 sdhA succinate dehydr 99.0 3E-09 6.4E-14 101.9 13.1 33 114-146 11-43 (598)
91 TIGR02023 BchP-ChlP geranylger 99.0 1.6E-09 3.4E-14 98.8 10.8 31 116-146 1-31 (388)
92 COG1249 Lpd Pyruvate/2-oxoglut 99.0 4.8E-10 1E-14 102.9 7.1 60 2-61 394-453 (454)
93 PTZ00139 Succinate dehydrogena 99.0 4.2E-09 9.2E-14 101.1 13.9 148 114-261 28-227 (617)
94 PLN00093 geranylgeranyl diphos 99.0 2.3E-09 5E-14 99.2 11.5 34 113-146 37-70 (450)
95 PRK13984 putative oxidoreducta 99.0 1.2E-09 2.7E-14 105.0 9.6 130 114-294 282-427 (604)
96 PF12831 FAD_oxidored: FAD dep 99.0 6.4E-10 1.4E-14 102.5 7.2 138 117-260 1-147 (428)
97 PRK13512 coenzyme A disulfide 99.0 1.7E-09 3.6E-14 100.1 9.9 136 117-294 3-157 (438)
98 PRK08401 L-aspartate oxidase; 99.0 2.9E-09 6.4E-14 99.2 11.5 144 116-263 2-175 (466)
99 PRK08958 sdhA succinate dehydr 99.0 4.6E-09 1E-13 100.4 12.8 148 114-261 6-204 (588)
100 TIGR01318 gltD_gamma_fam gluta 99.0 1.9E-09 4.1E-14 100.4 9.7 108 114-272 140-248 (467)
101 COG1252 Ndh NADH dehydrogenase 99.0 2.4E-09 5.2E-14 96.2 9.6 115 116-275 4-123 (405)
102 PRK07573 sdhA succinate dehydr 99.0 1.2E-08 2.7E-13 98.3 15.0 32 114-145 34-65 (640)
103 PF00890 FAD_binding_2: FAD bi 99.0 3.1E-09 6.8E-14 97.7 10.5 32 117-150 1-32 (417)
104 PRK06452 sdhA succinate dehydr 99.0 7.1E-09 1.5E-13 98.8 13.0 33 114-146 4-36 (566)
105 TIGR00275 flavoprotein, HI0933 99.0 2.2E-09 4.8E-14 98.1 9.1 139 119-263 1-160 (400)
106 PF01494 FAD_binding_3: FAD bi 99.0 9.5E-10 2.1E-14 98.3 6.6 32 115-146 1-32 (356)
107 PRK08274 tricarballylate dehyd 99.0 7.2E-09 1.6E-13 96.7 12.3 33 114-146 3-35 (466)
108 PRK12845 3-ketosteroid-delta-1 99.0 1.5E-08 3.2E-13 96.3 14.5 50 113-171 14-66 (564)
109 COG0445 GidA Flavin-dependent 99.0 7.8E-10 1.7E-14 100.6 5.4 31 115-145 4-34 (621)
110 PLN02697 lycopene epsilon cycl 99.0 6.7E-09 1.5E-13 97.4 11.8 33 113-145 106-138 (529)
111 PRK12769 putative oxidoreducta 98.9 3E-09 6.6E-14 103.1 9.6 108 114-272 326-434 (654)
112 PRK06834 hypothetical protein; 98.9 9.1E-09 2E-13 96.4 12.4 32 115-146 3-34 (488)
113 PRK06069 sdhA succinate dehydr 98.9 1.2E-08 2.5E-13 97.7 12.5 33 114-146 4-39 (577)
114 TIGR01812 sdhA_frdA_Gneg succi 98.9 1.6E-08 3.4E-13 96.7 13.3 30 117-146 1-30 (566)
115 PRK07803 sdhA succinate dehydr 98.9 1.3E-08 2.9E-13 97.9 12.7 33 114-146 7-39 (626)
116 PF01266 DAO: FAD dependent ox 98.9 5.9E-08 1.3E-12 86.7 16.1 30 117-146 1-30 (358)
117 PRK06370 mercuric reductase; V 98.9 3.5E-09 7.6E-14 98.7 8.1 63 2-64 393-455 (463)
118 PRK14694 putative mercuric red 98.9 3.6E-09 7.8E-14 98.8 8.1 62 2-63 393-454 (468)
119 PRK06481 fumarate reductase fl 98.9 1.2E-08 2.6E-13 96.1 11.6 38 114-153 60-97 (506)
120 PRK05249 soluble pyridine nucl 98.9 3.8E-09 8.3E-14 98.4 8.1 62 2-63 393-454 (461)
121 PLN02507 glutathione reductase 98.9 4.2E-09 9E-14 98.9 8.4 67 2-68 423-489 (499)
122 PRK06847 hypothetical protein; 98.9 1.3E-08 2.8E-13 92.2 11.2 32 115-146 4-35 (375)
123 PRK07804 L-aspartate oxidase; 98.9 2.2E-08 4.7E-13 95.0 13.1 33 114-146 15-47 (541)
124 PRK12809 putative oxidoreducta 98.9 5.7E-09 1.2E-13 100.8 9.3 108 114-272 309-417 (639)
125 PRK14727 putative mercuric red 98.9 4.3E-09 9.2E-14 98.5 8.1 62 2-63 404-465 (479)
126 PRK06175 L-aspartate oxidase; 98.9 9.7E-09 2.1E-13 94.8 10.3 32 114-146 3-34 (433)
127 TIGR01421 gluta_reduc_1 glutat 98.9 3.4E-09 7.3E-14 98.4 7.2 58 2-59 390-447 (450)
128 PRK07818 dihydrolipoamide dehy 98.9 5.1E-09 1.1E-13 97.7 8.4 63 2-64 396-458 (466)
129 PF05834 Lycopene_cycl: Lycope 98.9 8E-09 1.7E-13 93.6 9.4 143 117-275 1-154 (374)
130 PRK07057 sdhA succinate dehydr 98.9 2.7E-08 5.9E-13 95.2 13.3 34 113-146 10-43 (591)
131 PRK08773 2-octaprenyl-3-methyl 98.9 1.2E-08 2.7E-13 93.0 10.4 33 114-146 5-37 (392)
132 PRK07251 pyridine nucleotide-d 98.9 4.9E-09 1.1E-13 97.0 7.8 60 2-61 376-435 (438)
133 PRK04965 NADH:flavorubredoxin 98.9 8.1E-09 1.8E-13 93.7 9.1 134 75-265 97-241 (377)
134 PRK07121 hypothetical protein; 98.9 5.1E-08 1.1E-12 91.6 14.7 35 114-150 19-53 (492)
135 PRK09231 fumarate reductase fl 98.9 2.1E-08 4.6E-13 95.8 12.3 33 114-146 3-37 (582)
136 PRK08244 hypothetical protein; 98.9 1.6E-08 3.5E-13 95.1 11.3 32 115-146 2-33 (493)
137 PRK06115 dihydrolipoamide dehy 98.9 5.6E-09 1.2E-13 97.4 8.1 62 2-63 396-457 (466)
138 PRK07845 flavoprotein disulfid 98.9 5.8E-09 1.3E-13 97.3 8.2 62 2-63 396-457 (466)
139 TIGR01423 trypano_reduc trypan 98.9 4.3E-09 9.4E-14 98.3 7.3 60 3-62 412-471 (486)
140 PTZ00153 lipoamide dehydrogena 98.9 5.2E-09 1.1E-13 100.5 8.0 62 2-63 590-651 (659)
141 PRK06912 acoL dihydrolipoamide 98.9 6E-09 1.3E-13 97.0 8.1 61 3-63 389-449 (458)
142 TIGR01424 gluta_reduc_2 glutat 98.9 4.6E-09 9.9E-14 97.5 7.3 59 2-60 386-444 (446)
143 PRK08641 sdhA succinate dehydr 98.9 3.5E-08 7.5E-13 94.5 13.4 31 116-146 4-34 (589)
144 PRK11728 hydroxyglutarate oxid 98.9 1.8E-07 3.8E-12 85.5 17.6 32 115-146 2-35 (393)
145 PRK06116 glutathione reductase 98.9 4.8E-09 1E-13 97.5 7.3 59 2-60 390-448 (450)
146 PRK08010 pyridine nucleotide-d 98.9 6.2E-09 1.3E-13 96.5 8.0 62 2-63 377-438 (441)
147 PRK08205 sdhA succinate dehydr 98.9 3.6E-08 7.8E-13 94.3 13.4 149 114-263 4-206 (583)
148 PRK08626 fumarate reductase fl 98.9 1.9E-08 4.2E-13 97.2 11.6 33 114-146 4-36 (657)
149 PLN02815 L-aspartate oxidase 98.9 2.8E-08 6.1E-13 94.8 12.5 33 113-146 27-59 (594)
150 COG0493 GltD NADPH-dependent g 98.9 4.8E-09 1E-13 96.4 7.0 108 114-272 122-230 (457)
151 PRK05945 sdhA succinate dehydr 98.9 1.7E-08 3.6E-13 96.5 11.0 32 115-146 3-36 (575)
152 PRK06327 dihydrolipoamide dehy 98.9 7.1E-09 1.5E-13 96.9 8.2 62 2-63 405-466 (475)
153 TIGR01176 fum_red_Fp fumarate 98.9 3.5E-08 7.6E-13 94.2 13.0 148 114-263 2-195 (580)
154 PRK06467 dihydrolipoamide dehy 98.9 7.1E-09 1.5E-13 96.8 8.2 62 2-63 395-456 (471)
155 PRK06854 adenylylsulfate reduc 98.9 3.2E-08 6.8E-13 95.1 12.7 33 114-146 10-44 (608)
156 PRK05976 dihydrolipoamide dehy 98.9 7.3E-09 1.6E-13 96.8 8.1 62 2-63 402-463 (472)
157 TIGR00136 gidA glucose-inhibit 98.8 2.2E-08 4.8E-13 94.3 11.0 30 116-145 1-30 (617)
158 PLN02661 Putative thiazole syn 98.8 3.7E-08 7.9E-13 87.0 11.7 36 113-150 90-126 (357)
159 PRK08275 putative oxidoreducta 98.8 3.8E-08 8.3E-13 93.7 12.6 148 114-263 8-200 (554)
160 TIGR00551 nadB L-aspartate oxi 98.8 3.7E-08 8E-13 92.4 12.2 146 115-263 2-189 (488)
161 TIGR01789 lycopene_cycl lycope 98.8 1.6E-08 3.5E-13 91.4 9.3 32 117-150 1-34 (370)
162 PRK06292 dihydrolipoamide dehy 98.8 9.8E-09 2.1E-13 95.7 8.1 62 2-63 390-451 (460)
163 PRK08243 4-hydroxybenzoate 3-m 98.8 2.1E-08 4.5E-13 91.5 10.1 32 115-146 2-33 (392)
164 TIGR03452 mycothione_red mycot 98.8 9.1E-09 2E-13 95.6 7.8 61 2-62 388-449 (452)
165 PRK06263 sdhA succinate dehydr 98.8 3.7E-08 8.1E-13 93.6 11.9 32 114-146 6-37 (543)
166 PRK07190 hypothetical protein; 98.8 3.6E-08 7.8E-13 92.3 11.6 33 114-146 4-36 (487)
167 PRK07364 2-octaprenyl-6-methox 98.8 2.7E-08 5.9E-13 91.4 10.6 33 114-146 17-49 (415)
168 PRK07608 ubiquinone biosynthes 98.8 2.5E-08 5.4E-13 90.8 10.3 33 114-146 4-36 (388)
169 PTZ00058 glutathione reductase 98.8 9.1E-09 2E-13 97.4 7.5 59 3-61 498-556 (561)
170 PRK11445 putative oxidoreducta 98.8 2.5E-08 5.5E-13 89.6 9.9 29 116-145 2-30 (351)
171 TIGR03364 HpnW_proposed FAD de 98.8 1.9E-07 4.1E-12 84.4 15.7 31 116-146 1-31 (365)
172 PRK12844 3-ketosteroid-delta-1 98.8 1.8E-07 3.9E-12 89.1 16.0 42 114-163 5-46 (557)
173 PRK06184 hypothetical protein; 98.8 2.6E-08 5.6E-13 93.9 10.2 32 115-146 3-34 (502)
174 PRK13512 coenzyme A disulfide 98.8 6.9E-08 1.5E-12 89.4 12.9 133 76-266 104-244 (438)
175 PTZ00052 thioredoxin reductase 98.8 7.6E-09 1.6E-13 97.2 6.6 59 3-61 418-477 (499)
176 PTZ00188 adrenodoxin reductase 98.8 1.5E-08 3.3E-13 93.0 8.3 40 115-162 39-79 (506)
177 PRK07395 L-aspartate oxidase; 98.8 3.1E-08 6.8E-13 94.0 10.6 33 113-146 7-39 (553)
178 KOG0399|consensus 98.8 1.8E-08 3.9E-13 97.9 8.8 110 112-272 1782-1892(2142)
179 TIGR01813 flavo_cyto_c flavocy 98.8 4E-08 8.6E-13 91.1 11.1 35 117-153 1-36 (439)
180 PRK09754 phenylpropionate diox 98.8 6.2E-08 1.3E-12 88.6 12.0 133 76-265 99-243 (396)
181 PRK06416 dihydrolipoamide dehy 98.8 1.7E-08 3.7E-13 94.1 8.1 62 2-63 392-453 (462)
182 PRK07846 mycothione reductase; 98.8 1.7E-08 3.6E-13 93.8 7.9 62 2-63 385-447 (451)
183 PRK07333 2-octaprenyl-6-methox 98.8 5.6E-08 1.2E-12 89.0 11.2 31 116-146 2-34 (403)
184 PRK06183 mhpA 3-(3-hydroxyphen 98.8 4.8E-08 1E-12 92.8 11.1 33 114-146 9-41 (538)
185 TIGR02374 nitri_red_nirB nitri 98.8 1.6E-08 3.5E-13 99.8 7.9 161 49-266 58-241 (785)
186 TIGR02053 MerA mercuric reduct 98.8 2E-08 4.3E-13 93.7 8.2 63 2-64 388-450 (463)
187 TIGR01438 TGR thioredoxin and 98.8 1.8E-08 3.8E-13 94.3 7.7 61 3-63 408-469 (484)
188 PRK07843 3-ketosteroid-delta-1 98.8 1.4E-07 2.9E-12 89.9 13.5 35 114-150 6-40 (557)
189 PRK08013 oxidoreductase; Provi 98.7 5.5E-08 1.2E-12 89.0 10.3 32 115-146 3-34 (400)
190 KOG2311|consensus 98.7 4.8E-08 1E-12 87.6 9.3 33 113-145 26-58 (679)
191 PRK07588 hypothetical protein; 98.7 8.9E-08 1.9E-12 87.3 11.5 30 117-146 2-31 (391)
192 PRK08071 L-aspartate oxidase; 98.7 1.2E-07 2.5E-12 89.4 12.5 31 115-146 3-33 (510)
193 PRK13748 putative mercuric red 98.7 2.6E-08 5.6E-13 95.2 8.1 62 2-63 486-547 (561)
194 PRK09126 hypothetical protein; 98.7 4.1E-08 8.9E-13 89.5 9.1 33 114-146 2-34 (392)
195 PRK06126 hypothetical protein; 98.7 1.3E-07 2.8E-12 90.1 12.4 32 114-145 6-37 (545)
196 PRK09077 L-aspartate oxidase; 98.7 1.9E-07 4E-12 88.6 13.3 33 113-146 6-38 (536)
197 PRK06134 putative FAD-binding 98.7 2.3E-07 5E-12 88.8 13.8 36 113-150 10-45 (581)
198 PRK08020 ubiF 2-octaprenyl-3-m 98.7 6.2E-08 1.3E-12 88.3 9.6 33 114-146 4-36 (391)
199 TIGR03385 CoA_CoA_reduc CoA-di 98.7 1.3E-07 2.9E-12 87.2 11.8 133 78-266 92-236 (427)
200 COG0654 UbiH 2-polyprenyl-6-me 98.7 5.1E-08 1.1E-12 88.8 8.9 32 115-146 2-33 (387)
201 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 9.4E-08 2E-12 87.2 10.6 32 115-146 2-33 (390)
202 PF13450 NAD_binding_8: NAD(P) 98.7 2.1E-08 4.6E-13 67.6 4.5 36 120-163 1-36 (68)
203 PRK07512 L-aspartate oxidase; 98.7 1.4E-07 3E-12 89.0 11.5 32 113-146 7-38 (513)
204 TIGR01350 lipoamide_DH dihydro 98.7 4.5E-08 9.7E-13 91.3 8.1 62 2-63 391-452 (461)
205 PRK13800 putative oxidoreducta 98.7 2.2E-07 4.9E-12 93.1 13.5 33 114-146 12-44 (897)
206 PRK12409 D-amino acid dehydrog 98.7 7.9E-07 1.7E-11 81.6 16.2 45 116-162 2-48 (410)
207 PLN02985 squalene monooxygenas 98.7 7.2E-08 1.6E-12 90.8 9.4 35 112-146 40-74 (514)
208 TIGR01377 soxA_mon sarcosine o 98.7 1.1E-06 2.4E-11 79.7 16.9 30 116-145 1-30 (380)
209 PRK08163 salicylate hydroxylas 98.7 1.5E-07 3.2E-12 85.9 11.3 31 115-145 4-34 (396)
210 PRK05714 2-octaprenyl-3-methyl 98.7 3E-08 6.5E-13 90.9 6.5 32 115-146 2-33 (405)
211 PRK08849 2-octaprenyl-3-methyl 98.7 9.5E-08 2.1E-12 87.0 9.7 32 115-146 3-34 (384)
212 PRK06617 2-octaprenyl-6-methox 98.7 6.5E-08 1.4E-12 87.7 8.5 30 116-145 2-31 (374)
213 PRK12771 putative glutamate sy 98.7 7.2E-08 1.6E-12 92.1 9.1 41 114-162 136-176 (564)
214 PRK08132 FAD-dependent oxidore 98.7 4.5E-07 9.7E-12 86.4 14.4 33 114-146 22-54 (547)
215 PRK12839 hypothetical protein; 98.7 2.8E-07 6.1E-12 87.9 12.7 37 112-150 5-41 (572)
216 TIGR03329 Phn_aa_oxid putative 98.7 1E-06 2.2E-11 82.1 16.3 33 114-146 23-57 (460)
217 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 8.4E-08 1.8E-12 87.3 8.6 32 117-150 2-33 (433)
218 TIGR01988 Ubi-OHases Ubiquinon 98.7 6.8E-08 1.5E-12 87.7 8.2 30 117-146 1-30 (385)
219 PRK05732 2-octaprenyl-6-methox 98.7 3.3E-07 7.1E-12 83.6 12.6 33 114-146 2-37 (395)
220 TIGR01811 sdhA_Bsu succinate d 98.7 3.4E-07 7.4E-12 87.9 13.1 29 118-146 1-29 (603)
221 PRK14989 nitrite reductase sub 98.7 2.2E-07 4.8E-12 92.1 11.9 157 52-265 66-247 (847)
222 PRK07494 2-octaprenyl-6-methox 98.7 2.9E-07 6.3E-12 83.8 11.9 32 114-145 6-37 (388)
223 PTZ00306 NADH-dependent fumara 98.6 3.2E-07 6.9E-12 94.2 13.1 36 113-150 407-442 (1167)
224 PRK00711 D-amino acid dehydrog 98.6 1.4E-06 3.1E-11 80.0 16.3 30 117-146 2-31 (416)
225 TIGR01984 UbiH 2-polyprenyl-6- 98.6 1.5E-07 3.3E-12 85.4 9.7 30 117-146 1-31 (382)
226 PRK11259 solA N-methyltryptoph 98.6 7.5E-07 1.6E-11 80.7 14.0 32 114-145 2-33 (376)
227 PRK07045 putative monooxygenas 98.6 8E-08 1.7E-12 87.5 7.5 33 114-146 4-36 (388)
228 COG1053 SdhA Succinate dehydro 98.6 6E-07 1.3E-11 84.9 13.3 49 114-162 5-53 (562)
229 PF13454 NAD_binding_9: FAD-NA 98.6 3.6E-07 7.9E-12 72.4 9.9 129 119-261 1-155 (156)
230 PRK12837 3-ketosteroid-delta-1 98.6 1.4E-06 3E-11 82.3 15.3 35 114-151 6-40 (513)
231 COG1252 Ndh NADH dehydrogenase 98.6 5.7E-07 1.2E-11 81.1 11.9 166 74-295 96-301 (405)
232 PRK12842 putative succinate de 98.6 8.9E-07 1.9E-11 84.7 14.1 35 114-150 8-42 (574)
233 PRK06185 hypothetical protein; 98.6 2E-07 4.3E-12 85.4 9.2 33 114-146 5-37 (407)
234 PRK07236 hypothetical protein; 98.6 5.2E-07 1.1E-11 82.2 11.8 32 115-146 6-37 (386)
235 PRK10262 thioredoxin reductase 98.6 1E-06 2.2E-11 78.2 13.2 134 75-266 103-251 (321)
236 PRK08850 2-octaprenyl-6-methox 98.6 2.3E-07 5E-12 85.0 9.3 32 115-146 4-35 (405)
237 PRK09897 hypothetical protein; 98.6 1.3E-06 2.8E-11 82.2 14.2 37 116-154 2-40 (534)
238 PRK06753 hypothetical protein; 98.6 1.7E-07 3.6E-12 84.9 8.0 30 117-146 2-31 (373)
239 PRK05335 tRNA (uracil-5-)-meth 98.6 2.4E-07 5.1E-12 84.0 8.7 30 116-145 3-32 (436)
240 PTZ00318 NADH dehydrogenase-li 98.6 2.7E-07 5.7E-12 85.2 9.2 91 117-264 175-281 (424)
241 COG1233 Phytoene dehydrogenase 98.6 7.4E-08 1.6E-12 90.2 5.5 41 114-162 2-42 (487)
242 PF13434 K_oxygenase: L-lysine 98.6 6.3E-07 1.4E-11 80.0 11.1 163 115-295 2-200 (341)
243 PRK12834 putative FAD-binding 98.6 1.2E-06 2.6E-11 83.5 13.6 33 114-146 3-35 (549)
244 PRK12835 3-ketosteroid-delta-1 98.6 3.4E-07 7.3E-12 87.6 9.9 35 114-150 10-44 (584)
245 PRK12843 putative FAD-binding 98.6 1.8E-06 3.9E-11 82.7 14.6 35 114-150 15-49 (578)
246 PF00070 Pyr_redox: Pyridine n 98.5 1.7E-06 3.6E-11 60.3 10.8 32 117-150 1-32 (80)
247 TIGR01292 TRX_reduct thioredox 98.5 2.2E-06 4.7E-11 75.0 14.1 70 75-145 98-171 (300)
248 TIGR02061 aprA adenosine phosp 98.5 1.2E-06 2.7E-11 83.9 13.1 30 117-146 1-34 (614)
249 KOG2820|consensus 98.5 2.4E-06 5.1E-11 73.9 13.4 38 114-153 6-43 (399)
250 KOG0405|consensus 98.5 7.6E-08 1.6E-12 83.2 4.3 57 2-58 412-468 (478)
251 PRK06475 salicylate hydroxylas 98.5 9.2E-07 2E-11 80.9 11.7 31 116-146 3-33 (400)
252 PRK05868 hypothetical protein; 98.5 3.5E-07 7.6E-12 82.9 8.6 30 117-146 3-32 (372)
253 PRK01747 mnmC bifunctional tRN 98.5 3.3E-06 7.2E-11 82.3 15.5 32 115-146 260-291 (662)
254 KOG1336|consensus 98.5 2.7E-07 5.9E-12 83.1 7.1 110 116-272 75-190 (478)
255 TIGR01989 COQ6 Ubiquinone bios 98.5 2.1E-07 4.6E-12 86.2 6.7 31 116-146 1-35 (437)
256 COG0665 DadA Glycine/D-amino a 98.5 2.4E-06 5.3E-11 77.6 13.2 33 114-146 3-35 (387)
257 PLN02172 flavin-containing mon 98.5 8.3E-07 1.8E-11 82.5 10.2 69 77-145 161-234 (461)
258 KOG1800|consensus 98.5 5.2E-07 1.1E-11 79.0 7.9 33 116-150 21-55 (468)
259 PRK06996 hypothetical protein; 98.5 5.6E-07 1.2E-11 82.3 8.4 34 113-146 9-46 (398)
260 TIGR02485 CobZ_N-term precorri 98.5 7.2E-07 1.6E-11 82.5 9.2 27 120-146 1-27 (432)
261 TIGR03169 Nterm_to_SelD pyridi 98.5 7.4E-07 1.6E-11 80.5 9.1 132 75-264 93-244 (364)
262 PRK11101 glpA sn-glycerol-3-ph 98.5 1.1E-05 2.4E-10 76.7 17.4 32 114-145 5-36 (546)
263 COG0029 NadB Aspartate oxidase 98.5 7.9E-07 1.7E-11 80.6 8.9 144 117-261 9-194 (518)
264 COG3380 Predicted NAD/FAD-depe 98.5 1.1E-06 2.4E-11 73.7 9.0 40 117-164 3-42 (331)
265 COG0446 HcaD Uncharacterized N 98.4 1.7E-06 3.6E-11 79.1 11.1 133 75-264 92-238 (415)
266 TIGR03140 AhpF alkyl hydropero 98.4 3.7E-06 8E-11 79.5 13.5 70 75-145 309-382 (515)
267 PRK07538 hypothetical protein; 98.4 5.6E-07 1.2E-11 82.7 7.7 30 117-146 2-31 (413)
268 KOG0029|consensus 98.4 3.2E-07 6.9E-12 85.6 5.8 41 114-162 14-54 (501)
269 PTZ00367 squalene epoxidase; P 98.4 3.9E-07 8.5E-12 86.5 5.9 33 114-146 32-64 (567)
270 COG0579 Predicted dehydrogenas 98.4 1.1E-05 2.3E-10 73.5 14.8 35 114-150 2-38 (429)
271 PF04820 Trp_halogenase: Trypt 98.4 3.7E-06 8.1E-11 78.1 11.9 54 211-266 154-214 (454)
272 PRK12831 putative oxidoreducta 98.4 1.1E-06 2.4E-11 81.8 8.4 90 56-145 202-311 (464)
273 TIGR01373 soxB sarcosine oxida 98.4 1.7E-05 3.8E-10 72.7 16.0 33 114-146 29-63 (407)
274 PRK08294 phenol 2-monooxygenas 98.4 3.3E-06 7.2E-11 81.6 11.4 33 114-146 31-64 (634)
275 KOG2614|consensus 98.3 1.1E-05 2.3E-10 71.9 13.0 31 116-146 3-33 (420)
276 TIGR00031 UDP-GALP_mutase UDP- 98.3 6.4E-07 1.4E-11 80.7 5.4 41 116-164 2-42 (377)
277 PRK07208 hypothetical protein; 98.3 7.5E-07 1.6E-11 83.5 5.8 40 115-162 4-43 (479)
278 PRK12770 putative glutamate sy 98.3 1.9E-05 4.1E-10 71.0 14.6 31 115-145 172-203 (352)
279 KOG1336|consensus 98.3 8.1E-06 1.7E-10 73.8 11.8 158 55-269 137-319 (478)
280 PRK11749 dihydropyrimidine deh 98.3 1.9E-06 4.1E-11 80.3 8.0 70 76-145 224-304 (457)
281 PRK15317 alkyl hydroperoxide r 98.3 2.3E-05 5E-10 74.2 15.4 70 75-145 308-381 (517)
282 TIGR02730 carot_isom carotene 98.3 8.3E-07 1.8E-11 83.5 5.5 39 116-162 1-39 (493)
283 TIGR03219 salicylate_mono sali 98.3 2.2E-06 4.8E-11 78.8 8.1 30 117-146 2-32 (414)
284 PRK08255 salicylyl-CoA 5-hydro 98.3 5.9E-07 1.3E-11 88.6 4.5 29 117-145 2-32 (765)
285 PRK09564 coenzyme A disulfide 98.3 1E-06 2.2E-11 81.7 5.8 58 3-60 376-435 (444)
286 KOG4716|consensus 98.3 1.2E-06 2.5E-11 75.7 5.5 56 3-58 428-484 (503)
287 KOG2415|consensus 98.3 2.3E-06 5E-11 75.9 7.3 42 114-163 75-122 (621)
288 PRK07233 hypothetical protein; 98.3 9.7E-07 2.1E-11 81.4 5.3 38 117-162 1-38 (434)
289 PLN02576 protoporphyrinogen ox 98.3 1E-06 2.2E-11 83.0 5.5 41 114-162 11-52 (496)
290 KOG2495|consensus 98.3 1.3E-05 2.8E-10 71.5 11.9 167 74-295 155-369 (491)
291 PRK11883 protoporphyrinogen ox 98.3 1.1E-06 2.3E-11 81.7 5.4 38 117-162 2-41 (451)
292 TIGR02733 desat_CrtD C-3',4' d 98.3 1E-06 2.3E-11 82.8 5.3 35 116-152 2-36 (492)
293 PLN02268 probable polyamine ox 98.3 1.2E-06 2.7E-11 81.0 5.6 32 117-150 2-33 (435)
294 TIGR00562 proto_IX_ox protopor 98.3 1.3E-06 2.8E-11 81.5 5.5 39 116-162 3-45 (462)
295 COG1251 NirB NAD(P)H-nitrite r 98.3 3.4E-06 7.4E-11 79.8 8.2 114 116-274 4-124 (793)
296 PRK09853 putative selenate red 98.2 2.9E-06 6.3E-11 84.5 8.2 90 56-145 600-700 (1019)
297 TIGR01316 gltA glutamate synth 98.2 3.3E-05 7E-10 71.9 14.0 69 77-145 218-302 (449)
298 COG0562 Glf UDP-galactopyranos 98.2 1.8E-06 3.8E-11 74.2 5.0 40 116-163 2-41 (374)
299 TIGR02734 crtI_fam phytoene de 98.2 1.5E-06 3.2E-11 82.0 5.0 31 118-150 1-31 (502)
300 TIGR01372 soxA sarcosine oxida 98.2 1.8E-05 3.9E-10 80.3 12.7 132 71-265 268-413 (985)
301 COG3349 Uncharacterized conser 98.2 2E-06 4.4E-11 78.7 5.2 38 117-162 2-39 (485)
302 TIGR03315 Se_ygfK putative sel 98.2 4.6E-06 9.9E-11 83.4 7.9 89 57-145 599-698 (1012)
303 PRK12778 putative bifunctional 98.2 7.4E-06 1.6E-10 80.9 9.4 77 69-145 509-601 (752)
304 PRK12779 putative bifunctional 98.2 4.2E-06 9.1E-11 84.0 7.6 93 53-145 364-477 (944)
305 COG1231 Monoamine oxidase [Ami 98.1 3.6E-06 7.7E-11 75.8 5.2 41 114-162 6-46 (450)
306 KOG1298|consensus 98.1 3.8E-05 8.1E-10 67.7 11.3 35 113-147 43-77 (509)
307 KOG2404|consensus 98.1 3.6E-05 7.8E-10 66.3 10.9 38 117-162 11-48 (477)
308 COG1251 NirB NAD(P)H-nitrite r 98.1 1.2E-05 2.6E-10 76.2 8.5 136 74-265 98-245 (793)
309 TIGR02731 phytoene_desat phyto 98.1 3.8E-06 8.2E-11 78.2 5.2 33 117-151 1-33 (453)
310 PTZ00363 rab-GDP dissociation 98.1 3.6E-06 7.8E-11 77.6 4.7 42 114-163 3-44 (443)
311 KOG3851|consensus 98.1 3.4E-06 7.5E-11 72.4 4.1 33 113-145 37-71 (446)
312 PRK12266 glpD glycerol-3-phosp 98.1 5.3E-06 1.2E-10 78.2 5.4 32 114-145 5-36 (508)
313 COG1148 HdrA Heterodisulfide r 98.1 5E-06 1.1E-10 75.1 4.8 41 114-162 123-163 (622)
314 PRK12810 gltD glutamate syntha 98.0 1.7E-05 3.7E-10 74.2 8.5 70 76-145 227-312 (471)
315 TIGR03143 AhpF_homolog putativ 98.0 8.9E-05 1.9E-09 70.8 13.3 69 76-145 101-173 (555)
316 PRK12416 protoporphyrinogen ox 98.0 6.4E-06 1.4E-10 76.9 5.3 38 117-162 3-46 (463)
317 KOG2495|consensus 98.0 3.9E-05 8.5E-10 68.5 9.8 119 114-274 54-181 (491)
318 COG4529 Uncharacterized protei 98.0 7.1E-05 1.5E-09 68.1 11.6 33 116-150 2-37 (474)
319 PLN02568 polyamine oxidase 98.0 7.6E-06 1.7E-10 77.5 5.7 40 115-162 5-49 (539)
320 PRK13369 glycerol-3-phosphate 98.0 7.4E-06 1.6E-10 77.2 5.5 32 114-145 5-36 (502)
321 PLN02529 lysine-specific histo 98.0 8.5E-06 1.8E-10 79.3 5.8 36 114-151 159-194 (738)
322 TIGR03385 CoA_CoA_reduc CoA-di 98.0 9.8E-06 2.1E-10 74.8 6.1 55 2-56 362-418 (427)
323 PLN02676 polyamine oxidase 98.0 8.6E-06 1.9E-10 76.4 5.2 36 114-151 25-61 (487)
324 PRK12814 putative NADPH-depend 97.9 5.2E-05 1.1E-09 73.7 9.9 69 77-145 278-354 (652)
325 PLN02464 glycerol-3-phosphate 97.9 1.2E-05 2.6E-10 77.6 5.4 32 114-145 70-101 (627)
326 TIGR01320 mal_quin_oxido malat 97.9 1.3E-05 2.7E-10 75.1 5.0 30 116-145 1-32 (483)
327 PF00732 GMC_oxred_N: GMC oxid 97.9 1E-05 2.2E-10 70.8 4.0 32 116-147 1-33 (296)
328 PRK05329 anaerobic glycerol-3- 97.9 1.4E-05 3.1E-10 73.2 4.9 32 115-146 2-33 (422)
329 COG3573 Predicted oxidoreducta 97.9 6.4E-05 1.4E-09 65.2 8.4 45 114-164 4-48 (552)
330 COG1232 HemY Protoporphyrinoge 97.9 1.5E-05 3.3E-10 72.9 4.9 38 117-162 2-41 (444)
331 TIGR01318 gltD_gamma_fam gluta 97.9 0.0001 2.2E-09 68.9 10.5 31 115-145 282-313 (467)
332 TIGR02732 zeta_caro_desat caro 97.9 1.8E-05 3.8E-10 74.1 5.3 32 117-150 1-32 (474)
333 TIGR02462 pyranose_ox pyranose 97.9 1.6E-05 3.4E-10 75.0 5.0 33 116-150 1-33 (544)
334 PRK01438 murD UDP-N-acetylmura 97.9 5.4E-05 1.2E-09 71.1 8.5 30 116-145 17-46 (480)
335 TIGR03862 flavo_PP4765 unchara 97.9 4.4E-05 9.5E-10 68.8 7.4 122 138-263 1-141 (376)
336 KOG2755|consensus 97.9 4.9E-05 1.1E-09 63.7 7.0 29 117-145 1-31 (334)
337 PRK13339 malate:quinone oxidor 97.8 2.5E-05 5.4E-10 73.0 5.7 33 113-145 4-38 (497)
338 PRK05257 malate:quinone oxidor 97.8 2.1E-05 4.6E-10 73.8 5.1 32 114-145 4-37 (494)
339 PLN02328 lysine-specific histo 97.8 2.9E-05 6.3E-10 76.1 5.8 37 114-152 237-273 (808)
340 PRK13977 myosin-cross-reactive 97.8 3.3E-05 7.3E-10 72.6 6.0 39 115-155 22-64 (576)
341 COG3486 IucD Lysine/ornithine 97.8 0.00016 3.4E-09 64.5 9.3 32 114-145 4-36 (436)
342 COG3075 GlpB Anaerobic glycero 97.7 3.4E-05 7.3E-10 66.7 4.3 33 114-146 1-33 (421)
343 PLN02487 zeta-carotene desatur 97.7 4.2E-05 9.1E-10 72.7 5.2 37 115-153 75-111 (569)
344 PLN02612 phytoene desaturase 97.7 4.4E-05 9.6E-10 73.0 5.3 35 114-150 92-126 (567)
345 PRK12769 putative oxidoreducta 97.7 0.00044 9.6E-09 67.4 11.9 31 115-145 468-499 (654)
346 KOG0685|consensus 97.7 5.6E-05 1.2E-09 68.4 5.0 40 115-162 21-61 (498)
347 COG0492 TrxB Thioredoxin reduc 97.7 0.0028 6.1E-08 55.7 15.5 126 76-265 102-240 (305)
348 PRK12775 putative trifunctiona 97.7 0.00035 7.7E-09 71.0 11.1 92 54-145 489-602 (1006)
349 PLN02927 antheraxanthin epoxid 97.7 5E-05 1.1E-09 73.2 4.8 33 114-146 80-112 (668)
350 PLN03000 amine oxidase 97.7 5.9E-05 1.3E-09 74.2 5.3 35 114-150 183-217 (881)
351 KOG4254|consensus 97.6 6.1E-05 1.3E-09 67.7 4.6 48 114-169 13-60 (561)
352 PF13434 K_oxygenase: L-lysine 97.6 0.00034 7.3E-09 62.6 9.2 32 114-145 189-222 (341)
353 KOG2844|consensus 97.6 0.0023 5E-08 60.5 14.6 30 116-145 40-69 (856)
354 PRK02106 choline dehydrogenase 97.6 6.2E-05 1.3E-09 72.0 4.5 34 114-147 4-38 (560)
355 PLN02976 amine oxidase 97.6 0.0001 2.2E-09 75.5 5.6 35 114-150 692-726 (1713)
356 COG0578 GlpA Glycerol-3-phosph 97.5 0.00011 2.4E-09 68.5 5.1 35 114-150 11-45 (532)
357 PRK13984 putative oxidoreducta 97.5 0.00034 7.4E-09 67.6 8.3 70 76-145 367-454 (604)
358 PTZ00383 malate:quinone oxidor 97.5 0.00011 2.5E-09 68.8 4.7 32 114-145 44-77 (497)
359 PF00743 FMO-like: Flavin-bind 97.5 0.00097 2.1E-08 63.2 10.7 69 77-145 138-213 (531)
360 KOG2852|consensus 97.5 0.0025 5.4E-08 54.5 11.9 30 116-145 11-46 (380)
361 KOG1276|consensus 97.4 0.00018 3.8E-09 64.4 4.7 35 114-150 10-46 (491)
362 PRK12809 putative oxidoreducta 97.4 0.0025 5.4E-08 62.0 12.2 32 114-145 450-482 (639)
363 COG1206 Gid NAD(FAD)-utilizing 97.3 0.00027 5.8E-09 61.3 4.3 36 117-154 5-40 (439)
364 PF06039 Mqo: Malate:quinone o 97.3 0.0041 9E-08 56.8 12.0 35 114-150 2-38 (488)
365 COG2303 BetA Choline dehydroge 97.3 0.00022 4.7E-09 67.8 3.9 34 114-147 6-39 (542)
366 PF13738 Pyr_redox_3: Pyridine 97.3 0.00062 1.3E-08 55.9 5.9 69 75-145 124-197 (203)
367 TIGR03378 glycerol3P_GlpB glyc 97.2 0.00035 7.6E-09 63.7 4.5 31 116-146 1-31 (419)
368 TIGR01810 betA choline dehydro 97.2 0.00029 6.3E-09 67.0 3.9 31 117-147 1-32 (532)
369 KOG2853|consensus 97.2 0.00046 9.9E-09 60.2 4.5 49 114-164 85-140 (509)
370 PRK06567 putative bifunctional 97.1 0.0025 5.4E-08 63.6 9.5 82 64-145 484-583 (1028)
371 PLN02785 Protein HOTHEAD 97.1 0.00049 1.1E-08 66.0 4.4 33 114-147 54-86 (587)
372 KOG2960|consensus 97.1 0.00016 3.4E-09 58.9 0.7 31 115-145 76-108 (328)
373 COG2509 Uncharacterized FAD-de 97.1 0.012 2.7E-07 53.4 12.2 32 114-145 17-53 (486)
374 COG3634 AhpF Alkyl hydroperoxi 96.9 0.01 2.2E-07 52.2 9.8 33 114-146 353-385 (520)
375 PRK14106 murD UDP-N-acetylmura 96.9 0.0039 8.5E-08 58.0 8.0 31 115-145 5-35 (450)
376 COG2907 Predicted NAD/FAD-bind 96.8 0.0011 2.3E-08 58.1 3.6 33 115-150 8-40 (447)
377 COG0446 HcaD Uncharacterized N 96.8 0.0044 9.6E-08 56.5 8.0 28 118-145 1-30 (415)
378 PRK02705 murD UDP-N-acetylmura 96.8 0.0049 1.1E-07 57.5 8.0 29 117-145 2-30 (459)
379 KOG0042|consensus 96.8 0.0024 5.3E-08 58.9 5.3 35 114-150 66-100 (680)
380 PRK05675 sdhA succinate dehydr 96.7 0.0095 2.1E-07 57.2 9.3 134 128-261 1-187 (570)
381 KOG2665|consensus 96.7 0.0015 3.1E-08 56.6 3.0 38 114-153 47-86 (453)
382 COG3486 IucD Lysine/ornithine 96.6 0.012 2.6E-07 52.8 8.7 24 244-267 321-344 (436)
383 PRK12771 putative glutamate sy 96.5 0.062 1.4E-06 51.6 13.5 69 77-145 222-298 (564)
384 PF00996 GDI: GDP dissociation 96.5 0.0041 8.8E-08 57.2 4.9 42 114-163 3-44 (438)
385 KOG1238|consensus 96.3 0.0038 8.3E-08 59.0 3.9 33 113-145 55-88 (623)
386 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0068 1.5E-07 47.9 4.0 29 117-145 1-29 (157)
387 KOG3855|consensus 96.1 0.0062 1.4E-07 54.6 3.8 32 114-145 35-70 (481)
388 KOG1346|consensus 96.1 0.02 4.3E-07 51.5 6.9 46 218-265 400-451 (659)
389 PLN02852 ferredoxin-NADP+ redu 96.0 0.00047 1E-08 64.4 -3.6 71 66-137 104-188 (491)
390 PF03721 UDPG_MGDP_dh_N: UDP-g 96.0 0.0085 1.8E-07 48.7 4.0 29 117-145 2-30 (185)
391 COG2072 TrkA Predicted flavopr 95.7 0.022 4.9E-07 52.9 6.0 69 76-145 131-205 (443)
392 TIGR01317 GOGAT_sm_gam glutama 95.7 0.0088 1.9E-07 56.3 3.3 70 76-145 227-314 (485)
393 PF02737 3HCDH_N: 3-hydroxyacy 95.6 0.016 3.5E-07 46.8 4.3 29 117-145 1-29 (180)
394 COG0569 TrkA K+ transport syst 95.6 0.017 3.8E-07 48.5 4.4 29 117-145 2-30 (225)
395 PF01593 Amino_oxidase: Flavin 95.6 0.013 2.7E-07 53.5 3.8 30 125-162 1-30 (450)
396 PF13241 NAD_binding_7: Putati 95.6 0.01 2.3E-07 43.2 2.6 31 115-145 7-37 (103)
397 PF02558 ApbA: Ketopantoate re 95.5 0.023 5E-07 44.3 4.5 28 118-145 1-28 (151)
398 TIGR01470 cysG_Nterm siroheme 95.4 0.023 5E-07 47.0 4.5 30 116-145 10-39 (205)
399 PRK06719 precorrin-2 dehydroge 95.4 0.026 5.6E-07 44.6 4.4 31 115-145 13-43 (157)
400 COG1893 ApbA Ketopantoate redu 95.2 0.062 1.3E-06 47.4 6.8 29 117-145 2-30 (307)
401 KOG0399|consensus 95.2 0.0041 8.8E-08 62.1 -0.8 109 54-165 1844-1973(2142)
402 KOG0404|consensus 95.1 0.19 4.2E-06 41.7 8.7 70 76-145 111-187 (322)
403 PRK01710 murD UDP-N-acetylmura 95.0 0.061 1.3E-06 50.2 6.5 30 116-145 15-44 (458)
404 PRK06718 precorrin-2 dehydroge 95.0 0.038 8.2E-07 45.6 4.5 31 115-145 10-40 (202)
405 PF01262 AlaDh_PNT_C: Alanine 95.0 0.039 8.5E-07 44.1 4.5 30 116-145 21-50 (168)
406 PRK15116 sulfur acceptor prote 94.9 0.041 8.9E-07 47.4 4.5 31 115-145 30-61 (268)
407 PRK05329 anaerobic glycerol-3- 94.8 0.23 5.1E-06 45.8 9.7 47 216-262 264-317 (422)
408 TIGR01816 sdhA_forward succina 94.8 0.21 4.5E-06 48.1 9.7 49 213-261 121-179 (565)
409 COG1004 Ugd Predicted UDP-gluc 94.5 0.05 1.1E-06 48.8 4.2 29 117-145 2-30 (414)
410 COG0686 Ald Alanine dehydrogen 94.4 0.037 8E-07 48.0 3.2 31 115-145 168-198 (371)
411 PRK05708 2-dehydropantoate 2-r 94.4 0.063 1.4E-06 47.3 4.7 30 117-146 4-33 (305)
412 PF00899 ThiF: ThiF family; I 94.3 0.058 1.3E-06 41.3 3.9 30 116-145 3-33 (135)
413 KOG3923|consensus 94.3 0.25 5.3E-06 42.8 7.8 30 116-145 4-40 (342)
414 PRK06129 3-hydroxyacyl-CoA deh 94.3 0.058 1.3E-06 47.6 4.3 29 117-145 4-32 (308)
415 PF06100 Strep_67kDa_ant: Stre 94.3 0.13 2.9E-06 47.6 6.6 36 117-154 4-43 (500)
416 PRK12921 2-dehydropantoate 2-r 94.2 0.064 1.4E-06 47.1 4.5 29 117-145 2-30 (305)
417 PRK08293 3-hydroxybutyryl-CoA 94.1 0.071 1.5E-06 46.5 4.5 29 117-145 5-33 (287)
418 PRK09260 3-hydroxybutyryl-CoA 93.9 0.081 1.8E-06 46.2 4.5 29 117-145 3-31 (288)
419 PF13478 XdhC_C: XdhC Rossmann 93.9 0.072 1.5E-06 41.0 3.6 28 118-145 1-28 (136)
420 PRK04148 hypothetical protein; 93.9 0.062 1.4E-06 41.0 3.2 29 116-145 18-46 (134)
421 PRK09424 pntA NAD(P) transhydr 93.9 0.078 1.7E-06 49.9 4.4 31 115-145 165-195 (509)
422 TIGR02354 thiF_fam2 thiamine b 93.8 0.092 2E-06 43.2 4.3 31 115-145 21-52 (200)
423 KOG4405|consensus 93.8 0.079 1.7E-06 47.7 4.0 43 114-164 7-49 (547)
424 PRK06522 2-dehydropantoate 2-r 93.8 0.09 1.9E-06 46.1 4.5 29 117-145 2-30 (304)
425 PRK07819 3-hydroxybutyryl-CoA 93.7 0.089 1.9E-06 45.9 4.3 29 117-145 7-35 (286)
426 PRK07066 3-hydroxybutyryl-CoA 93.6 0.097 2.1E-06 46.4 4.4 30 116-145 8-37 (321)
427 KOG1399|consensus 93.6 0.14 3E-06 47.5 5.5 136 10-145 37-216 (448)
428 PF01488 Shikimate_DH: Shikima 93.6 0.16 3.5E-06 38.9 5.1 32 114-145 11-43 (135)
429 cd00401 AdoHcyase S-adenosyl-L 93.6 0.098 2.1E-06 47.9 4.5 32 114-145 201-232 (413)
430 PRK06249 2-dehydropantoate 2-r 93.6 0.13 2.8E-06 45.4 5.1 30 116-145 6-35 (313)
431 TIGR00518 alaDH alanine dehydr 93.5 0.1 2.2E-06 47.3 4.4 31 115-145 167-197 (370)
432 TIGR01763 MalateDH_bact malate 93.4 0.11 2.5E-06 45.7 4.4 29 117-145 3-32 (305)
433 PRK07530 3-hydroxybutyryl-CoA 93.4 0.11 2.5E-06 45.3 4.4 29 117-145 6-34 (292)
434 PRK05808 3-hydroxybutyryl-CoA 93.4 0.12 2.5E-06 45.0 4.4 29 117-145 5-33 (282)
435 cd01483 E1_enzyme_family Super 93.3 0.14 3E-06 39.6 4.3 29 117-145 1-30 (143)
436 PRK06035 3-hydroxyacyl-CoA deh 93.3 0.12 2.6E-06 45.2 4.4 29 117-145 5-33 (291)
437 cd05292 LDH_2 A subgroup of L- 93.2 0.12 2.7E-06 45.5 4.4 29 117-145 2-32 (308)
438 cd01487 E1_ThiF_like E1_ThiF_l 93.2 0.15 3.3E-06 41.0 4.6 29 117-145 1-30 (174)
439 COG0493 GltD NADPH-dependent g 93.2 0.014 3E-07 54.2 -1.7 126 16-145 146-293 (457)
440 PRK08229 2-dehydropantoate 2-r 93.2 0.13 2.9E-06 45.9 4.6 29 117-145 4-32 (341)
441 TIGR02356 adenyl_thiF thiazole 93.1 0.15 3.2E-06 42.1 4.4 31 115-145 21-52 (202)
442 PF02254 TrkA_N: TrkA-N domain 93.0 0.18 3.8E-06 37.3 4.4 28 118-145 1-28 (116)
443 cd01080 NAD_bind_m-THF_DH_Cycl 93.0 0.17 3.7E-06 40.4 4.4 32 114-145 43-75 (168)
444 PRK12475 thiamine/molybdopteri 92.9 0.15 3.2E-06 45.6 4.4 31 115-145 24-55 (338)
445 PRK05562 precorrin-2 dehydroge 92.8 0.17 3.6E-06 42.3 4.4 31 115-145 25-55 (223)
446 PRK07688 thiamine/molybdopteri 92.7 0.17 3.7E-06 45.2 4.6 31 115-145 24-55 (339)
447 PRK11064 wecC UDP-N-acetyl-D-m 92.6 0.16 3.4E-06 46.9 4.3 30 116-145 4-33 (415)
448 TIGR03736 PRTRC_ThiF PRTRC sys 92.5 0.18 3.8E-06 42.8 4.2 31 115-145 11-52 (244)
449 PF00056 Ldh_1_N: lactate/mala 92.5 0.23 5E-06 38.4 4.6 29 117-145 2-33 (141)
450 TIGR03197 MnmC_Cterm tRNA U-34 92.3 2.9 6.4E-05 37.9 12.3 17 130-146 1-17 (381)
451 cd01492 Aos1_SUMO Ubiquitin ac 92.3 0.21 4.6E-06 41.0 4.4 31 115-145 21-52 (197)
452 cd01485 E1-1_like Ubiquitin ac 92.3 0.23 4.9E-06 40.9 4.5 31 115-145 19-50 (198)
453 TIGR03026 NDP-sugDHase nucleot 92.2 0.18 3.9E-06 46.4 4.3 29 117-145 2-30 (411)
454 PRK03369 murD UDP-N-acetylmura 92.1 0.19 4.1E-06 47.4 4.3 30 116-145 13-42 (488)
455 PRK05690 molybdopterin biosynt 92.1 0.22 4.9E-06 42.3 4.4 31 115-145 32-63 (245)
456 PRK06130 3-hydroxybutyryl-CoA 92.1 0.24 5.1E-06 43.7 4.7 29 117-145 6-34 (311)
457 PRK08644 thiamine biosynthesis 92.0 0.26 5.7E-06 41.0 4.6 31 115-145 28-59 (212)
458 PRK08328 hypothetical protein; 92.0 0.24 5.1E-06 41.8 4.4 31 115-145 27-58 (231)
459 cd01075 NAD_bind_Leu_Phe_Val_D 92.0 0.25 5.4E-06 40.7 4.4 31 115-145 28-58 (200)
460 PRK00066 ldh L-lactate dehydro 91.9 0.26 5.7E-06 43.6 4.7 31 115-145 6-38 (315)
461 cd01490 Ube1_repeat2 Ubiquitin 91.9 0.22 4.7E-06 45.9 4.2 29 117-145 1-35 (435)
462 PRK14620 NAD(P)H-dependent gly 91.9 0.23 5E-06 44.1 4.4 29 117-145 2-30 (326)
463 cd00757 ThiF_MoeB_HesA_family 91.8 0.25 5.5E-06 41.5 4.4 31 115-145 21-52 (228)
464 PLN02353 probable UDP-glucose 91.8 0.23 5E-06 46.5 4.4 29 117-145 3-33 (473)
465 PRK06223 malate dehydrogenase; 91.8 0.24 5.3E-06 43.6 4.4 29 117-145 4-33 (307)
466 TIGR00936 ahcY adenosylhomocys 91.8 0.24 5.2E-06 45.3 4.4 32 114-145 194-225 (406)
467 TIGR00561 pntA NAD(P) transhyd 91.6 0.25 5.3E-06 46.5 4.4 31 115-145 164-194 (511)
468 TIGR02355 moeB molybdopterin s 91.6 0.28 6.1E-06 41.6 4.4 31 115-145 24-55 (240)
469 PRK02472 murD UDP-N-acetylmura 91.6 0.22 4.9E-06 46.2 4.2 30 116-145 6-35 (447)
470 PRK14619 NAD(P)H-dependent gly 91.5 0.32 7E-06 42.9 4.9 30 116-145 5-34 (308)
471 PTZ00082 L-lactate dehydrogena 91.5 0.28 6.1E-06 43.5 4.5 30 116-145 7-37 (321)
472 PRK04308 murD UDP-N-acetylmura 91.4 0.27 5.8E-06 45.8 4.5 30 116-145 6-35 (445)
473 PLN02545 3-hydroxybutyryl-CoA 91.4 0.28 6E-06 42.9 4.4 29 117-145 6-34 (295)
474 cd05291 HicDH_like L-2-hydroxy 91.4 0.28 6.1E-06 43.2 4.4 29 117-145 2-32 (306)
475 cd05290 LDH_3 A subgroup of L- 91.4 0.29 6.3E-06 43.1 4.4 29 117-145 1-31 (307)
476 COG5044 MRS6 RAB proteins gera 91.3 0.34 7.3E-06 43.2 4.7 41 114-162 5-45 (434)
477 cd00755 YgdL_like Family of ac 91.3 0.31 6.7E-06 41.1 4.3 31 115-145 11-42 (231)
478 cd01484 E1-2_like Ubiquitin ac 91.3 0.33 7E-06 41.0 4.4 29 117-145 1-30 (234)
479 COG1748 LYS9 Saccharopine dehy 91.3 0.31 6.7E-06 44.2 4.5 30 117-146 3-33 (389)
480 cd05311 NAD_bind_2_malic_enz N 91.2 0.36 7.8E-06 40.6 4.6 31 115-145 25-58 (226)
481 cd01488 Uba3_RUB Ubiquitin act 91.2 0.31 6.7E-06 42.5 4.3 29 117-145 1-30 (291)
482 PRK05476 S-adenosyl-L-homocyst 91.1 0.3 6.5E-06 44.9 4.3 32 114-145 211-242 (425)
483 TIGR02964 xanthine_xdhC xanthi 91.0 0.33 7.1E-06 41.3 4.3 30 116-145 101-130 (246)
484 cd01489 Uba2_SUMO Ubiquitin ac 90.9 0.31 6.7E-06 43.0 4.1 29 117-145 1-30 (312)
485 PRK00094 gpsA NAD(P)H-dependen 90.8 0.34 7.4E-06 42.8 4.5 29 117-145 3-31 (325)
486 PRK14618 NAD(P)H-dependent gly 90.7 0.38 8.3E-06 42.8 4.6 29 117-145 6-34 (328)
487 PRK08306 dipicolinate synthase 90.7 0.42 9E-06 41.9 4.7 31 115-145 152-182 (296)
488 PRK04690 murD UDP-N-acetylmura 90.5 0.32 6.8E-06 45.6 4.1 30 116-145 9-38 (468)
489 PRK12549 shikimate 5-dehydroge 90.5 0.43 9.3E-06 41.6 4.6 31 115-145 127-158 (284)
490 PTZ00117 malate dehydrogenase; 90.4 0.42 9.1E-06 42.4 4.6 30 116-145 6-36 (319)
491 PF00670 AdoHcyase_NAD: S-aden 90.4 0.44 9.5E-06 37.6 4.1 31 115-145 23-53 (162)
492 cd05293 LDH_1 A subgroup of L- 90.3 0.45 9.7E-06 42.1 4.6 30 116-145 4-35 (312)
493 cd01339 LDH-like_MDH L-lactate 90.3 0.35 7.5E-06 42.5 3.9 28 118-145 1-29 (300)
494 TIGR02853 spore_dpaA dipicolin 90.2 0.46 9.9E-06 41.5 4.6 32 114-145 150-181 (287)
495 PRK15057 UDP-glucose 6-dehydro 90.2 0.4 8.6E-06 43.8 4.3 28 117-145 2-29 (388)
496 PRK08223 hypothetical protein; 90.2 0.45 9.7E-06 41.3 4.4 31 115-145 27-58 (287)
497 COG0771 MurD UDP-N-acetylmuram 90.1 0.33 7.1E-06 44.9 3.7 31 115-145 7-37 (448)
498 cd01486 Apg7 Apg7 is an E1-lik 90.0 0.44 9.6E-06 41.6 4.2 29 117-145 1-30 (307)
499 PRK11730 fadB multifunctional 90.0 0.38 8.3E-06 47.6 4.3 30 116-145 314-343 (715)
500 PRK00141 murD UDP-N-acetylmura 90.0 0.44 9.5E-06 44.8 4.5 30 116-145 16-45 (473)
No 1
>KOG4716|consensus
Probab=99.96 E-value=3.2e-28 Score=205.86 Aligned_cols=179 Identities=50% Similarity=0.928 Sum_probs=162.5
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH 192 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 192 (296)
..+||.+|||||.+|++||.+++..|.+|.++|+..+.+.|++|.+||+|.|.||+|++++++++.+.+.+.....|||.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCC
Q psy7665 193 MKK---SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP 266 (296)
Q Consensus 193 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p 266 (296)
.+. +.+|..+.+..++.+..++|.++-.+++..|+.+++...+.+++++.. .++++.+.|+.+|+|||.+|++|
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp 176 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYP 176 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCCC
Confidence 876 789999999999999999999888899989999999999999998876 45567889999999999999999
Q ss_pred CCCCCccceeec--ccC-CCCCCcEEEe
Q psy7665 267 DIPGARLLRTLS--LLS-GVDPPTLIFL 291 (296)
Q Consensus 267 ~i~G~~~~~~~s--~~~-~~~~~~~~~~ 291 (296)
+|||..++.++| +|+ .+.|.+-+++
T Consensus 177 ~IpG~~Ey~ITSDDlFsl~~~PGkTLvV 204 (503)
T KOG4716|consen 177 DIPGAKEYGITSDDLFSLPYEPGKTLVV 204 (503)
T ss_pred CCCCceeeeecccccccccCCCCceEEE
Confidence 999999999998 455 4445554444
No 2
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.94 E-value=9.3e-26 Score=205.47 Aligned_cols=173 Identities=37% Similarity=0.562 Sum_probs=150.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhccc-ccCcc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSD-NFGFH 192 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~g~~ 192 (296)
..||++|||+||+|..+|.++++.|.+|+++| +.. .+||+|.|.||+|++.+.+.+.......... .+|+.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE--~~~------~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~ 74 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVE--KGE------RLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGIS 74 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEe--ecC------CcCceEEeeCccccHHHHHHHHHHHHHhhccccccee
Confidence 57899999999999999999999999999999 554 6999999999999999999999888877765 68888
Q ss_pred ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcc-eeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665 193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAG-EERTVSAQNFIIAVGGRPTYPDIPG 270 (296)
Q Consensus 193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g-~~~~~~a~~vV~AtG~~p~~p~i~G 270 (296)
... .++|.++..+.+...+.+...+...++.++|+++.+++.+.++++|.+++ +.+++.++++|+|||++|+.|++||
T Consensus 75 ~~~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~ 154 (454)
T COG1249 75 AEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPG 154 (454)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCC
Confidence 876 69999999999997777777888888888999999999999999999933 3478999999999999999999998
Q ss_pred Ccc-ceeec---ccCCCCCCcEEEeecc
Q psy7665 271 ARL-LRTLS---LLSGVDPPTLIFLEHI 294 (296)
Q Consensus 271 ~~~-~~~~s---~~~~~~~~~~~~~~~~ 294 (296)
.+. .+++| ++..+.|++++|++++
T Consensus 155 ~~~~~~~~s~~~l~~~~lP~~lvIiGgG 182 (454)
T COG1249 155 IDGARILDSSDALFLLELPKSLVIVGGG 182 (454)
T ss_pred CCCCeEEechhhcccccCCCEEEEECCC
Confidence 874 35555 4556889999999864
No 3
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.93 E-value=2.1e-24 Score=200.72 Aligned_cols=180 Identities=52% Similarity=0.868 Sum_probs=147.9
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK 194 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (296)
.|||+||||||+|+.+|..+++.|++|+++|+..+.+.++++.+||+|.|++|+|++++.+.+...........+|+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 47999999999999999999999999999993223333455578999999999999999998887777666677787653
Q ss_pred c--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665 195 K--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP 269 (296)
Q Consensus 195 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i~ 269 (296)
. .++|..+.++.+...+.+...+...++..+|+++.+.+.+.+++++.+ +++...+.+|+||+|||++|+.|++|
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip 161 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP 161 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence 3 679999999999998888777778888899999999999988888887 34345799999999999999999999
Q ss_pred CCccceeec--ccCC-CCCCcEEEeecc
Q psy7665 270 GARLLRTLS--LLSG-VDPPTLIFLEHI 294 (296)
Q Consensus 270 G~~~~~~~s--~~~~-~~~~~~~~~~~~ 294 (296)
|.++...++ .+.. ..|++++||+++
T Consensus 162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG 189 (484)
T TIGR01438 162 GAKELCITSDDLFSLPYCPGKTLVVGAS 189 (484)
T ss_pred CccceeecHHHhhcccccCCCEEEECCC
Confidence 986655555 3333 356778888764
No 4
>PTZ00058 glutathione reductase; Provisional
Probab=99.92 E-value=2.9e-24 Score=201.81 Aligned_cols=172 Identities=37% Similarity=0.675 Sum_probs=143.3
Q ss_pred CCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF 191 (296)
Q Consensus 112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 191 (296)
.+.+|||+||||||+|+.||..+++.|.+|+|+| + . .+||+|.|+||+|++.+.+.+...........+|+
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIE--k-~------~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi 115 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVE--K-D------YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGF 115 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEe--c-c------cccccccccCCCCCchhhhhcccHHHHHHHHhcCC
Confidence 3467999999999999999999999999999999 3 2 79999999999999999998888887777777887
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE----------------------------
Q psy7665 192 HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---------------------------- 243 (296)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---------------------------- 243 (296)
.....++|..+.++.+...+.+...+...+++.||+++.+++.+.++++|.+
T Consensus 116 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (561)
T PTZ00058 116 DTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQL 195 (561)
T ss_pred CccCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceec
Confidence 6433679999999988888888777788888899999999998887777642
Q ss_pred cceeEEEEeCeEEEcCCCCCCCCCCCCCccceeec--ccCCCCCCcEEEeecc
Q psy7665 244 AGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLS--LLSGVDPPTLIFLEHI 294 (296)
Q Consensus 244 ~g~~~~~~a~~vV~AtG~~p~~p~i~G~~~~~~~s--~~~~~~~~~~~~~~~~ 294 (296)
++ ...+.||+||+|||++|..|++||.+ +++++ ++....|++++|++++
T Consensus 196 ~~-g~~i~ad~lVIATGS~P~~P~IpG~~-~v~ts~~~~~l~~pk~VvIIGgG 246 (561)
T PTZ00058 196 DD-GQVIEGKNILIAVGNKPIFPDVKGKE-FTISSDDFFKIKEAKRIGIAGSG 246 (561)
T ss_pred CC-CcEEECCEEEEecCCCCCCCCCCCce-eEEEHHHHhhccCCCEEEEECCc
Confidence 12 14699999999999999999999974 45555 3444458889998764
No 5
>PLN02546 glutathione reductase
Probab=99.92 E-value=3.4e-24 Score=201.35 Aligned_cols=177 Identities=35% Similarity=0.616 Sum_probs=147.0
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC---CCCcccccCCeeeccCCCchhHHHHhhhhHHHhhccccc
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS---QHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNF 189 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~---~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 189 (296)
..+|||+||||||+|+.+|..+++.|++|+|+| ++- +.+.+..+||+|.|+||+|++.+.+.............+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE--~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~ 154 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCE--LPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGF 154 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEe--ccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhc
Confidence 356899999999999999999999999999999 421 112223789999999999999999999888888878888
Q ss_pred Ccccc-c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCC
Q psy7665 190 GFHMK-K-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD 267 (296)
Q Consensus 190 g~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~ 267 (296)
|+... . .++|..+..+.+...+++...+...+++.+|+++.++..+.+.+.+.++| ..+.||+||+|||++|..|+
T Consensus 155 g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G--~~~~~D~LVIATGs~p~~P~ 232 (558)
T PLN02546 155 GWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDG--KLYTARNILIAVGGRPFIPD 232 (558)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECC--EEEECCEEEEeCCCCCCCCC
Confidence 88653 2 78999999999999999888888889999999999988888888888877 57999999999999999999
Q ss_pred CCCCccceeec--cc-CCCCCCcEEEeecc
Q psy7665 268 IPGARLLRTLS--LL-SGVDPPTLIFLEHI 294 (296)
Q Consensus 268 i~G~~~~~~~s--~~-~~~~~~~~~~~~~~ 294 (296)
+||.+. +.++ .+ ....+++++||+++
T Consensus 233 IpG~~~-v~~~~~~l~~~~~~k~V~VIGgG 261 (558)
T PLN02546 233 IPGIEH-AIDSDAALDLPSKPEKIAIVGGG 261 (558)
T ss_pred CCChhh-ccCHHHHHhccccCCeEEEECCC
Confidence 999753 4444 22 23457788888764
No 6
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.92 E-value=1.5e-23 Score=193.85 Aligned_cols=168 Identities=36% Similarity=0.649 Sum_probs=140.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK 194 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (296)
+|||+||||||+|++||.+++++|++|+|+| + + .+||+|.+.+|+|++.+.+.....+.......+|+...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie--~-~------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~ 72 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAE--E-P------RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG 72 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEe--c-C------ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC
Confidence 5899999999999999999999999999999 4 3 78999999999999999999988888887788887654
Q ss_pred c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCCCCC
Q psy7665 195 K-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA 271 (296)
Q Consensus 195 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i~G~ 271 (296)
. .++|..+..+.+.....+...+...++..+++++.+++...+.+.+.+ ++ ..+.||+||+|||++|..|++||.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g--~~~~~d~lIiATGs~p~~p~i~G~ 150 (446)
T TIGR01424 73 KARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDG--TTYTAKKILIAVGGRPQKPNLPGH 150 (446)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCC--eEEEcCEEEEecCCcCCCCCCCCc
Confidence 4 789999999988888888777888888999999998887777777776 44 578999999999999999999997
Q ss_pred ccceeec--ccC-CCCCCcEEEeecc
Q psy7665 272 RLLRTLS--LLS-GVDPPTLIFLEHI 294 (296)
Q Consensus 272 ~~~~~~s--~~~-~~~~~~~~~~~~~ 294 (296)
+. ..++ .+. ...+++++|++++
T Consensus 151 ~~-~~~~~~~~~l~~~~~~vvVIGgG 175 (446)
T TIGR01424 151 EL-GITSNEAFHLPTLPKSILILGGG 175 (446)
T ss_pred cc-eechHHhhcccccCCeEEEECCc
Confidence 53 3333 222 2356778888654
No 7
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.91 E-value=2.2e-23 Score=192.74 Aligned_cols=168 Identities=41% Similarity=0.724 Sum_probs=140.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK 194 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (296)
.|||+||||||+|++||.++++.|++|+|+| + + .+||+|.+++|+|++.+++.............+|++..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE--~-~------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~ 72 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVE--A-K------KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQN 72 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEec--c-c------ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccC
Confidence 4899999999999999999999999999999 4 3 78999999999999999998888887777777887654
Q ss_pred c--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCC-CCCCC
Q psy7665 195 K--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP-DIPGA 271 (296)
Q Consensus 195 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p-~i~G~ 271 (296)
. ..+|..+..+.+.+.+.+...+...++..+|+++.++..+.+++.|.+++ ..+.||+||+|||++|+.| ++||.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~--~~~~~d~vIiAtGs~p~~p~~i~g~ 150 (450)
T TIGR01421 73 LENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNG--RDYTAPHILIATGGKPSFPENIPGA 150 (450)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECC--EEEEeCEEEEecCCCCCCCCCCCCC
Confidence 2 57899999988888888877778888889999999888777777787776 5699999999999999999 89997
Q ss_pred ccceeec--ccCC-CCCCcEEEeecc
Q psy7665 272 RLLRTLS--LLSG-VDPPTLIFLEHI 294 (296)
Q Consensus 272 ~~~~~~s--~~~~-~~~~~~~~~~~~ 294 (296)
+. ..++ ++.. ..|++++|++++
T Consensus 151 ~~-~~~~~~~~~~~~~~~~vvIIGgG 175 (450)
T TIGR01421 151 EL-GTDSDGFFALEELPKRVVIVGAG 175 (450)
T ss_pred ce-eEcHHHhhCccccCCeEEEECCC
Confidence 53 2333 3332 356778888764
No 8
>KOG0405|consensus
Probab=99.91 E-value=6.6e-24 Score=180.41 Aligned_cols=171 Identities=40% Similarity=0.738 Sum_probs=149.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+||.+|||||..|+.+|+++++.|.+|.|+| .+- .+||+|.+.||+|++.+++.+.+.........|||+.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E--~~f------~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~ 90 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCE--LPF------GLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPI 90 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEe--cCC------CcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcc
Confidence 57999999999999999999999999999999 554 7899999999999999999999999999999999998
Q ss_pred cc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665 194 KK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDI 268 (296)
Q Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i 268 (296)
+. .++|..+.+..+.+..++.-.+...+.+.+|+++.+++.+.++..+.+ ++....|.++++++|+|++|..|+|
T Consensus 91 ~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnI 170 (478)
T KOG0405|consen 91 NEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNI 170 (478)
T ss_pred ccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCC
Confidence 65 899999999999999999988888899999999999999988887776 4544568999999999999999999
Q ss_pred CCCccceeec--ccC-CCCCCcEEEeec
Q psy7665 269 PGARLLRTLS--LLS-GVDPPTLIFLEH 293 (296)
Q Consensus 269 ~G~~~~~~~s--~~~-~~~~~~~~~~~~ 293 (296)
||. ++-++| +|+ +..|++.++++.
T Consensus 171 pG~-E~gidSDgff~Lee~Pkr~vvvGa 197 (478)
T KOG0405|consen 171 PGA-ELGIDSDGFFDLEEQPKRVVVVGA 197 (478)
T ss_pred Cch-hhccccccccchhhcCceEEEEcc
Confidence 998 445555 455 455666666654
No 9
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.91 E-value=3.7e-23 Score=192.24 Aligned_cols=173 Identities=26% Similarity=0.371 Sum_probs=141.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..|||+||||||+|+.+|.+|++.|++|+|+| +.+ .+||+|.+.+|+|++.+.+.............+|+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie--~~~------~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~ 74 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVE--RYS------TLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVF 74 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEe--cCC------cccccccCCCcccHHHHHHHHHHHHHHhhhhhcCccc
Confidence 35899999999999999999999999999999 555 7899999999999999998888777777777788866
Q ss_pred cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCC-CCC
Q psy7665 194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTY-PDI 268 (296)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~-p~i 268 (296)
.. .++|..+..+.+...+.+...+...++..+|+++.+++.+.+.+.+.+ +|+..++.||+||+|||++|.. |.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~ 154 (471)
T PRK06467 75 GEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFI 154 (471)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCC
Confidence 54 789999999888888887777777888899999999888888888777 2333579999999999999974 556
Q ss_pred CCCccceeec--ccCC-CCCCcEEEeecc
Q psy7665 269 PGARLLRTLS--LLSG-VDPPTLIFLEHI 294 (296)
Q Consensus 269 ~G~~~~~~~s--~~~~-~~~~~~~~~~~~ 294 (296)
++..+.++++ .+.. ..|++++|++++
T Consensus 155 ~~~~~~v~~~~~~~~~~~~~~~vvIiGgG 183 (471)
T PRK06467 155 PHDDPRIWDSTDALELKEVPKRLLVMGGG 183 (471)
T ss_pred CCCCCcEEChHHhhccccCCCeEEEECCC
Confidence 7765556665 2333 356778888764
No 10
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.91 E-value=2.3e-23 Score=193.60 Aligned_cols=180 Identities=30% Similarity=0.501 Sum_probs=142.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhC-CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM-NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH 192 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 192 (296)
..|||+||||||+|..||..++++ |.+|+|+|+.+....+++..+||+|.|+||+|++.+++.+...........+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 358999999999999999999997 9999999932111111122799999999999999999999888888777778876
Q ss_pred cc--c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEEeCCEEEEcc-------eeEEEEeCeEEEcCCC
Q psy7665 193 MK--K-SFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFVDKHRVKFAG-------EERTVSAQNFIIAVGG 261 (296)
Q Consensus 193 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~v~v~g-------~~~~~~a~~vV~AtG~ 261 (296)
.. . .++|..+.++.+.....+...+...+++. +++++.+++.+.++++|.++. ....+.||+||+|||+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs 161 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS 161 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence 43 2 68999999999998888887777778774 999999999998888888821 1357999999999999
Q ss_pred CCCCCCCCCCccceeec--ccCC-CCCCcEEEeecc
Q psy7665 262 RPTYPDIPGARLLRTLS--LLSG-VDPPTLIFLEHI 294 (296)
Q Consensus 262 ~p~~p~i~G~~~~~~~s--~~~~-~~~~~~~~~~~~ 294 (296)
+|..|++||.+. +.++ .+.. ..|++++||+++
T Consensus 162 ~p~~p~i~G~~~-~~~~~~~~~~~~~~~~vvIIGgG 196 (486)
T TIGR01423 162 WPQMLGIPGIEH-CISSNEAFYLDEPPRRVLTVGGG 196 (486)
T ss_pred CCCCCCCCChhh-eechhhhhccccCCCeEEEECCC
Confidence 999999999754 3443 2222 456778888654
No 11
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.91 E-value=3.5e-23 Score=193.46 Aligned_cols=180 Identities=48% Similarity=0.848 Sum_probs=142.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhh-cccccCccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEAT-TSDNFGFHM 193 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~g~~~ 193 (296)
.|||+||||||+|+.||.+++++|++|+|+|+.++...+.++.+||+|.+.+|+|++.+.+......... ....||+..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999999322223445556999999999999999888777666554 345677764
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE-c-ceeEEEEeCeEEEcCCCCCCCCC-CCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF-A-GEERTVSAQNFIIAVGGRPTYPD-IPG 270 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v-~-g~~~~~~a~~vV~AtG~~p~~p~-i~G 270 (296)
....+|..+.++.+...+.+...+...++..+|+++.+++.+.+.+.|.+ + ++...+.||+||+|||++|..|. +||
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G 164 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPG 164 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCC
Confidence 33689999999999988888777777777789999999888888888887 2 33357999999999999999885 999
Q ss_pred Cccceeec--ccC-CCCCCcEEEeecc
Q psy7665 271 ARLLRTLS--LLS-GVDPPTLIFLEHI 294 (296)
Q Consensus 271 ~~~~~~~s--~~~-~~~~~~~~~~~~~ 294 (296)
.++...++ .+. ...|++++|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~vvIIGgG 191 (499)
T PTZ00052 165 AKEYSITSDDIFSLSKDPGKTLIVGAS 191 (499)
T ss_pred ccceeecHHHHhhhhcCCCeEEEECCC
Confidence 87666665 333 2356778888764
No 12
>PRK06370 mercuric reductase; Validated
Probab=99.91 E-value=4.3e-23 Score=191.75 Aligned_cols=170 Identities=29% Similarity=0.452 Sum_probs=141.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..|||+||||||+|++||.+|++.|++|+|+| + . .+||+|.+.+|+|++.+++.............+|++.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie--~-~------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 74 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIE--R-G------LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSV 74 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEe--c-C------ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 45899999999999999999999999999999 3 2 7899999999999999999988888887778888875
Q ss_pred c--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665 194 K--KSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270 (296)
Q Consensus 194 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G 270 (296)
. ..++|..+.++.+...+.+...+...+++. +++++.++..+.+.+.+.+++ ..+.+|+||+|||++|+.|++||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~--~~~~~d~lViATGs~p~~p~i~G 152 (463)
T PRK06370 75 GGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGG--ETLRAKRIFINTGARAAIPPIPG 152 (463)
T ss_pred CccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECc--EEEEeCEEEEcCCCCCCCCCCCC
Confidence 3 278999999988888877666677778877 999998888777778888866 57899999999999999999999
Q ss_pred Ccc-ceeec--ccC-CCCCCcEEEeecc
Q psy7665 271 ARL-LRTLS--LLS-GVDPPTLIFLEHI 294 (296)
Q Consensus 271 ~~~-~~~~s--~~~-~~~~~~~~~~~~~ 294 (296)
.+. .++++ .+. ...|++++|++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~vvVIGgG 180 (463)
T PRK06370 153 LDEVGYLTNETIFSLDELPEHLVIIGGG 180 (463)
T ss_pred CCcCceEcchHhhCccccCCEEEEECCC
Confidence 864 34444 232 2457788888754
No 13
>PRK06116 glutathione reductase; Validated
Probab=99.91 E-value=7e-23 Score=189.75 Aligned_cols=168 Identities=42% Similarity=0.756 Sum_probs=136.7
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhc-ccccCccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATT-SDNFGFHM 193 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~g~~~ 193 (296)
.|||+||||||+|++||.+|+++|++|+|+| + . .+||+|.+.+|+|++.+.+.....+.... ...+|+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE--~-~------~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~ 74 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIE--A-K------RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDV 74 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEe--c-c------chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCC
Confidence 5899999999999999999999999999999 3 2 78999999999999999988877666655 44566654
Q ss_pred cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCCCc
Q psy7665 194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAR 272 (296)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G~~ 272 (296)
.. .++|..+.++.+...+.+...+...+.+.+|+++.+++.+.+.+.|++++ ..+.||+||+|||++|+.|++||.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g--~~~~~d~lViATGs~p~~p~i~g~~ 152 (450)
T PRK06116 75 TENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNG--ERYTADHILIATGGRPSIPDIPGAE 152 (450)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECC--EEEEeCEEEEecCCCCCCCCCCCcc
Confidence 33 67899998888887777777777778888999999888777788888865 5799999999999999999999975
Q ss_pred cceeec--ccC-CCCCCcEEEeecc
Q psy7665 273 LLRTLS--LLS-GVDPPTLIFLEHI 294 (296)
Q Consensus 273 ~~~~~s--~~~-~~~~~~~~~~~~~ 294 (296)
. +.++ .+. ...+++++|++++
T Consensus 153 ~-~~~~~~~~~~~~~~~~vvViGgG 176 (450)
T PRK06116 153 Y-GITSDGFFALEELPKRVAVVGAG 176 (450)
T ss_pred e-eEchhHhhCccccCCeEEEECCC
Confidence 3 3443 232 3456778888754
No 14
>PLN02507 glutathione reductase
Probab=99.90 E-value=9.4e-23 Score=190.43 Aligned_cols=181 Identities=32% Similarity=0.599 Sum_probs=142.6
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccC-CCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVT-PSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF 191 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~-~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 191 (296)
..+|||+||||||+|+.+|.++++.|++|+|+|+.. ..+-+.+..+||+|.+.||+|++.+.+.+...........+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 357899999999999999999999999999999311 1111222379999999999999999998888777777777887
Q ss_pred cccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCC
Q psy7665 192 HMKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP 266 (296)
Q Consensus 192 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p 266 (296)
.... .++|..+.++.....+.+...+...+...+|+++.+++.+.+.+.+.+ +|+...+.||+||+|||++|..|
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p 182 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRP 182 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCC
Confidence 6532 689999998888888888777778888899999999888888877776 44345789999999999999999
Q ss_pred CCCCCccceeec--ccC-CCCCCcEEEeecc
Q psy7665 267 DIPGARLLRTLS--LLS-GVDPPTLIFLEHI 294 (296)
Q Consensus 267 ~i~G~~~~~~~s--~~~-~~~~~~~~~~~~~ 294 (296)
++||.+. ..++ .+. ...+++++|++++
T Consensus 183 ~ipG~~~-~~~~~~~~~l~~~~k~vvVIGgG 212 (499)
T PLN02507 183 NIPGKEL-AITSDEALSLEELPKRAVVLGGG 212 (499)
T ss_pred CCCCccc-eechHHhhhhhhcCCeEEEECCc
Confidence 9999743 3333 222 2346778888754
No 15
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.90 E-value=4.2e-22 Score=185.19 Aligned_cols=169 Identities=33% Similarity=0.558 Sum_probs=133.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK 195 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (296)
|||+||||||+|+.+|.+++++|++|+|+| +. .+||+|.+.+|+|++.+.+.....+..... .+|+....
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie--~~-------~~GG~c~n~gciPsk~l~~~~~~~~~~~~~-~~g~~~~~ 70 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVE--RG-------PLGGTCVNVGCVPSKMLLRAAEVAHYARKP-PFGGLAAT 70 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEe--CC-------cccCCeeeecEEccHHHHHHHHHHHHhhcc-CcccccCC
Confidence 699999999999999999999999999999 32 689999999999999999888777766553 36664433
Q ss_pred -cCCHHHHHHHHHHHHHHHHH-HHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCCCcc
Q psy7665 196 -SFTWKTLVDNVQKYIRNLNN-NYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL 273 (296)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G~~~ 273 (296)
.++|..+..+.+.....+.. .+...+++.+++++.+++.+.+.+.+.++++...+.+|+||+|||++|..|++||.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~ 150 (463)
T TIGR02053 71 VAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKE 150 (463)
T ss_pred CccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCccc
Confidence 77898888888777776654 2556678889999998888877888888432346889999999999999999999864
Q ss_pred c-eeec--ccC-CCCCCcEEEeecc
Q psy7665 274 L-RTLS--LLS-GVDPPTLIFLEHI 294 (296)
Q Consensus 274 ~-~~~s--~~~-~~~~~~~~~~~~~ 294 (296)
. ++++ .+. ...|++++|++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~vvIIGgG 175 (463)
T TIGR02053 151 AGYLTSEEALALDRIPESLAVIGGG 175 (463)
T ss_pred CceECchhhhCcccCCCeEEEECCC
Confidence 3 4444 222 2346778888654
No 16
>PRK14727 putative mercuric reductase; Provisional
Probab=99.89 E-value=6.5e-22 Score=184.38 Aligned_cols=173 Identities=29% Similarity=0.480 Sum_probs=135.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..|||+||||||+|+.+|..|++.|.+|+++| +.+ .+||+|.+++|+|++.+++.....+......++|++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie--~~~------~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~ 86 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIE--GAD------VIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEA 86 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEE--ccC------cceeEeccccccccHHHHHHHHHHHHHhhccccCccc
Confidence 56899999999999999999999999999999 555 7899999999999999999888877776666677764
Q ss_pred cc-cCCHHHHHHHHHHHHHHHHH-HHHHHHHHC-CcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665 194 KK-SFTWKTLVDNVQKYIRNLNN-NYEKELEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPD 267 (296)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~ 267 (296)
.. .++|..+..+.+.....+.. .+...++.. +++++.+++.+.+.+.+.+ +++..++.||+||+|||++|..|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~ 166 (479)
T PRK14727 87 VAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPP 166 (479)
T ss_pred CCCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCC
Confidence 33 67788887777766665543 244555554 8999999998888887776 343357999999999999999999
Q ss_pred CCCCccc-eeec---ccCCCCCCcEEEeecc
Q psy7665 268 IPGARLL-RTLS---LLSGVDPPTLIFLEHI 294 (296)
Q Consensus 268 i~G~~~~-~~~s---~~~~~~~~~~~~~~~~ 294 (296)
+||.++. .+++ +.....|++++||+.+
T Consensus 167 i~G~~~~~~~~~~~~l~~~~~~k~vvVIGgG 197 (479)
T PRK14727 167 IPGLMDTPYWTSTEALFSDELPASLTVIGSS 197 (479)
T ss_pred CCCcCccceecchHHhccccCCCeEEEECCC
Confidence 9997532 2333 2333457788888764
No 17
>PRK07846 mycothione reductase; Reviewed
Probab=99.89 E-value=3.1e-22 Score=185.00 Aligned_cols=167 Identities=26% Similarity=0.498 Sum_probs=134.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK 194 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (296)
+||++||||||+|..+|.. ..|.+|+|+| + + .+||+|.|+||+|++.+.+.+...........+|+...
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie--~-~------~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 69 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVE--K-G------TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE 69 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEe--C-C------CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC
Confidence 3799999999999999866 4699999999 3 2 78999999999999999999998888887778888644
Q ss_pred c-cCCHHHHHHHHHHHHHHHHHH-HHHH-HHHCCcEEEcceEEEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665 195 K-SFTWKTLVDNVQKYIRNLNNN-YEKE-LEKNKIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG 270 (296)
Q Consensus 195 ~-~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G 270 (296)
. .++|..+.++.....+++... .... ++..+++++.+++.+.++++|++ ++ ..+.||+||+|||++|+.|++||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g--~~~~~d~lViATGs~p~~p~i~g 147 (451)
T PRK07846 70 LDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDG--EEITADQVVIAAGSRPVIPPVIA 147 (451)
T ss_pred CCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCC--CEEEeCEEEEcCCCCCCCCCCCC
Confidence 3 789999999888877776442 3344 67789999999998888899998 45 47899999999999999999999
Q ss_pred Cccc-eeec--ccC-CCCCCcEEEeecc
Q psy7665 271 ARLL-RTLS--LLS-GVDPPTLIFLEHI 294 (296)
Q Consensus 271 ~~~~-~~~s--~~~-~~~~~~~~~~~~~ 294 (296)
.+.. +.++ .+. ...|++++|++.+
T Consensus 148 ~~~~~~~~~~~~~~l~~~~~~vvIIGgG 175 (451)
T PRK07846 148 DSGVRYHTSDTIMRLPELPESLVIVGGG 175 (451)
T ss_pred cCCccEEchHHHhhhhhcCCeEEEECCC
Confidence 6533 3333 222 2357788888754
No 18
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.89 E-value=1.3e-21 Score=182.31 Aligned_cols=172 Identities=29% Similarity=0.487 Sum_probs=134.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..|||+||||||+|+++|.+|++.|++|+|+| + . .+||+|.+.+|+|++.+...............+|+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie--~-~------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 73 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVE--K-G------KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISV 73 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEE--c-c------CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccC
Confidence 46899999999999999999999999999999 3 2 7899999999999999999888777766667777764
Q ss_pred cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCC-------EEEE---cceeEEEEeCeEEEcCCCC
Q psy7665 194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKH-------RVKF---AGEERTVSAQNFIIAVGGR 262 (296)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~v~v---~g~~~~~~a~~vV~AtG~~ 262 (296)
.. .++|..+..+.+...+.+...+...+++.+++++.+++.+.+.+ .+.+ +|+...+.||+||+|||++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~ 153 (472)
T PRK05976 74 SGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSR 153 (472)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCC
Confidence 43 67899998888888777766677778888999999988887766 6666 3333679999999999999
Q ss_pred CCCCC-CCCCccceeecc--cC-CCCCCcEEEeecc
Q psy7665 263 PTYPD-IPGARLLRTLSL--LS-GVDPPTLIFLEHI 294 (296)
Q Consensus 263 p~~p~-i~G~~~~~~~s~--~~-~~~~~~~~~~~~~ 294 (296)
|..|+ ++....+++++. +. ...|+++++++++
T Consensus 154 p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG 189 (472)
T PRK05976 154 PVELPGLPFDGEYVISSDEALSLETLPKSLVIVGGG 189 (472)
T ss_pred CCCCCCCCCCCceEEcchHhhCccccCCEEEEECCC
Confidence 86543 332223455542 22 2346788888764
No 19
>PRK14694 putative mercuric reductase; Provisional
Probab=99.89 E-value=8.5e-22 Score=183.21 Aligned_cols=173 Identities=29% Similarity=0.500 Sum_probs=131.7
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhccc-ccCc
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSD-NFGF 191 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~g~ 191 (296)
...|||+||||||+|+.+|.+|++.|++|+||| + . .+||+|.+.||+|++.+.+............ .+|+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie--~-~------~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~ 74 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIE--R-G------TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGL 74 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEE--c-c------ccccceecCCccccHHHHHHHHHHHHHhhccccCCc
Confidence 357899999999999999999999999999999 3 2 7899999999999999998888777665544 3566
Q ss_pred cccc-cCCHHHHHHHHHHHHHHHHHH-HHHHHHHC-CcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCC
Q psy7665 192 HMKK-SFTWKTLVDNVQKYIRNLNNN-YEKELEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTY 265 (296)
Q Consensus 192 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~ 265 (296)
+... .++|..+..+.+.....+... ....+... +++++.+++.+++...+.+ +++..++.||+||+|||++|..
T Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~ 154 (468)
T PRK14694 75 SAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAE 154 (468)
T ss_pred ccCCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCC
Confidence 5332 678999988888776665443 33445443 8999999887776655554 4434579999999999999999
Q ss_pred CCCCCCccc-eeecc--cC-CCCCCcEEEeecc
Q psy7665 266 PDIPGARLL-RTLSL--LS-GVDPPTLIFLEHI 294 (296)
Q Consensus 266 p~i~G~~~~-~~~s~--~~-~~~~~~~~~~~~~ 294 (296)
|++||.++. ..++. +. ...+++++|++.+
T Consensus 155 p~i~G~~~~~~~~~~~~~~l~~~~~~vvViG~G 187 (468)
T PRK14694 155 PPVPGLAETPYLTSTSALELDHIPERLLVIGAS 187 (468)
T ss_pred CCCCCCCCCceEcchhhhchhcCCCeEEEECCC
Confidence 999998643 33432 22 2346778888754
No 20
>KOG1335|consensus
Probab=99.89 E-value=6.8e-22 Score=170.14 Aligned_cols=172 Identities=34% Similarity=0.539 Sum_probs=143.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhc--ccccCc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATT--SDNFGF 191 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~g~ 191 (296)
.+|||+|||+||.|..||.+++++|++++.+| ++. .+||+|.+.||+|++.+...+++.+.... +...|+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvE--kr~------~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi 109 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVE--KRG------TLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGI 109 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEe--ccC------ccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCc
Confidence 46899999999999999999999999999999 666 89999999999999999988887776554 556677
Q ss_pred cccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCC-CCCC
Q psy7665 192 HMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGR-PTYP 266 (296)
Q Consensus 192 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~-p~~p 266 (296)
.... .++.+.+.......+..+...+...|++++|+.+.+...+.+++.|.+ +++...+.++++|+|||+. +..|
T Consensus 110 ~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~P 189 (506)
T KOG1335|consen 110 DVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFP 189 (506)
T ss_pred cccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCC
Confidence 7665 889999999999999999999999999999999999999999999988 6667899999999999983 3334
Q ss_pred CCCCCccceeecc--cCC-CCCCcEEEeec
Q psy7665 267 DIPGARLLRTLSL--LSG-VDPPTLIFLEH 293 (296)
Q Consensus 267 ~i~G~~~~~~~s~--~~~-~~~~~~~~~~~ 293 (296)
.|.=.++-+++|. +++ +.|+++.+++.
T Consensus 190 GI~IDekkIVSStgALsL~~vPk~~~viG~ 219 (506)
T KOG1335|consen 190 GITIDEKKIVSSTGALSLKEVPKKLTVIGA 219 (506)
T ss_pred CeEecCceEEecCCccchhhCcceEEEEcC
Confidence 4433447788873 444 45566777654
No 21
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.89 E-value=1.3e-21 Score=186.39 Aligned_cols=172 Identities=28% Similarity=0.374 Sum_probs=138.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcc---cccC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTS---DNFG 190 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~g 190 (296)
.+|||+|||+||+|..+|..+++.|.+|+|||+. .. .+||+|.++||+|++.+++.+......... ..||
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~-~~------~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~G 187 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD-DD------SIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYG 187 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CC------ccccceeEeCCcchHHHHHHHHHHHHHHhccccccCC
Confidence 4789999999999999999999999999999921 22 689999999999999999998887777654 3567
Q ss_pred ccc------------------cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------cEEEcceEEEEeCCEEEE-
Q psy7665 191 FHM------------------KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNK-------IDYFNAKAVFVDKHRVKF- 243 (296)
Q Consensus 191 ~~~------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~v~v- 243 (296)
+.. .. .++|..+.++.+...+.+...+...+++.+ ++++.+.+.+.++++|.+
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~ 267 (659)
T PTZ00153 188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE 267 (659)
T ss_pred eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence 651 12 679999999999999988877777787765 889999988888888887
Q ss_pred -cceeEEEEeCeEEEcCCCCCCCCCCCCCc-cceeecc--cCC-CCCCcEEEeecc
Q psy7665 244 -AGEERTVSAQNFIIAVGGRPTYPDIPGAR-LLRTLSL--LSG-VDPPTLIFLEHI 294 (296)
Q Consensus 244 -~g~~~~~~a~~vV~AtG~~p~~p~i~G~~-~~~~~s~--~~~-~~~~~~~~~~~~ 294 (296)
++ .++.+|+||+|||++|..|++++.+ ..++++. +.+ ..|++++||+++
T Consensus 268 ~~g--~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG 321 (659)
T PTZ00153 268 KSG--KEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMG 321 (659)
T ss_pred cCC--EEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCC
Confidence 44 5799999999999999999876654 3366652 222 346778888764
No 22
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.88 E-value=2.3e-21 Score=180.05 Aligned_cols=170 Identities=32% Similarity=0.518 Sum_probs=131.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhc--ccccCcc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATT--SDNFGFH 192 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~g~~ 192 (296)
.|||+||||||+|++||.+++++|++|+|+| +.+ .+||+|.+++|+|++.+.......+.... ...+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE--~~~------~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~ 74 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVE--GRS------TLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIE 74 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEe--cCC------ceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcc
Confidence 4899999999999999999999999999999 545 79999999999999999988776654442 4556765
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665 193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP 269 (296)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i~ 269 (296)
....++|..+..+.......+...+...++..+|+++.++..+.+++++.+ +++...+.||+||+|||++|. .+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~--~ip 152 (466)
T PRK06115 75 VKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLP 152 (466)
T ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC--CCC
Confidence 433678888888888777777666777778889999998888777777766 343357999999999999884 355
Q ss_pred CCc---cceeecc--cC-CCCCCcEEEeecc
Q psy7665 270 GAR---LLRTLSL--LS-GVDPPTLIFLEHI 294 (296)
Q Consensus 270 G~~---~~~~~s~--~~-~~~~~~~~~~~~~ 294 (296)
|.+ .+++++. +. ...|++++|++++
T Consensus 153 g~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG 183 (466)
T PRK06115 153 GVTIDNQRIIDSTGALSLPEVPKHLVVIGAG 183 (466)
T ss_pred CCCCCCCeEECHHHHhCCccCCCeEEEECCC
Confidence 543 3345542 22 2457788888764
No 23
>PRK13748 putative mercuric reductase; Provisional
Probab=99.88 E-value=1.6e-21 Score=185.53 Aligned_cols=172 Identities=30% Similarity=0.473 Sum_probs=132.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccc-cCcc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDN-FGFH 192 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~g~~ 192 (296)
..|||+||||||+|+.+|.+|++.|++|+||| +. .+||+|.+++|+|++.+.+............+ +|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie--~~-------~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~ 167 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIE--RG-------TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIA 167 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEe--cC-------cceeeccccCccccHHHHHHHHHHHHHhcccccCCcc
Confidence 46899999999999999999999999999999 32 78999999999999999988887776655443 4765
Q ss_pred ccc-cCCHHHHHHHHHHHHHHHHHH-HHHHHHHC-CcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCC
Q psy7665 193 MKK-SFTWKTLVDNVQKYIRNLNNN-YEKELEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP 266 (296)
Q Consensus 193 ~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p 266 (296)
... ..+|..+.++.+.....+... +...+... +|+++.+++.+.+.+.+.+ +++...+.||+||+|||++|..|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p 247 (561)
T PRK13748 168 ATVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVP 247 (561)
T ss_pred CCCCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 333 678888888777766655432 34445555 8999999888887777766 34345799999999999999999
Q ss_pred CCCCCcc-ceeec---ccCCCCCCcEEEeecc
Q psy7665 267 DIPGARL-LRTLS---LLSGVDPPTLIFLEHI 294 (296)
Q Consensus 267 ~i~G~~~-~~~~s---~~~~~~~~~~~~~~~~ 294 (296)
++||.+. ..+++ +.....|++++||+++
T Consensus 248 ~i~g~~~~~~~~~~~~~~~~~~~~~vvViGgG 279 (561)
T PRK13748 248 PIPGLKETPYWTSTEALVSDTIPERLAVIGSS 279 (561)
T ss_pred CCCCCCccceEccHHHhhcccCCCeEEEECCC
Confidence 9999864 23333 2223457788888764
No 24
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.88 E-value=2.4e-21 Score=179.74 Aligned_cols=169 Identities=33% Similarity=0.531 Sum_probs=137.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc--
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK-- 194 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~-- 194 (296)
+|+||||||+|+.+|.++++.|++|+|+| +. .+||+|.|.+|+|++.+.+.............+|+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie--~~-------~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 72 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLID--EA-------DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNG 72 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEE--CC-------cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCC
Confidence 79999999999999999999999999999 32 68999999999999999998888887777777887643
Q ss_pred c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCCCCC
Q psy7665 195 K-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA 271 (296)
Q Consensus 195 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i~G~ 271 (296)
. ..+|..+..+.+...+.+.......++..+++++.+++.+.+.+.+.+ +++..++.||+||+|||++|+.|++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~ 152 (458)
T PRK06912 73 SISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPF 152 (458)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCC
Confidence 2 678999988888888877666777788889999999988888888877 3333579999999999999988888876
Q ss_pred c-cceeec--ccC-CCCCCcEEEeecc
Q psy7665 272 R-LLRTLS--LLS-GVDPPTLIFLEHI 294 (296)
Q Consensus 272 ~-~~~~~s--~~~-~~~~~~~~~~~~~ 294 (296)
+ ..++++ .+. ...|++++|++++
T Consensus 153 ~~~~v~~~~~~~~~~~~~~~vvIIGgG 179 (458)
T PRK06912 153 DGKWIINSKHAMSLPSIPSSLLIVGGG 179 (458)
T ss_pred CCCeEEcchHHhCccccCCcEEEECCC
Confidence 5 445555 233 3346778888764
No 25
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.88 E-value=4.5e-21 Score=178.26 Aligned_cols=173 Identities=31% Similarity=0.470 Sum_probs=131.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhccccc-Ccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNF-GFH 192 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-g~~ 192 (296)
..|||+||||||+|+.+|.+|++.|++|+|+| +.+ .+||+|.+.+|+|++.+...............+ .+.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE--~~~------~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~ 75 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE--RYR------NVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYR 75 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEe--ccc------cccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccC
Confidence 45899999999999999999999999999999 555 789999999999999887765544433332222 222
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665 193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP 269 (296)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i~ 269 (296)
....+++..+..+.+...+.+...+...+++.+++++.++..+.+.+.+++ +++...+.||+||+|||++|..|+++
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~ 155 (461)
T PRK05249 76 VKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDV 155 (461)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCC
Confidence 222678888888888877777667777788889999998887777777766 34335799999999999999999877
Q ss_pred CCc-cceeec--cc-CCCCCCcEEEeecc
Q psy7665 270 GAR-LLRTLS--LL-SGVDPPTLIFLEHI 294 (296)
Q Consensus 270 G~~-~~~~~s--~~-~~~~~~~~~~~~~~ 294 (296)
+.+ ..++++ ++ ....|++++|++.+
T Consensus 156 ~~~~~~v~~~~~~~~~~~~~~~v~IiGgG 184 (461)
T PRK05249 156 DFDHPRIYDSDSILSLDHLPRSLIIYGAG 184 (461)
T ss_pred CCCCCeEEcHHHhhchhhcCCeEEEECCC
Confidence 754 334444 22 23457788888764
No 26
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.87 E-value=8.3e-21 Score=176.50 Aligned_cols=170 Identities=35% Similarity=0.557 Sum_probs=134.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..|||+||||||+|++||..|++.|++|+|+| +. .+||+|.+.+|+|++.+.+.....+.......+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE--~~-------~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~ 73 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVE--KE-------KLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKA 73 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEe--cc-------ccccceeecccCCcHHHHHhhhHHHHHHHHHhcCccc
Confidence 46899999999999999999999999999999 32 6899999999999999998888877777777777764
Q ss_pred cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEc--ceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665 194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYPDIPG 270 (296)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~--g~~~~~~a~~vV~AtG~~p~~p~i~G 270 (296)
.. .++|..+.++.+...+.+...+...+++.+++++.+++.+.+.+.+++. .+...+.||+||+|||++|..| ||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~--pg 151 (462)
T PRK06416 74 ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL--PG 151 (462)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC--CC
Confidence 33 6789999999888888877777777888899999988877777777772 2126799999999999998764 44
Q ss_pred Cc---cceeecc--cC-CCCCCcEEEeecc
Q psy7665 271 AR---LLRTLSL--LS-GVDPPTLIFLEHI 294 (296)
Q Consensus 271 ~~---~~~~~s~--~~-~~~~~~~~~~~~~ 294 (296)
.+ ..+.++. +. ...+++++|++++
T Consensus 152 ~~~~~~~v~~~~~~~~~~~~~~~vvVvGgG 181 (462)
T PRK06416 152 IEIDGRVIWTSDEALNLDEVPKSLVVIGGG 181 (462)
T ss_pred CCCCCCeEEcchHhhCccccCCeEEEECCC
Confidence 43 2233442 22 2346778887754
No 27
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.87 E-value=1.3e-20 Score=175.15 Aligned_cols=170 Identities=34% Similarity=0.559 Sum_probs=133.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK 195 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (296)
|||+||||||+|+.+|.+|++.|++|+|+| + + .+||+|.+.+|+|++.+...............+++....
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie--~-~------~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~ 72 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVE--K-E------YLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVEN 72 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEe--c-C------CCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCC
Confidence 799999999999999999999999999999 5 5 889999999999999988877776665556667765433
Q ss_pred -cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCCC-CC
Q psy7665 196 -SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIP-GA 271 (296)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i~-G~ 271 (296)
.++|..+..+.+...+.+...+...+++.+++++.++..+.+.+.+.+ .++...+.||+||+|||++|+.|++| +.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~ 152 (461)
T TIGR01350 73 VSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDF 152 (461)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCC
Confidence 678888888887777777777777788889999998887777777777 22225799999999999999888876 43
Q ss_pred c-cceeecc--cC-CCCCCcEEEeecc
Q psy7665 272 R-LLRTLSL--LS-GVDPPTLIFLEHI 294 (296)
Q Consensus 272 ~-~~~~~s~--~~-~~~~~~~~~~~~~ 294 (296)
+ ..+.++. +. ...++++++++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~vvViGgG 179 (461)
T TIGR01350 153 DGEVVITSTGALNLKEVPESLVIIGGG 179 (461)
T ss_pred CCceEEcchHHhccccCCCeEEEECCC
Confidence 3 2344442 22 2356778887654
No 28
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.87 E-value=9.7e-21 Score=176.00 Aligned_cols=168 Identities=36% Similarity=0.538 Sum_probs=133.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..|||+||||||+|+.+|.+|++.|++|+|+| + + .+||+|.+.+|+|++.+.+.............+|+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie--~-~------~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~ 72 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIE--K-G------PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHA 72 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEe--C-C------ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35899999999999999999999999999999 4 4 7899999999999999998888777777777777765
Q ss_pred cc-cCCHHHHHHHHHHHHHHHHHHH-HHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCCC
Q psy7665 194 KK-SFTWKTLVDNVQKYIRNLNNNY-EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271 (296)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G~ 271 (296)
.. .++|..+.++.+.....+...+ ...++..+++++.++..+.+.+.+.+++ .++.+|+||+|||++ .|++||.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~--~~~~~d~lIiATGs~--~p~ipg~ 148 (460)
T PRK06292 73 DGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNG--ERIEAKNIVIATGSR--VPPIPGV 148 (460)
T ss_pred CCCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECc--EEEEeCEEEEeCCCC--CCCCCCC
Confidence 43 7889999998888887776655 4556777999998887777778887765 679999999999998 5566665
Q ss_pred c----cceeecc--cC-CCCCCcEEEeecc
Q psy7665 272 R----LLRTLSL--LS-GVDPPTLIFLEHI 294 (296)
Q Consensus 272 ~----~~~~~s~--~~-~~~~~~~~~~~~~ 294 (296)
. ..+.++. +. ...|+++++|+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG 178 (460)
T PRK06292 149 WLILGDRLLTSDDAFELDKLPKSLAVIGGG 178 (460)
T ss_pred cccCCCcEECchHHhCccccCCeEEEECCC
Confidence 2 2233432 21 2456778888764
No 29
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.86 E-value=2.8e-20 Score=173.35 Aligned_cols=179 Identities=28% Similarity=0.428 Sum_probs=134.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcc-cccCcc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTS-DNFGFH 192 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~g~~ 192 (296)
..||++||||||+|+.||.++++.|.+|+|+| +....+.+..+||+|.+.+|+|++.+............. ..+|+.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie--~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~ 80 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIE--AWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH 80 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEe--cccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence 35899999999999999999999999999999 421223334789999999999999988877776655543 566776
Q ss_pred ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe----CCEEEEc-ceeEEEEeCeEEEcCCCCCCCC
Q psy7665 193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD----KHRVKFA-GEERTVSAQNFIIAVGGRPTYP 266 (296)
Q Consensus 193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~v~v~-g~~~~~~a~~vV~AtG~~p~~p 266 (296)
... .++|..+..+.+...+.+...+...++..+|+++.+++.+.+ .+.|.++ +...++.||+||+|||++|+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~ 160 (475)
T PRK06327 81 VDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHL 160 (475)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCC
Confidence 444 678999998888877777777777788889999998887765 6778773 2225799999999999998654
Q ss_pred C-CCCCccceeecc--cC-CCCCCcEEEeecc
Q psy7665 267 D-IPGARLLRTLSL--LS-GVDPPTLIFLEHI 294 (296)
Q Consensus 267 ~-i~G~~~~~~~s~--~~-~~~~~~~~~~~~~ 294 (296)
+ ++.....++++. +. ...|++++|++.+
T Consensus 161 p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG 192 (475)
T PRK06327 161 PGVPFDNKIILDNTGALNFTEVPKKLAVIGAG 192 (475)
T ss_pred CCCCCCCceEECcHHHhcccccCCeEEEECCC
Confidence 3 443323344442 22 2356788888754
No 30
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.86 E-value=1.2e-20 Score=174.59 Aligned_cols=167 Identities=27% Similarity=0.496 Sum_probs=127.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK 194 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (296)
.|||+|||+||+|..+|.. ..|.+|+++| + + .+||+|.|+||+|++.+.+.+...+.......+|+...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie--~-~------~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 70 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVE--K-G------TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE 70 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEe--C-C------CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC
Confidence 4899999999999998644 4799999999 3 2 78999999999999999999998888888888888644
Q ss_pred c-cCCHHHHHHHHHH-HHHHHHHH-HHHHH--HHCCcEEEcceEEEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665 195 K-SFTWKTLVDNVQK-YIRNLNNN-YEKEL--EKNKIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDI 268 (296)
Q Consensus 195 ~-~~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i 268 (296)
. .++|..+..+... ..+.+... ....+ ++.+++++.++..+.+.+.|.+ ++ .++.||+||+|||++|..|++
T Consensus 71 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g--~~~~~d~lIiATGs~p~~p~~ 148 (452)
T TIGR03452 71 IDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDG--EEITGDQIVIAAGSRPYIPPA 148 (452)
T ss_pred CCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCC--cEEEeCEEEEEECCCCCCCCC
Confidence 3 6799999988766 44443221 12222 3479999999998888889988 55 468999999999999998875
Q ss_pred CCCc-cceeec--ccCC-CCCCcEEEeecc
Q psy7665 269 PGAR-LLRTLS--LLSG-VDPPTLIFLEHI 294 (296)
Q Consensus 269 ~G~~-~~~~~s--~~~~-~~~~~~~~~~~~ 294 (296)
++.+ ..+.++ .+.. ..|+++++++.+
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG 178 (452)
T TIGR03452 149 IADSGVRYHTNEDIMRLPELPESLVIVGGG 178 (452)
T ss_pred CCCCCCEEEcHHHHHhhhhcCCcEEEECCC
Confidence 4432 223443 2332 346788888754
No 31
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.86 E-value=2.5e-20 Score=172.13 Aligned_cols=157 Identities=29% Similarity=0.420 Sum_probs=119.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK 194 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (296)
.|||+||||||+|++||.+|++.|++|+|+| +.+ ..+||+|.+.+|+|++.+......
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE--~~~-----~~~GG~c~~~gciP~k~~~~~~~~--------------- 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVE--ESK-----AMYGGTCINIGCIPTKTLLVAAEK--------------- 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEe--cCC-----cccceeeecCccccchHhhhhhhc---------------
Confidence 5899999999999999999999999999999 432 026999999999999887765431
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE-c-ceeEEEEeCeEEEcCCCCCCCCCCCCCc
Q psy7665 195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF-A-GEERTVSAQNFIIAVGGRPTYPDIPGAR 272 (296)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v-~-g~~~~~~a~~vV~AtG~~p~~p~i~G~~ 272 (296)
..+|..+..+.+.....+.......+.+.+|+++.++..+.+.+.+.+ . ++...+.+|+||+|||++|+.|++||.+
T Consensus 61 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~ 139 (438)
T PRK07251 61 -NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLA 139 (438)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcC
Confidence 235666666665555555554556677889999998887777788877 3 2235799999999999999999999974
Q ss_pred --cceeec--ccC-CCCCCcEEEeecc
Q psy7665 273 --LLRTLS--LLS-GVDPPTLIFLEHI 294 (296)
Q Consensus 273 --~~~~~s--~~~-~~~~~~~~~~~~~ 294 (296)
..++++ ++. ...|++++||+++
T Consensus 140 ~~~~v~~~~~~~~~~~~~~~vvIIGgG 166 (438)
T PRK07251 140 DSKHVYDSTGIQSLETLPERLGIIGGG 166 (438)
T ss_pred CCCcEEchHHHhcchhcCCeEEEECCC
Confidence 335554 222 2457788888764
No 32
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.86 E-value=4.1e-20 Score=171.74 Aligned_cols=169 Identities=24% Similarity=0.372 Sum_probs=135.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc--
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK-- 194 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~-- 194 (296)
||+|||||++|+.+|..++++|.+|+++| +. .+||+|.+.+|+|++.+.+.+...+.......+|+...
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e--~~-------~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~ 73 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIE--RD-------GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDD 73 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEE--cc-------CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccC
Confidence 89999999999999999999999999999 32 68999999999999999998888887777778887642
Q ss_pred -c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE----EeCCEEEE---cceeEEEEeCeEEEcCCCCCCC
Q psy7665 195 -K-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF----VDKHRVKF---AGEERTVSAQNFIIAVGGRPTY 265 (296)
Q Consensus 195 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~ 265 (296)
. .++|..+.++.....+.+...+...++..+|+++.+++.+ .+.+.+.+ +|+..++.||+||+|||++|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 74 GEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRI 153 (466)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence 2 6789999999888888877777888888999999998877 55677766 3433479999999999999987
Q ss_pred CCCCCCc-cceeec--ccCC-CCCCcEEEeecc
Q psy7665 266 PDIPGAR-LLRTLS--LLSG-VDPPTLIFLEHI 294 (296)
Q Consensus 266 p~i~G~~-~~~~~s--~~~~-~~~~~~~~~~~~ 294 (296)
|++++.+ +.++++ ++.. ..|++++|++++
T Consensus 154 ~p~~~~~~~~v~~~~~~~~~~~~~~~vvVIGgG 186 (466)
T PRK07845 154 LPTAEPDGERILTWRQLYDLDELPEHLIVVGSG 186 (466)
T ss_pred CCCCCCCCceEEeehhhhcccccCCeEEEECCC
Confidence 7665543 334443 3332 346778888764
No 33
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.85 E-value=6.4e-20 Score=170.64 Aligned_cols=169 Identities=30% Similarity=0.447 Sum_probs=128.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhh-cccccCccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEAT-TSDNFGFHM 193 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~g~~~ 193 (296)
.|||+||||||+|+.||.+|++.|++|+|+| + . .+||+|.+.+|+|++.+........... ....+|+..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie--~-~------~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~ 74 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVE--K-K------YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG 74 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEe--c-C------CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 4899999999999999999999999999999 3 2 7899999999999998887665555443 344566652
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPG 270 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i~G 270 (296)
...+++..+..+.+...+.+.......++..+|+.+.++..+.+.+.+.+ +++..++.||+||+|||++|..| ||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~--pg 152 (466)
T PRK07818 75 EVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL--PG 152 (466)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC--CC
Confidence 22678888888877777666656666667779999998888877888777 34345799999999999998764 55
Q ss_pred Cc--cceeec---ccCCCCCCcEEEeecc
Q psy7665 271 AR--LLRTLS---LLSGVDPPTLIFLEHI 294 (296)
Q Consensus 271 ~~--~~~~~s---~~~~~~~~~~~~~~~~ 294 (296)
.+ ..++++ ......|++++|++++
T Consensus 153 ~~~~~~v~~~~~~~~~~~~~~~vvVIGgG 181 (466)
T PRK07818 153 TSLSENVVTYEEQILSRELPKSIVIAGAG 181 (466)
T ss_pred CCCCCcEEchHHHhccccCCCeEEEECCc
Confidence 32 234443 2234567888888764
No 34
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.83 E-value=5.5e-19 Score=163.35 Aligned_cols=157 Identities=25% Similarity=0.398 Sum_probs=110.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK 194 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (296)
.|||+||||||+|++||.+|++.|++|+|+| +.+ ..+||+|.+.+|+|++.+.+....
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie--~~~-----~~~GG~~~~~gcip~k~l~~~~~~--------------- 60 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIE--QSN-----AMYGGTCINIGCIPTKTLVHDAQQ--------------- 60 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEc--CCC-----CccceeEeeccccchHHHHHHhcc---------------
Confidence 4899999999999999999999999999999 432 047999999999999876654321
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCCCCC
Q psy7665 195 KSFTWKTLVDNVQKYIRNLNNNYEKELEK-NKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA 271 (296)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i~G~ 271 (296)
..+|.....+.+...+.+.......+.+ .+++++.+++.+.+...+.+ .++..++.+|+||+|||++|..|++||.
T Consensus 61 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~ 139 (441)
T PRK08010 61 -HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGI 139 (441)
T ss_pred -CCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCc
Confidence 2344444444444333333222233333 48999988887777777766 2322468999999999999999999997
Q ss_pred cc--ceeec--ccC-CCCCCcEEEeecc
Q psy7665 272 RL--LRTLS--LLS-GVDPPTLIFLEHI 294 (296)
Q Consensus 272 ~~--~~~~s--~~~-~~~~~~~~~~~~~ 294 (296)
++ .++++ .+. ...|++++|++++
T Consensus 140 ~~~~~v~~~~~~~~~~~~~~~v~ViGgG 167 (441)
T PRK08010 140 TTTPGVYDSTGLLNLKELPGHLGILGGG 167 (441)
T ss_pred cCCCCEEChhHhhcccccCCeEEEECCC
Confidence 53 34444 222 2456778887653
No 35
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.63 E-value=1.2e-14 Score=134.35 Aligned_cols=143 Identities=22% Similarity=0.354 Sum_probs=87.1
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCC--------chhHHHHhhhhHHH----
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCI--------PKKLFHRASLLNEE---- 182 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~--------p~~~~~~~~~~~~~---- 182 (296)
.++|+|||||++|+.||.+|++.|++|+|+| +.+ .+||.|.+.... |.....+...+...
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE--~~~------~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~ 81 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFE--REK------QVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNL 81 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEe--cCC------CCcceeecCCCcCCCccccCCCCcccchhhhhhhhccC
Confidence 4689999999999999999999999999999 677 889999764322 11111111111111
Q ss_pred ---hhcccccCccc---------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcE--EE-cceEEEE----eCCEEEE
Q psy7665 183 ---ATTSDNFGFHM---------KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID--YF-NAKAVFV----DKHRVKF 243 (296)
Q Consensus 183 ---~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~~~~----~~~~v~v 243 (296)
...+..+.+.. ...+...++.++++.+++.+ ++. +. ..++..+ ..|.|++
T Consensus 82 p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~f-----------gl~~~I~~~t~V~~V~~~~~~w~V~~ 150 (461)
T PLN02172 82 PRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREF-----------KIEEMVRFETEVVRVEPVDGKWRVQS 150 (461)
T ss_pred CHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHc-----------CCcceEEecCEEEEEeecCCeEEEEE
Confidence 11111222111 01345566666666665554 333 22 2222211 2356665
Q ss_pred -cc--eeEEEEeCeEEEcCC--CCCCCCCCCCCcccee
Q psy7665 244 -AG--EERTVSAQNFIIAVG--GRPTYPDIPGARLLRT 276 (296)
Q Consensus 244 -~g--~~~~~~a~~vV~AtG--~~p~~p~i~G~~~~~~ 276 (296)
++ ...+..+|+||+||| +.|+.|++||.+++..
T Consensus 151 ~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G 188 (461)
T PLN02172 151 KNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPG 188 (461)
T ss_pred EcCCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCc
Confidence 22 223568999999999 6899999999986644
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.61 E-value=2.5e-14 Score=125.43 Aligned_cols=144 Identities=24% Similarity=0.369 Sum_probs=91.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCccccc--CCeeecc-CCCchhHHHHhh-------------
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGL--GGTCVNV-GCIPKKLFHRAS------------- 177 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~--GG~~~~~-~~~p~~~~~~~~------------- 177 (296)
+.+||+||||||||++||..+++.|++|+|+| +.+++|+|+.+ ||.|..+ .+.|..++.+..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid--~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLID--KGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEe--cCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 35799999999999999999999999999999 88999999888 5688433 233544443321
Q ss_pred hhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE-EE--eCCEEE--E-cceeEEEE
Q psy7665 178 LLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV-FV--DKHRVK--F-AGEERTVS 251 (296)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--~~~~v~--v-~g~~~~~~ 251 (296)
...+.+.+...+|+.....-....+. ..+.++.+...+..++++.||++++.+.. .+ ++.... + ++ .++.
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp--~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g--~~i~ 155 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFP--DSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSG--ETVK 155 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecC--CccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCC--CEEE
Confidence 12223444455554432200000000 01223445556778888999999876442 22 222333 3 34 4899
Q ss_pred eCeEEEcCCCCC
Q psy7665 252 AQNFIIAVGGRP 263 (296)
Q Consensus 252 a~~vV~AtG~~p 263 (296)
||.+|+|||..+
T Consensus 156 ~d~lilAtGG~S 167 (408)
T COG2081 156 CDSLILATGGKS 167 (408)
T ss_pred ccEEEEecCCcC
Confidence 999999999643
No 37
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.58 E-value=4.6e-15 Score=136.56 Aligned_cols=162 Identities=18% Similarity=0.275 Sum_probs=96.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCc-EEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKK-VALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH 192 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 192 (296)
..+||+|||||++|+.+|++|.++|.+ ++|+| +.+ .+||+|.... +|+.... .......++++.+.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~E--k~~------~~Gg~W~~~r-y~~l~~~----~p~~~~~~~~~p~~ 73 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFE--KRD------DVGGTWRYNR-YPGLRLD----SPKWLLGFPFLPFR 73 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEE--ccC------CcCCcchhcc-CCceEEC----CchheeccCCCccC
Confidence 567999999999999999999999998 99999 777 8999985431 1110000 00011122222222
Q ss_pred ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc--eEEEE---eCCEEEE-cceeEEEEeCeEEEcCCC--CC
Q psy7665 193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA--KAVFV---DKHRVKF-AGEERTVSAQNFIIAVGG--RP 263 (296)
Q Consensus 193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~---~~~~v~v-~g~~~~~~a~~vV~AtG~--~p 263 (296)
... ..++.....++.++.+++.... .+.+... .+.+. ..|.|++ ++...++.||+||+|||. .|
T Consensus 74 ~~~~~~~~~~~~~y~~~~~~~y~~~~-------~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P 146 (443)
T COG2072 74 WDEAFAPFAEIKDYIKDYLEKYGLRF-------QIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEP 146 (443)
T ss_pred CcccCCCcccHHHHHHHHHHHcCcee-------EEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCC
Confidence 111 3333345555555555543211 1222111 12222 2467777 332223789999999994 89
Q ss_pred CCCCCCCCccceeecccCCCCC-------CcEEEeeccC
Q psy7665 264 TYPDIPGARLLRTLSLLSGVDP-------PTLIFLEHIS 295 (296)
Q Consensus 264 ~~p~i~G~~~~~~~s~~~~~~~-------~~~~~~~~~~ 295 (296)
++|+|+|.++|-..-+|+..++ ++.+||+-++
T Consensus 147 ~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~Ga 185 (443)
T COG2072 147 YIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGA 185 (443)
T ss_pred CCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCc
Confidence 9999999998766655553333 4456665443
No 38
>PRK10262 thioredoxin reductase; Provisional
Probab=99.56 E-value=7.4e-14 Score=123.92 Aligned_cols=141 Identities=15% Similarity=0.175 Sum_probs=85.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..+||+||||||+|++||.+|+++|++++++| .. ..||.+..... .++++.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie--~~-------~~gg~~~~~~~--------------------~~~~~~ 55 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT--GM-------EKGGQLTTTTE--------------------VENWPG 55 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEE--ee-------cCCCceecCce--------------------ECCCCC
Confidence 56799999999999999999999999999999 32 45676543211 112221
Q ss_pred cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE--EeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665 194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF--VDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270 (296)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G 270 (296)
.. .++++.+.+++..+.+. .++++..++... .....++++.....+.||+||+|||+.|+.|++||
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g 124 (321)
T PRK10262 56 DPNDLTGPLLMERMHEHATK-----------FETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPS 124 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHH-----------CCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCC
Confidence 11 34455444444333332 344544433211 12233334211136899999999999999999999
Q ss_pred Cccceeecc-------cCCCCCCcEEEeecc
Q psy7665 271 ARLLRTLSL-------LSGVDPPTLIFLEHI 294 (296)
Q Consensus 271 ~~~~~~~s~-------~~~~~~~~~~~~~~~ 294 (296)
.+.+....+ -....+++++|+.++
T Consensus 125 ~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG 155 (321)
T PRK10262 125 EEAFKGRGVSACATCDGFFYRNQKVAVIGGG 155 (321)
T ss_pred HHHcCCCcEEEeecCCHHHcCCCEEEEECCC
Confidence 764432211 112345677777654
No 39
>KOG1399|consensus
Probab=99.56 E-value=3.3e-14 Score=129.59 Aligned_cols=147 Identities=18% Similarity=0.297 Sum_probs=97.9
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCc----hhHHHHhhhhHHHhhcccccC
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP----KKLFHRASLLNEEATTSDNFG 190 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~g 190 (296)
..+|+|||||+|||.+|++|.+.|++|+++| +.+ .+||.|....... +.+-....+..++...+..+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfE--r~~------~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfp 77 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFE--RTD------DIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFP 77 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEE--ecC------CccceEeecCcccccccchhhhhhccCChhhhcCCCCC
Confidence 4589999999999999999999999999999 777 9999997663322 112222223333444455554
Q ss_pred ccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE-E-eCCEEEE-cce--eEEEEeCeEEEcCCCC
Q psy7665 191 FHMKK---SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF-V-DKHRVKF-AGE--ERTVSAQNFIIAVGGR 262 (296)
Q Consensus 191 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~v~v-~g~--~~~~~a~~vV~AtG~~ 262 (296)
++... .++..++.+|++.+++.+...-.-.+ ++++.. ... . +.|.|.. ++. .....+|.||+|||-.
T Consensus 78 f~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f---~~~v~~--v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 78 FPERDPRYFPSHREVLEYLRDYAKHFDLLKMINF---NTEVVR--VDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred CcccCcccCCCHHHHHHHHHHHHHhcChhhheEe---cccEEE--EeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 44442 46777899999999988863221111 221111 111 2 4788887 222 3578899999999964
Q ss_pred --CCCCCCCC--Cccc
Q psy7665 263 --PTYPDIPG--ARLL 274 (296)
Q Consensus 263 --p~~p~i~G--~~~~ 274 (296)
|++|.+|| .+.|
T Consensus 153 ~~P~~P~~~g~~~~~f 168 (448)
T KOG1399|consen 153 VEPRIPQIPGPGIESF 168 (448)
T ss_pred CCCCCCcCCCCchhhc
Confidence 89999988 4444
No 40
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.53 E-value=3.7e-14 Score=117.35 Aligned_cols=150 Identities=21% Similarity=0.262 Sum_probs=73.4
Q ss_pred EEECCChHHHHHHHHHHhCCCc-EEEEeccCCCCCCcccccCCeeeccCCC-----chhHHHHhhhhHHHhhcccccCcc
Q psy7665 119 CVIGGGSGGISAAKEAASMNKK-VALFDFVTPSQHGTVWGLGGTCVNVGCI-----PKKLFHRASLLNEEATTSDNFGFH 192 (296)
Q Consensus 119 vVIGgG~aG~~aA~~l~~~G~~-V~iiE~~~~~~~g~~~~~GG~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~g~~ 192 (296)
+||||||+|+++|.+|.++|.+ ++|+| +.+ .+||.|...... |...... .... .+..+.+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e--~~~------~~Gg~w~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~ 67 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLE--RND------RPGGVWRRYYSYTRLHSPSFFSSD-FGLP----DFESFSFD 67 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEE--SSS------SSTTHHHCH-TTTT-BSSSCCTGG-SS------CCCHSCHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEe--CCC------CCCCeeEEeCCCCccccCcccccc-ccCC----cccccccc
Confidence 6999999999999999999999 99999 777 788888542211 1100000 0000 00000000
Q ss_pred ------ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-E---E-EeCCEEEE-cceeEEEEeCeEEEcC
Q psy7665 193 ------MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-V---F-VDKHRVKF-AGEERTVSAQNFIIAV 259 (296)
Q Consensus 193 ------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~---~-~~~~~v~v-~g~~~~~~a~~vV~At 259 (296)
... .+...++.++++.+++ +.++++..++. . . .+.|.|++ ++ .++.||+||+||
T Consensus 68 ~~~~~~~~~~~~~~~~v~~yl~~~~~-----------~~~l~i~~~~~V~~v~~~~~~w~v~~~~~--~~~~a~~VVlAt 134 (203)
T PF13738_consen 68 DSPEWRWPHDFPSGEEVLDYLQEYAE-----------RFGLEIRFNTRVESVRRDGDGWTVTTRDG--RTIRADRVVLAT 134 (203)
T ss_dssp HHHHHHHSBSSEBHHHHHHHHHHHHH-----------HTTGGEETS--EEEEEEETTTEEEEETTS---EEEEEEEEE--
T ss_pred cCCCCCCCcccCCHHHHHHHHHHHHh-----------hcCcccccCCEEEEEEEeccEEEEEEEec--ceeeeeeEEEee
Confidence 000 2334444444444433 33555544322 1 1 23467777 44 678899999999
Q ss_pred CC--CCCCCCCCC-Cccceeec-ccC---CCCCCcEEEeecc
Q psy7665 260 GG--RPTYPDIPG-ARLLRTLS-LLS---GVDPPTLIFLEHI 294 (296)
Q Consensus 260 G~--~p~~p~i~G-~~~~~~~s-~~~---~~~~~~~~~~~~~ 294 (296)
|. .|+.|++|| .....+++ .+. ....++++||+.+
T Consensus 135 G~~~~p~~p~~~g~~~~~~~h~~~~~~~~~~~~k~V~VVG~G 176 (203)
T PF13738_consen 135 GHYSHPRIPDIPGSAFRPIIHSADWRDPEDFKGKRVVVVGGG 176 (203)
T ss_dssp -SSCSB---S-TTGGCSEEEEGGG-STTGGCTTSEEEEE--S
T ss_pred eccCCCCccccccccccceEehhhcCChhhcCCCcEEEEcCh
Confidence 95 899999999 44455555 221 1233567777654
No 41
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.5e-13 Score=117.65 Aligned_cols=140 Identities=21% Similarity=0.271 Sum_probs=86.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCc-EEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKK-VALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH 192 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 192 (296)
..|||+||||||+|++||.++++.+++ ++|+| .. ..||.......+ -.+.|++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~---~~------~~gg~~~~~~~v-----------------enypg~~ 55 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILE---GG------EPGGQLTKTTDV-----------------ENYPGFP 55 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEe---cC------CcCCccccceee-----------------cCCCCCc
Confidence 458999999999999999999999998 77777 22 445533221110 1222332
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe----CCEEEEcceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665 193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD----KHRVKFAGEERTVSAQNFIIAVGGRPTYPDI 268 (296)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i 268 (296)
. ....+.+.+.+..+.. ..++++........+ .+.|+++. .++.||+||+|||+.++.|.+
T Consensus 56 ~--~~~g~~L~~~~~~~a~-----------~~~~~~~~~~v~~v~~~~~~F~v~t~~--~~~~ak~vIiAtG~~~~~~~~ 120 (305)
T COG0492 56 G--GILGPELMEQMKEQAE-----------KFGVEIVEDEVEKVELEGGPFKVKTDK--GTYEAKAVIIATGAGARKLGV 120 (305)
T ss_pred c--CCchHHHHHHHHHHHh-----------hcCeEEEEEEEEEEeecCceEEEEECC--CeEEEeEEEECcCCcccCCCC
Confidence 2 3445555555444433 337777664443322 23444433 339999999999999999999
Q ss_pred CCCccceeec------ccCCCCCCcEEEeecc
Q psy7665 269 PGARLLRTLS------LLSGVDPPTLIFLEHI 294 (296)
Q Consensus 269 ~G~~~~~~~s------~~~~~~~~~~~~~~~~ 294 (296)
||..+++... .+-....++++++.++
T Consensus 121 ~~e~e~~g~gv~yc~~cdg~~~~k~v~ViGgG 152 (305)
T COG0492 121 PGEEEFEGKGVSYCATCDGFFKGKDVVVIGGG 152 (305)
T ss_pred CcchhhcCCceEEeeecCccccCCeEEEEcCC
Confidence 8766554432 1113444477777764
No 42
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.52 E-value=3.3e-14 Score=133.24 Aligned_cols=148 Identities=19% Similarity=0.298 Sum_probs=84.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCC-chhH-HH--HhhhhHHHhhcccccCc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCI-PKKL-FH--RASLLNEEATTSDNFGF 191 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~-p~~~-~~--~~~~~~~~~~~~~~~g~ 191 (296)
.+|+|||||++|+.+|..|.+.|++++++| +.+ .+||.|...... +... .+ ...........++.+.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE--~~~------~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~ 73 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFE--KSD------DIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPF 73 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEE--SSS------SSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-H
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEe--cCC------CCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCC
Confidence 379999999999999999999999999999 777 999999653211 0000 00 00011111222333333
Q ss_pred cccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE----EEeCCEEEE--cceeEEEEeCeEEEcCCC--
Q psy7665 192 HMKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV----FVDKHRVKF--AGEERTVSAQNFIIAVGG-- 261 (296)
Q Consensus 192 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~v~v--~g~~~~~~a~~vV~AtG~-- 261 (296)
+.+. .+...++.+|++.|++.+.. ... -+.+.++..-+.. ....|.|++ +++..+..+|+||+|||.
T Consensus 74 p~~~p~f~~~~~v~~Yl~~Ya~~f~L--~~~-I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 74 PEDYPDFPSHSEVLEYLESYAEHFGL--RKH-IRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp CCCCSSSEBHHHHHHHHHHHHHHTTG--GGG-EETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhhCC--cce-EEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence 3222 56778899999999988752 111 0112222211100 012467777 454556679999999995
Q ss_pred CCCCCC--CCCCccc
Q psy7665 262 RPTYPD--IPGARLL 274 (296)
Q Consensus 262 ~p~~p~--i~G~~~~ 274 (296)
.|++|. +||.++|
T Consensus 151 ~P~~P~~~~~G~e~F 165 (531)
T PF00743_consen 151 KPNIPEPSFPGLEKF 165 (531)
T ss_dssp CESB-----CTGGGH
T ss_pred CCCCChhhhhhhhcC
Confidence 788885 9999866
No 43
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.51 E-value=3.1e-13 Score=128.24 Aligned_cols=138 Identities=20% Similarity=0.262 Sum_probs=86.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK 194 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (296)
.|||+||||||||++||.+|++.|++|+|+| + . ..||.|....++. .+.++.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE--~-~------~~GG~~~~~~~i~-----------------~~pg~~-- 55 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIE--K-D------DFGGQITITSEVV-----------------NYPGIL-- 55 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEe--c-C------CCCceEEeccccc-----------------cCCCCc--
Confidence 4899999999999999999999999999999 4 2 6788775442221 001111
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CC--EEEEcceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665 195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270 (296)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G 270 (296)
......+..+ +...++..+++++.++....+ .. .+...+ ..+.+++||+|||++|+.|++||
T Consensus 56 -~~~~~~l~~~-----------l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~--g~~~a~~lVlATGa~p~~~~ipG 121 (555)
T TIGR03143 56 -NTTGPELMQE-----------MRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTAR--GDYKTLAVLIATGASPRKLGFPG 121 (555)
T ss_pred -CCCHHHHHHH-----------HHHHHHHcCCEEeccEEEEEEecCCEEEEEecC--CEEEEeEEEECCCCccCCCCCCC
Confidence 1122222222 233345558887765543322 22 233333 35789999999999999999999
Q ss_pred Cccceeec-------ccCCCCCCcEEEeecc
Q psy7665 271 ARLLRTLS-------LLSGVDPPTLIFLEHI 294 (296)
Q Consensus 271 ~~~~~~~s-------~~~~~~~~~~~~~~~~ 294 (296)
.+.+.... .......++++|++++
T Consensus 122 ~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG 152 (555)
T TIGR03143 122 EEEFTGRGVAYCATCDGEFFTGMDVFVIGGG 152 (555)
T ss_pred HHHhCCceEEEEeecChhhcCCCEEEEECCC
Confidence 75432211 1122345677877664
No 44
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.51 E-value=6.2e-13 Score=116.53 Aligned_cols=118 Identities=26% Similarity=0.383 Sum_probs=75.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK 195 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (296)
|||+|||||++|+++|..|++.|++|+|+| +. ..||.|.....+ ....+++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie--~~-------~~gg~~~~~~~~-----------------~~~~~~~~-- 52 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIE--GM-------EPGGQLTTTTEV-----------------ENYPGFPE-- 52 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEe--cc-------CCCcceeecccc-----------------cccCCCCC--
Confidence 699999999999999999999999999999 43 356655432110 00011110
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CC--EEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665 196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KH--RVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG 270 (296)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G 270 (296)
.....++ ...+...+++.+++++..+...++ .. .++. ++ ..+.||+||+|||++|..|.+||
T Consensus 53 ~~~~~~~-----------~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~i~g 119 (300)
T TIGR01292 53 GISGPEL-----------MEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDG--KEYTAKAVIIATGASARKLGIPG 119 (300)
T ss_pred CCChHHH-----------HHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCC--CEEEeCEEEECCCCCcccCCCCC
Confidence 1111122 222334456668888765443322 22 3333 33 57899999999999999999999
Q ss_pred Cccc
Q psy7665 271 ARLL 274 (296)
Q Consensus 271 ~~~~ 274 (296)
.+.+
T Consensus 120 ~~~~ 123 (300)
T TIGR01292 120 EDEF 123 (300)
T ss_pred hhhc
Confidence 7653
No 45
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.49 E-value=6.7e-13 Score=125.06 Aligned_cols=138 Identities=21% Similarity=0.296 Sum_probs=87.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..|||+||||||+|++||.+|++.|++|+|++ . .+||+|.....++ ...+++
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~--~--------~~GG~~~~~~~~~-----------------~~~~~~- 261 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVA--E--------RFGGQVLDTMGIE-----------------NFISVP- 261 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe--c--------CCCCeeeccCccc-----------------ccCCCC-
Confidence 56899999999999999999999999999998 2 5788774321111 011111
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEEe----CCEEEE-cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFVD----KHRVKF-AGEERTVSAQNFIIAVGGRPTYPD 267 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~----~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~ 267 (296)
...+.++..+ +...++..+++++.+ ++..+. .+.+.+ ++ ..+.||.||+|||++|+.|+
T Consensus 262 --~~~~~~l~~~-----------l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g--~~i~a~~vViAtG~~~r~~~ 326 (517)
T PRK15317 262 --ETEGPKLAAA-----------LEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANG--AVLKAKTVILATGARWRNMN 326 (517)
T ss_pred --CCCHHHHHHH-----------HHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCC--CEEEcCEEEECCCCCcCCCC
Confidence 2233333333 334455567888754 332221 234444 44 46899999999999999999
Q ss_pred CCCCccceee----ccc---CCCCCCcEEEeecc
Q psy7665 268 IPGARLLRTL----SLL---SGVDPPTLIFLEHI 294 (296)
Q Consensus 268 i~G~~~~~~~----s~~---~~~~~~~~~~~~~~ 294 (296)
+||.+++... +.+ .....++.+|++++
T Consensus 327 ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG 360 (517)
T PRK15317 327 VPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGG 360 (517)
T ss_pred CCCHHHhcCceEEEeeccCchhcCCCEEEEECCC
Confidence 9997654222 211 12234567777654
No 46
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.48 E-value=4.8e-14 Score=127.98 Aligned_cols=142 Identities=20% Similarity=0.302 Sum_probs=72.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCccccc--CCeeeccC--CCchhHH-------------HHhhh
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGL--GGTCVNVG--CIPKKLF-------------HRASL 178 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~--GG~~~~~~--~~p~~~~-------------~~~~~ 178 (296)
|||+||||||||++||+.|++.|.+|+|+| ++++.|+|..+ +|.|.... ..+..+. .....
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE--~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLE--RNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE---SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEe--CCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 799999999999999999999999999999 88999999877 46784322 2221111 11112
Q ss_pred hHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE-E--EeCCE---EEE-cceeEEEE
Q psy7665 179 LNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV-F--VDKHR---VKF-AGEERTVS 251 (296)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~~~~---v~v-~g~~~~~~ 251 (296)
..+.+.++...|++.....+...+ .....+.++...+...+++.||+++.++.. . ..... |.+ ++ ..+.
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~f--P~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~--~~~~ 154 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVF--PKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG--GEYE 154 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEE--ETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT--EEEE
T ss_pred HHHHHHHHHhcCCeEEEcCCCEEC--CCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc--cccc
Confidence 223344445555533210000000 001123444555667778889999876432 2 22333 444 44 7899
Q ss_pred eCeEEEcCCCCC
Q psy7665 252 AQNFIIAVGGRP 263 (296)
Q Consensus 252 a~~vV~AtG~~p 263 (296)
||.||+|||..+
T Consensus 155 a~~vILAtGG~S 166 (409)
T PF03486_consen 155 ADAVILATGGKS 166 (409)
T ss_dssp ESEEEE----SS
T ss_pred CCEEEEecCCCC
Confidence 999999999765
No 47
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.44 E-value=6.3e-13 Score=130.46 Aligned_cols=163 Identities=16% Similarity=0.206 Sum_probs=106.7
Q ss_pred HHHccCcCCCCChHHHHHHHHHhh-cCCCCceeeccceeeeeeeccccCCccchhhhccCcceeeccccCCCCccccEEE
Q psy7665 42 QDFDALIGIHPTCAEAISLSWIKG-YNIEPEVIKLHTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCV 120 (296)
Q Consensus 42 ~~l~~~i~~~pt~~e~l~v~~~~~-~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvV 120 (296)
-.+..-+.+|+...|...+..+++ +.++...++.+.+|.+. .+.....+. .. ...+++|+|
T Consensus 375 p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~-----~~~~~~~~~------------~~-~~~~~~V~I 436 (752)
T PRK12778 375 PAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYER-----ESGNISVPE------------VA-EKNGKKVAV 436 (752)
T ss_pred hhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHH-----HhCCCCCCC------------CC-CCCCCEEEE
Confidence 445566677778999998888888 89999999998888441 000000000 01 124569999
Q ss_pred ECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHH
Q psy7665 121 IGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWK 200 (296)
Q Consensus 121 IGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 200 (296)
|||||||++||.+|+++|++|+||| +.+ .+||... |+++.- .+..
T Consensus 437 IGaGpAGl~aA~~l~~~G~~V~v~e--~~~------~~GG~l~-------------------------~gip~~-rlp~- 481 (752)
T PRK12778 437 IGSGPAGLSFAGDLAKRGYDVTVFE--ALH------EIGGVLK-------------------------YGIPEF-RLPK- 481 (752)
T ss_pred ECcCHHHHHHHHHHHHCCCeEEEEe--cCC------CCCCeee-------------------------ecCCCC-CCCH-
Confidence 9999999999999999999999999 555 6677532 222210 1110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCCCc
Q psy7665 201 TLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGAR 272 (296)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G~~ 272 (296)
.+ .......+++.|++++.+... ...+++++. ....+|+||+|||+ .|+.|++||.+
T Consensus 482 ~~-----------~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~l-~~~~ydavvlAtGa~~~~~l~ipG~~ 539 (752)
T PRK12778 482 KI-----------VDVEIENLKKLGVKFETDVIV---GKTITIEEL-EEEGFKGIFIASGAGLPNFMNIPGEN 539 (752)
T ss_pred HH-----------HHHHHHHHHHCCCEEECCCEE---CCcCCHHHH-hhcCCCEEEEeCCCCCCCCCCCCCCC
Confidence 11 111223456679999876532 223333221 34569999999998 68889999976
No 48
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.43 E-value=3.4e-12 Score=120.22 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=86.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..|||+||||||+|++||.+|++.|++|+|++ . .+||++.....++ ...+++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~--~--------~~GG~~~~~~~~~-----------------~~~~~~- 262 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA--E--------RIGGQVKDTVGIE-----------------NLISVP- 262 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe--c--------CCCCccccCcCcc-----------------cccccC-
Confidence 56899999999999999999999999999998 2 5788764321110 011111
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEE--eC--CEEEE-cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFV--DK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPD 267 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~--~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~ 267 (296)
...+.++.. .+...++..+++++.+. ...+ +. +.+++ ++ ..+.||++|+|||+.|+.|+
T Consensus 263 --~~~~~~l~~-----------~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g--~~i~~d~lIlAtGa~~~~~~ 327 (515)
T TIGR03140 263 --YTTGSQLAA-----------NLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESG--EVLKAKSVIVATGARWRKLG 327 (515)
T ss_pred --CCCHHHHHH-----------HHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCC--CEEEeCEEEECCCCCcCCCC
Confidence 112323322 23344455588887653 2222 22 23444 44 46999999999999999999
Q ss_pred CCCCccceee----ccc---CCCCCCcEEEeecc
Q psy7665 268 IPGARLLRTL----SLL---SGVDPPTLIFLEHI 294 (296)
Q Consensus 268 i~G~~~~~~~----s~~---~~~~~~~~~~~~~~ 294 (296)
+||.+++... +.+ ....+++++|++++
T Consensus 328 ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG 361 (515)
T TIGR03140 328 VPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGG 361 (515)
T ss_pred CCCHHHcCCCeEEEeeccChhhcCCCEEEEECCc
Confidence 9996543221 111 12245678887764
No 49
>PRK12831 putative oxidoreductase; Provisional
Probab=99.42 E-value=1e-12 Score=122.03 Aligned_cols=134 Identities=20% Similarity=0.245 Sum_probs=85.4
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH 192 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 192 (296)
...+||+||||||+|+++|++|+++|++|+|+| +.+ .+||.+.+. +|. +
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e--~~~------~~GG~l~~g--ip~------------------~--- 186 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFE--ALH------EPGGVLVYG--IPE------------------F--- 186 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEe--cCC------CCCCeeeec--CCC------------------c---
Confidence 356799999999999999999999999999999 555 678865321 110 0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCCC
Q psy7665 193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGA 271 (296)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G~ 271 (296)
.+....+ .......++..|++++.++.. ...+.+++....+.+|+||+|||+ +|+.|++||.
T Consensus 187 ---~l~~~~~-----------~~~~~~~~~~~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~ 249 (464)
T PRK12831 187 ---RLPKETV-----------VKKEIENIKKLGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGE 249 (464)
T ss_pred ---cCCccHH-----------HHHHHHHHHHcCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCc
Confidence 0000001 111234456679998876532 122333221123569999999998 6999999997
Q ss_pred c-cceeec--cc---------------CCCCCCcEEEeecc
Q psy7665 272 R-LLRTLS--LL---------------SGVDPPTLIFLEHI 294 (296)
Q Consensus 272 ~-~~~~~s--~~---------------~~~~~~~~~~~~~~ 294 (296)
+ ..+++. ++ ....+++++||+++
T Consensus 250 ~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG 290 (464)
T PRK12831 250 NLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGG 290 (464)
T ss_pred CCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCc
Confidence 6 334433 11 12345678888765
No 50
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.39 E-value=1.4e-12 Score=129.69 Aligned_cols=109 Identities=17% Similarity=0.307 Sum_probs=73.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+.+|+||||||||++||.+|+++|++|+||| +.+ .+||... ||++.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE--~~~------~~GG~l~-------------------------yGIP~ 351 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFE--AFH------DLGGVLR-------------------------YGIPE 351 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEe--eCC------CCCceEE-------------------------ccCCC
Confidence 35799999999999999999999999999999 666 7788532 23321
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G~~ 272 (296)
- ++. .++ .....+.++..|+++..+... ...+++++ -....+|+|++|||+ .|+.++|||.+
T Consensus 352 ~-rlp-~~v-----------i~~~i~~l~~~Gv~f~~n~~v---G~dit~~~-l~~~~yDAV~LAtGA~~pr~l~IpG~d 414 (944)
T PRK12779 352 F-RLP-NQL-----------IDDVVEKIKLLGGRFVKNFVV---GKTATLED-LKAAGFWKIFVGTGAGLPTFMNVPGEH 414 (944)
T ss_pred C-cCh-HHH-----------HHHHHHHHHhhcCeEEEeEEe---ccEEeHHH-hccccCCEEEEeCCCCCCCcCCCCCCc
Confidence 0 100 011 111234455669998876431 23344422 033569999999998 68889999976
No 51
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.33 E-value=1.1e-11 Score=122.28 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=83.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+.+|+||||||||++||++|+++|++|+|+| +.+ .+||.+.+. +|. +
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~E--k~~------~~GG~lr~~--IP~------------------~---- 585 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFE--REE------NAGGVVKNI--IPQ------------------F---- 585 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEe--ccc------ccCcceeee--ccc------------------c----
Confidence 45699999999999999999999999999999 666 678865321 221 0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~ 272 (296)
.+.. +. .....+.+...|+++..+... .+.++. .....+|+||+|||++ |..+++||.+
T Consensus 586 --Rlp~-ev-----------L~~die~l~~~GVe~~~gt~V-----di~le~-L~~~gYDaVILATGA~~~~~l~IpG~~ 645 (1019)
T PRK09853 586 --RIPA-EL-----------IQHDIEFVKAHGVKFEFGCSP-----DLTVEQ-LKNEGYDYVVVAIGADKNGGLKLEGGN 645 (1019)
T ss_pred --cccH-HH-----------HHHHHHHHHHcCCEEEeCcee-----EEEhhh-heeccCCEEEECcCCCCCCCCCCCCcc
Confidence 0010 00 111224456679998876532 123322 1345689999999996 4556789876
Q ss_pred cceeeccc----------CCCCCCcEEEeecc
Q psy7665 273 LLRTLSLL----------SGVDPPTLIFLEHI 294 (296)
Q Consensus 273 ~~~~~s~~----------~~~~~~~~~~~~~~ 294 (296)
+.+++... .....++++||+++
T Consensus 646 ~gV~saldfL~~~k~~~~~~~~GKrVVVIGGG 677 (1019)
T PRK09853 646 QNVIKALPFLEEYKNKGTALKLGKHVVVVGGG 677 (1019)
T ss_pred CCceehHHHHHHHhhhcccccCCCEEEEECCC
Confidence 55555421 12345678888764
No 52
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=99.31 E-value=7.3e-12 Score=93.32 Aligned_cols=60 Identities=27% Similarity=0.289 Sum_probs=57.0
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS 61 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~ 61 (296)
.+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.+++...+++||+++|.+..+
T Consensus 50 ~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a 109 (110)
T PF02852_consen 50 FVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEA 109 (110)
T ss_dssp EEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHH
T ss_pred eeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHh
Confidence 368999999999999999999999999999999999999999999999999999998754
No 53
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.31 E-value=1.2e-11 Score=114.69 Aligned_cols=108 Identities=21% Similarity=0.293 Sum_probs=72.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..++|+|||||++|+++|.+|++.|++|+|+| +.+ .+||.+.+ +++.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie--~~~------~~GG~l~~-------------------------gip~ 178 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFE--ALH------KPGGVVTY-------------------------GIPE 178 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCC------CCCcEeee-------------------------cCCC
Confidence 45799999999999999999999999999999 555 56775422 1110
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G~~ 272 (296)
. ..+. .+ .......+++.+++++.+... ...+++++ ....+|+||+|||+ .|+.|++||.+
T Consensus 179 ~-~~~~-~~-----------~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~--~~~~yd~viiAtGa~~p~~~~ipG~~ 240 (449)
T TIGR01316 179 F-RLPK-EI-----------VVTEIKTLKKLGVTFRMNFLV---GKTATLEE--LFSQYDAVFIGTGAGLPKLMNIPGEE 240 (449)
T ss_pred c-cCCH-HH-----------HHHHHHHHHhCCcEEEeCCcc---CCcCCHHH--HHhhCCEEEEeCCCCCCCcCCCCCCC
Confidence 0 1110 11 111223456679998876532 22333332 12468999999998 79999999976
No 54
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.29 E-value=1.8e-11 Score=121.12 Aligned_cols=129 Identities=18% Similarity=0.192 Sum_probs=81.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+++|+||||||||++||++|+++|++|+|+| +.+ .+||.+.+. +|. +
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~E--k~~------~lGG~l~~~--IP~------------------~---- 583 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFE--KKE------KPGGVVKNI--IPE------------------F---- 583 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEe--ccc------ccCceeeec--ccc------------------c----
Confidence 45799999999999999999999999999999 666 678865332 221 0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~ 272 (296)
.+.. +. .......+...||+++.+.. ..++++. .....+|+||+|||++ +..+.+||.+
T Consensus 584 --rlp~-e~-----------l~~~ie~l~~~GVe~~~g~~-----~d~~ve~-l~~~gYDaVIIATGA~~~~~l~I~G~~ 643 (1012)
T TIGR03315 584 --RISA-ES-----------IQKDIELVKFHGVEFKYGCS-----PDLTVAE-LKNQGYKYVILAIGAWKHGPLRLEGGG 643 (1012)
T ss_pred --CCCH-HH-----------HHHHHHHHHhcCcEEEEecc-----cceEhhh-hhcccccEEEECCCCCCCCCCCcCCCC
Confidence 1110 00 11112344566898876531 1122311 1235689999999986 4456788876
Q ss_pred cceeeccc----------CCCCCCcEEEeecc
Q psy7665 273 LLRTLSLL----------SGVDPPTLIFLEHI 294 (296)
Q Consensus 273 ~~~~~s~~----------~~~~~~~~~~~~~~ 294 (296)
+.+.++.. .....++++||+++
T Consensus 644 ~~v~~avefL~~~~~~~~~~~~GK~VVVIGGG 675 (1012)
T TIGR03315 644 ERVLKSLEFLRAFKEGPTINPLGKHVVVVGGG 675 (1012)
T ss_pred cceeeHHHHHHHhhccccccccCCeEEEECCC
Confidence 55555421 12356678888764
No 55
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.27 E-value=1.3e-11 Score=101.71 Aligned_cols=118 Identities=33% Similarity=0.553 Sum_probs=69.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccccc
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKS 196 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (296)
||+|||||++|+.||.+|++.|.+|+|+| +. ...+.+..|++...............
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 57 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIE--KS---------PGTPYNSGCIPSPLLVEIAPHRHEFL------------ 57 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEES--SS---------SHHHHHHSHHHHHHHHHHHHHHHHHH------------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEe--cc---------cccccccccccccccccccccccccc------------
Confidence 79999999999999999999999999999 22 22333333333322222111100000
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEc-ceEEE--EeCCE-------EEE--cceeEEEEeCeEEEcCCCCCC
Q psy7665 197 FTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN-AKAVF--VDKHR-------VKF--AGEERTVSAQNFIIAVGGRPT 264 (296)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~--~~~~~-------v~v--~g~~~~~~a~~vV~AtG~~p~ 264 (296)
. .+.+ .+...+...++++.. ..... ..... +.. .+...++.||+||+|||+.|+
T Consensus 58 -----------~-~~~~--~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 58 -----------P-ARLF--KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp -----------H-HHHG--HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred -----------c-cccc--ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 0 0000 223333445677732 33222 12221 222 344578999999999999999
Q ss_pred CCCCCCC
Q psy7665 265 YPDIPGA 271 (296)
Q Consensus 265 ~p~i~G~ 271 (296)
.|++||.
T Consensus 124 ~~~i~g~ 130 (201)
T PF07992_consen 124 TPNIPGE 130 (201)
T ss_dssp EESSTTT
T ss_pred eeecCCC
Confidence 9999997
No 56
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.25 E-value=2.3e-11 Score=122.05 Aligned_cols=110 Identities=17% Similarity=0.301 Sum_probs=72.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+++|+||||||||++||.+|+++|++|+||| +.+ .+||... +|++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E--~~~------~~GG~l~-------------------------~gip~ 475 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYE--ALH------VVGGVLQ-------------------------YGIPS 475 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEe--cCC------CCcceee-------------------------ccCCc
Confidence 45799999999999999999999999999999 665 6666321 12221
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G~~ 272 (296)
. ... .++.....+.++..|+++..+... ...++++.-.....+|+||+|||+ .|+.++|||.+
T Consensus 476 ~-rl~------------~e~~~~~~~~l~~~Gv~~~~~~~v---g~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~ 539 (1006)
T PRK12775 476 F-RLP------------RDIIDREVQRLVDIGVKIETNKVI---GKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEF 539 (1006)
T ss_pred c-CCC------------HHHHHHHHHHHHHCCCEEEeCCcc---CCccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcC
Confidence 0 000 011122344566779999876431 122332210012458999999998 58889999975
No 57
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.1e-11 Score=103.00 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=88.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEE-eccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALF-DFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH 192 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~ii-E~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 192 (296)
..|||+||||||+|.+||.|.+++|.++-++ | .+||+....-.+.. +-+.+
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae-----------rfGGQvldT~~IEN-----------------fIsv~ 261 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE-----------RFGGQVLDTMGIEN-----------------FISVP 261 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhh-----------hhCCeeccccchhh-----------------eeccc
Confidence 5699999999999999999999999987555 5 78886643322110 00011
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCCC
Q psy7665 193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA 271 (296)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G~ 271 (296)
....+.+...++.+.+++...+++.-+..+++ . .....+-..|+. +| -.++++.+|+|||++.+..++||.
T Consensus 262 ---~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~--~-a~~~~~l~ev~l~nG--avLkaktvIlstGArWRn~nvPGE 333 (520)
T COG3634 262 ---ETEGPKLAAALEAHVKQYDVDVMNLQRASKLE--P-AAVEGGLIEVELANG--AVLKARTVILATGARWRNMNVPGE 333 (520)
T ss_pred ---cccchHHHHHHHHHHhhcCchhhhhhhhhcce--e-cCCCCccEEEEecCC--ceeccceEEEecCcchhcCCCCch
Confidence 22344555555555555433222211111111 0 000011234555 67 779999999999999999999998
Q ss_pred ccc-------eeecccCCCCCCcEEEeecc
Q psy7665 272 RLL-------RTLSLLSGVDPPTLIFLEHI 294 (296)
Q Consensus 272 ~~~-------~~~s~~~~~~~~~~~~~~~~ 294 (296)
+++ +-+|.--+-..++.++|+++
T Consensus 334 ~e~rnKGVayCPHCDGPLF~gK~VAVIGGG 363 (520)
T COG3634 334 DEYRNKGVAYCPHCDGPLFKGKRVAVIGGG 363 (520)
T ss_pred HHHhhCCeeeCCCCCCcccCCceEEEECCC
Confidence 855 33444344455677888765
No 58
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.22 E-value=9.5e-11 Score=100.41 Aligned_cols=134 Identities=22% Similarity=0.271 Sum_probs=73.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..+||+||||||+|+.||++|++.|++|+|+| +...+|.....||.. .+...... .....+..+++++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liE--k~~~~Ggg~~~gg~~-----~~~~~v~~-----~~~~~l~~~gv~~ 91 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFE--RKLSFGGGMWGGGML-----FNKIVVQE-----EADEILDEFGIRY 91 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEe--cCCCCCCccccCccc-----cccccchH-----HHHHHHHHCCCCc
Confidence 56899999999999999999999999999999 565333221112211 11111110 1122233344443
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE---EeCC-EE---EEc-------c---eeEEEEeCeEE
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF---VDKH-RV---KFA-------G---EERTVSAQNFI 256 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~-~v---~v~-------g---~~~~~~a~~vV 256 (296)
....+.. + ......+...+...+.+.|++++.++... .++. .+ .++ + ....+.|+.||
T Consensus 92 ~~~~~g~-~----~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI 166 (257)
T PRK04176 92 KEVEDGL-Y----VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVV 166 (257)
T ss_pred eeecCcc-e----eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEE
Confidence 2210000 0 00113334445666677899998764311 1122 22 111 1 12578999999
Q ss_pred EcCCCCCC
Q psy7665 257 IAVGGRPT 264 (296)
Q Consensus 257 ~AtG~~p~ 264 (296)
+|||....
T Consensus 167 ~ATG~~a~ 174 (257)
T PRK04176 167 DATGHDAE 174 (257)
T ss_pred EEeCCCcH
Confidence 99996443
No 59
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.21 E-value=2.2e-11 Score=111.11 Aligned_cols=144 Identities=19% Similarity=0.213 Sum_probs=77.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeec---cCCCchhHHHHhhhhHHHhhcccccC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVN---VGCIPKKLFHRASLLNEEATTSDNFG 190 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~g 190 (296)
+.|||+||||||||++||+.|++.|.+|+|+| +.+.+|.+.-.|+.... ....|.... .+...+.....+-
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlE--k~~~~G~k~~~~~~~~~~~l~~l~~~~~~----~i~~~v~~~~~~~ 75 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLE--KGSEPGAKPCCGGGLSPRALEELIPDFDE----EIERKVTGARIYF 75 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEe--cCCCCCCCccccceechhhHHHhCCCcch----hhheeeeeeEEEe
Confidence 56899999999999999999999999999999 77766665333221110 011111000 0001111100000
Q ss_pred ccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE---EeCCEE--EE-cceeEEEEeCeEEEcCCCCC
Q psy7665 191 FHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF---VDKHRV--KF-AGEERTVSAQNFIIAVGGRP 263 (296)
Q Consensus 191 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~v--~v-~g~~~~~~a~~vV~AtG~~p 263 (296)
+... .+..+. .....-....+..++....++.|++++.++... .+...+ .+ .+. .++.||.||.|+|.++
T Consensus 76 -~~~~~~~~~~~-~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~a~~vI~AdG~~s 152 (396)
T COG0644 76 -PGEKVAIEVPV-GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD-DEVRAKVVIDADGVNS 152 (396)
T ss_pred -cCCceEEecCC-CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC-EEEEcCEEEECCCcch
Confidence 0000 000000 000000123345566777788899998765422 222222 22 222 6899999999999766
Q ss_pred CCC
Q psy7665 264 TYP 266 (296)
Q Consensus 264 ~~p 266 (296)
.+.
T Consensus 153 ~l~ 155 (396)
T COG0644 153 ALA 155 (396)
T ss_pred HHH
Confidence 544
No 60
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.21 E-value=1.2e-10 Score=108.02 Aligned_cols=109 Identities=16% Similarity=0.317 Sum_probs=68.5
Q ss_pred ccccEEEECCChHHHHHHHHHHh--CCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAAS--MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF 191 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~--~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 191 (296)
...+|+||||||||++||..|++ .|++|+||| +.+ ..||...+ +..|.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E--~~p------~pgGlvr~-gvaP~--------------------- 74 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIE--RLP------TPFGLVRS-GVAPD--------------------- 74 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEe--cCC------CCcceEee-ccCCC---------------------
Confidence 34589999999999999999987 799999999 666 66774322 11121
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCC-CCCCCCC
Q psy7665 192 HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP-TYPDIPG 270 (296)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p-~~p~i~G 270 (296)
+..... .... +...+...+++++.+... ...++++. ....+|+||+|||+.+ ..++|||
T Consensus 75 -------~~~~k~----v~~~----~~~~~~~~~v~~~~nv~v---g~dvtl~~--L~~~yDaVIlAtGa~~~~~l~IpG 134 (491)
T PLN02852 75 -------HPETKN----VTNQ----FSRVATDDRVSFFGNVTL---GRDVSLSE--LRDLYHVVVLAYGAESDRRLGIPG 134 (491)
T ss_pred -------cchhHH----HHHH----HHHHHHHCCeEEEcCEEE---CccccHHH--HhhhCCEEEEecCCCCCCCCCCCC
Confidence 111111 1111 122334457877654321 12233322 2246899999999975 6788999
Q ss_pred Cc
Q psy7665 271 AR 272 (296)
Q Consensus 271 ~~ 272 (296)
.+
T Consensus 135 ~d 136 (491)
T PLN02852 135 ED 136 (491)
T ss_pred CC
Confidence 76
No 61
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.20 E-value=1.7e-10 Score=107.24 Aligned_cols=130 Identities=19% Similarity=0.273 Sum_probs=81.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..++|+|||||++|+++|..|+++|++|+|+| +.+ .+||.+.+. +|. +
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie--~~~------~~gG~l~~g--ip~------------------~---- 186 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFE--ARD------KAGGLLRYG--IPE------------------F---- 186 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEc--cCC------CCCcEeecc--CCC------------------c----
Confidence 45799999999999999999999999999999 665 566643221 110 0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~ 272 (296)
... . .+.......+++.+++++.++.. ...+++++ ..+.+|+||+|||+. |..+++||.+
T Consensus 187 --~~~-~-----------~~~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~--~~~~~d~vvlAtGa~~~~~~~i~G~~ 247 (457)
T PRK11749 187 --RLP-K-----------DIVDREVERLLKLGVEIRTNTEV---GRDITLDE--LRAGYDAVFIGTGAGLPRFLGIPGEN 247 (457)
T ss_pred --cCC-H-----------HHHHHHHHHHHHcCCEEEeCCEE---CCccCHHH--HHhhCCEEEEccCCCCCCCCCCCCcc
Confidence 000 0 11112234456678998776532 12233322 226799999999984 7778899876
Q ss_pred -cceeecc------------cCCCCCCcEEEeecc
Q psy7665 273 -LLRTLSL------------LSGVDPPTLIFLEHI 294 (296)
Q Consensus 273 -~~~~~s~------------~~~~~~~~~~~~~~~ 294 (296)
..+.+.. ......++++|++++
T Consensus 248 ~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG 282 (457)
T PRK11749 248 LGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGG 282 (457)
T ss_pred CCCcEEHHHHHHHHhhccccccCCCCCeEEEECCC
Confidence 2333321 112246678887754
No 62
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.20 E-value=4.5e-10 Score=113.17 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=81.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..+||+||||||||++||.++++.|++|+|+| +.+ .+||.+..... .++
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD--~~~------~~GG~~~~~~~----------------------~~~- 210 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVD--EQP------EAGGSLLSEAE----------------------TID- 210 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEe--cCC------CCCCeeecccc----------------------ccC-
Confidence 35799999999999999999999999999999 666 66775532210 000
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEE-E-eCCEEEE------------c----ceeEEEEeCe
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVF-V-DKHRVKF------------A----GEERTVSAQN 254 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~-~~~~v~v------------~----g~~~~~~a~~ 254 (296)
..+...+ ...+...+... +++++.++..+ . +...+.. . +....+.+|.
T Consensus 211 --g~~~~~~-----------~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~ 277 (985)
T TIGR01372 211 --GKPAADW-----------AAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKR 277 (985)
T ss_pred --CccHHHH-----------HHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCE
Confidence 0011111 11122333433 47776543222 1 1111110 0 1112689999
Q ss_pred EEEcCCCCCCCCCCCCCcc-ceeec-----c---cCCCCCCcEEEeecc
Q psy7665 255 FIIAVGGRPTYPDIPGARL-LRTLS-----L---LSGVDPPTLIFLEHI 294 (296)
Q Consensus 255 vV~AtG~~p~~p~i~G~~~-~~~~s-----~---~~~~~~~~~~~~~~~ 294 (296)
||+|||+.++.|++||.+. .+++. + +.....++++|+..+
T Consensus 278 VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G 326 (985)
T TIGR01372 278 VVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNN 326 (985)
T ss_pred EEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCC
Confidence 9999999999999999763 34443 1 112234667777643
No 63
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.20 E-value=7.6e-11 Score=107.66 Aligned_cols=141 Identities=18% Similarity=0.238 Sum_probs=76.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhh----HHHhhcccccCc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLL----NEEATTSDNFGF 191 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~g~ 191 (296)
+||+||||||+|++||..|+++|++|+|+| +...++ ..| .+++|...+.+.... ...+.....+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE--~~~~~~------~~c--g~~i~~~~l~~~g~~~~~~~~~i~~~~~~~- 69 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLE--RKPDNA------KPC--GGAIPLCMVDEFALPRDIIDRRVTKMKMIS- 69 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEe--cCCCCC------CCc--cccccHhhHhhccCchhHHHhhhceeEEec-
Confidence 589999999999999999999999999999 444222 222 233443333221110 11111111100
Q ss_pred cccccCCHHH---HHHHH-HHHHHHHHHHHHHHHHHCCcEEEcceEEEE-------eCCEEEE---c-----ceeEEEEe
Q psy7665 192 HMKKSFTWKT---LVDNV-QKYIRNLNNNYEKELEKNKIDYFNAKAVFV-------DKHRVKF---A-----GEERTVSA 252 (296)
Q Consensus 192 ~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~v~v---~-----g~~~~~~a 252 (296)
+.....++.. ...+. .-....+...+...+.+.|++++.++.... +...+++ + ++..++.|
T Consensus 70 p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a 149 (398)
T TIGR02028 70 PSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEV 149 (398)
T ss_pred CCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEe
Confidence 0000000000 00000 011234455566777788999987764322 1123443 1 33457999
Q ss_pred CeEEEcCCCCCCCCC
Q psy7665 253 QNFIIAVGGRPTYPD 267 (296)
Q Consensus 253 ~~vV~AtG~~p~~p~ 267 (296)
+.||.|+|.++.+..
T Consensus 150 ~~VIgADG~~S~v~~ 164 (398)
T TIGR02028 150 DAVIGADGANSRVAK 164 (398)
T ss_pred CEEEECCCcchHHHH
Confidence 999999998776644
No 64
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.17 E-value=1.1e-10 Score=105.46 Aligned_cols=112 Identities=20% Similarity=0.296 Sum_probs=71.2
Q ss_pred cEEEECCChHHHHHHHHHHhC---CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 117 DLCVIGGGSGGISAAKEAASM---NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~---G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
+|||||||++|+.+|.+++++ +.+|+|+| +.+ .. ....+.|.. . .|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~--~~~------~~----~~~~~~~~~-----------~-----~g--- 49 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLIN--PSS------TT----PYSGMLPGM-----------I-----AG--- 49 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEEC--CCC------CC----cccchhhHH-----------H-----he---
Confidence 489999999999999999754 68999999 433 00 000000000 0 00
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG 270 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G 270 (296)
..+. +++...+...+++.+++++.+++..++ .+.|.+ ++ .++.+|+||+|||+.|..|++||
T Consensus 50 --~~~~-----------~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~~~yD~LviAtG~~~~~~~i~g 114 (364)
T TIGR03169 50 --HYSL-----------DEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANR--PPLSYDVLSLDVGSTTPLSGVEG 114 (364)
T ss_pred --eCCH-----------HHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCC--CcccccEEEEccCCCCCCCCCCc
Confidence 0000 111222334456678999887765543 445666 55 56899999999999999999999
Q ss_pred Cccc
Q psy7665 271 ARLL 274 (296)
Q Consensus 271 ~~~~ 274 (296)
..+.
T Consensus 115 ~~~~ 118 (364)
T TIGR03169 115 AADL 118 (364)
T ss_pred cccc
Confidence 6554
No 65
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.16 E-value=8.9e-11 Score=108.20 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=39.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
..|||+||||||+|++||+.|+++|++|+|+| +.+.++.|...||.+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llE--r~~~~g~k~~~gg~l 50 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIE--RGNSAGAKNVTGGRL 50 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEE--cCCCCCCccccccee
Confidence 35899999999999999999999999999999 666666664455543
No 66
>PRK10015 oxidoreductase; Provisional
Probab=99.15 E-value=8.7e-11 Score=108.22 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=39.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
..|||+||||||+|++||+.|++.|++|+|+| +.+.+|.|...||.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliE--r~~~~g~k~~~gg~i 50 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIE--RGDSAGCKNMTGGRL 50 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEe--cCCCCCcccccCcee
Confidence 35899999999999999999999999999999 666677765455543
No 67
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.15 E-value=2.8e-10 Score=106.12 Aligned_cols=108 Identities=21% Similarity=0.346 Sum_probs=70.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+++|+||||||+|+++|.+|+++|++|+|+| +.+ .+||.+.. .+|. +
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie--~~~------~~GG~l~~--gip~------------------~---- 189 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFE--RAD------RIGGLLRY--GIPD------------------F---- 189 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEe--cCC------CCCceeee--cCCc------------------c----
Confidence 45799999999999999999999999999999 666 66774321 1111 0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~ 272 (296)
.... .. .......+.+.|++++.++.... .+..+. ....+|+||+|||+. |..+++||.+
T Consensus 190 --~~~~-~~-----------~~~~~~~~~~~gv~~~~~~~v~~---~~~~~~--~~~~~d~vvlAtGa~~~~~l~ipG~~ 250 (471)
T PRK12810 190 --KLEK-EV-----------IDRRIELMEAEGIEFRTNVEVGK---DITAEE--LLAEYDAVFLGTGAYKPRDLGIPGRD 250 (471)
T ss_pred --cCCH-HH-----------HHHHHHHHHhCCcEEEeCCEECC---cCCHHH--HHhhCCEEEEecCCCCCCcCCCCCcc
Confidence 0010 11 11122345667999877553211 111111 234789999999996 7778899976
No 68
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.14 E-value=2.3e-10 Score=106.14 Aligned_cols=135 Identities=21% Similarity=0.295 Sum_probs=77.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCC-eeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 117 DLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGG-TCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
+|+|||||++|+++|..|++.+ .+|+||| +.+ ..+- .|. .| .+ ..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~--~~~------~~~~~~~~----~~------------------~~--~~ 49 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYE--KTD------IVSFGACG----LP------------------YF--VG 49 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEE--CCC------cceeecCC----Cc------------------eE--ec
Confidence 6999999999999999999876 4899999 444 1110 000 00 00 00
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEE--eCCEEEE-c---ceeEEEEeCeEEEcCCCCCCCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFV--DKHRVKF-A---GEERTVSAQNFIIAVGGRPTYP 266 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~v~v-~---g~~~~~~a~~vV~AtG~~p~~p 266 (296)
. .... ...+.......+++.+++++.+ ++..+ +.+.+.+ + +....+.||++|+|||++|..|
T Consensus 50 ~-~~~~----------~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 50 G-FFDD----------PNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred c-ccCC----------HHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 0 0000 0000111123355668988644 44333 3456666 2 3222344999999999999999
Q ss_pred CCCCCc-cceeecc-----cC------CCCCCcEEEeecc
Q psy7665 267 DIPGAR-LLRTLSL-----LS------GVDPPTLIFLEHI 294 (296)
Q Consensus 267 ~i~G~~-~~~~~s~-----~~------~~~~~~~~~~~~~ 294 (296)
++||.+ +.+.+.. +. ...++++++++++
T Consensus 119 ~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG 158 (444)
T PRK09564 119 PIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAG 158 (444)
T ss_pred CCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 999976 3443321 11 1246778887654
No 69
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.14 E-value=3.8e-10 Score=106.15 Aligned_cols=32 Identities=44% Similarity=0.678 Sum_probs=30.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..|||+|||||||||+||..+++.|.+|+++|
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE 34 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLT 34 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEe
Confidence 45899999999999999999999999999999
No 70
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.13 E-value=3.4e-10 Score=96.73 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=32.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
.++||+||||||+|+.||++|++.|.+|+|+| +..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlE--k~~ 54 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLE--RSL 54 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe--cCC
Confidence 56899999999999999999999999999999 666
No 71
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.13 E-value=2.2e-10 Score=100.00 Aligned_cols=30 Identities=40% Similarity=0.653 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
|||+|||||++|+++|..|++.|.+|+|+|
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie 30 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLE 30 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 699999999999999999999999999999
No 72
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.12 E-value=6.8e-10 Score=102.29 Aligned_cols=117 Identities=21% Similarity=0.329 Sum_probs=73.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
...+|||||||++|+.+|..|.+.+.+|+||| +.+ .. .+..+.|. .. .|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~--~~~------~~----~~~~~l~~---------------~~-~g--- 57 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVIS--PRN------HM----LFTPLLPQ---------------TT-TG--- 57 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEc--CCC------Cc----chhhhHHH---------------hc-cc---
Confidence 34589999999999999999987789999999 433 00 00000000 00 00
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CCEEEE----c-----ceeEEEEeCeEEEcCCCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KHRVKF----A-----GEERTVSAQNFIIAVGGR 262 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~v----~-----g~~~~~~a~~vV~AtG~~ 262 (296)
..+. +.....+...+...+++++.+++..++ ...|.+ . +...++.||++|+|||+.
T Consensus 58 --~~~~-----------~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~ 124 (424)
T PTZ00318 58 --TLEF-----------RSICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGAR 124 (424)
T ss_pred --CCCh-----------HHhHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcc
Confidence 0011 111112334455567888887765543 445655 1 122579999999999999
Q ss_pred CCCCCCCCCccc
Q psy7665 263 PTYPDIPGARLL 274 (296)
Q Consensus 263 p~~p~i~G~~~~ 274 (296)
|..|.+||.++.
T Consensus 125 ~~~~~ipG~~e~ 136 (424)
T PTZ00318 125 PNTFNIPGVEER 136 (424)
T ss_pred cCCCCCCCHHHc
Confidence 999999998654
No 73
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.12 E-value=3.2e-10 Score=101.40 Aligned_cols=29 Identities=48% Similarity=0.687 Sum_probs=26.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
||+|||||+|||+||+.+++.|.+|+|+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 79999999999999999999999999994
No 74
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.12 E-value=7.4e-10 Score=100.54 Aligned_cols=113 Identities=18% Similarity=0.265 Sum_probs=68.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+|||||||+||+.+|..|++.+ .+|+|++ +.+.. . + ....+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~--~~~~~----~------y----------------------~~~~l-- 46 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLIT--ADSGD----E------Y----------------------NKPDL-- 46 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEe--CCCCC----C------c----------------------CcCcC--
Confidence 48999999999999999998864 5799998 32200 0 0 00000
Q ss_pred cccCCHHHHHHHHHHHHHHHHH-HHHHHHHHCCcEEEcc-eEEEEe--CCEEEEcceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNN-NYEKELEKNKIDYFNA-KAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIP 269 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~-~~~~~~--~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~ 269 (296)
...... ....+.+.. .....+++.+++++.+ ++..++ .+.+.+++ ..+.||+||+|||++|..|++|
T Consensus 47 ------~~~~~~-~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~--~~~~yd~LVlATG~~~~~p~i~ 117 (377)
T PRK04965 47 ------SHVFSQ-GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKSQG--NQWQYDKLVLATGASAFVPPIP 117 (377)
T ss_pred ------cHHHhC-CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEEEECC--eEEeCCEEEECCCCCCCCCCCC
Confidence 000000 000011110 1223345668998764 443333 34555566 5799999999999999999999
Q ss_pred CCcc
Q psy7665 270 GARL 273 (296)
Q Consensus 270 G~~~ 273 (296)
|.+.
T Consensus 118 G~~~ 121 (377)
T PRK04965 118 GREL 121 (377)
T ss_pred CCce
Confidence 9765
No 75
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.12 E-value=1.9e-10 Score=112.40 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=30.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+.+|+||||||||++||++|+++|++|+|+|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E 413 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAID 413 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEc
Confidence 56799999999999999999999999999999
No 76
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.12 E-value=4.2e-10 Score=108.77 Aligned_cols=130 Identities=18% Similarity=0.259 Sum_probs=79.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..++|+||||||+|+++|..|++.|++|+|+| +.+ .+||.+... +|. +
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e--~~~------~~GG~l~~g--ip~------------------~---- 239 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFD--ANE------QAGGMMRYG--IPR------------------F---- 239 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEe--cCC------CCCceeeec--CCC------------------C----
Confidence 45799999999999999999999999999999 666 667754221 110 0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCC-CCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP-TYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p-~~p~i~G~~ 272 (296)
.. ...+. ......+...|+++..+... ...+++++ ....+|+||+|||+++ ..+++||.+
T Consensus 240 --~~-~~~~~-----------~~~~~~l~~~Gv~i~~~~~v---~~dv~~~~--~~~~~DaVilAtGa~~~~~~~ipG~~ 300 (652)
T PRK12814 240 --RL-PESVI-----------DADIAPLRAMGAEFRFNTVF---GRDITLEE--LQKEFDAVLLAVGAQKASKMGIPGEE 300 (652)
T ss_pred --CC-CHHHH-----------HHHHHHHHHcCCEEEeCCcc---cCccCHHH--HHhhcCEEEEEcCCCCCCCCCCCCcC
Confidence 00 01111 11223445668888765421 11122222 1234899999999975 567899976
Q ss_pred c-ceeec--cc-------CCCCCCcEEEeecc
Q psy7665 273 L-LRTLS--LL-------SGVDPPTLIFLEHI 294 (296)
Q Consensus 273 ~-~~~~s--~~-------~~~~~~~~~~~~~~ 294 (296)
. .+++. ++ .....+++++|+++
T Consensus 301 ~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG 332 (652)
T PRK12814 301 LPGVISGIDFLRNVALGTALHPGKKVVVIGGG 332 (652)
T ss_pred cCCcEeHHHHHHHhhcCCcccCCCeEEEECCC
Confidence 3 33332 11 23345677777664
No 77
>KOG1335|consensus
Probab=99.11 E-value=1.7e-10 Score=100.34 Aligned_cols=63 Identities=25% Similarity=0.342 Sum_probs=59.5
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHh
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIK 64 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~ 64 (296)
+.|.++|++|++|||+||+|++|+|||++.++|+..+.+.+|+++..++|||++|.++.+...
T Consensus 435 ~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~a 497 (506)
T KOG1335|consen 435 FVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMA 497 (506)
T ss_pred eeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999877653
No 78
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.11 E-value=2.2e-10 Score=92.75 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=37.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCC-eeeccCCCc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGG-TCVNVGCIP 169 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG-~~~~~~~~p 169 (296)
...||+|+||||+|++||++|++.|.+|+|+| ++. .+|| .|.-...+|
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E--~~l------s~GGG~w~GGmlf~ 77 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFE--RKL------SFGGGIWGGGMLFN 77 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEE--eec------ccCCcccccccccc
Confidence 34599999999999999999999999999999 555 5544 664433333
No 79
>KOG0404|consensus
Probab=99.09 E-value=1e-09 Score=89.11 Aligned_cols=122 Identities=22% Similarity=0.288 Sum_probs=83.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK 194 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (296)
..+|+|||.||++..||++++++..+.+++|.-+.. ....||+....-.+ -++.||+.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~----~i~pGGQLtTTT~v-----------------eNfPGFPd- 65 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN----GIAPGGQLTTTTDV-----------------ENFPGFPD- 65 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeecc----CcCCCceeeeeecc-----------------ccCCCCCc-
Confidence 348999999999999999999999999999943322 01347766443221 23345554
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE----eCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665 195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV----DKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270 (296)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G 270 (296)
.+..+++.+.++++..++ |.++++.++... .++.+.++. +.+.+|.||+|||+..+...+||
T Consensus 66 -gi~G~~l~d~mrkqs~r~-----------Gt~i~tEtVskv~~sskpF~l~td~--~~v~~~avI~atGAsAkRl~~pg 131 (322)
T KOG0404|consen 66 -GITGPELMDKMRKQSERF-----------GTEIITETVSKVDLSSKPFKLWTDA--RPVTADAVILATGASAKRLHLPG 131 (322)
T ss_pred -ccccHHHHHHHHHHHHhh-----------cceeeeeehhhccccCCCeEEEecC--CceeeeeEEEecccceeeeecCC
Confidence 556667776666655554 777777654322 233343344 67899999999999888888888
Q ss_pred Cc
Q psy7665 271 AR 272 (296)
Q Consensus 271 ~~ 272 (296)
..
T Consensus 132 ~g 133 (322)
T KOG0404|consen 132 EG 133 (322)
T ss_pred CC
Confidence 73
No 80
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.08 E-value=1.2e-09 Score=102.20 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=71.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+++|+|||||++|+++|.+|++.|++|+|+| +.+ .+||.+.+ +++.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e--~~~------~~gG~l~~-------------------------gip~ 188 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFE--RED------RCGGLLMY-------------------------GIPN 188 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEe--cCC------CCCceeec-------------------------cCCC
Confidence 45699999999999999999999999999999 555 56664321 1110
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~ 272 (296)
. ..+. . +.....+.+++.|++++.+.... ..+..+. ....+|+||+|||+. |..+++||.+
T Consensus 189 ~-~~~~-~-----------~~~~~~~~~~~~Gv~~~~~~~v~---~~~~~~~--~~~~~d~VilAtGa~~~~~l~i~G~~ 250 (485)
T TIGR01317 189 M-KLDK-A-----------IVDRRIDLLSAEGIDFVTNTEIG---VDISADE--LKEQFDAVVLAGGATKPRDLPIPGRE 250 (485)
T ss_pred c-cCCH-H-----------HHHHHHHHHHhCCCEEECCCEeC---CccCHHH--HHhhCCEEEEccCCCCCCcCCCCCcC
Confidence 0 0010 0 11112345566799998765321 1111111 235789999999997 8889999976
No 81
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.08 E-value=4.1e-10 Score=102.84 Aligned_cols=133 Identities=12% Similarity=0.080 Sum_probs=76.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEeccCCCCCCcccccCCeeeccCC-CchhHHHHhhhhHHHhhcccccCcc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPSQHGTVWGLGGTCVNVGC-IPKKLFHRASLLNEEATTSDNFGFH 192 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE~~~~~~~g~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~g~~ 192 (296)
.+|+|||||++|++||..|++.|. +|+|++ +.+ ...- ..+ .+..++. +
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~--~e~------~~~y----~r~~l~~~~~~---------------~-- 54 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFS--DER------HLPY----ERPPLSKSMLL---------------E-- 54 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeC--CCC------CCCC----CCCCCCHHHHC---------------C--
Confidence 479999999999999999999986 799999 332 0000 000 0000000 0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665 193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDI 268 (296)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i 268 (296)
...... .+ .-...+.+.+++++.++ +..++ .+.+.+ +| ..+.||+||+|||++|+.|++
T Consensus 55 -----~~~~~~--------~~--~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g--~~~~yd~LViATGs~~~~~p~ 117 (396)
T PRK09754 55 -----DSPQLQ--------QV--LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNG--ESWHWDQLFIATGAAARPLPL 117 (396)
T ss_pred -----CCcccc--------cc--CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEEcCEEEEccCCCCCCCCC
Confidence 000000 00 00122445689998764 33333 345555 45 579999999999999988777
Q ss_pred CCCc-cceeec--c---c----CCCCCCcEEEeecc
Q psy7665 269 PGAR-LLRTLS--L---L----SGVDPPTLIFLEHI 294 (296)
Q Consensus 269 ~G~~-~~~~~s--~---~----~~~~~~~~~~~~~~ 294 (296)
++.. +.+++. . . .....+++++++.+
T Consensus 118 ~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG 153 (396)
T PRK09754 118 LDALGERCFTLRHAGDAARLREVLQPERSVVIVGAG 153 (396)
T ss_pred CCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCC
Confidence 6543 334432 1 0 12235677777653
No 82
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.07 E-value=1.4e-09 Score=98.94 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=69.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeec--c-CCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVN--V-GCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~--~-~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
||+|||||++|+++|+.|++.|++|+|+| +.+ .+|+.+.+ + .+++...+.. ...........+.++.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE--~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 70 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIE--PHP------PIPGNHTYGVWDDDLSDLGLAD--CVEHVWPDVYEYRFPK 70 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEc--cCC------CCCCCccccccHhhhhhhchhh--HHhhcCCCceEEecCC
Confidence 79999999999999999999999999999 554 34443211 1 1111110000 0000000000011110
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE--e-CC--EEEE-cceeEEEEeCeEEEcCCCCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV--D-KH--RVKF-AGEERTVSAQNFIIAVGGRP 263 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-~~--~v~v-~g~~~~~~a~~vV~AtG~~p 263 (296)
. ..... ..+..-....+...+.+.+.+.+++++.+++... . .. .+++ ++ ..+.|+.||.|+|..+
T Consensus 71 ~-~~~~~--~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 71 Q-PRKLG--TAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGG--QRIQARLVIDARGFGP 141 (388)
T ss_pred c-chhcC--CceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCC--CEEEeCEEEECCCCch
Confidence 0 00000 0010111233444555666667888876654332 1 22 2333 34 5799999999999876
No 83
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.07 E-value=7.4e-10 Score=99.60 Aligned_cols=114 Identities=25% Similarity=0.369 Sum_probs=70.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
...+|+|||||++|+++|.+|++.|++|+++| +.+ .+||..... ++ .+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie--~~~------~~gg~~~~~--~~------------------~~---- 64 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYD--KLP------EPGGLMLFG--IP------------------EF---- 64 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEe--CCC------CCCceeeec--Cc------------------cc----
Confidence 45699999999999999999999999999999 666 566643211 00 00
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe-C------CE--EEE-cceeEEEEeCeEEEcCCC-C
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD-K------HR--VKF-AGEERTVSAQNFIIAVGG-R 262 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~------~~--v~v-~g~~~~~~a~~vV~AtG~-~ 262 (296)
..+... +. .....+.+.+++++.++..... . .. ... ..+...+.||+||+|||+ .
T Consensus 65 --~~~~~~-----------~~-~~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~ 130 (352)
T PRK12770 65 --RIPIER-----------VR-EGVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWK 130 (352)
T ss_pred --ccCHHH-----------HH-HHHHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCC
Confidence 000000 11 1123344558888766443211 0 11 111 111124689999999999 5
Q ss_pred CCCCCCCCCcc
Q psy7665 263 PTYPDIPGARL 273 (296)
Q Consensus 263 p~~p~i~G~~~ 273 (296)
|..|++||.+.
T Consensus 131 ~~~~~ipg~~~ 141 (352)
T PRK12770 131 SRKLGIPGEDL 141 (352)
T ss_pred CCcCCCCCccc
Confidence 78899999763
No 84
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.07 E-value=2.1e-09 Score=87.54 Aligned_cols=35 Identities=31% Similarity=0.569 Sum_probs=29.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
.++||+||||||+|++||++|++.|++|+++| +..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E--~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIE--RKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEE--SSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEe--cCC
Confidence 56899999999999999999999999999999 666
No 85
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.07 E-value=8.7e-10 Score=108.90 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=80.1
Q ss_pred cEEEECCChHHHHHHHHHHhC----CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665 117 DLCVIGGGSGGISAAKEAASM----NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH 192 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~----G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 192 (296)
+|||||+|++|+.+|..|+++ +++|+||+ +.+ ...- ..+. +
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~--~e~------~~~Y----~r~~----------------------L- 49 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFC--EEP------RIAY----DRVH----------------------L- 49 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEE--CCC------CCcc----cCCc----------------------c-
Confidence 799999999999999999764 47899999 443 1110 0000 0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeC--CEEEE-cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665 193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDI 268 (296)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~--~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i 268 (296)
..+... ...+.+.......+++.+++++.++. ..++. ..|.+ +| ..+.||+||+|||++|+.|++
T Consensus 50 -------~~~~~~--~~~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G--~~i~yD~LVIATGs~p~~p~i 118 (847)
T PRK14989 50 -------SSYFSH--HTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAG--RTVFYDKLIMATGSYPWIPPI 118 (847)
T ss_pred -------hHhHcC--CCHHHccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCC--cEEECCEEEECCCCCcCCCCC
Confidence 000000 00011111123445667999988753 33433 34444 44 578999999999999999999
Q ss_pred CCCccc-eee--cc-------cCCCCCCcEEEeecc
Q psy7665 269 PGARLL-RTL--SL-------LSGVDPPTLIFLEHI 294 (296)
Q Consensus 269 ~G~~~~-~~~--s~-------~~~~~~~~~~~~~~~ 294 (296)
||.+.. +++ +. ...+.+++.+||+++
T Consensus 119 pG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG 154 (847)
T PRK14989 119 KGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGG 154 (847)
T ss_pred CCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCC
Confidence 998742 222 21 112356778887754
No 86
>PLN02463 lycopene beta cyclase
Probab=99.06 E-value=1.5e-09 Score=100.04 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=31.2
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
...+||+||||||+|+++|..|++.|++|+|+|
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE 58 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCID 58 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEec
Confidence 356899999999999999999999999999999
No 87
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.06 E-value=7.4e-10 Score=109.15 Aligned_cols=132 Identities=19% Similarity=0.274 Sum_probs=78.6
Q ss_pred EEEECCChHHHHHHHHHHhC---CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665 118 LCVIGGGSGGISAAKEAASM---NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK 194 (296)
Q Consensus 118 VvVIGgG~aG~~aA~~l~~~---G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (296)
|||||||+||+.+|.+|++. +++|+||| +.+ ..+. ..+ .+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~--~e~------~~~y----~r~----------------------~L--- 43 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFG--EEP------HPNY----NRI----------------------LL--- 43 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEe--CCC------CCCc----ccc----------------------cc---
Confidence 68999999999999999875 46899999 444 1111 000 00
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665 195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG 270 (296)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G 270 (296)
..+..- ....+.+.....+.+++.+++++.++ +..++ .+.|.+ ++ .++.||+||+|||+.|+.|++||
T Consensus 44 -----~~~l~g-~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g--~~~~yD~LVlATGs~p~~p~ipG 115 (785)
T TIGR02374 44 -----SSVLQG-EADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAG--RTLSYDKLILATGSYPFILPIPG 115 (785)
T ss_pred -----cHHHCC-CCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCC--cEeeCCEEEECCCCCcCCCCCCC
Confidence 000000 00001111112344566799998764 43333 345665 45 57999999999999999999999
Q ss_pred Cccc-eee--cc-------cCCCCCCcEEEeecc
Q psy7665 271 ARLL-RTL--SL-------LSGVDPPTLIFLEHI 294 (296)
Q Consensus 271 ~~~~-~~~--s~-------~~~~~~~~~~~~~~~ 294 (296)
.+.. +++ +. -.....++.+||+++
T Consensus 116 ~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG 149 (785)
T TIGR02374 116 ADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGG 149 (785)
T ss_pred CCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCC
Confidence 8642 322 11 012345677777654
No 88
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.05 E-value=3e-09 Score=102.25 Aligned_cols=148 Identities=18% Similarity=0.229 Sum_probs=81.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCC---------------------CchhH
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGC---------------------IPKKL 172 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~---------------------~p~~~ 172 (296)
..+||+|||+|.||+.||+.+++.|.+|+|+||.....-++.+..||.+...+. -|...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv 128 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 128 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 567999999999999999999999999999994322211222233454422111 11111
Q ss_pred HHHhhhhHHHhhcccccCccccccCCH----HHHHH------------H----HHHHHHHHHHHHHHHHHHCCcEEEcce
Q psy7665 173 FHRASLLNEEATTSDNFGFHMKKSFTW----KTLVD------------N----VQKYIRNLNNNYEKELEKNKIDYFNAK 232 (296)
Q Consensus 173 ~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~------------~----~~~~~~~~~~~~~~~~~~~~v~~~~~~ 232 (296)
........+.+.++..+|+++....+. ..... + ....-..+...+...+.+.+++++...
T Consensus 129 ~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~ 208 (635)
T PLN00128 129 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEY 208 (635)
T ss_pred HHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence 222223445566777788877531110 00000 0 000112233344555566789987654
Q ss_pred E--E-EEe-CCEE---EE----cceeEEEEeCeEEEcCCC
Q psy7665 233 A--V-FVD-KHRV---KF----AGEERTVSAQNFIIAVGG 261 (296)
Q Consensus 233 ~--~-~~~-~~~v---~v----~g~~~~~~a~~vV~AtG~ 261 (296)
. . ..+ +..+ .+ +++...+.|+.||+|||.
T Consensus 209 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 209 FALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred EEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 3 2 222 2322 22 344567899999999996
No 89
>PLN02546 glutathione reductase
Probab=99.04 E-value=2.9e-09 Score=100.85 Aligned_cols=168 Identities=13% Similarity=0.187 Sum_probs=105.8
Q ss_pred HHHccCcCCCCChHHHHHHHHHhh--cCCCCceee----ccceeeeeeeccccCCccchhhhccCcceeeccccCCCCcc
Q psy7665 42 QDFDALIGIHPTCAEAISLSWIKG--YNIEPEVIK----LHTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYD 115 (296)
Q Consensus 42 ~~l~~~i~~~pt~~e~l~v~~~~~--~~~~~~~~~----~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (296)
+.+.++..+|..+.+..++.+..+ +.++++.+. .+.+|.+|+|+|+.+..+++++.+......+.+..+ ...
T Consensus 175 ~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p~~P~IpG~~~v~~~~~~l~~~--~~~ 252 (558)
T PLN02546 175 AELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRPFIPDIPGIEHAIDSDAALDLP--SKP 252 (558)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCCCCCCCCChhhccCHHHHHhcc--ccC
Confidence 345555556666666667777653 667887774 578999999999887666555443222222222221 123
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK 195 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (296)
.+|+|||||+.|+++|..+++.|.+|+|++ +.+ .+..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~--~~~------~il~----------------------------------- 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFI--RQK------KVLR----------------------------------- 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEE--ecc------cccc-----------------------------------
Confidence 489999999999999999999999999999 433 1000
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEE---eCCEEEE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665 196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFV---DKHRVKF-AGEERTVSAQNFIIAVGGRPTYP 266 (296)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~---~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p 266 (296)
.+. ..+...+...+++.||+++.+.. ... ++..+.+ .+......+|.|++|+|.+|+..
T Consensus 290 ---------~~d---~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 290 ---------GFD---EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred ---------ccC---HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 000 11223345566778999987643 222 1233444 22113345899999999988764
No 90
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=3e-09 Score=101.94 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=31.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||||||||.|||.||+.+++.|.+|+|+||
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK 43 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITK 43 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEc
Confidence 568999999999999999999999999999994
No 91
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.03 E-value=1.6e-09 Score=98.80 Aligned_cols=31 Identities=39% Similarity=0.651 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
|||+||||||||+++|+.|++.|++|+|+|+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~ 31 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLER 31 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 6999999999999999999999999999993
No 92
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.03 E-value=4.8e-10 Score=102.86 Aligned_cols=60 Identities=27% Similarity=0.350 Sum_probs=57.0
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS 61 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~ 61 (296)
.+|+++|++|++|||+|++|++|+|+|++++++|+++.+.+++.+++++|||++|.+...
T Consensus 394 ~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a 453 (454)
T COG1249 394 FVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEA 453 (454)
T ss_pred EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHh
Confidence 479999999999999999999999999999999999999999999999999999998653
No 93
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.03 E-value=4.2e-09 Score=101.11 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=83.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccC----CCch-----------------hH
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG----CIPK-----------------KL 172 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~----~~p~-----------------~~ 172 (296)
..+||+|||||.||+.||+.+++.|.+|+|+||.....-++....||.+...+ ..+. .+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 56899999999999999999999999999999432222222222244432211 1111 11
Q ss_pred HHHhhhhHHHhhcccccCccccccCCH---------HHH-------HHH----HHHHHHHHHHHHHHHHHHCCcEEEcce
Q psy7665 173 FHRASLLNEEATTSDNFGFHMKKSFTW---------KTL-------VDN----VQKYIRNLNNNYEKELEKNKIDYFNAK 232 (296)
Q Consensus 173 ~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~-------~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~ 232 (296)
........+.+.++..+|+++....+. ... ..+ ....-..+...+...+.+.+++++.+.
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~ 187 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEY 187 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEece
Confidence 112223445566777788776431110 000 000 000112344455566667799998764
Q ss_pred E--EEE--eCCEE---EE----cceeEEEEeCeEEEcCCC
Q psy7665 233 A--VFV--DKHRV---KF----AGEERTVSAQNFIIAVGG 261 (296)
Q Consensus 233 ~--~~~--~~~~v---~v----~g~~~~~~a~~vV~AtG~ 261 (296)
. ..+ ++..| .+ +++...+.|+.||+|||.
T Consensus 188 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 188 FALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred EEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 3 222 22322 22 344567899999999996
No 94
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.02 E-value=2.3e-09 Score=99.18 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=31.8
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
...|||+||||||+|+++|..|+++|++|+|+|+
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr 70 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIER 70 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 3568999999999999999999999999999993
No 95
>PRK13984 putative oxidoreductase; Provisional
Probab=99.01 E-value=1.2e-09 Score=105.00 Aligned_cols=130 Identities=18% Similarity=0.216 Sum_probs=81.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
...+|+|||+|++|+++|..|+++|++|+|+| +.+ ..||...+. +|. +
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie--~~~------~~gG~~~~~--i~~------------------~---- 329 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYE--SLS------KPGGVMRYG--IPS------------------Y---- 329 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEe--cCC------CCCceEeec--CCc------------------c----
Confidence 45789999999999999999999999999999 665 566643211 110 0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~ 272 (296)
.+. ..+ .......+++.|++++.+..... .+..+. ....+|+||+|||+. |+.+++||.+
T Consensus 330 --~~~-~~~-----------~~~~~~~~~~~gv~~~~~~~v~~---~~~~~~--~~~~yD~vilAtGa~~~r~l~i~G~~ 390 (604)
T PRK13984 330 --RLP-DEA-----------LDKDIAFIEALGVKIHLNTRVGK---DIPLEE--LREKHDAVFLSTGFTLGRSTRIPGTD 390 (604)
T ss_pred --cCC-HHH-----------HHHHHHHHHHCCcEEECCCEeCC---cCCHHH--HHhcCCEEEEEcCcCCCccCCCCCcC
Confidence 000 011 11122455677898877543211 111122 235799999999985 6788899976
Q ss_pred -cceeecc--cC------------CCCCCcEEEeecc
Q psy7665 273 -LLRTLSL--LS------------GVDPPTLIFLEHI 294 (296)
Q Consensus 273 -~~~~~s~--~~------------~~~~~~~~~~~~~ 294 (296)
..+.+.. +. ...+++++||+++
T Consensus 391 ~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG 427 (604)
T PRK13984 391 HPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGG 427 (604)
T ss_pred CcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCc
Confidence 3344331 10 1235788888765
No 96
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.01 E-value=6.4e-10 Score=102.47 Aligned_cols=138 Identities=22% Similarity=0.272 Sum_probs=34.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc-ccc
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH-MKK 195 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~-~~~ 195 (296)
||||||||++|++||+.+++.|.+|+|+| +.+.+|.....|+.+...+..... ........+........+-. ...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE--~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIE--KGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE---SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEE--CCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhccccccc
Confidence 89999999999999999999999999999 777344333333322111111000 11111112222222221100 000
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE---EeC---CEEEE--cceeEEEEeCeEEEcCC
Q psy7665 196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF---VDK---HRVKF--AGEERTVSAQNFIIAVG 260 (296)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~---~~v~v--~g~~~~~~a~~vV~AtG 260 (296)
...|.. ...-..+.+...+.+.+.+.|++++.++... .++ ..|.+ .++..++.|+.+|.|||
T Consensus 78 ~~~~~~---~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 78 RYGWVS---NVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATG 147 (428)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000000 0011112223334555566788887664321 222 23444 22357899999999999
No 97
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.01 E-value=1.7e-09 Score=100.13 Aligned_cols=136 Identities=13% Similarity=0.229 Sum_probs=75.1
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCeeeccCC-CchhHHHHhhhhHHHhhcccccCccc
Q psy7665 117 DLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTCVNVGC-IPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
+|||||||++|+.+|..|++. +.+|+|+| +.+ ..+ +..| +|... .+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~--~~~------~~~----~~~~~lp~~~----------------~~~-- 52 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFE--KDR------DMS----FANCALPYYI----------------GEV-- 52 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEE--CCC------Ccc----cccCCcchhh----------------cCc--
Confidence 799999999999999999987 57899999 443 111 0000 01000 000
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEc-ceEEEE--eCCEEEE-c---ceeEEEEeCeEEEcCCCCCCCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN-AKAVFV--DKHRVKF-A---GEERTVSAQNFIIAVGGRPTYP 266 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~--~~~~v~v-~---g~~~~~~a~~vV~AtG~~p~~p 266 (296)
........ .+. .....++.+++++. .++..+ +...|.+ + ++..++.||+||+|||++|+.|
T Consensus 53 --~~~~~~~~--------~~~--~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~ 120 (438)
T PRK13512 53 --VEDRKYAL--------AYT--PEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSL 120 (438)
T ss_pred --cCCHHHcc--------cCC--HHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence 00000000 000 01122445888864 444333 3456666 2 2233578999999999999888
Q ss_pred CCCCCccceeecc---------cCCCCCCcEEEeecc
Q psy7665 267 DIPGARLLRTLSL---------LSGVDPPTLIFLEHI 294 (296)
Q Consensus 267 ~i~G~~~~~~~s~---------~~~~~~~~~~~~~~~ 294 (296)
++++...+...+. .....+++++|++++
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG 157 (438)
T PRK13512 121 GFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAG 157 (438)
T ss_pred CCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 7765322222111 112346788888754
No 98
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.00 E-value=2.9e-09 Score=99.18 Aligned_cols=144 Identities=14% Similarity=0.199 Sum_probs=77.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcc-cccCCeeecc--CCCc-----------------hhHHHH
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTV-WGLGGTCVNV--GCIP-----------------KKLFHR 175 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~-~~~GG~~~~~--~~~p-----------------~~~~~~ 175 (296)
+||+|||||.||+.||..+++.|.+|+|+|+ ....+.+ +.-||.+... ..-| ......
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek--~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 79 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGP--GIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNV 79 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeC--CCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5999999999999999999999999999994 3322211 1123332110 0011 111111
Q ss_pred hhhhHHHhhcccccCcccccc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE-E-eCCEE---EEcc
Q psy7665 176 ASLLNEEATTSDNFGFHMKKS-----FTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF-V-DKHRV---KFAG 245 (296)
Q Consensus 176 ~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~v---~v~g 245 (296)
.....+.+.++..+|+++... ..++............+...+...+++.+++++...... . +...+ .+++
T Consensus 80 ~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~g 159 (466)
T PRK08401 80 ISKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLDG 159 (466)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEECC
Confidence 122233445666667665320 011100000011122344445566677799987654422 1 22333 2255
Q ss_pred eeEEEEeCeEEEcCCCCC
Q psy7665 246 EERTVSAQNFIIAVGGRP 263 (296)
Q Consensus 246 ~~~~~~a~~vV~AtG~~p 263 (296)
..+.++.||+|||+.+
T Consensus 160 --~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 160 --ELLKFDATVIATGGFS 175 (466)
T ss_pred --EEEEeCeEEECCCcCc
Confidence 4689999999999744
No 99
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.00 E-value=4.6e-09 Score=100.36 Aligned_cols=148 Identities=22% Similarity=0.246 Sum_probs=81.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccC----CCc-----------------hhH
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG----CIP-----------------KKL 172 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~----~~p-----------------~~~ 172 (296)
..+||+|||+|.|||.||+.+++.|.+|+|+||.....-++.+..||.+...+ ..+ ..+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 45799999999999999999999999999999432221122222244332111 111 112
Q ss_pred HHHhhhhHHHhhcccccCccccccCCHHHHH----HH---------------HHHHHHHHHHHHHHHHHHCCcEEEcceE
Q psy7665 173 FHRASLLNEEATTSDNFGFHMKKSFTWKTLV----DN---------------VQKYIRNLNNNYEKELEKNKIDYFNAKA 233 (296)
Q Consensus 173 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~---------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 233 (296)
........+.+.++..+|++++...+..... .+ ....-..+...+...+.+.+++++..+.
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~ 165 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWY 165 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcE
Confidence 2223344556677777888775311100000 00 0001122333445555567898876543
Q ss_pred --EEE-e-CCEE---EE----cceeEEEEeCeEEEcCCC
Q psy7665 234 --VFV-D-KHRV---KF----AGEERTVSAQNFIIAVGG 261 (296)
Q Consensus 234 --~~~-~-~~~v---~v----~g~~~~~~a~~vV~AtG~ 261 (296)
... + +..| .. ++....+.|+.||+|||.
T Consensus 166 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 166 ALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred EEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 122 2 2332 21 344457889999999996
No 100
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.99 E-value=1.9e-09 Score=100.40 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=70.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+.+|+||||||+|+++|..|+++|++|+|+| +.+ .+||...+ .+|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e--~~~------~~gG~l~~--gip~~---------------------- 187 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFD--RHP------EIGGLLTF--GIPSF---------------------- 187 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEe--cCC------CCCceeee--cCccc----------------------
Confidence 45799999999999999999999999999999 666 67774322 12210
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCC-CCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~-~p~i~G~~ 272 (296)
..+ ..+.......+++.|++++.+... . ..+.+++ ....+|+||+|||+.+. .++|||.+
T Consensus 188 --~~~------------~~~~~~~~~~~~~~Gv~~~~~~~v--~-~~~~~~~--~~~~~D~vilAtGa~~~~~~~i~g~~ 248 (467)
T TIGR01318 188 --KLD------------KAVLSRRREIFTAMGIEFHLNCEV--G-RDISLDD--LLEDYDAVFLGVGTYRSMRGGLPGED 248 (467)
T ss_pred --cCC------------HHHHHHHHHHHHHCCCEEECCCEe--C-CccCHHH--HHhcCCEEEEEeCCCCCCcCCCCCcC
Confidence 001 011112234566779998765422 1 1122222 12469999999999764 46788876
No 101
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.98 E-value=2.4e-09 Score=96.23 Aligned_cols=115 Identities=23% Similarity=0.364 Sum_probs=74.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+|||||||.+|+.+|..|.+.- .++++|| +.+ ..+++. .+++ ....
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd--~~~--------------~hl~~p-lL~e----------va~g---- 52 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVD--RRD--------------YHLFTP-LLYE----------VATG---- 52 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEe--CCC--------------ccccch-hhhh----------hhcC----
Confidence 47999999999999999999975 8899999 443 000000 0000 0000
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEEe--CCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~--~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G 270 (296)
.++. ......+...+... +++++.+++..++ .++|++.+ ...+.||++|+|+|+.+..+.+||
T Consensus 53 --~l~~-----------~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~-~~~i~YD~LVvalGs~~~~fgi~G 118 (405)
T COG1252 53 --TLSE-----------SEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLAD-LGEISYDYLVVALGSETNYFGIPG 118 (405)
T ss_pred --CCCh-----------hheeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCC-CccccccEEEEecCCcCCcCCCCC
Confidence 1111 11222344455534 4899888776543 55677733 267999999999999999999999
Q ss_pred Cccce
Q psy7665 271 ARLLR 275 (296)
Q Consensus 271 ~~~~~ 275 (296)
..++.
T Consensus 119 ~~E~a 123 (405)
T COG1252 119 AAEYA 123 (405)
T ss_pred HHHhC
Confidence 76543
No 102
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.98 E-value=1.2e-08 Score=98.28 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=30.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..+||+|||+|.|||+||+.+++.|.+|+|+|
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~Vilie 65 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFC 65 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEe
Confidence 46799999999999999999999999999999
No 103
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.98 E-value=3.1e-09 Score=97.70 Aligned_cols=32 Identities=47% Similarity=0.670 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
||||||+|.+|+.||++++++|.+|+|+| +.+
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lve--k~~ 32 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVE--KGP 32 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEE--SSS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEE--eec
Confidence 89999999999999999999999999999 555
No 104
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=7.1e-09 Score=98.77 Aligned_cols=33 Identities=45% Similarity=0.645 Sum_probs=31.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+|||+|.||+.||+.+++.|.+|+|+||
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK 36 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISK 36 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEc
Confidence 457999999999999999999999999999994
No 105
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.97 E-value=2.2e-09 Score=98.09 Aligned_cols=139 Identities=19% Similarity=0.268 Sum_probs=76.0
Q ss_pred EEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCccccc--CCeeeccCC--CchhHHHHh------------hhhHHH
Q psy7665 119 CVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGL--GGTCVNVGC--IPKKLFHRA------------SLLNEE 182 (296)
Q Consensus 119 vVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~--GG~~~~~~~--~p~~~~~~~------------~~~~~~ 182 (296)
+|||||++|++||+.|++.|++|+|+| +.+..|.|+.. +|.|..... .+....... ....+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llE--k~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLE--KNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEe--cCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence 699999999999999999999999999 77777887655 346632211 111000000 001112
Q ss_pred hhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EE--EeCCEEEE--cceeEEEEeCeEEE
Q psy7665 183 ATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VF--VDKHRVKF--AGEERTVSAQNFII 257 (296)
Q Consensus 183 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~~~~v~v--~g~~~~~~a~~vV~ 257 (296)
..++...|.+.....+. .+.. .......+...+...+++.+++++.+.. .. .+...+.+ ++ ..+.+|.||+
T Consensus 79 ~~~~~~~Gv~~~~~~~g-~~~p-~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~--~~i~ad~VIl 154 (400)
T TIGR00275 79 IDFFESLGLELKVEEDG-RVFP-CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSG--GEYEADKVIL 154 (400)
T ss_pred HHHHHHcCCeeEEecCC-EeEC-CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECC--cEEEcCEEEE
Confidence 22333334322110000 0000 0011233444556667778999876543 22 12223333 44 4689999999
Q ss_pred cCCCCC
Q psy7665 258 AVGGRP 263 (296)
Q Consensus 258 AtG~~p 263 (296)
|+|..+
T Consensus 155 AtG~~s 160 (400)
T TIGR00275 155 ATGGLS 160 (400)
T ss_pred CCCCcc
Confidence 999754
No 106
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.97 E-value=9.5e-10 Score=98.29 Aligned_cols=32 Identities=28% Similarity=0.604 Sum_probs=28.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+||||||+|+++|..|+++|++|+|||+
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIER 32 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchh
Confidence 37999999999999999999999999999993
No 107
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.96 E-value=7.2e-09 Score=96.70 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=30.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||||||+|++|++||++++++|.+|+|+|+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk 35 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEA 35 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 357999999999999999999999999999994
No 108
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.96 E-value=1.5e-08 Score=96.32 Aligned_cols=50 Identities=30% Similarity=0.512 Sum_probs=42.1
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccC---CCchh
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG---CIPKK 171 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~---~~p~~ 171 (296)
+..+||||||+| +|++||..+++.|.+|+|+| +.+ .+||++...+ |+|..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~E--k~~------~~GG~~~~~gG~~~~~~~ 66 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVE--KSS------YVGGSTARSGGAFWLPAS 66 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEe--cCC------CCcCcccCcCCCEecCCh
Confidence 457899999999 89999999999999999999 666 6788877665 55543
No 109
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=7.8e-10 Score=100.62 Aligned_cols=31 Identities=48% Similarity=0.784 Sum_probs=29.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.|||+|||||+|||+||..+++.|.+++++.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT 34 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLT 34 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEE
Confidence 4899999999999999999999999999998
No 110
>PLN02697 lycopene epsilon cyclase
Probab=98.95 E-value=6.7e-09 Score=97.42 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=31.2
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+..+||+||||||+|+++|..|++.|++|+++|
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe 138 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIG 138 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEec
Confidence 356899999999999999999999999999999
No 111
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.95 E-value=3e-09 Score=103.09 Aligned_cols=108 Identities=18% Similarity=0.247 Sum_probs=69.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+.+|+||||||+|+++|.+|++.|++|+|+| +.+ .+||...+ .+|..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E--~~~------~~GG~l~~--gip~~---------------------- 373 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYD--RHP------EIGGLLTF--GIPAF---------------------- 373 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe--cCC------CCCceeee--cCCCc----------------------
Confidence 45799999999999999999999999999999 666 67775432 12210
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~ 272 (296)
.+.. .+.......+++.|+++..+.... ..+.+.. ....+|+|++|||+. +..+.+||.+
T Consensus 374 --~l~~------------~~~~~~~~~~~~~Gv~~~~~~~v~---~~i~~~~--~~~~~DavilAtGa~~~~~l~i~g~~ 434 (654)
T PRK12769 374 --KLDK------------SLLARRREIFSAMGIEFELNCEVG---KDISLES--LLEDYDAVFVGVGTYRSMKAGLPNED 434 (654)
T ss_pred --cCCH------------HHHHHHHHHHHHCCeEEECCCEeC---CcCCHHH--HHhcCCEEEEeCCCCCCCCCCCCCCC
Confidence 1110 011112344566789887654211 1122211 123689999999985 4456788865
No 112
>PRK06834 hypothetical protein; Provisional
Probab=98.94 E-value=9.1e-09 Score=96.35 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr 34 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVER 34 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 47999999999999999999999999999993
No 113
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=1.2e-08 Score=97.68 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=30.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC---CcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMN---KKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G---~~V~iiE~ 146 (296)
..+||+|||||.|||.||+.+++.| .+|+|+||
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK 39 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSK 39 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEc
Confidence 4679999999999999999999998 89999994
No 114
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.92 E-value=1.6e-08 Score=96.68 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
||+|||||.||++||+.+++.|.+|+|+||
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK 30 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISK 30 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence 799999999999999999999999999994
No 115
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=1.3e-08 Score=97.93 Aligned_cols=33 Identities=39% Similarity=0.532 Sum_probs=31.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+|||+|.||+.||+.+++.|.+|+|+||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK 39 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCK 39 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEec
Confidence 567999999999999999999999999999994
No 116
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.92 E-value=5.9e-08 Score=86.74 Aligned_cols=30 Identities=37% Similarity=0.578 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
||+|||||.+|+++|++|++.|++|+|+|+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~ 30 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLER 30 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEee
Confidence 799999999999999999999999999993
No 117
>PRK06370 mercuric reductase; Validated
Probab=98.91 E-value=3.5e-09 Score=98.70 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=59.4
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHh
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIK 64 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~ 64 (296)
.+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...+..
T Consensus 393 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~ 455 (463)
T PRK06370 393 FMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQA 455 (463)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999999999999998877653
No 118
>PRK14694 putative mercuric reductase; Provisional
Probab=98.91 E-value=3.6e-09 Score=98.76 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=58.4
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+.....
T Consensus 393 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 454 (468)
T PRK14694 393 FIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQ 454 (468)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999998876554
No 119
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.90 E-value=1.2e-08 Score=96.06 Aligned_cols=38 Identities=29% Similarity=0.538 Sum_probs=33.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHG 153 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g 153 (296)
.++||||||+|.+|++||+++++.|.+|+|+| +....|
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlE--K~~~~G 97 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILE--KMPVAG 97 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEE--CCCCCC
Confidence 46799999999999999999999999999999 555333
No 120
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.90 E-value=3.8e-09 Score=98.42 Aligned_cols=62 Identities=19% Similarity=-0.012 Sum_probs=58.5
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...+.
T Consensus 393 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 454 (461)
T PRK05249 393 MLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAAL 454 (461)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998877654
No 121
>PLN02507 glutathione reductase
Probab=98.90 E-value=4.2e-09 Score=98.89 Aligned_cols=67 Identities=28% Similarity=0.415 Sum_probs=60.6
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHhhcCC
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIKGYNI 68 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~~~~~ 68 (296)
.+|+|+|++|++|||+|++|++++|+|+.++++|+++++.++|.+++++|||++|.+.....++...
T Consensus 423 ~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~~~~ 489 (499)
T PLN02507 423 VMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMRSVTRRV 489 (499)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHHhhhccc
Confidence 4789999999999999999999999999999999999999999999999999999997665454433
No 122
>PRK06847 hypothetical protein; Provisional
Probab=98.90 E-value=1.3e-08 Score=92.21 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..||+|||||++|+++|..|++.|.+|+|+|+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 35899999999999999999999999999993
No 123
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.89 E-value=2.2e-08 Score=95.02 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=31.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+|||+|.||+.||+.+++.|.+|+|+||
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK 47 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTK 47 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEc
Confidence 567999999999999999999999999999993
No 124
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.89 E-value=5.7e-09 Score=100.83 Aligned_cols=108 Identities=20% Similarity=0.290 Sum_probs=69.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+.+|+||||||+|+++|..|+++|++|+|+| +.+ .+||.+.+ +++.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e--~~~------~~GG~l~~-------------------------gip~ 355 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFD--RHP------EIGGMLTF-------------------------GIPP 355 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEe--CCC------CCCCeeec-------------------------cCCc
Confidence 46799999999999999999999999999999 666 67775422 1111
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~ 272 (296)
. .++.. . .......++..|++++.+... ...+.+.+ ....+|+|++|||+. +..+++||.+
T Consensus 356 ~-~l~~~-~-----------~~~~~~~~~~~Gv~~~~~~~v---~~~~~~~~--l~~~~DaV~latGa~~~~~~~i~g~~ 417 (639)
T PRK12809 356 F-KLDKT-V-----------LSQRREIFTAMGIDFHLNCEI---GRDITFSD--LTSEYDAVFIGVGTYGMMRADLPHED 417 (639)
T ss_pred c-cCCHH-H-----------HHHHHHHHHHCCeEEEcCCcc---CCcCCHHH--HHhcCCEEEEeCCCCCCCCCCCCCCc
Confidence 0 11111 0 111234456779998765421 11122222 224689999999985 4457788876
No 125
>PRK14727 putative mercuric reductase; Provisional
Probab=98.89 E-value=4.3e-09 Score=98.50 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=58.6
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+...+.
T Consensus 404 ~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~ 465 (479)
T PRK14727 404 FIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQ 465 (479)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999998877664
No 126
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.89 E-value=9.7e-09 Score=94.77 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=28.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.++||||||+|.||+.||+.++ .|.+|+|+||
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK 34 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSK 34 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEec
Confidence 3579999999999999999985 7999999994
No 127
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.89 E-value=3.4e-09 Score=98.40 Aligned_cols=58 Identities=26% Similarity=0.472 Sum_probs=55.5
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAIS 59 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~ 59 (296)
.+|+++|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+.
T Consensus 390 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~ 447 (450)
T TIGR01421 390 RMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELV 447 (450)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHh
Confidence 4789999999999999999999999999999999999999999999999999999764
No 128
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.89 E-value=5.1e-09 Score=97.70 Aligned_cols=63 Identities=11% Similarity=0.198 Sum_probs=59.3
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHh
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIK 64 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~ 64 (296)
.+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+.+++|||++|.++..++.
T Consensus 396 ~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 458 (466)
T PRK07818 396 FVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFHG 458 (466)
T ss_pred EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999877653
No 129
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.89 E-value=8e-09 Score=93.60 Aligned_cols=143 Identities=16% Similarity=0.117 Sum_probs=72.9
Q ss_pred cEEEECCChHHHHHHHHH--HhCCCcEEEEeccCCCCCCcccccCC--eeeccCCCchhHHHHhhhhHHHh-hcccccCc
Q psy7665 117 DLCVIGGGSGGISAAKEA--ASMNKKVALFDFVTPSQHGTVWGLGG--TCVNVGCIPKKLFHRASLLNEEA-TTSDNFGF 191 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l--~~~G~~V~iiE~~~~~~~g~~~~~GG--~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~g~ 191 (296)
||+||||||||+++|.+| ++.|.+|+|+| +..+.+ ... +|..+.--... ..+.+ ..+..+.+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid--~~~~~~----~~~~~tW~~~~~~~~~-------~~~~v~~~w~~~~v 67 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLID--PKPKPP----WPNDRTWCFWEKDLGP-------LDSLVSHRWSGWRV 67 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEc--CCcccc----ccCCcccccccccccc-------hHHHHheecCceEE
Confidence 899999999999999999 78899999999 444221 022 22111110000 00000 11111111
Q ss_pred cccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CC--EEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665 192 HMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KH--RVKF-AGEERTVSAQNFIIAVGGRPTY 265 (296)
Q Consensus 192 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~v~v-~g~~~~~~a~~vV~AtG~~p~~ 265 (296)
.++. ...... ..|..-....+...+...+...++..+...+..+. .. .+++ +| .++.|+.||.|+|..+..
T Consensus 68 ~~~~~~~~~~~-~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g--~~i~a~~VvDa~g~~~~~ 144 (374)
T PF05834_consen 68 YFPDGSRILID-YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADG--RTIRARVVVDARGPSSPK 144 (374)
T ss_pred EeCCCceEEcc-cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCC--CEEEeeEEEECCCccccc
Confidence 1111 000000 11111122344455556666556666666554332 22 2333 55 589999999999965543
Q ss_pred CCCCCCccce
Q psy7665 266 PDIPGARLLR 275 (296)
Q Consensus 266 p~i~G~~~~~ 275 (296)
..-.+.+.|.
T Consensus 145 ~~~~~~Q~f~ 154 (374)
T PF05834_consen 145 ARPLGLQHFY 154 (374)
T ss_pred ccccccceeE
Confidence 3334444443
No 130
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=2.7e-08 Score=95.21 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=31.6
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
+..+||+|||+|.||+.||+.+++.|.+|+|+|+
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK 43 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSK 43 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence 3568999999999999999999999999999994
No 131
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.88 E-value=1.2e-08 Score=92.98 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=30.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+||||||+|+++|+.|+++|.+|+|+|+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~ 37 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEG 37 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeC
Confidence 457999999999999999999999999999993
No 132
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.88 E-value=4.9e-09 Score=97.04 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=56.7
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS 61 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~ 61 (296)
.+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+.+++|||++|.+...
T Consensus 376 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 435 (438)
T PRK07251 376 AFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDL 435 (438)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999987654
No 133
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.87 E-value=8.1e-09 Score=93.72 Aligned_cols=134 Identities=14% Similarity=0.128 Sum_probs=82.4
Q ss_pred ccceeeeeeeccccCCccchhhhccCcceeecc-----ccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCC
Q psy7665 75 LHTPYLVLAKARFLLPTLECQEVYHDGRFYDYL-----DNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTP 149 (296)
Q Consensus 75 ~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~ 149 (296)
.+.+|.+++|+|+.+..++.++.+....+.... ... .....+|+|||||+.|+++|..|++.|.+|++++ +.
T Consensus 97 ~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~--~~ 173 (377)
T PRK04965 97 QWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQ-LRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVD--NA 173 (377)
T ss_pred EEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHH-hhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEe--cC
Confidence 467899999999877655544432211111110 000 0123589999999999999999999999999999 43
Q ss_pred CCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEE
Q psy7665 150 SQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229 (296)
Q Consensus 150 ~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 229 (296)
+ .+... ..+ ......+...+++.|++++
T Consensus 174 ~------~~l~~----------------------------------~~~------------~~~~~~l~~~l~~~gV~i~ 201 (377)
T PRK04965 174 A------SLLAS----------------------------------LMP------------PEVSSRLQHRLTEMGVHLL 201 (377)
T ss_pred C------cccch----------------------------------hCC------------HHHHHHHHHHHHhCCCEEE
Confidence 3 10000 000 1112234455677799987
Q ss_pred cceE-EEEe--CCE--EEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665 230 NAKA-VFVD--KHR--VKF-AGEERTVSAQNFIIAVGGRPTY 265 (296)
Q Consensus 230 ~~~~-~~~~--~~~--v~v-~g~~~~~~a~~vV~AtG~~p~~ 265 (296)
.+.. .... ... +.. ++ .++.||.||+|+|.+|+.
T Consensus 202 ~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 202 LKSQLQGLEKTDSGIRATLDSG--RSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred ECCeEEEEEccCCEEEEEEcCC--cEEECCEEEECcCCCcch
Confidence 6532 2221 222 333 45 579999999999998764
No 134
>PRK07121 hypothetical protein; Validated
Probab=98.87 E-value=5.1e-08 Score=91.61 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=32.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
.++||||||+|.+|+.||+++++.|.+|+|+| +..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillE--K~~ 53 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLE--RAA 53 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEe--CCC
Confidence 46799999999999999999999999999999 555
No 135
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.87 E-value=2.1e-08 Score=95.78 Aligned_cols=33 Identities=42% Similarity=0.642 Sum_probs=30.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--CCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~ 146 (296)
..+||+|||||.||+.||+.+++. |.+|+|+||
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK 37 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISK 37 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEc
Confidence 567999999999999999999987 479999994
No 136
>PRK08244 hypothetical protein; Provisional
Probab=98.87 E-value=1.6e-08 Score=95.06 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr 33 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIER 33 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 47999999999999999999999999999993
No 137
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.87 E-value=5.6e-09 Score=97.36 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=58.7
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+++|++|++|||+|++|++|+|+|+.++++|+.+++.++|.+++++|||++|.+...+.
T Consensus 396 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~ 457 (466)
T PRK06115 396 FAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAM 457 (466)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999877764
No 138
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.87 E-value=5.8e-09 Score=97.28 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=58.4
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+.+++|||++|.+...++
T Consensus 396 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 457 (466)
T PRK07845 396 FVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAAR 457 (466)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999998876655
No 139
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.87 E-value=4.3e-09 Score=98.32 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=57.1
Q ss_pred cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHH
Q psy7665 3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSW 62 (296)
Q Consensus 3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~ 62 (296)
+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+....
T Consensus 412 ~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~ 471 (486)
T TIGR01423 412 AKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMR 471 (486)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhc
Confidence 689999999999999999999999999999999999999999999999999999887664
No 140
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.87 E-value=5.2e-09 Score=100.52 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=58.8
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
++|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|..++++|||++|.+...++
T Consensus 590 ~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~ 651 (659)
T PTZ00153 590 MVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFK 651 (659)
T ss_pred EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999877665
No 141
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.87 E-value=6e-09 Score=97.01 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=58.1
Q ss_pred cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.++..++
T Consensus 389 ~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 449 (458)
T PRK06912 389 VKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALL 449 (458)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999877654
No 142
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.87 E-value=4.6e-09 Score=97.46 Aligned_cols=59 Identities=32% Similarity=0.514 Sum_probs=56.1
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISL 60 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v 60 (296)
.+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+..
T Consensus 386 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 444 (446)
T TIGR01424 386 LMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVT 444 (446)
T ss_pred EEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhh
Confidence 47899999999999999999999999999999999999999999999999999998753
No 143
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=3.5e-08 Score=94.49 Aligned_cols=31 Identities=35% Similarity=0.562 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.||+|||+|.||+.||+.+++.|.+|+|+||
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK 34 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSL 34 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEc
Confidence 4999999999999999999999999999994
No 144
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.87 E-value=1.8e-07 Score=85.48 Aligned_cols=32 Identities=31% Similarity=0.591 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHHHhC--CCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASM--NKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~ 146 (296)
.+||+|||||.+|+++|++|+++ |.+|+|+|+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~ 35 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEK 35 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 37999999999999999999999 999999993
No 145
>PRK06116 glutathione reductase; Validated
Probab=98.86 E-value=4.8e-09 Score=97.45 Aligned_cols=59 Identities=29% Similarity=0.404 Sum_probs=56.1
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISL 60 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v 60 (296)
.+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+..
T Consensus 390 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 448 (450)
T PRK06116 390 LMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVT 448 (450)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhh
Confidence 47899999999999999999999999999999999999999999999999999998754
No 146
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.86 E-value=6.2e-09 Score=96.49 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=58.2
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+.+++|||++|.+...+.
T Consensus 377 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 438 (441)
T PRK08010 377 VLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 (441)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999998876654
No 147
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=3.6e-08 Score=94.35 Aligned_cols=149 Identities=19% Similarity=0.275 Sum_probs=80.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCc----hhH-----------------
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP----KKL----------------- 172 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p----~~~----------------- 172 (296)
..+||+|||||.|||.||+.+++. .+|+|+||.....-++.+..||.+...+..+ ...
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v 82 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAA 82 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHH
Confidence 457999999999999999999986 9999999432211112223355443222111 111
Q ss_pred HHHhhhhHHHhhcccccCccccccCCHH-------------------HHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE
Q psy7665 173 FHRASLLNEEATTSDNFGFHMKKSFTWK-------------------TLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233 (296)
Q Consensus 173 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 233 (296)
........+.+.++..+|+++....+.. ............+...+...+.+.+|+++....
T Consensus 83 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~~~ 162 (583)
T PRK08205 83 EIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVEFFNEFY 162 (583)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCEEEeCCE
Confidence 1111223445666777787764311100 000000001123344456666777999877643
Q ss_pred E--EE-eC----CEE---EE----cceeEEEEeCeEEEcCCCCC
Q psy7665 234 V--FV-DK----HRV---KF----AGEERTVSAQNFIIAVGGRP 263 (296)
Q Consensus 234 ~--~~-~~----~~v---~v----~g~~~~~~a~~vV~AtG~~p 263 (296)
. .. ++ ..+ .. +++...+.|+.||+|||...
T Consensus 163 v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 163 VLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred EEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 2 12 22 222 21 34345689999999999743
No 148
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.86 E-value=1.9e-08 Score=97.18 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=31.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+|||||.||+.||+.+++.|.+|+|+|+
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK 36 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSL 36 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeC
Confidence 567999999999999999999999999999994
No 149
>PLN02815 L-aspartate oxidase
Probab=98.86 E-value=2.8e-08 Score=94.85 Aligned_cols=33 Identities=36% Similarity=0.484 Sum_probs=30.5
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
+..+||+|||+|.|||.||+.+++.| +|+|+||
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK 59 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITK 59 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEEC
Confidence 45689999999999999999999999 9999993
No 150
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.86 E-value=4.8e-09 Score=96.44 Aligned_cols=108 Identities=22% Similarity=0.367 Sum_probs=72.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
...+|+||||||+|+.+|..|++.|++|+++| +.+ ..||.. .||++.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e--~~~------~~GGll-------------------------~yGIP~ 168 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFE--RVA------LDGGLL-------------------------LYGIPD 168 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeC--CcC------CCceeE-------------------------EecCch
Confidence 45799999999999999999999999999999 677 778843 233321
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCCCc
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGAR 272 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G~~ 272 (296)
. . +. .++.....+.|+..|++++.+... ...++... -.-.+|+|++|+|+ .|+..++||.+
T Consensus 169 ~-----k-l~-------k~i~d~~i~~l~~~Gv~~~~~~~v---G~~it~~~--L~~e~Dav~l~~G~~~~~~l~i~g~d 230 (457)
T COG0493 169 F-----K-LP-------KDILDRRLELLERSGVEFKLNVRV---GRDITLEE--LLKEYDAVFLATGAGKPRPLDIPGED 230 (457)
T ss_pred h-----h-cc-------chHHHHHHHHHHHcCeEEEEcceE---CCcCCHHH--HHHhhCEEEEeccccCCCCCCCCCcC
Confidence 0 0 00 111222345667779888765421 11222211 22345999999996 78888899986
No 151
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=1.7e-08 Score=96.53 Aligned_cols=32 Identities=31% Similarity=0.512 Sum_probs=29.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--CcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMN--KKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~ 146 (296)
.+||+|||||.||+.||+.+++.| .+|+|+||
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK 36 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAK 36 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEec
Confidence 569999999999999999999874 89999993
No 152
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.85 E-value=7.1e-09 Score=96.94 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=58.4
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...+.
T Consensus 405 ~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 466 (475)
T PRK06327 405 FVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAAL 466 (475)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999876653
No 153
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.85 E-value=3.5e-08 Score=94.18 Aligned_cols=148 Identities=20% Similarity=0.188 Sum_probs=79.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcc--cccCCeeeccC--CC-----------------ch
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTV--WGLGGTCVNVG--CI-----------------PK 170 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~--~~~GG~~~~~~--~~-----------------p~ 170 (296)
..+||+|||||.||+.||+.+++. |.+|+|+| +....+++ +.-||.+...+ .. |.
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lve--K~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~ 79 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALIS--KVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQD 79 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEE--ccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHH
Confidence 357999999999999999999987 58999999 44433332 22255442211 11 11
Q ss_pred hHHHHhhhhHHHhhcccccCccccccCC----HHH-----HHH---HHHHHHHHHHHHHHHHHHH-CCcEEEcceE--E-
Q psy7665 171 KLFHRASLLNEEATTSDNFGFHMKKSFT----WKT-----LVD---NVQKYIRNLNNNYEKELEK-NKIDYFNAKA--V- 234 (296)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~-----~~~---~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~- 234 (296)
.+........+.+.++..+|+++....+ ... ..+ .....-..+...+...+.+ .+++++.... .
T Consensus 80 lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~L 159 (580)
T TIGR01176 80 VVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDL 159 (580)
T ss_pred HHHHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEE
Confidence 1122222344455667777776642110 000 000 0000112233334444444 3788776532 1
Q ss_pred EEeCCEEE----E---cceeEEEEeCeEEEcCCCCC
Q psy7665 235 FVDKHRVK----F---AGEERTVSAQNFIIAVGGRP 263 (296)
Q Consensus 235 ~~~~~~v~----v---~g~~~~~~a~~vV~AtG~~p 263 (296)
..+...+. + ++....+.|+.||+|||...
T Consensus 160 i~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 160 LVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred EeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 12333332 1 34446789999999999633
No 154
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.85 E-value=7.1e-09 Score=96.77 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=58.8
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.++..+.
T Consensus 395 ~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~ 456 (471)
T PRK06467 395 MTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAE 456 (471)
T ss_pred EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999987765
No 155
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.85 E-value=3.2e-08 Score=95.06 Aligned_cols=33 Identities=39% Similarity=0.543 Sum_probs=30.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--CCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~ 146 (296)
..+||+|||||.||+.||+.+++. |.+|+|+||
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK 44 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEK 44 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 567999999999999999999998 999999994
No 156
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.85 E-value=7.3e-09 Score=96.81 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=58.6
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...++
T Consensus 402 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 463 (472)
T PRK05976 402 FVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAAL 463 (472)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999876664
No 157
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.85 E-value=2.2e-08 Score=94.32 Aligned_cols=30 Identities=47% Similarity=0.704 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
|||+|||||++|+++|..+++.|.+|+|+|
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie 30 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLT 30 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEe
Confidence 699999999999999999999999999999
No 158
>PLN02661 Putative thiazole synthesis
Probab=98.84 E-value=3.7e-08 Score=87.03 Aligned_cols=36 Identities=36% Similarity=0.543 Sum_probs=32.1
Q ss_pred CccccEEEECCChHHHHHHHHHHhC-CCcEEEEeccCCC
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASM-NKKVALFDFVTPS 150 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE~~~~~ 150 (296)
..++||+|||||++|+.||++|++. |++|+|+| +..
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viE--k~~ 126 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIE--QSV 126 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEe--cCc
Confidence 3568999999999999999999986 89999999 555
No 159
>PRK08275 putative oxidoreductase; Provisional
Probab=98.84 E-value=3.8e-08 Score=93.66 Aligned_cols=148 Identities=22% Similarity=0.296 Sum_probs=78.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCC-Cccccc--CCeee--ccC-CCchhH-------------
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQH-GTVWGL--GGTCV--NVG-CIPKKL------------- 172 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~-g~~~~~--GG~~~--~~~-~~p~~~------------- 172 (296)
..+||+|||||.||+.||+.+++. |.+|+|+|| .... +.+... ||.+. ..+ .-|..+
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK--~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d 85 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEK--ANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVD 85 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeC--CCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCcc
Confidence 568999999999999999999987 689999994 3321 111111 12111 000 111111
Q ss_pred ----HHHhhhhHHHhhcccccCcccccc----CCHHHHHH---HH--HHHHHHHHHHHHHHHHHCCcEEEcceEE--EE-
Q psy7665 173 ----FHRASLLNEEATTSDNFGFHMKKS----FTWKTLVD---NV--QKYIRNLNNNYEKELEKNKIDYFNAKAV--FV- 236 (296)
Q Consensus 173 ----~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~- 236 (296)
........+.+.++..+|+++... +....... +. ......+...+...+++.+++++..... ..
T Consensus 86 ~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~ 165 (554)
T PRK08275 86 QKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLT 165 (554)
T ss_pred HHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEE
Confidence 111222344556666777766431 11100000 00 0011233445556667779998776432 22
Q ss_pred e-CCEE---EE----cceeEEEEeCeEEEcCCCCC
Q psy7665 237 D-KHRV---KF----AGEERTVSAQNFIIAVGGRP 263 (296)
Q Consensus 237 ~-~~~v---~v----~g~~~~~~a~~vV~AtG~~p 263 (296)
+ ...+ .+ ++....+.++.||+|||...
T Consensus 166 ~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 2 2222 22 34335689999999999754
No 160
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.83 E-value=3.7e-08 Score=92.41 Aligned_cols=146 Identities=17% Similarity=0.231 Sum_probs=77.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCc-c-cccCCeeecc--CCC-----------------chhHH
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGT-V-WGLGGTCVNV--GCI-----------------PKKLF 173 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~-~-~~~GG~~~~~--~~~-----------------p~~~~ 173 (296)
.+||+|||+|.||+.||+.+++.|. |+|+| +.+..+. + +.-||.+... ... |....
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lle--K~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~ 78 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLS--KAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVE 78 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEE--ccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHH
Confidence 3699999999999999999999998 99999 4432222 1 1224433211 011 11111
Q ss_pred HHhhhhHHHhhcccccCccccccCC------------HHHHHHHHHHHHHHHHHHHHHHHHH-CCcEEEcceEEE--E-e
Q psy7665 174 HRASLLNEEATTSDNFGFHMKKSFT------------WKTLVDNVQKYIRNLNNNYEKELEK-NKIDYFNAKAVF--V-D 237 (296)
Q Consensus 174 ~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~--~-~ 237 (296)
.......+.+.++..+|+++....+ +.............+...+.+.+++ .+++++...... . +
T Consensus 79 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~ 158 (488)
T TIGR00551 79 FVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIE 158 (488)
T ss_pred HHHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeecc
Confidence 1222334455666667776642100 0000000000112333445555665 589987764321 2 2
Q ss_pred CCEEE---E-c-ceeEEEEeCeEEEcCCCCC
Q psy7665 238 KHRVK---F-A-GEERTVSAQNFIIAVGGRP 263 (296)
Q Consensus 238 ~~~v~---v-~-g~~~~~~a~~vV~AtG~~p 263 (296)
...+. + + ++...+.++.||+|||...
T Consensus 159 ~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 159 TGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 33332 2 2 3335689999999999744
No 161
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.83 E-value=1.6e-08 Score=91.44 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCC
Q psy7665 117 DLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPS 150 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~ 150 (296)
||+|||||++|+++|..|++. |++|+++| +.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle--~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIE--AGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEe--CCC
Confidence 799999999999999999987 99999999 544
No 162
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.83 E-value=9.8e-09 Score=95.68 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=58.3
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+...++
T Consensus 390 ~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 451 (460)
T PRK06292 390 FVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALR 451 (460)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999876654
No 163
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.83 E-value=2.1e-08 Score=91.55 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+||||||+|+++|..|++.|++|+|+|+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~ 33 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 36999999999999999999999999999993
No 164
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.83 E-value=9.1e-09 Score=95.57 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=56.7
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccC-cCCCCChHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDAL-IGIHPTCAEAISLSW 62 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~-i~~~pt~~e~l~v~~ 62 (296)
.+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|... +++|||++|.+...+
T Consensus 388 ~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~ 449 (452)
T TIGR03452 388 FCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENAL 449 (452)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHH
Confidence 3789999999999999999999999999999999999999999986 789999999887654
No 165
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=3.7e-08 Score=93.56 Aligned_cols=32 Identities=34% Similarity=0.433 Sum_probs=30.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+|||+|.||+.||+.+ +.|.+|+|+||
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK 37 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSK 37 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEc
Confidence 567999999999999999999 99999999994
No 166
>PRK07190 hypothetical protein; Provisional
Probab=98.82 E-value=3.6e-08 Score=92.31 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=30.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr 36 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDK 36 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeC
Confidence 347999999999999999999999999999993
No 167
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.82 E-value=2.7e-08 Score=91.39 Aligned_cols=33 Identities=27% Similarity=0.574 Sum_probs=31.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+|||||++|+++|..|++.|++|+|+|+
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 49 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEA 49 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEec
Confidence 457999999999999999999999999999993
No 168
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.82 E-value=2.5e-08 Score=90.80 Aligned_cols=33 Identities=36% Similarity=0.492 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
+.+||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAP 36 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEec
Confidence 457999999999999999999999999999993
No 169
>PTZ00058 glutathione reductase; Provisional
Probab=98.81 E-value=9.1e-09 Score=97.44 Aligned_cols=59 Identities=36% Similarity=0.419 Sum_probs=56.2
Q ss_pred cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665 3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS 61 (296)
Q Consensus 3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~ 61 (296)
+|+|+|+++++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...
T Consensus 498 ~Kli~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~ 556 (561)
T PTZ00058 498 LKLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTM 556 (561)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999987554
No 170
>PRK11445 putative oxidoreductase; Provisional
Probab=98.81 E-value=2.5e-08 Score=89.63 Aligned_cols=29 Identities=38% Similarity=0.549 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
|||+||||||+|+++|..|++. ++|+|+|
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE 30 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAID 30 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEE
Confidence 6999999999999999999999 9999999
No 171
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.81 E-value=1.9e-07 Score=84.35 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
+||+|||||.+|+++|++|++.|++|+|+|+
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~ 31 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIER 31 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 5899999999999999999999999999994
No 172
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.81 E-value=1.8e-07 Score=89.06 Aligned_cols=42 Identities=31% Similarity=0.572 Sum_probs=36.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV 163 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~ 163 (296)
.++||+|||+|.+|+++|+.+++.|.+|+||| +.. ..||++.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liE--k~~------~~gG~~~ 46 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVE--KQD------KVGGSTA 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCC------CCCceec
Confidence 46799999999999999999999999999999 555 4566553
No 173
>PRK06184 hypothetical protein; Provisional
Probab=98.80 E-value=2.6e-08 Score=93.87 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~ 34 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEK 34 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 47999999999999999999999999999993
No 174
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.80 E-value=6.9e-08 Score=89.39 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=83.2
Q ss_pred cceeeeeeeccccCCccchhhhccCcceeecc-----ccC-CCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCC
Q psy7665 76 HTPYLVLAKARFLLPTLECQEVYHDGRFYDYL-----DNN-FQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTP 149 (296)
Q Consensus 76 ~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~ 149 (296)
..+|.+++|+|+.+..++... .......++. ... ......+|+|||||+.|+++|..|++.|.+|++++ +.
T Consensus 104 ~~yd~lviAtGs~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~--~~ 180 (438)
T PRK13512 104 ESYDKLILSPGASANSLGFES-DITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIH--RS 180 (438)
T ss_pred eecCEEEECCCCCCCCCCCCC-CCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEe--cc
Confidence 478999999998875544211 1111111110 000 00123489999999999999999999999999999 43
Q ss_pred CCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEE
Q psy7665 150 SQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229 (296)
Q Consensus 150 ~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 229 (296)
+ .+.. ..+ ..+...+...+++.|++++
T Consensus 181 ~------~l~~-----------------------------------~~d------------~~~~~~l~~~l~~~gI~i~ 207 (438)
T PRK13512 181 D------KINK-----------------------------------LMD------------ADMNQPILDELDKREIPYR 207 (438)
T ss_pred c------ccch-----------------------------------hcC------------HHHHHHHHHHHHhcCCEEE
Confidence 3 1000 000 1122334556778899998
Q ss_pred cceE-EEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665 230 NAKA-VFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYP 266 (296)
Q Consensus 230 ~~~~-~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p 266 (296)
.+.. ...+...+++ ++ ..+.+|.|++|+|.+|+..
T Consensus 208 ~~~~v~~i~~~~v~~~~g--~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 208 LNEEIDAINGNEVTFKSG--KVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred ECCeEEEEeCCEEEECCC--CEEEeCEEEECcCCCcChH
Confidence 6543 3344456666 45 4689999999999988753
No 175
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.80 E-value=7.6e-09 Score=97.19 Aligned_cols=59 Identities=42% Similarity=0.566 Sum_probs=54.5
Q ss_pred cceeecC-CCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665 3 LPKLGGS-EVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS 61 (296)
Q Consensus 3 ~~~~~~~-~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~ 61 (296)
+|+++|+ +|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...
T Consensus 418 ~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~ 477 (499)
T PTZ00052 418 AKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFMNL 477 (499)
T ss_pred EEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhEEE
Confidence 5888997 4899999999999999999999999999999999999999999999976433
No 176
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.80 E-value=1.5e-08 Score=92.98 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=34.0
Q ss_pred cccEEEECCChHHHHHHHHHH-hCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 115 DYDLCVIGGGSGGISAAKEAA-SMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~-~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
...|+||||||||++||.+|+ +.|++|+|+| +.+ .+||.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfE--k~p------~pgGLv 79 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFE--KLP------NPYGLI 79 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEe--cCC------CCccEE
Confidence 358999999999999999865 6799999999 677 677754
No 177
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.80 E-value=3.1e-08 Score=93.97 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=29.7
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
+..+||+|||+|.||+.||+.++ .|.+|+|+||
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK 39 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITK 39 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEc
Confidence 45689999999999999999996 4999999994
No 178
>KOG0399|consensus
Probab=98.80 E-value=1.8e-08 Score=97.93 Aligned_cols=110 Identities=19% Similarity=0.363 Sum_probs=75.2
Q ss_pred CCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF 191 (296)
Q Consensus 112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 191 (296)
...++.|.|||.||+|+.||-+|-+.|+.|+|+| +.+ .+|| +..||+
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vye--r~d------r~gg-------------------------ll~ygi 1828 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYE--RSD------RVGG-------------------------LLMYGI 1828 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEE--ecC------CcCc-------------------------eeeecC
Confidence 4467899999999999999999999999999999 777 8888 344555
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCC
Q psy7665 192 HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPG 270 (296)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G 270 (296)
+.- ++|.... ..-.+.+...|+++++++. +.++ +..+. -.-..|+||+|+|+ .|+-.++||
T Consensus 1829 pnm-kldk~vv------------~rrv~ll~~egi~f~tn~e--igk~-vs~d~--l~~~~daiv~a~gst~prdlpv~g 1890 (2142)
T KOG0399|consen 1829 PNM-KLDKFVV------------QRRVDLLEQEGIRFVTNTE--IGKH-VSLDE--LKKENDAIVLATGSTTPRDLPVPG 1890 (2142)
T ss_pred Ccc-chhHHHH------------HHHHHHHHhhCceEEeecc--cccc-ccHHH--HhhccCeEEEEeCCCCCcCCCCCC
Confidence 431 1111101 1112445666999987542 2222 32233 33457999999997 788788998
Q ss_pred Cc
Q psy7665 271 AR 272 (296)
Q Consensus 271 ~~ 272 (296)
-+
T Consensus 1891 rd 1892 (2142)
T KOG0399|consen 1891 RD 1892 (2142)
T ss_pred cc
Confidence 65
No 179
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.80 E-value=4e-08 Score=91.06 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=31.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q psy7665 117 DLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHG 153 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~~~~~~g 153 (296)
||||||||.+|++||+.++++| .+|+|+| +.+..|
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlE--k~~~~g 36 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLE--KMPVIG 36 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEe--cCCCCC
Confidence 7999999999999999999999 9999999 555433
No 180
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.79 E-value=6.2e-08 Score=88.57 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=81.4
Q ss_pred cceeeeeeeccccCCccchhhhcc--Ccc---eeec--cccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccC
Q psy7665 76 HTPYLVLAKARFLLPTLECQEVYH--DGR---FYDY--LDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVT 148 (296)
Q Consensus 76 ~~p~~v~~~~~~~~~~~~~~~~~~--~~~---~~~~--~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~ 148 (296)
+.+|.+++|+|+.+..++...... ... ..+. +... .....+|+|||||+.|+++|..|++.|.+|+|+| +
T Consensus 99 ~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~--~ 175 (396)
T PRK09754 99 WHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREV-LQPERSVVIVGAGTIGLELAASATQRRCKVTVIE--L 175 (396)
T ss_pred EEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHH-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEe--c
Confidence 678999999998765444322111 111 1111 1111 0123489999999999999999999999999999 4
Q ss_pred CCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEE
Q psy7665 149 PSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDY 228 (296)
Q Consensus 149 ~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 228 (296)
.+ .+.+. ... ......+...+++.||++
T Consensus 176 ~~------~~l~~-------------------------------------------~~~---~~~~~~l~~~l~~~GV~i 203 (396)
T PRK09754 176 AA------TVMGR-------------------------------------------NAP---PPVQRYLLQRHQQAGVRI 203 (396)
T ss_pred CC------cchhh-------------------------------------------hcC---HHHHHHHHHHHHHCCCEE
Confidence 33 11110 000 111223445567789999
Q ss_pred EcceE-EEE-eCCEEE--E-cceeEEEEeCeEEEcCCCCCCC
Q psy7665 229 FNAKA-VFV-DKHRVK--F-AGEERTVSAQNFIIAVGGRPTY 265 (296)
Q Consensus 229 ~~~~~-~~~-~~~~v~--v-~g~~~~~~a~~vV~AtG~~p~~ 265 (296)
+.+.. ... ....+. + ++ ..+.||.||+|+|.+|+.
T Consensus 204 ~~~~~V~~i~~~~~~~v~l~~g--~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 204 LLNNAIEHVVDGEKVELTLQSG--ETLQADVVIYGIGISAND 243 (396)
T ss_pred EeCCeeEEEEcCCEEEEEECCC--CEEECCEEEECCCCChhh
Confidence 87643 222 223333 3 45 568999999999998764
No 181
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.78 E-value=1.7e-08 Score=94.08 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=58.3
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+|+|++|++|||+|++|++++|+|+.++++|+.+++.++|.+++++|||++|.+...+.
T Consensus 392 ~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 453 (462)
T PRK06416 392 FVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAAL 453 (462)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999998876654
No 182
>PRK07846 mycothione reductase; Reviewed
Probab=98.78 E-value=1.7e-08 Score=93.77 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=57.1
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCc-CCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALI-GIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i-~~~pt~~e~l~v~~~ 63 (296)
.+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.... ++|||++|.++..++
T Consensus 385 ~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~ 447 (451)
T PRK07846 385 FVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENALL 447 (451)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999865 799999999876654
No 183
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.78 E-value=5.6e-08 Score=88.95 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--CcEEEEec
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMN--KKVALFDF 146 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~ 146 (296)
|||+||||||+|+++|..|++.| .+|+|+|+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~ 34 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDA 34 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 69999999999999999999996 99999993
No 184
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.78 E-value=4.8e-08 Score=92.83 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er 41 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLER 41 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999999999993
No 185
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.77 E-value=1.6e-08 Score=99.81 Aligned_cols=161 Identities=19% Similarity=0.252 Sum_probs=98.2
Q ss_pred CCCCChHHHHHHHHHhhcCCCCcee----------eccceeeeeeeccccCCccchhhhccCc--cee---ec--cccCC
Q psy7665 49 GIHPTCAEAISLSWIKGYNIEPEVI----------KLHTPYLVLAKARFLLPTLECQEVYHDG--RFY---DY--LDNNF 111 (296)
Q Consensus 49 ~~~pt~~e~l~v~~~~~~~~~~~~~----------~~~~p~~v~~~~~~~~~~~~~~~~~~~~--~~~---~~--~~~~~ 111 (296)
...+.+.+..++.+++++.++.-.. ..+.+|.+|+|+|+.+..++.++..... ... +. +...
T Consensus 58 ~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~- 136 (785)
T TIGR02374 58 LNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAM- 136 (785)
T ss_pred CCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHH-
Confidence 3344455666777777765432111 2467999999999877666555433211 111 11 1100
Q ss_pred CCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF 191 (296)
Q Consensus 112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 191 (296)
.....+++|||||+.|+++|..|++.|.+|+|+| +.+ .+
T Consensus 137 ~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~--~~~------~l--------------------------------- 175 (785)
T TIGR02374 137 AQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIH--HAP------GL--------------------------------- 175 (785)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEc--cCC------ch---------------------------------
Confidence 0123479999999999999999999999999999 333 00
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-E-EEeCC---EEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665 192 HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-V-FVDKH---RVKF-AGEERTVSAQNFIIAVGGRPTY 265 (296)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~---~v~v-~g~~~~~~a~~vV~AtG~~p~~ 265 (296)
+...+. ......+...+++.||+++.+.. . ..... .+.+ +| ..+.+|.||+|+|.+|+.
T Consensus 176 ----------l~~~ld---~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG--~~i~~D~Vi~a~G~~Pn~ 240 (785)
T TIGR02374 176 ----------MAKQLD---QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDG--SSLEADLIVMAAGIRPND 240 (785)
T ss_pred ----------hhhhcC---HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCC--CEEEcCEEEECCCCCcCc
Confidence 000011 11123345566778999987653 2 22221 2444 55 579999999999998865
Q ss_pred C
Q psy7665 266 P 266 (296)
Q Consensus 266 p 266 (296)
.
T Consensus 241 ~ 241 (785)
T TIGR02374 241 E 241 (785)
T ss_pred H
Confidence 3
No 186
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.77 E-value=2e-08 Score=93.67 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=59.7
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHh
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIK 64 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~ 64 (296)
.+|+++|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||.+|.+....+.
T Consensus 388 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~~ 450 (463)
T TIGR02053 388 FIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQT 450 (463)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999888764
No 187
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.77 E-value=1.8e-08 Score=94.32 Aligned_cols=61 Identities=34% Similarity=0.551 Sum_probs=56.5
Q ss_pred cceeec-CCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 3 LPKLGG-SEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 3 ~~~~~~-~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
+|+|++ ++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...++
T Consensus 408 ~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~ 469 (484)
T TIGR01438 408 AKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSV 469 (484)
T ss_pred EEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhh
Confidence 678885 5799999999999999999999999999999999999999999999999877764
No 188
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.76 E-value=1.4e-07 Score=89.94 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=32.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
..+||+|||+|++|+++|+.+++.|.+|+||| +..
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llE--k~~ 40 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVE--KAP 40 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEe--CCC
Confidence 46799999999999999999999999999999 555
No 189
>PRK08013 oxidoreductase; Provisional
Probab=98.75 E-value=5.5e-08 Score=89.00 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+||||||+|+++|..|++.|++|+|+|+
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~ 34 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQ 34 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeC
Confidence 47999999999999999999999999999993
No 190
>KOG2311|consensus
Probab=98.75 E-value=4.8e-08 Score=87.60 Aligned_cols=33 Identities=42% Similarity=0.681 Sum_probs=31.1
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+..|||||||||+|||+||..+++.|.+++++.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT 58 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLT 58 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEee
Confidence 467899999999999999999999999999998
No 191
>PRK07588 hypothetical protein; Provisional
Probab=98.75 E-value=8.9e-08 Score=87.34 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
||+|||||++|+++|..|++.|++|+|+|+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~ 31 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIER 31 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeC
Confidence 799999999999999999999999999994
No 192
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.75 E-value=1.2e-07 Score=89.43 Aligned_cols=31 Identities=26% Similarity=0.421 Sum_probs=28.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+|||+|.||+.||..+++ |.+|+|+||
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK 33 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITK 33 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEec
Confidence 4699999999999999999976 999999994
No 193
>PRK13748 putative mercuric reductase; Provisional
Probab=98.74 E-value=2.6e-08 Score=95.18 Aligned_cols=62 Identities=18% Similarity=0.091 Sum_probs=58.4
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+|+|++|++|||+|++|++++|+|+.++++|+.+.+.++|.+++++|||++|.+...+.
T Consensus 486 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 547 (561)
T PRK13748 486 FIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQ 547 (561)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999998876664
No 194
>PRK09126 hypothetical protein; Provisional
Probab=98.74 E-value=4.1e-08 Score=89.50 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
+.+||+||||||+|+++|..|+++|++|+|+|+
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 357999999999999999999999999999993
No 195
>PRK06126 hypothetical protein; Provisional
Probab=98.73 E-value=1.3e-07 Score=90.06 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=30.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..+||+||||||+|+++|..|++.|++|+|+|
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viE 37 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVE 37 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 45799999999999999999999999999999
No 196
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.72 E-value=1.9e-07 Score=88.62 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=29.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
+..+||+|||+|.||+.||+.+++. .+|+|+||
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK 38 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSK 38 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEec
Confidence 3567999999999999999999986 89999994
No 197
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.72 E-value=2.3e-07 Score=88.81 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=32.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
+..+||+|||+|.+|+.+|+.++++|.+|+||| +..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~ie--k~~ 45 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVE--KDP 45 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEe--cCC
Confidence 356899999999999999999999999999999 555
No 198
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.72 E-value=6.2e-08 Score=88.32 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=31.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+|||||++|+++|..|++.|++|+|+|+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~ 36 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEH 36 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcC
Confidence 458999999999999999999999999999993
No 199
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.72 E-value=1.3e-07 Score=87.22 Aligned_cols=133 Identities=21% Similarity=0.253 Sum_probs=80.7
Q ss_pred eeeeeeeccccCCccchhhhccC--cceeeccc-----cCC-CCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCC
Q psy7665 78 PYLVLAKARFLLPTLECQEVYHD--GRFYDYLD-----NNF-QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTP 149 (296)
Q Consensus 78 p~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~-~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~ 149 (296)
+|.+|+|+|+.+..++.++.+.. ........ ... .....+|+|||||++|+++|..|++.|.+|++++ +.
T Consensus 92 yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~--~~ 169 (427)
T TIGR03385 92 YDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIH--RS 169 (427)
T ss_pred CCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEE--CC
Confidence 89999999987765555443211 11111100 000 0123489999999999999999999999999999 33
Q ss_pred CCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEE
Q psy7665 150 SQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229 (296)
Q Consensus 150 ~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 229 (296)
+ .+... ..+ ..+...+...+++.||+++
T Consensus 170 ~------~~~~~----------------------------------~~~------------~~~~~~~~~~l~~~gV~v~ 197 (427)
T TIGR03385 170 E------RILNK----------------------------------LFD------------EEMNQIVEEELKKHEINLR 197 (427)
T ss_pred c------ccCcc----------------------------------ccC------------HHHHHHHHHHHHHcCCEEE
Confidence 3 11000 000 1112223455677799998
Q ss_pred cceE-EEEeC-CEE-EE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665 230 NAKA-VFVDK-HRV-KF-AGEERTVSAQNFIIAVGGRPTYP 266 (296)
Q Consensus 230 ~~~~-~~~~~-~~v-~v-~g~~~~~~a~~vV~AtG~~p~~p 266 (296)
.+.. ..... ..+ .. ++ .++.+|.||+|+|.+|..+
T Consensus 198 ~~~~v~~i~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 198 LNEEVDSIEGEERVKVFTSG--GVYQADMVILATGIKPNSE 236 (427)
T ss_pred eCCEEEEEecCCCEEEEcCC--CEEEeCEEEECCCccCCHH
Confidence 6543 22222 222 33 55 5699999999999987653
No 200
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.72 E-value=5.1e-08 Score=88.85 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+||||||+|+++|..|++.|++|+|+|+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~ 33 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLER 33 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Confidence 36999999999999999999999999999994
No 201
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.72 E-value=9.4e-08 Score=87.19 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+|||||++|+++|..|++.|++|+|+|+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~ 33 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEEC
Confidence 36999999999999999999999999999993
No 202
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.70 E-value=2.1e-08 Score=67.59 Aligned_cols=36 Identities=33% Similarity=0.567 Sum_probs=31.8
Q ss_pred EECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeee
Q psy7665 120 VIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV 163 (296)
Q Consensus 120 VIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~ 163 (296)
|||||++|+++|++|++.|++|+|+| +.+ .+||.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E--~~~------~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFE--KND------RLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEE--SSS------SSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEe--cCc------ccCccee
Confidence 89999999999999999999999999 777 7788663
No 203
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.70 E-value=1.4e-07 Score=89.02 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=28.6
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
+.++||+|||+|.||+.||+.++ |.+|+|+||
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK 38 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSP 38 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEEC
Confidence 45679999999999999999997 579999993
No 204
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.70 E-value=4.5e-08 Score=91.27 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=58.1
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI 63 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~ 63 (296)
.+|+++|+++++|||+|++|++|+|+|+.++++|+++++.++|.+++++||+++|.+.....
T Consensus 391 ~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~ 452 (461)
T TIGR01350 391 FVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAAL 452 (461)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999876654
No 205
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.70 E-value=2.2e-07 Score=93.11 Aligned_cols=33 Identities=42% Similarity=0.583 Sum_probs=31.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+|||||.+||.||+.+++.|.+|+|+||
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK 44 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEK 44 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence 567999999999999999999999999999994
No 206
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.70 E-value=7.9e-07 Score=81.64 Aligned_cols=45 Identities=29% Similarity=0.443 Sum_probs=35.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC--CCCcccccCCee
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS--QHGTVWGLGGTC 162 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~--~~g~~~~~GG~~ 162 (296)
+||+|||||.+|+++|++|++.|++|+|+| +.+ ..|.++..+|.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle--~~~~~~~~as~~~~g~~ 48 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFD--RHRYAAMETSFANGGQL 48 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEe--CCCCCCcCcccccCCEE
Confidence 499999999999999999999999999999 443 234444445543
No 207
>PLN02985 squalene monooxygenase
Probab=98.70 E-value=7.2e-08 Score=90.76 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=32.2
Q ss_pred CCccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+..+||+|||||++|+++|..|++.|++|+|+|+
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr 74 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIER 74 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 34678999999999999999999999999999994
No 208
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.69 E-value=1.1e-06 Score=79.70 Aligned_cols=30 Identities=37% Similarity=0.506 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+||+|||||.+|+++|++|+++|.+|+|+|
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e 30 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLE 30 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 599999999999999999999999999999
No 209
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.69 E-value=1.5e-07 Score=85.93 Aligned_cols=31 Identities=35% Similarity=0.560 Sum_probs=29.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..||+|||||++|+++|..|++.|.+|+|+|
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~E 34 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLE 34 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEe
Confidence 3589999999999999999999999999999
No 210
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.69 E-value=3e-08 Score=90.88 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+|||||++|+++|+.|+++|++|+|+|+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~ 33 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDG 33 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcC
Confidence 36999999999999999999999999999993
No 211
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.69 E-value=9.5e-08 Score=86.97 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+||||||+|+++|..|++.|++|+|+|+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcC
Confidence 36999999999999999999999999999993
No 212
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.68 E-value=6.5e-08 Score=87.75 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+||+||||||+|+++|..|++.|++|+|+|
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E 31 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFE 31 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEec
Confidence 589999999999999999999999999999
No 213
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.68 E-value=7.2e-08 Score=92.08 Aligned_cols=41 Identities=37% Similarity=0.605 Sum_probs=36.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
.+.+|+|||+||+|+.+|..|++.|++|+|+| +.+ .+||.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e--~~~------~~GG~l 176 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFE--AGP------KLGGMM 176 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe--cCC------CCCCee
Confidence 45699999999999999999999999999999 666 677744
No 214
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.68 E-value=4.5e-07 Score=86.40 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=31.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~ 54 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDD 54 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeC
Confidence 567999999999999999999999999999993
No 215
>PRK12839 hypothetical protein; Provisional
Probab=98.67 E-value=2.8e-07 Score=87.87 Aligned_cols=37 Identities=43% Similarity=0.614 Sum_probs=33.5
Q ss_pred CCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
.+..+||+|||+|.+|+.+|+.++++|.+|+|+| +..
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~ie--k~~ 41 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVE--KAS 41 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCC
Confidence 3457899999999999999999999999999999 555
No 216
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.67 E-value=1e-06 Score=82.11 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=30.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--CCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~ 146 (296)
..+||+|||||.+|+++|++|+++ |.+|+|+|+
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~ 57 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEA 57 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 567999999999999999999998 899999993
No 217
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.67 E-value=8.4e-08 Score=87.28 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
||+|||||++||++|..|++.|.+|+|+| +.+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE--~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYE--MRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEe--ccc
Confidence 79999999999999999999999999999 555
No 218
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.67 E-value=6.8e-08 Score=87.67 Aligned_cols=30 Identities=33% Similarity=0.561 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
||+|||||++|+++|..|+++|.+|+|+|+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er 30 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEA 30 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeC
Confidence 799999999999999999999999999993
No 219
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.66 E-value=3.3e-07 Score=83.61 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=30.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhC---CCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM---NKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~---G~~V~iiE~ 146 (296)
..+||+||||||+|+++|+.|+++ |.+|+|+|+
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 347999999999999999999998 999999993
No 220
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.66 E-value=3.4e-07 Score=87.87 Aligned_cols=29 Identities=34% Similarity=0.538 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 118 LCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 118 VvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
|+|||+|.||+.||+.+++.|.+|+|+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK 29 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSY 29 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEe
Confidence 69999999999999999999999999993
No 221
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.65 E-value=2.2e-07 Score=92.06 Aligned_cols=157 Identities=12% Similarity=0.132 Sum_probs=95.0
Q ss_pred CChHHHHHHHHHhhcCC---CCc--ee-----eccceeeeeeeccccCCccchhhhccCc-----ceeeccc--cCCCCc
Q psy7665 52 PTCAEAISLSWIKGYNI---EPE--VI-----KLHTPYLVLAKARFLLPTLECQEVYHDG-----RFYDYLD--NNFQTY 114 (296)
Q Consensus 52 pt~~e~l~v~~~~~~~~---~~~--~~-----~~~~p~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~ 114 (296)
+.+.+..++.+++++.+ +++ .+ ..+.+|.+|+|+|+.+..++.++..... .+.+... .. ...
T Consensus 66 ~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~-~~~ 144 (847)
T PRK14989 66 EGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEAC-ARR 144 (847)
T ss_pred HHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHH-Hhc
Confidence 33444556666665433 222 11 2467899999999877665555433221 1111111 00 012
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK 194 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (296)
...++|||||+.|+++|..|++.|.+|+|+| +.+ .
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe--~~~------~------------------------------------- 179 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIE--FAP------M------------------------------------- 179 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEe--ccc------c-------------------------------------
Confidence 3479999999999999999999999999999 332 0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE-EEe--C--C--EEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665 195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV-FVD--K--H--RVKF-AGEERTVSAQNFIIAVGGRPTY 265 (296)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~--~--~--~v~v-~g~~~~~~a~~vV~AtG~~p~~ 265 (296)
+ +...++ ......+...+++.||+++.+... .+. . . .+.. +| ..+.+|.||+|+|.+|+.
T Consensus 180 --l----l~~~ld---~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG--~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 180 --L----MAEQLD---QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG--SELEVDFIVFSTGIRPQD 247 (847)
T ss_pred --c----hhhhcC---HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC--CEEEcCEEEECCCcccCc
Confidence 0 000011 111233456678889999877532 221 1 1 2333 55 579999999999998875
No 222
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.65 E-value=2.9e-07 Score=83.82 Aligned_cols=32 Identities=41% Similarity=0.575 Sum_probs=30.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..+||+|||||++|+++|..|++.|.+|+|+|
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE 37 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVA 37 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEe
Confidence 45799999999999999999999999999999
No 223
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.64 E-value=3.2e-07 Score=94.19 Aligned_cols=36 Identities=39% Similarity=0.531 Sum_probs=33.0
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
+.++||||||+|.||+.||+.+++.|.+|+|+| +..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlE--K~~ 442 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLE--KEA 442 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEE--ccC
Confidence 356899999999999999999999999999999 555
No 224
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.64 E-value=1.4e-06 Score=79.98 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
||+|||||.+|+++|++|++.|.+|+|+|+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~ 31 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDR 31 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 799999999999999999999999999993
No 225
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.64 E-value=1.5e-07 Score=85.44 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMN-KKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~ 146 (296)
||+||||||+|+++|..|++.| ++|+|+|+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~ 31 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeC
Confidence 7999999999999999999999 99999993
No 226
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.64 E-value=7.5e-07 Score=80.68 Aligned_cols=32 Identities=38% Similarity=0.380 Sum_probs=30.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..+||+|||||.+|+++|++|++.|++|+|+|
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie 33 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLD 33 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 35799999999999999999999999999999
No 227
>PRK07045 putative monooxygenase; Reviewed
Probab=98.63 E-value=8e-08 Score=87.54 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=30.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+||||||+|+++|..|+++|++|+|+|+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVER 36 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 457999999999999999999999999999993
No 228
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.62 E-value=6e-07 Score=84.87 Aligned_cols=49 Identities=43% Similarity=0.607 Sum_probs=38.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
..+||+|||||.|||.||..++++|.+|+|+||....+-.+.+..||.+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~ 53 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGIN 53 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhccccc
Confidence 5689999999999999999999999999999965444323333335554
No 229
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.61 E-value=3.6e-07 Score=72.35 Aligned_cols=129 Identities=19% Similarity=0.258 Sum_probs=66.7
Q ss_pred EEECCChHHHHHHHHHHhC-----CCcEEEEeccCCCCCCcccccCCeeeccC------CCchhHHHH-hhhh-HHHhhc
Q psy7665 119 CVIGGGSGGISAAKEAASM-----NKKVALFDFVTPSQHGTVWGLGGTCVNVG------CIPKKLFHR-ASLL-NEEATT 185 (296)
Q Consensus 119 vVIGgG~aG~~aA~~l~~~-----G~~V~iiE~~~~~~~g~~~~~GG~~~~~~------~~p~~~~~~-~~~~-~~~~~~ 185 (296)
+|||||++|++++.+|.+. ..+|+||| +.+ . ..|+.|.... ..|...+.. .... .....|
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd--~~~-~----G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~W 73 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFD--PSP-F----GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDW 73 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEc--CCC-c----cccccCCCCCChHHhhcccccccccccccCCCCHHHH
Confidence 5999999999999999987 46899999 432 1 1133442211 011111111 0000 111111
Q ss_pred ccccC------ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEE--EcceEEEE----eCCEEEE-cceeEEEEe
Q psy7665 186 SDNFG------FHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDY--FNAKAVFV----DKHRVKF-AGEERTVSA 252 (296)
Q Consensus 186 ~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~----~~~~v~v-~g~~~~~~a 252 (296)
+..-+ +.....+....+..|++...+.+. ..+ ..++++ +..++..+ +.+.+.+ +| ..+.|
T Consensus 74 l~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~----~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~~ 146 (156)
T PF13454_consen 74 LRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLL----ARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADG--QSIRA 146 (156)
T ss_pred HHhcCcccccccccccCCCHHHHHHHHHHHHHHHH----Hhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCC--CEEEe
Confidence 11111 121225555666666666555543 333 334444 44444322 2233444 55 67899
Q ss_pred CeEEEcCCC
Q psy7665 253 QNFIIAVGG 261 (296)
Q Consensus 253 ~~vV~AtG~ 261 (296)
|.||+|||.
T Consensus 147 d~VvLa~Gh 155 (156)
T PF13454_consen 147 DAVVLATGH 155 (156)
T ss_pred CEEEECCCC
Confidence 999999995
No 230
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.61 E-value=1.4e-06 Score=82.33 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=31.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQ 151 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~ 151 (296)
..+||||||+| +|++||+++++.|.+|+||| +...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlE--k~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVE--ATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEe--cCCC
Confidence 46799999999 99999999999999999999 5553
No 231
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.60 E-value=5.7e-07 Score=81.08 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=104.7
Q ss_pred eccceeeeeeeccccCCccchhhhccC-cce---eec------c-------ccCCCC-ccccEEEECCChHHHHHHHHHH
Q psy7665 74 KLHTPYLVLAKARFLLPTLECQEVYHD-GRF---YDY------L-------DNNFQT-YDYDLCVIGGGSGGISAAKEAA 135 (296)
Q Consensus 74 ~~~~p~~v~~~~~~~~~~~~~~~~~~~-~~~---~~~------~-------~~~~~~-~~~dVvVIGgG~aG~~aA~~l~ 135 (296)
..+.+|..+++.|+......+++.... ..+ ++. + +....+ ..-+++|+|||+.|.+.|-+|+
T Consensus 96 ~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~ 175 (405)
T COG1252 96 GEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELA 175 (405)
T ss_pred ccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHH
Confidence 357889999999988777766653321 111 111 1 111111 2247999999999999999997
Q ss_pred hCC-------------CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHH
Q psy7665 136 SMN-------------KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTL 202 (296)
Q Consensus 136 ~~G-------------~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 202 (296)
..- .+|+++| +.+ .+ .| .+
T Consensus 176 ~~~~~l~~~~~~~~~~~~V~LVe--a~p------~I---------Lp-------------------------------~~ 207 (405)
T COG1252 176 ERLHRLLKKFRVDPSELRVILVE--AGP------RI---------LP-------------------------------MF 207 (405)
T ss_pred HHHHHHhhhhcCCccccEEEEEc--cCc------hh---------cc-------------------------------CC
Confidence 642 2899999 443 00 00 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCCC--CCCCCc-----c
Q psy7665 203 VDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYP--DIPGAR-----L 273 (296)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p--~i~G~~-----~ 273 (296)
. .++.......|++.||+++.++. ...++..|++ +++ ..+.++.+|.|+|.++... ++-|.+ .
T Consensus 208 ~-------~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~-~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Gr 279 (405)
T COG1252 208 P-------PKLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGE-EEIPADTVVWAAGVRASPLLKDLSGLETDRRGR 279 (405)
T ss_pred C-------HHHHHHHHHHHHHCCCEEEcCCceEEECCCcEEEccCC-eeEecCEEEEcCCCcCChhhhhcChhhhccCCC
Confidence 1 12222344567888999988765 4477888888 442 2699999999999765432 321222 2
Q ss_pred ceeecccCCCCCCcEEEeeccC
Q psy7665 274 LRTLSLLSGVDPPTLIFLEHIS 295 (296)
Q Consensus 274 ~~~~s~~~~~~~~~~~~~~~~~ 295 (296)
-+....++....++..++++.+
T Consensus 280 l~V~~~L~~~~~~~IFa~GD~A 301 (405)
T COG1252 280 LVVNPTLQVPGHPDIFAAGDCA 301 (405)
T ss_pred EEeCCCcccCCCCCeEEEeccc
Confidence 3555678888888888887653
No 232
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.60 E-value=8.9e-07 Score=84.74 Aligned_cols=35 Identities=34% Similarity=0.581 Sum_probs=32.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
.++||||||+|++|++||++++++|.+|+|+| +..
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llE--k~~ 42 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLE--KEP 42 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEe--cCC
Confidence 56899999999999999999999999999999 555
No 233
>PRK06185 hypothetical protein; Provisional
Probab=98.60 E-value=2e-07 Score=85.45 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=31.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~ 37 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEK 37 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 567999999999999999999999999999993
No 234
>PRK07236 hypothetical protein; Provisional
Probab=98.59 E-value=5.2e-07 Score=82.15 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..||+|||||++|+++|..|++.|.+|+|+|+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 46999999999999999999999999999993
No 235
>PRK10262 thioredoxin reductase; Provisional
Probab=98.59 E-value=1e-06 Score=78.24 Aligned_cols=134 Identities=15% Similarity=0.158 Sum_probs=82.9
Q ss_pred ccceeeeeeeccccCCccchhhhcc--Ccce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 75 LHTPYLVLAKARFLLPTLECQEVYH--DGRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
.+.+|.+|+|+|..+..++.++.+. .... ....... ...+.+|+|||+|..|+++|..|++.|.+|++++ +.+
T Consensus 103 ~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~-~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~--~~~ 179 (321)
T PRK10262 103 EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGF-FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH--RRD 179 (321)
T ss_pred EEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHH-HcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEE--ECC
Confidence 4678999999998765544443221 1111 1111111 1234589999999999999999999999999999 332
Q ss_pred CCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEc
Q psy7665 151 QHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230 (296)
Q Consensus 151 ~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 230 (296)
.+ ... ..+...+.+.+++.+|+++.
T Consensus 180 ------~~---------------------------------------~~~----------~~~~~~~~~~l~~~gV~i~~ 204 (321)
T PRK10262 180 ------GF---------------------------------------RAE----------KILIKRLMDKVENGNIILHT 204 (321)
T ss_pred ------cc---------------------------------------CCC----------HHHHHHHHhhccCCCeEEEe
Confidence 00 000 01122334556777999887
Q ss_pred ceE-EEEeCC-----EEEE-c----ceeEEEEeCeEEEcCCCCCCCC
Q psy7665 231 AKA-VFVDKH-----RVKF-A----GEERTVSAQNFIIAVGGRPTYP 266 (296)
Q Consensus 231 ~~~-~~~~~~-----~v~v-~----g~~~~~~a~~vV~AtG~~p~~p 266 (296)
+.. ...... .+++ + +...++.+|.||+|+|.+|+..
T Consensus 205 ~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 205 NRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred CCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence 543 222221 2444 2 2235799999999999988654
No 236
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.59 E-value=2.3e-07 Score=85.02 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+||||||+|+++|..|++.|++|+|+|+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~ 35 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEG 35 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcC
Confidence 47999999999999999999999999999993
No 237
>PRK09897 hypothetical protein; Provisional
Probab=98.58 E-value=1.3e-06 Score=82.21 Aligned_cols=37 Identities=16% Similarity=0.409 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGT 154 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~ 154 (296)
++|+||||||+|+++|.+|.+.+ .+|+||| +...+|.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfE--p~~~~G~ 40 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFE--QADEAGV 40 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEe--cCCCCCc
Confidence 37999999999999999998865 5899999 6564443
No 238
>PRK06753 hypothetical protein; Provisional
Probab=98.58 E-value=1.7e-07 Score=84.94 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
||+|||||++|+++|..|++.|++|+|+|+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 799999999999999999999999999993
No 239
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.57 E-value=2.4e-07 Score=83.97 Aligned_cols=30 Identities=33% Similarity=0.419 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.||+|||||++||++|+.|+++|++|+|+|
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE 32 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYE 32 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 489999999999999999999999999999
No 240
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.57 E-value=2.7e-07 Score=85.15 Aligned_cols=91 Identities=24% Similarity=0.348 Sum_probs=63.9
Q ss_pred cEEEECCChHHHHHHHHHHh--------------CCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHH
Q psy7665 117 DLCVIGGGSGGISAAKEAAS--------------MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEE 182 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~--------------~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~ 182 (296)
.|+|||||++|++.|..|+. .+.+|++++ +.+ .+..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~--~~~------~ll~---------------------- 224 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLE--AGS------EVLG---------------------- 224 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEc--CCC------cccc----------------------
Confidence 79999999999999999875 478999999 433 1000
Q ss_pred hhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeCCEEEE-cceeEEEEeCeEEEcCC
Q psy7665 183 ATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDKHRVKF-AGEERTVSAQNFIIAVG 260 (296)
Q Consensus 183 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~v~v-~g~~~~~~a~~vV~AtG 260 (296)
. + . ..+...+.+.+++.||+++.++. .......+.+ +| .++.+|.+|+|+|
T Consensus 225 -------------~-----~----~---~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g--~~i~~d~vi~~~G 277 (424)
T PTZ00318 225 -------------S-----F----D---QALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDG--EVIPTGLVVWSTG 277 (424)
T ss_pred -------------c-----C----C---HHHHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCC--CEEEccEEEEccC
Confidence 0 0 0 11223345667788999986543 3455566767 55 5799999999999
Q ss_pred CCCC
Q psy7665 261 GRPT 264 (296)
Q Consensus 261 ~~p~ 264 (296)
.+|.
T Consensus 278 ~~~~ 281 (424)
T PTZ00318 278 VGPG 281 (424)
T ss_pred CCCc
Confidence 8775
No 241
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.56 E-value=7.4e-08 Score=90.24 Aligned_cols=41 Identities=34% Similarity=0.537 Sum_probs=36.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
..+||||||||++||.||.+|+++|++|+|+| +++ .+||.+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE--~~~------~~GG~a 42 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLE--KND------RVGGRA 42 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEE--ecC------CCCcce
Confidence 35799999999999999999999999999999 777 777755
No 242
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.56 E-value=6.3e-07 Score=80.00 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=68.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-CcEEEEeccCCCCCCcccccCCee----eccC--------CCch---hHHHHhhh
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHGTVWGLGGTC----VNVG--------CIPK---KLFHRASL 178 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~~~~~~g~~~~~GG~~----~~~~--------~~p~---~~~~~~~~ 178 (296)
.+|++.||.||++++.|..|.+.+ .+++.+| +.+ .-.|..|-.. +... ..|. .++.+...
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e--~~~--~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~ 77 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLE--RRP--SFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHE 77 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEE--S-S--S--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEe--cCC--CCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHH
Confidence 479999999999999999999887 8999999 433 2223332211 1110 0111 11111110
Q ss_pred hHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE---EE-eC----CEEEE---ccee
Q psy7665 179 LNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV---FV-DK----HRVKF---AGEE 247 (296)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~-~~----~~v~v---~g~~ 247 (296)
......++.. +.. .+...++.+|++-.++++ .. .+. +..++. .. +. +.|.+ +|..
T Consensus 78 ~~rl~~f~~~-~~~---~p~R~ef~dYl~Wva~~~--------~~-~v~-~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~ 143 (341)
T PF13434_consen 78 HGRLYEFYNR-GYF---FPSRREFNDYLRWVAEQL--------DN-QVR-YGSEVTSIEPDDDGDEDLFRVTTRDSDGDG 143 (341)
T ss_dssp TT-HHHHHHH---S---S-BHHHHHHHHHHHHCCG--------TT-TEE-ESEEEEEEEEEEETTEEEEEEEEEETTS-E
T ss_pred cCChhhhhhc-CCC---CCCHHHHHHHHHHHHHhC--------CC-ceE-ECCEEEEEEEecCCCccEEEEEEeecCCCe
Confidence 0000000000 000 233344444443333333 11 122 222221 11 22 45555 3556
Q ss_pred EEEEeCeEEEcCCCCCCCCCCCC-C--ccceeecc------cCCCCCCcEEEeeccC
Q psy7665 248 RTVSAQNFIIAVGGRPTYPDIPG-A--RLLRTLSL------LSGVDPPTLIFLEHIS 295 (296)
Q Consensus 248 ~~~~a~~vV~AtG~~p~~p~i~G-~--~~~~~~s~------~~~~~~~~~~~~~~~~ 295 (296)
..+.|+.||+|+|..|.+|+... . ...+++|. -.....++.+||++++
T Consensus 144 ~~~~ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQ 200 (341)
T PF13434_consen 144 ETYRARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQ 200 (341)
T ss_dssp EEEEESEEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSH
T ss_pred eEEEeCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcH
Confidence 88999999999999999997432 2 25566652 1245666788888765
No 243
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.56 E-value=1.2e-06 Score=83.47 Aligned_cols=33 Identities=42% Similarity=0.610 Sum_probs=31.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.++||||||+|.+|+.||+.+++.|.+|+|+|+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK 35 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQ 35 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 467999999999999999999999999999994
No 244
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.56 E-value=3.4e-07 Score=87.60 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=32.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
..+||||||+|.+|+.||+.++++|.+|+|+| +..
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlE--k~~ 44 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVE--KSA 44 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEE--cCC
Confidence 46799999999999999999999999999999 555
No 245
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.55 E-value=1.8e-06 Score=82.68 Aligned_cols=35 Identities=40% Similarity=0.541 Sum_probs=32.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
.++||+|||+|++|+.+|+.++++|.+|+|+| +..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~e--k~~ 49 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVE--RTE 49 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCC
Confidence 46799999999999999999999999999999 555
No 246
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.55 E-value=1.7e-06 Score=60.34 Aligned_cols=32 Identities=38% Similarity=0.584 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
+|+|||||+.|+++|..|++.|.+|++++ +.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~--~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIE--RSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEE--SSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEe--ccc
Confidence 48999999999999999999999999999 554
No 247
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.55 E-value=2.2e-06 Score=74.96 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=47.4
Q ss_pred ccceeeeeeeccccCCccchhhhcc--Ccce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 75 LHTPYLVLAKARFLLPTLECQEVYH--DGRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+.+|.+|+++|..+..+..++... .... ....... ...+.+|+|||+|++|+++|..+++.+.+|++++
T Consensus 98 ~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~-~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~ 171 (300)
T TIGR01292 98 EYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGP-FFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVH 171 (300)
T ss_pred EEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChh-hcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEE
Confidence 4678999999998655443333221 0111 1111111 1134589999999999999999999999999999
No 248
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.54 E-value=1.2e-06 Score=83.86 Aligned_cols=30 Identities=43% Similarity=0.654 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHH----hCCCcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAA----SMNKKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~----~~G~~V~iiE~ 146 (296)
||+|||||.|||.||+.++ +.|.+|+|+||
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK 34 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEK 34 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEc
Confidence 7999999999999999998 67999999994
No 249
>KOG2820|consensus
Probab=98.54 E-value=2.4e-06 Score=73.88 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=33.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHG 153 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g 153 (296)
...||+|||||.-|+++|++|+++|.+++++| +.+.+.
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLe--qf~~ph 43 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLE--QFPLPH 43 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEe--ccCCCc
Confidence 45799999999999999999999999999999 444333
No 250
>KOG0405|consensus
Probab=98.54 E-value=7.6e-08 Score=83.18 Aligned_cols=57 Identities=32% Similarity=0.585 Sum_probs=55.0
Q ss_pred CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l 58 (296)
.||+|....+.+++|+|++|+.+.|++|++++|++++.+|.++..++..|||.+|.+
T Consensus 412 ~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEEl 468 (478)
T KOG0405|consen 412 LMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEEL 468 (478)
T ss_pred EEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHHHh
Confidence 489999888999999999999999999999999999999999999999999999987
No 251
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.53 E-value=9.2e-07 Score=80.94 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+|+|||||++|+++|..|++.|++|+|+|+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 3899999999999999999999999999993
No 252
>PRK05868 hypothetical protein; Validated
Probab=98.52 E-value=3.5e-07 Score=82.91 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
||+|||||++|+++|..|++.|++|+|+|+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Confidence 899999999999999999999999999993
No 253
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.51 E-value=3.3e-06 Score=82.27 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+|||||.+|+++|++|+++|.+|+|+|+
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~ 291 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEA 291 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEec
Confidence 36999999999999999999999999999993
No 254
>KOG1336|consensus
Probab=98.51 E-value=2.7e-07 Score=83.08 Aligned_cols=110 Identities=21% Similarity=0.362 Sum_probs=71.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
..++|||+|++|..|+.++++.|. +.+++- +.. ..|
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~--~~~----------------~~p------------------------ 112 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVK--REY----------------LLP------------------------ 112 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEe--ccc----------------cCc------------------------
Confidence 479999999999999999999985 455554 111 011
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE-E--eCCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF-V--DKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIP 269 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~--~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~ 269 (296)
.+...+...+......+.....+.+++.+++++.+.... . ..+++.. +| +.++++++++|||+.|+.|++|
T Consensus 113 ---ydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~G--e~~kys~LilATGs~~~~l~~p 187 (478)
T KOG1336|consen 113 ---YDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNG--ETLKYSKLIIATGSSAKTLDIP 187 (478)
T ss_pred ---ccchhcccceeeccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCC--ceeecceEEEeecCccccCCCC
Confidence 011111111111112222223345677799987765432 2 3456666 67 7899999999999999999999
Q ss_pred CCc
Q psy7665 270 GAR 272 (296)
Q Consensus 270 G~~ 272 (296)
|.+
T Consensus 188 G~~ 190 (478)
T KOG1336|consen 188 GVE 190 (478)
T ss_pred Ccc
Confidence 987
No 255
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.50 E-value=2.1e-07 Score=86.15 Aligned_cols=31 Identities=32% Similarity=0.632 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHh----CCCcEEEEec
Q psy7665 116 YDLCVIGGGSGGISAAKEAAS----MNKKVALFDF 146 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~----~G~~V~iiE~ 146 (296)
|||+||||||+|+++|+.|++ .|.+|+|+|+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~ 35 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA 35 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence 699999999999999999998 8999999993
No 256
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.49 E-value=2.4e-06 Score=77.60 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+|||||.+|+++|++|+++|.+|+++|+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~ 35 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEA 35 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEec
Confidence 457999999999999999999999999999993
No 257
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.49 E-value=8.3e-07 Score=82.46 Aligned_cols=69 Identities=12% Similarity=0.015 Sum_probs=46.0
Q ss_pred ceeeeeeeccc--cCCccchhhhcc--Cccee-eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 77 TPYLVLAKARF--LLPTLECQEVYH--DGRFY-DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 77 ~p~~v~~~~~~--~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..|+||+++|+ .|..+..++... ...+. .....+....+.+|+|||+|.+|+..|..|++.+.+|+++.
T Consensus 161 ~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~ 234 (461)
T PLN02172 161 IFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIAS 234 (461)
T ss_pred EcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEE
Confidence 46999999994 333444443321 11010 11111112245689999999999999999999999999999
No 258
>KOG1800|consensus
Probab=98.47 E-value=5.2e-07 Score=78.97 Aligned_cols=33 Identities=24% Similarity=0.556 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCC
Q psy7665 116 YDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPS 150 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~ 150 (296)
..|+|||+||||+.+|..|.++ +.+|.|+| +.+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~E--k~P 55 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFE--KLP 55 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeee--cCC
Confidence 4899999999999999999985 68999999 555
No 259
>PRK06996 hypothetical protein; Provisional
Probab=98.47 E-value=5.6e-07 Score=82.31 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=30.3
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC----CcEEEEec
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMN----KKVALFDF 146 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G----~~V~iiE~ 146 (296)
...+||+||||||+|+++|..|++.| .+|+|+|+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~ 46 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDA 46 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecC
Confidence 35679999999999999999999987 47999993
No 260
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.47 E-value=7.2e-07 Score=82.49 Aligned_cols=27 Identities=44% Similarity=0.630 Sum_probs=26.0
Q ss_pred EECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 120 VIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 120 VIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
|||+|.+|+.||+++++.|.+|+|+||
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK 27 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEA 27 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeC
Confidence 799999999999999999999999994
No 261
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.46 E-value=7.4e-07 Score=80.48 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=80.7
Q ss_pred ccceeeeeeeccccCCccchhhhccC-cce------ee---ccccCC--CCccccEEEECCChHHHHHHHHHHh----CC
Q psy7665 75 LHTPYLVLAKARFLLPTLECQEVYHD-GRF------YD---YLDNNF--QTYDYDLCVIGGGSGGISAAKEAAS----MN 138 (296)
Q Consensus 75 ~~~p~~v~~~~~~~~~~~~~~~~~~~-~~~------~~---~~~~~~--~~~~~dVvVIGgG~aG~~aA~~l~~----~G 138 (296)
.+.+|.+|+|+|+.+..+..++.... ... .. .+.... .....+|+|||||++|+++|..|++ +|
T Consensus 93 ~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g 172 (364)
T TIGR03169 93 PLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRG 172 (364)
T ss_pred cccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 47799999999987765554432211 000 00 011100 0123489999999999999999975 34
Q ss_pred --CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHH
Q psy7665 139 --KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNN 216 (296)
Q Consensus 139 --~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (296)
.+|+|+. ... +.. . +. ..+...
T Consensus 173 ~~~~V~li~--~~~-------~l~-----------------------------------~-----~~-------~~~~~~ 196 (364)
T TIGR03169 173 LRGQVTLIA--GAS-------LLP-----------------------------------G-----FP-------AKVRRL 196 (364)
T ss_pred CCceEEEEe--CCc-------ccc-----------------------------------c-----CC-------HHHHHH
Confidence 4798886 221 000 0 00 111223
Q ss_pred HHHHHHHCCcEEEcceE-EEEeCCEEEE-cceeEEEEeCeEEEcCCCCCC
Q psy7665 217 YEKELEKNKIDYFNAKA-VFVDKHRVKF-AGEERTVSAQNFIIAVGGRPT 264 (296)
Q Consensus 217 ~~~~~~~~~v~~~~~~~-~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~ 264 (296)
+...+++.+|+++.+.. ...+...+.+ ++ .++.+|.||+|+|.+|.
T Consensus 197 ~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g--~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 197 VLRLLARRGIEVHEGAPVTRGPDGALILADG--RTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHHCCCEEEeCCeeEEEcCCeEEeCCC--CEEecCEEEEccCCChh
Confidence 44566778999987643 3344456666 55 57999999999998875
No 262
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.46 E-value=1.1e-05 Score=76.71 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=30.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..+||+|||||..|+.+|+.|+++|++|+|+|
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlE 36 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVE 36 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEE
Confidence 45899999999999999999999999999999
No 263
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.46 E-value=7.9e-07 Score=80.63 Aligned_cols=144 Identities=17% Similarity=0.269 Sum_probs=83.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccC--CCc-----------------hhHHHHhh
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG--CIP-----------------KKLFHRAS 177 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~--~~p-----------------~~~~~~~~ 177 (296)
||+|||+|.|||++|+.|.+. ++|+|+-|+......+-|.-||...... ..| ..+..-..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 9999999554444445566688653221 122 22222233
Q ss_pred hhHHHhhcccccCccccccCCH------------HHHHHHHHHHHHHHHHHHHHHHHH-CCcEEEcceE-E--EEeCC--
Q psy7665 178 LLNEEATTSDNFGFHMKKSFTW------------KTLVDNVQKYIRNLNNNYEKELEK-NKIDYFNAKA-V--FVDKH-- 239 (296)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~--~~~~~-- 239 (296)
+-...+.++..+|++|+...+. .....--...-..+...+.....+ .+|+++.+.. . ..+++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 3445667777788887652211 000000001112222333444443 4888887632 1 12333
Q ss_pred --EEEE--cc-eeEEEEeCeEEEcCCC
Q psy7665 240 --RVKF--AG-EERTVSAQNFIIAVGG 261 (296)
Q Consensus 240 --~v~v--~g-~~~~~~a~~vV~AtG~ 261 (296)
.+.+ .+ +...+.++.||+|||.
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCC
Confidence 2333 22 3467899999999994
No 264
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.45 E-value=1.1e-06 Score=73.72 Aligned_cols=40 Identities=25% Similarity=0.600 Sum_probs=35.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVN 164 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~ 164 (296)
+|+|||+|++|++||+.|++.|.+|+||| +.. .+||+...
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~e--Kg~------GvGGRlAt 42 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFE--KGR------GVGGRLAT 42 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEE--cCC------Ccccchhe
Confidence 69999999999999999999999999999 444 77886543
No 265
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.45 E-value=1.7e-06 Score=79.09 Aligned_cols=133 Identities=25% Similarity=0.270 Sum_probs=81.6
Q ss_pred ccceeeeeeeccccCCccchhhhccCcce---eec--cccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCC
Q psy7665 75 LHTPYLVLAKARFLLPTLECQEVYHDGRF---YDY--LDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTP 149 (296)
Q Consensus 75 ~~~p~~v~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~ 149 (296)
...+|..++++|..+...+.......... .+. ...... ...+++|||+|+.|+++|..++++|++|+++| ..
T Consensus 92 ~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e--~~ 168 (415)
T COG0446 92 EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAE-PPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIE--AA 168 (415)
T ss_pred cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHh-ccCeEEEECCcHHHHHHHHHHHHcCCeEEEEE--cc
Confidence 34488889998887766551111101111 011 011000 13599999999999999999999999999999 55
Q ss_pred CCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEE
Q psy7665 150 SQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229 (296)
Q Consensus 150 ~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 229 (296)
+ .+++. +.. ..+...+...+++.+++++
T Consensus 169 ~------~~~~~----------------------------------------~~~------~~~~~~~~~~l~~~gi~~~ 196 (415)
T COG0446 169 D------RLGGQ----------------------------------------LLD------PEVAEELAELLEKYGVELL 196 (415)
T ss_pred c------ccchh----------------------------------------hhh------HHHHHHHHHHHHHCCcEEE
Confidence 5 33331 000 2233345566778888886
Q ss_pred cceE-EEEeC--C--E---EEE-cceeEEEEeCeEEEcCCCCCC
Q psy7665 230 NAKA-VFVDK--H--R---VKF-AGEERTVSAQNFIIAVGGRPT 264 (296)
Q Consensus 230 ~~~~-~~~~~--~--~---v~v-~g~~~~~~a~~vV~AtG~~p~ 264 (296)
.+.. ..+.. . . +.. ++ ..+++|.+++++|.+|+
T Consensus 197 ~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 197 LGTKVVGVEGKGNTLVVERVVGIDG--EEIKADLVIIGPGERPN 238 (415)
T ss_pred eCCceEEEEcccCcceeeEEEEeCC--cEEEeeEEEEeeccccc
Confidence 6543 22221 1 1 122 44 67999999999999884
No 266
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.44 E-value=3.7e-06 Score=79.49 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=46.7
Q ss_pred ccceeeeeeeccccCCccchhhhcc--Ccceee--ccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 75 LHTPYLVLAKARFLLPTLECQEVYH--DGRFYD--YLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+.++.+++++|+.+..++.++... ...... ..... .....+|+|||||+.|+++|..|++.|.+|++++
T Consensus 309 ~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~-~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~ 382 (515)
T TIGR03140 309 VLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGP-FFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLE 382 (515)
T ss_pred EEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChh-hcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEE
Confidence 3668899999997654443333211 011110 01111 1134589999999999999999999999999999
No 267
>PRK07538 hypothetical protein; Provisional
Probab=98.44 E-value=5.6e-07 Score=82.75 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
||+|||||++|+++|..|+++|++|+|+|+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 31 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEA 31 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 899999999999999999999999999993
No 268
>KOG0029|consensus
Probab=98.43 E-value=3.2e-07 Score=85.56 Aligned_cols=41 Identities=27% Similarity=0.470 Sum_probs=36.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
..++|+|||||+||++||.+|.+.|++|+|+| .++ .+||+.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLE--ARd------RvGGRI 54 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLE--ARD------RVGGRI 54 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEe--ccC------CcCcee
Confidence 45699999999999999999999999999999 777 666654
No 269
>PTZ00367 squalene epoxidase; Provisional
Probab=98.40 E-value=3.9e-07 Score=86.48 Aligned_cols=33 Identities=33% Similarity=0.641 Sum_probs=31.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
..+||+|||||++|+++|..|++.|++|+|+|+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr 64 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcc
Confidence 468999999999999999999999999999994
No 270
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.40 E-value=1.1e-05 Score=73.51 Aligned_cols=35 Identities=37% Similarity=0.621 Sum_probs=32.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~ 150 (296)
..+||+|||||..|+++|++|++.+ .+|+|+| +.+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llE--k~~ 38 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLE--KED 38 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEE--ccC
Confidence 4679999999999999999999998 9999999 555
No 271
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.39 E-value=3.7e-06 Score=78.07 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHCCcEEEcceEEE---EeCCE---EEE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665 211 RNLNNNYEKELEKNKIDYFNAKAVF---VDKHR---VKF-AGEERTVSAQNFIIAVGGRPTYP 266 (296)
Q Consensus 211 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~---v~v-~g~~~~~~a~~vV~AtG~~p~~p 266 (296)
..+...|.+...+.||+++.++... ..... |+. +| .++.||.+|-|||.+..+.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g--~~i~ad~~IDASG~~s~L~ 214 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDG--RTIEADFFIDASGRRSLLA 214 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTS--EEEEESEEEE-SGGG-CCC
T ss_pred HHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCC--CEEEEeEEEECCCccchhh
Confidence 4566667788888899999886532 22333 333 45 7899999999999765554
No 272
>PRK12831 putative oxidoreductase; Provisional
Probab=98.39 E-value=1.1e-06 Score=81.85 Aligned_cols=90 Identities=12% Similarity=0.110 Sum_probs=55.1
Q ss_pred HHHHHHHHhhcCCC----Ccee-eccceeeeeeeccc-cCCccchhhhccC--cceeecccc------------CCCCcc
Q psy7665 56 EAISLSWIKGYNIE----PEVI-KLHTPYLVLAKARF-LLPTLECQEVYHD--GRFYDYLDN------------NFQTYD 115 (296)
Q Consensus 56 e~l~v~~~~~~~~~----~~~~-~~~~p~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~ 115 (296)
+.+++.+++++.+. .+.+ ....+|+|++|+|+ .+..++.++.+.. ....+.+.. .....+
T Consensus 202 ~~~gv~i~~~~~v~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~g 281 (464)
T PRK12831 202 KKLGVKIETNVVVGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVG 281 (464)
T ss_pred HHcCCEEEcCCEECCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCC
Confidence 33445555555332 2222 23458999999997 4544444433211 111111110 001234
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+|+|||||..|+.+|..|.+.|.+|++++
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~ 311 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVY 311 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEe
Confidence 689999999999999999999999999999
No 273
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.38 E-value=1.7e-05 Score=72.67 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=30.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhC-CC-cEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM-NK-KVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~-G~-~V~iiE~ 146 (296)
..+||+|||||.+|+++|++|+++ |. +|+|+|+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~ 63 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEK 63 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 568999999999999999999995 85 9999994
No 274
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.37 E-value=3.3e-06 Score=81.61 Aligned_cols=33 Identities=15% Similarity=0.406 Sum_probs=30.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhC-CCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM-NKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE~ 146 (296)
..+||+||||||+|+++|..|++. |.+|+|||+
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~ 64 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVER 64 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEc
Confidence 357999999999999999999995 999999993
No 275
>KOG2614|consensus
Probab=98.35 E-value=1.1e-05 Score=71.88 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+|+|||||.+|+.+|..|.++|.+|+|+|+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~ 33 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLES 33 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEee
Confidence 3899999999999999999999999999995
No 276
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.34 E-value=6.4e-07 Score=80.73 Aligned_cols=41 Identities=32% Similarity=0.686 Sum_probs=36.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeec
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVN 164 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~ 164 (296)
+||+|||||++|+++|.+|++.|.+|+|+| +.+ .+||.|.+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viE--k~~------~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVE--KRN------HIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEe--cCC------CCCCceee
Confidence 599999999999999999999999999999 656 67887643
No 277
>PRK07208 hypothetical protein; Provisional
Probab=98.33 E-value=7.5e-07 Score=83.47 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=35.5
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
..||+|||||++||+||++|+++|++|+|+| +.+ .+||.+
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E--~~~------~~GG~~ 43 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLE--ADP------VVGGIS 43 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCC------CCCcee
Confidence 4589999999999999999999999999999 677 666654
No 278
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.32 E-value=1.9e-05 Score=71.04 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=28.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCc-EEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKK-VALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE 145 (296)
+..|+|||+|+.|+++|..|.+.|.+ |+|++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~ 203 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAY 203 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 45899999999999999999999987 99999
No 279
>KOG1336|consensus
Probab=98.32 E-value=8.1e-06 Score=73.77 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=102.3
Q ss_pred HHHHHHHHHhhcCCCCceee----------ccceeeeeeeccccCCccchhhhc--cCcceeeccc-----cCCCCcccc
Q psy7665 55 AEAISLSWIKGYNIEPEVIK----------LHTPYLVLAKARFLLPTLECQEVY--HDGRFYDYLD-----NNFQTYDYD 117 (296)
Q Consensus 55 ~e~l~v~~~~~~~~~~~~~~----------~~~p~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~d 117 (296)
-+..+++.++++.++.-++. ....+..|+|+|..+..+++++.+ ...++.+.-+ .. ....-.
T Consensus 137 Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~-~~~~~~ 215 (478)
T KOG1336|consen 137 YKEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAA-IQLGGK 215 (478)
T ss_pred HhhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHH-hccCce
Confidence 34566777777666544442 345678899999855555555544 2222222111 00 012447
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccC
Q psy7665 118 LCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSF 197 (296)
Q Consensus 118 VvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (296)
|+++|+|..|+++|..|...+++|++++ +.+ .++|.
T Consensus 216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~--~e~---------------~~~~~--------------------------- 251 (478)
T KOG1336|consen 216 VVCVGGGFIGMEVAAALVSKAKSVTVVF--PEP---------------WLLPR--------------------------- 251 (478)
T ss_pred EEEECchHHHHHHHHHHHhcCceEEEEc--cCc---------------cchhh---------------------------
Confidence 9999999999999999999999999999 332 11110
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE--E--e-CCEEEE---cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665 198 TWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF--V--D-KHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP 269 (296)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~--~-~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i~ 269 (296)
.....+...+.+.+++++|+++.++... . . .....+ ++ .++.||.||+.+|.+|..+.+.
T Consensus 252 ----------lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg--~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 252 ----------LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG--KTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred ----------hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC--CEeccCeEEEeecccccccccc
Confidence 2223445566777889999998775422 1 1 122223 66 7899999999999999887655
No 280
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.31 E-value=1.9e-06 Score=80.29 Aligned_cols=70 Identities=19% Similarity=0.108 Sum_probs=45.7
Q ss_pred cceeeeeeecccc-CCccchhhhccC--cceeecccc-------CCCCccccEEEECCChHHHHHHHHHHhCCC-cEEEE
Q psy7665 76 HTPYLVLAKARFL-LPTLECQEVYHD--GRFYDYLDN-------NFQTYDYDLCVIGGGSGGISAAKEAASMNK-KVALF 144 (296)
Q Consensus 76 ~~p~~v~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~ii 144 (296)
..+|.+++++|+. +...+.++.... ....+.+.. .......+|+|||||..|+.+|..|.+.|. +|+++
T Consensus 224 ~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv 303 (457)
T PRK11749 224 AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIV 303 (457)
T ss_pred hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEe
Confidence 5689999999975 332333322211 111111111 001134589999999999999999999997 89999
Q ss_pred e
Q psy7665 145 D 145 (296)
Q Consensus 145 E 145 (296)
+
T Consensus 304 ~ 304 (457)
T PRK11749 304 Y 304 (457)
T ss_pred e
Confidence 9
No 281
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.30 E-value=2.3e-05 Score=74.17 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=46.1
Q ss_pred ccceeeeeeeccccCCccchhhhcc--Cccee--eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 75 LHTPYLVLAKARFLLPTLECQEVYH--DGRFY--DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+.++.+++|+|..+..+..++... ..... ...... ...+.+|+|||||..|+++|..|+..+.+|++++
T Consensus 308 ~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~-~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~ 381 (517)
T PRK15317 308 VLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP-LFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLE 381 (517)
T ss_pred EEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCch-hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEE
Confidence 3567889999997554333332211 11110 011111 1134589999999999999999999999999999
No 282
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.30 E-value=8.3e-07 Score=83.49 Aligned_cols=39 Identities=36% Similarity=0.538 Sum_probs=34.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
+||+|||||++|+++|.+|+++|++|+|+| +.+ .+||.+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE--~~~------~~GG~~ 39 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLE--RYL------IPGGSA 39 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEE--CCC------CCCCce
Confidence 589999999999999999999999999999 666 556654
No 283
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.30 E-value=2.2e-06 Score=78.79 Aligned_cols=30 Identities=30% Similarity=0.564 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMN-KKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~ 146 (296)
+|+|||||++||++|..|+++| .+|+|+|+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er 32 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEA 32 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEec
Confidence 6999999999999999999998 59999993
No 284
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.29 E-value=5.9e-07 Score=88.64 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASM--NKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE 145 (296)
+|+||||||+|+++|..|++. |++|+|+|
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlE 32 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVE 32 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 799999999999999999998 89999999
No 285
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.29 E-value=1e-06 Score=81.73 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=53.8
Q ss_pred cceeecCCCCeEEEEEEEcCC-hhHHHHHHHHHHHcCCCHHHHccCcCCC-CChHHHHHH
Q psy7665 3 LPKLGGSEVSTFITAEISSNN-AGEITQGYALGVMLGAYKQDFDALIGIH-PTCAEAISL 60 (296)
Q Consensus 3 ~~~~~~~~~~~ilG~~~~g~~-a~e~i~~~~~~~~~~~~k~~l~~~i~~~-pt~~e~l~v 60 (296)
+|+++|++|++|||+|++|++ ++|+|+.++++|+++.+.++|.+..+.| |+++|....
T Consensus 376 ~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~ 435 (444)
T PRK09564 376 VKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTWDA 435 (444)
T ss_pred EEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCcCH
Confidence 689999999999999999996 8999999999999999999999999888 999987644
No 286
>KOG4716|consensus
Probab=98.29 E-value=1.2e-06 Score=75.72 Aligned_cols=56 Identities=39% Similarity=0.562 Sum_probs=50.6
Q ss_pred cceeecC-CCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHH
Q psy7665 3 LPKLGGS-EVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58 (296)
Q Consensus 3 ~~~~~~~-~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l 58 (296)
+|+|.++ ++.+|+|.|++||+|+|+||+++.|++.++++.+|.++|-.||+.+|..
T Consensus 428 ~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~F 484 (503)
T KOG4716|consen 428 LKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEF 484 (503)
T ss_pred EEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccchhhe
Confidence 4667654 4578999999999999999999999999999999999999999999865
No 287
>KOG2415|consensus
Probab=98.28 E-value=2.3e-06 Score=75.91 Aligned_cols=42 Identities=24% Similarity=0.559 Sum_probs=34.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhC------CCcEEEEeccCCCCCCcccccCCeee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM------NKKVALFDFVTPSQHGTVWGLGGTCV 163 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~------G~~V~iiE~~~~~~~g~~~~~GG~~~ 163 (296)
..+||+||||||||++||.+|.+. ..+|+|+| +.. .+||...
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvE--Kaa------~~Gghtl 122 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVE--KAA------EVGGHTL 122 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEe--ecc------ccCCcee
Confidence 678999999999999999999875 35799999 666 5566443
No 288
>PRK07233 hypothetical protein; Provisional
Probab=98.28 E-value=9.7e-07 Score=81.43 Aligned_cols=38 Identities=32% Similarity=0.660 Sum_probs=33.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
+|+|||||++||+||++|+++|++|+|+| +.+ .+||.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE--~~~------~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFE--ADD------QLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEE--eCC------CCCCce
Confidence 58999999999999999999999999999 777 566644
No 289
>PLN02576 protoporphyrinogen oxidase
Probab=98.28 E-value=1e-06 Score=82.96 Aligned_cols=41 Identities=29% Similarity=0.456 Sum_probs=36.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhC-CCcEEEEeccCCCCCCcccccCCee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM-NKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
..+||+|||||++||+||++|.++ |++|+|+| +.+ .+||.+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlE--a~~------rvGGr~ 52 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTE--ARD------RVGGNI 52 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEe--cCC------CCCCce
Confidence 456999999999999999999999 99999999 677 677754
No 290
>KOG2495|consensus
Probab=98.28 E-value=1.3e-05 Score=71.53 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=101.5
Q ss_pred eccceeeeeeeccccCCccchhhhccCccee-------ec---------------cccCCCCccccEEEECCChHHHHHH
Q psy7665 74 KLHTPYLVLAKARFLLPTLECQEVYHDGRFY-------DY---------------LDNNFQTYDYDLCVIGGGSGGISAA 131 (296)
Q Consensus 74 ~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~---------------~~~~~~~~~~dVvVIGgG~aG~~aA 131 (296)
-.+.+|-.++|+|+.+....+++......+. +. +..++...-..++||||||.|.+.|
T Consensus 155 ~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFA 234 (491)
T KOG2495|consen 155 FVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFA 234 (491)
T ss_pred eeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeeh
Confidence 4567899999999877776666433322110 00 1111122346799999999999999
Q ss_pred HHHHh--------------CCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccC
Q psy7665 132 KEAAS--------------MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSF 197 (296)
Q Consensus 132 ~~l~~--------------~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (296)
.+|+. .-.+|+++| ..+
T Consensus 235 aEL~Dfi~~Dl~k~yp~l~~~i~vtLiE--A~d----------------------------------------------- 265 (491)
T KOG2495|consen 235 AELADFIPEDLRKIYPELKKDIKVTLIE--AAD----------------------------------------------- 265 (491)
T ss_pred HHHHHHHHHHHHHhhhcchhheEEEeec--cch-----------------------------------------------
Confidence 99874 134689998 222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCC------CC
Q psy7665 198 TWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTY------PD 267 (296)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~------p~ 267 (296)
.....++... .....+.+.+.++++..++. ...+...+++ +|+..++.+--+|-|||..|+. -.
T Consensus 266 ---~iL~mFdkrl---~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~ 339 (491)
T KOG2495|consen 266 ---HILNMFDKRL---VEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQ 339 (491)
T ss_pred ---hHHHHHHHHH---HHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhc
Confidence 1222222222 22234556777999988755 3356666766 5666789999999999964432 23
Q ss_pred CCCCc-cceee-cccCCCCCCcEEEeeccC
Q psy7665 268 IPGAR-LLRTL-SLLSGVDPPTLIFLEHIS 295 (296)
Q Consensus 268 i~G~~-~~~~~-s~~~~~~~~~~~~~~~~~ 295 (296)
+++.. ..+.. -.+..+-.+....|++.+
T Consensus 340 i~e~~rr~L~vDE~LrV~G~~nvfAiGDca 369 (491)
T KOG2495|consen 340 IDEQGRRGLAVDEWLRVKGVKNVFAIGDCA 369 (491)
T ss_pred CCccCceeeeeeceeeccCcCceEEecccc
Confidence 44333 23333 355566666666666543
No 291
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.27 E-value=1.1e-06 Score=81.70 Aligned_cols=38 Identities=32% Similarity=0.595 Sum_probs=34.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCee
Q psy7665 117 DLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
+|+|||||++||+||+.|++.| ++|+|+| +.+ .+||.+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlE--a~~------~~GGr~ 41 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLE--ASD------RLGGKI 41 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEE--cCC------CCcceE
Confidence 6999999999999999999988 8999999 777 667754
No 292
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.26 E-value=1e-06 Score=82.80 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=32.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCC
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQH 152 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~ 152 (296)
.||+|||||++|++||..|+++|++|+|+| +.+.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE--~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLE--QHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEe--cCCCC
Confidence 489999999999999999999999999999 77733
No 293
>PLN02268 probable polyamine oxidase
Probab=98.26 E-value=1.2e-06 Score=81.02 Aligned_cols=32 Identities=38% Similarity=0.612 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
+|+|||||.+|++||+.|.+.|++|+|+| ..+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlE--a~~ 33 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLE--SRD 33 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEe--CCC
Confidence 79999999999999999999999999999 777
No 294
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.25 E-value=1.3e-06 Score=81.50 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=34.9
Q ss_pred ccEEEECCChHHHHHHHHHHhC----CCcEEEEeccCCCCCCcccccCCee
Q psy7665 116 YDLCVIGGGSGGISAAKEAASM----NKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~----G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
.||+|||||++||+||++|+++ |++|+|+| +.+ .+||.+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE--~~~------r~GG~~ 45 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVE--ASD------RVGGKI 45 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEE--cCC------cCcceE
Confidence 4899999999999999999999 99999999 677 667655
No 295
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.25 E-value=3.4e-06 Score=79.83 Aligned_cols=114 Identities=25% Similarity=0.349 Sum_probs=72.0
Q ss_pred ccEEEECCChHHHHHHHHHHhC---CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASM---NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH 192 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~---G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 192 (296)
.+++|||-|++|..+..++.+. -++++++- ..+ .+.- ..+.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg--~Ep------~~nY----------------------------~Ri~ 47 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFG--EEP------RPNY----------------------------NRIL 47 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEec--cCC------Cccc----------------------------ccee
Confidence 4799999999999999999984 36788886 222 1000 0000
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeC--CEEEE-cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665 193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDI 268 (296)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~--~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i 268 (296)
....+..+ ...+++...-.+++++++++++.++. ..++. ..|+. .| .++.+|.+|+|||+.|++|++
T Consensus 48 Ls~vl~~~-------~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g--~~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 48 LSSVLAGE-------KTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAG--RTVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred eccccCCC-------ccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCC--cEeecceeEEecCccccccCC
Confidence 00000000 01112222234566788999988765 33433 34444 55 789999999999999999999
Q ss_pred CCCccc
Q psy7665 269 PGARLL 274 (296)
Q Consensus 269 ~G~~~~ 274 (296)
||.+.+
T Consensus 119 PG~~~~ 124 (793)
T COG1251 119 PGSDLP 124 (793)
T ss_pred CCCCCC
Confidence 998743
No 296
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.25 E-value=2.9e-06 Score=84.52 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=55.3
Q ss_pred HHHHHHHHhhcCC--CCceeeccceeeeeeeccccCCcc-chhhhcc-Ccceeecccc-----CCCCccccEEEECCChH
Q psy7665 56 EAISLSWIKGYNI--EPEVIKLHTPYLVLAKARFLLPTL-ECQEVYH-DGRFYDYLDN-----NFQTYDYDLCVIGGGSG 126 (296)
Q Consensus 56 e~l~v~~~~~~~~--~~~~~~~~~p~~v~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~-----~~~~~~~dVvVIGgG~a 126 (296)
+.+++++++++.+ +.+.+....+|+|++|+|+..+.. +..+... .....+.+.. .....+.+|+|||||.+
T Consensus 600 ~~~GVe~~~gt~Vdi~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnV 679 (1019)
T PRK09853 600 KAHGVKFEFGCSPDLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNT 679 (1019)
T ss_pred HHcCCEEEeCceeEEEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChH
Confidence 3345566666644 444555667899999999864432 2222211 1111111110 00123568999999999
Q ss_pred HHHHHHHHHhC-C-CcEEEEe
Q psy7665 127 GISAAKEAASM-N-KKVALFD 145 (296)
Q Consensus 127 G~~aA~~l~~~-G-~~V~iiE 145 (296)
|+.+|..+.+. | .+|+++.
T Consensus 680 AmD~Ar~a~RlgGakeVTLVy 700 (1019)
T PRK09853 680 AMDAARAALRVPGVEKVTVVY 700 (1019)
T ss_pred HHHHHHHHHhcCCCceEEEEE
Confidence 99999998887 4 4899999
No 297
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.21 E-value=3.3e-05 Score=71.86 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=45.9
Q ss_pred ceeeeeeeccc-cCCccchhhhccC--cceeecccc-------------CCCCccccEEEECCChHHHHHHHHHHhCCCc
Q psy7665 77 TPYLVLAKARF-LLPTLECQEVYHD--GRFYDYLDN-------------NFQTYDYDLCVIGGGSGGISAAKEAASMNKK 140 (296)
Q Consensus 77 ~p~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~-------------~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~ 140 (296)
.+|++++++|+ .+..++.++.+.. ....+.+.. .....+.+|+|||||..|+.+|..+.+.|.+
T Consensus 218 ~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~ 297 (449)
T TIGR01316 218 QYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAE 297 (449)
T ss_pred hCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCE
Confidence 57999999997 4444433332211 111111100 0011345899999999999999999999999
Q ss_pred EEEEe
Q psy7665 141 VALFD 145 (296)
Q Consensus 141 V~iiE 145 (296)
|++++
T Consensus 298 Vtlv~ 302 (449)
T TIGR01316 298 VHCLY 302 (449)
T ss_pred EEEEe
Confidence 99999
No 298
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.21 E-value=1.8e-06 Score=74.20 Aligned_cols=40 Identities=28% Similarity=0.573 Sum_probs=37.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeee
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV 163 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~ 163 (296)
+|.+|||+|.+|+..|..|+++|++|+|+| +++ .+||.|-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIve--kR~------HIGGNaY 41 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVE--KRN------HIGGNAY 41 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEe--ccc------cCCCccc
Confidence 699999999999999999999999999999 677 9999983
No 299
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.21 E-value=1.5e-06 Score=81.98 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=29.7
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 118 LCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 118 VvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
|||||||++||+||.+|++.|++|+|+| +.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE--~~~ 31 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVE--QRD 31 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEE--CCC
Confidence 6899999999999999999999999999 777
No 300
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.20 E-value=1.8e-05 Score=80.32 Aligned_cols=132 Identities=15% Similarity=0.117 Sum_probs=83.2
Q ss_pred ceeeccceeeeeeeccccCCccchhhhccCc--ce---eeccccCCCCccccEEEECCChHHHHHHHHHHhCCC-cEEEE
Q psy7665 71 EVIKLHTPYLVLAKARFLLPTLECQEVYHDG--RF---YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNK-KVALF 144 (296)
Q Consensus 71 ~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~ii 144 (296)
+.+..+.++.+|+|+|+.+..++.++..... .. ...+.......+.+|+|||+|+.|+++|..|++.|. .|+|+
T Consensus 268 ~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv 347 (985)
T TIGR01372 268 ERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAII 347 (985)
T ss_pred cceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEE
Confidence 3344678999999999876555443322211 11 122221111134589999999999999999999995 58899
Q ss_pred eccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy7665 145 DFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKN 224 (296)
Q Consensus 145 E~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (296)
| ..+ . . ...+...+++.
T Consensus 348 ~--~~~---------------------------------------------~-----~-----------~~~l~~~L~~~ 364 (985)
T TIGR01372 348 D--ARA---------------------------------------------D-----V-----------SPEARAEAREL 364 (985)
T ss_pred c--cCc---------------------------------------------c-----h-----------hHHHHHHHHHc
Confidence 8 322 0 0 01123456777
Q ss_pred CcEEEcceEE-EE-eCC---EEEE---cceeEEEEeCeEEEcCCCCCCC
Q psy7665 225 KIDYFNAKAV-FV-DKH---RVKF---AGEERTVSAQNFIIAVGGRPTY 265 (296)
Q Consensus 225 ~v~~~~~~~~-~~-~~~---~v~v---~g~~~~~~a~~vV~AtG~~p~~ 265 (296)
||+++.+... .+ ... .|++ ++...++.||.|+++.|..|+.
T Consensus 365 GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt 413 (985)
T TIGR01372 365 GIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVV 413 (985)
T ss_pred CCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchh
Confidence 9999877542 22 222 2343 2344679999999999998865
No 301
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=2e-06 Score=78.66 Aligned_cols=38 Identities=32% Similarity=0.573 Sum_probs=34.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
.|+|+|||.||++||++|+++|++|+|+| ..+ .+||-|
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~e--a~~------~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYE--ARD------RLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEe--ccC------ccCcee
Confidence 69999999999999999999999999999 777 666654
No 302
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.18 E-value=4.6e-06 Score=83.43 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=53.3
Q ss_pred HHHHHHHhhcC--CCCceeeccceeeeeeeccccCCcc-chhhhcc-Ccceeeccc----c-CCCCccccEEEECCChHH
Q psy7665 57 AISLSWIKGYN--IEPEVIKLHTPYLVLAKARFLLPTL-ECQEVYH-DGRFYDYLD----N-NFQTYDYDLCVIGGGSGG 127 (296)
Q Consensus 57 ~l~v~~~~~~~--~~~~~~~~~~p~~v~~~~~~~~~~~-~~~~~~~-~~~~~~~~~----~-~~~~~~~dVvVIGgG~aG 127 (296)
.+++++++++. ++.+.+....+|+|++|+|+..+.. ...+... .....+.+. . .....+.+|+|||||..|
T Consensus 599 ~~GVe~~~g~~~d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvA 678 (1012)
T TIGR03315 599 FHGVEFKYGCSPDLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTA 678 (1012)
T ss_pred hcCcEEEEecccceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHH
Confidence 34555555532 2334455667999999999764432 2222111 111111111 0 111245689999999999
Q ss_pred HHHHHHHHhC-CC-cEEEEe
Q psy7665 128 ISAAKEAASM-NK-KVALFD 145 (296)
Q Consensus 128 ~~aA~~l~~~-G~-~V~iiE 145 (296)
+.+|..+.+. |. +|++++
T Consensus 679 mD~Ar~a~Rl~Ga~kVtLVy 698 (1012)
T TIGR03315 679 MDAARAALRVPGVEKVTVVY 698 (1012)
T ss_pred HHHHHHHHHhCCCceEEEEE
Confidence 9999999886 75 799999
No 303
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.18 E-value=7.4e-06 Score=80.94 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=49.9
Q ss_pred CCceeeccceeeeeeeccc-cCCccchhhhcc--Ccceeecccc------------CCCCccccEEEECCChHHHHHHHH
Q psy7665 69 EPEVIKLHTPYLVLAKARF-LLPTLECQEVYH--DGRFYDYLDN------------NFQTYDYDLCVIGGGSGGISAAKE 133 (296)
Q Consensus 69 ~~~~~~~~~p~~v~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~------------~~~~~~~dVvVIGgG~aG~~aA~~ 133 (296)
+.+.+....+|+|++++|+ .+..+++++.+. .....+.+.. .....+.+|+|||||..|+.+|..
T Consensus 509 ~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~ 588 (752)
T PRK12778 509 TIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSART 588 (752)
T ss_pred CHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHH
Confidence 3334445668999999997 444444433221 1111111110 001134689999999999999999
Q ss_pred HHhCCCc-EEEEe
Q psy7665 134 AASMNKK-VALFD 145 (296)
Q Consensus 134 l~~~G~~-V~iiE 145 (296)
+.+.|.+ |++++
T Consensus 589 ~~r~Ga~~Vtlv~ 601 (752)
T PRK12778 589 AKRLGAERVTIVY 601 (752)
T ss_pred HHHcCCCeEEEee
Confidence 9999987 99999
No 304
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.17 E-value=4.2e-06 Score=83.98 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHhhcCC----CCceeeccceeeeeeecccc-CCccchhhhcc--Ccceeecccc-------------C-C
Q psy7665 53 TCAEAISLSWIKGYNI----EPEVIKLHTPYLVLAKARFL-LPTLECQEVYH--DGRFYDYLDN-------------N-F 111 (296)
Q Consensus 53 t~~e~l~v~~~~~~~~----~~~~~~~~~p~~v~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~-------------~-~ 111 (296)
...+.+++.+++|+.+ +.+.+....+|+|++++|+. +...++++.+. .....+.+.. + .
T Consensus 364 ~~l~~~Gv~f~~n~~vG~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~ 443 (944)
T PRK12779 364 EKIKLLGGRFVKNFVVGKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLP 443 (944)
T ss_pred HHHHhhcCeEEEeEEeccEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhcccccccccccc
Confidence 3455667776666554 44445556799999999984 43334333221 1111222210 0 0
Q ss_pred CCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
...+.+|+|||||..|+.+|..+.+.|.+|+++.
T Consensus 444 ~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~ 477 (944)
T PRK12779 444 EVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVY 477 (944)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence 1134689999999999999999999999999998
No 305
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.12 E-value=3.6e-06 Score=75.82 Aligned_cols=41 Identities=27% Similarity=0.486 Sum_probs=36.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
...||+|||+|.+||.+|+.|.+.|++|+|+| .++ .+||+|
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilE--ar~------r~GGR~ 46 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILE--ARD------RVGGRS 46 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEe--ccC------CcCcee
Confidence 45699999999999999999999999999999 566 777765
No 306
>KOG1298|consensus
Probab=98.12 E-value=3.8e-05 Score=67.74 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=32.2
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV 147 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~ 147 (296)
+..+||+|||||.+|++.|+.|++.|.+|.|+|++
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 45679999999999999999999999999999943
No 307
>KOG2404|consensus
Probab=98.12 E-value=3.6e-05 Score=66.34 Aligned_cols=38 Identities=32% Similarity=0.610 Sum_probs=33.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
.|||||+|.||++|+..+...|-.|+++| +.. .+||..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~lle--k~~------s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLE--KAG------SIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEe--ccC------CcCCcc
Confidence 59999999999999999999999999999 666 677754
No 308
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.10 E-value=1.2e-05 Score=76.21 Aligned_cols=136 Identities=19% Similarity=0.222 Sum_probs=89.2
Q ss_pred eccceeeeeeeccccCCccchhhhccC--ccee---ecccc-CCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665 74 KLHTPYLVLAKARFLLPTLECQEVYHD--GRFY---DYLDN-NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV 147 (296)
Q Consensus 74 ~~~~p~~v~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~-~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~ 147 (296)
....+|..|+|+|+.|-.++.++.... ...+ +.... ........-+|||||.=|+++|..|...|.+|.+++
T Consensus 98 ~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh-- 175 (793)
T COG1251 98 RTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVH-- 175 (793)
T ss_pred cEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEe--
Confidence 345678999999998888887765532 2222 11110 001122357999999999999999999999999999
Q ss_pred CCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcE
Q psy7665 148 TPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID 227 (296)
Q Consensus 148 ~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (296)
..+ .-+..+++.....+ +...+++.|++
T Consensus 176 ~~~-------------------------------------------------~lMerQLD~~ag~l---L~~~le~~Gi~ 203 (793)
T COG1251 176 IAP-------------------------------------------------TLMERQLDRTAGRL---LRRKLEDLGIK 203 (793)
T ss_pred ecc-------------------------------------------------hHHHHhhhhHHHHH---HHHHHHhhcce
Confidence 332 01333344433333 45667888999
Q ss_pred EEcceEE--EEeC---CEEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665 228 YFNAKAV--FVDK---HRVKF-AGEERTVSAQNFIIAVGGRPTY 265 (296)
Q Consensus 228 ~~~~~~~--~~~~---~~v~v-~g~~~~~~a~~vV~AtG~~p~~ 265 (296)
++++... .... ..+.. +| ..+.||.||.|+|.+|+.
T Consensus 204 ~~l~~~t~ei~g~~~~~~vr~~DG--~~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 204 VLLEKNTEEIVGEDKVEGVRFADG--TEIPADLVVMAVGIRPND 245 (793)
T ss_pred eecccchhhhhcCcceeeEeecCC--CcccceeEEEeccccccc
Confidence 8875431 1222 23333 56 678999999999998875
No 309
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.10 E-value=3.8e-06 Score=78.18 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCC
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQ 151 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~ 151 (296)
+|+|||||++|++||++|.++|++|+|+| +.++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE--~~~~ 33 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLE--ARDV 33 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEe--cCCC
Confidence 58999999999999999999999999999 6663
No 310
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.08 E-value=3.6e-06 Score=77.64 Aligned_cols=42 Identities=26% Similarity=0.261 Sum_probs=38.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV 163 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~ 163 (296)
..|||+|||+|.+||.+|..|++.|++|+++| +++ ..||.+.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD--~n~------~yGG~~a 44 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMD--RNP------YYGGESA 44 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEec--CCC------CcCcccc
Confidence 46899999999999999999999999999999 777 7788664
No 311
>KOG3851|consensus
Probab=98.08 E-value=3.4e-06 Score=72.36 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=28.7
Q ss_pred CccccEEEECCChHHHHHHHHHHhC-C-CcEEEEe
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASM-N-KKVALFD 145 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~-G-~~V~iiE 145 (296)
...++|+|||||.+||.+|..+.++ | -+|.|+|
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIve 71 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVE 71 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEec
Confidence 4678999999999999999988765 5 4799999
No 312
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.06 E-value=5.3e-06 Score=78.24 Aligned_cols=32 Identities=44% Similarity=0.639 Sum_probs=30.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..+||+|||||.+|+.+|+.|+++|++|+|+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvE 36 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCE 36 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence 45899999999999999999999999999999
No 313
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.05 E-value=5e-06 Score=75.11 Aligned_cols=41 Identities=41% Similarity=0.592 Sum_probs=37.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
...+++|||||++|++||+.|++.|++|.++| +.+ .+||.-
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVE--Kep------siGGrm 163 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVE--KEP------SIGGRM 163 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEe--cCC------cccccH
Confidence 45689999999999999999999999999999 777 888864
No 314
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.04 E-value=1.7e-05 Score=74.15 Aligned_cols=70 Identities=21% Similarity=0.206 Sum_probs=43.9
Q ss_pred cceeeeeeeccccCC-ccchhhhccC--cceeecc--------cc----CCCCccccEEEECCChHHHHHHHHHHhCCC-
Q psy7665 76 HTPYLVLAKARFLLP-TLECQEVYHD--GRFYDYL--------DN----NFQTYDYDLCVIGGGSGGISAAKEAASMNK- 139 (296)
Q Consensus 76 ~~p~~v~~~~~~~~~-~~~~~~~~~~--~~~~~~~--------~~----~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~- 139 (296)
..+|.+++++|+..+ ....++.... ....+.+ .. .....+.+|+|||||..|+.+|..+.+.|.
T Consensus 227 ~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~ 306 (471)
T PRK12810 227 AEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAK 306 (471)
T ss_pred hhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence 368999999998633 3333332211 1110111 00 011234589999999999999999988885
Q ss_pred cEEEEe
Q psy7665 140 KVALFD 145 (296)
Q Consensus 140 ~V~iiE 145 (296)
+|++++
T Consensus 307 ~Vt~~~ 312 (471)
T PRK12810 307 SVTQRD 312 (471)
T ss_pred eEEEcc
Confidence 788877
No 315
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.03 E-value=8.9e-05 Score=70.79 Aligned_cols=69 Identities=19% Similarity=0.084 Sum_probs=47.5
Q ss_pred cceeeeeeeccccCCccchhhhcc--Cccee--eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 76 HTPYLVLAKARFLLPTLECQEVYH--DGRFY--DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 76 ~~p~~v~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+.++.+|+|+|+.+..++.++... ..... ...... .....+|+|||||+.|+++|..|++.|.+|++++
T Consensus 101 ~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~-~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~ 173 (555)
T TIGR03143 101 YKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGE-FFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIV 173 (555)
T ss_pred EEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChh-hcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEE
Confidence 567889999998765554443221 11111 111111 1234589999999999999999999999999999
No 316
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.03 E-value=6.4e-06 Score=76.90 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=33.1
Q ss_pred cEEEECCChHHHHHHHHHHhC------CCcEEEEeccCCCCCCcccccCCee
Q psy7665 117 DLCVIGGGSGGISAAKEAASM------NKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~------G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
+|+|||||.+|++||++|++. |.+|+|+| ..+ .+||.+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlE--a~~------r~GGr~ 46 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVE--KEE------YLGGKI 46 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEe--cCC------CccceE
Confidence 699999999999999999986 37999999 777 667754
No 317
>KOG2495|consensus
Probab=98.03 E-value=3.9e-05 Score=68.49 Aligned_cols=119 Identities=22% Similarity=0.355 Sum_probs=70.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 193 (296)
.+..|||+|.|.+|++....+-..-++|+++. ..+ ..-=++ ..|+ ...|
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVS--PRn------yFlFTP----LLpS----------------~~vG--- 102 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVS--PRN------YFLFTP----LLPS----------------TTVG--- 102 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEec--ccc------ceEEee----ccCC----------------cccc---
Confidence 45689999999999999999999999999999 433 110000 0000 0000
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE--eCCEEEE-----c--ceeEEEEeCeEEEcCCCCCC
Q psy7665 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV--DKHRVKF-----A--GEERTVSAQNFIIAVGGRPT 264 (296)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~v~v-----~--g~~~~~~a~~vV~AtG~~p~ 264 (296)
.+....+.+....... -+..++.++..+...+ +.+.|++ + ..+..+.+|++|+|+|++++
T Consensus 103 --Tve~rSIvEPIr~i~r---------~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~ 171 (491)
T KOG2495|consen 103 --TVELRSIVEPIRAIAR---------KKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPN 171 (491)
T ss_pred --ceeehhhhhhHHHHhh---------ccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCC
Confidence 1111112211111111 1122566666544333 3455655 2 22457899999999999999
Q ss_pred CCCCCCCccc
Q psy7665 265 YPDIPGARLL 274 (296)
Q Consensus 265 ~p~i~G~~~~ 274 (296)
.++|||..++
T Consensus 172 TFgipGV~e~ 181 (491)
T KOG2495|consen 172 TFGIPGVEEN 181 (491)
T ss_pred CCCCCchhhc
Confidence 9999997643
No 318
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.02 E-value=7.1e-05 Score=68.15 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=27.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCC---CcEEEEeccCCC
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMN---KKVALFDFVTPS 150 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G---~~V~iiE~~~~~ 150 (296)
++|+|||+|++|+.+|.+|.+.- ..+.|+| +..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e--~~~ 37 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFE--PRP 37 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEec--ccc
Confidence 58999999999999999998752 2399999 555
No 319
>PLN02568 polyamine oxidase
Probab=98.02 E-value=7.6e-06 Score=77.49 Aligned_cols=40 Identities=20% Similarity=0.430 Sum_probs=34.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-----CcEEEEeccCCCCCCcccccCCee
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMN-----KKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G-----~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
..||+|||||++|++||.+|++.| ++|+|+| +.+ .+||.+
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E--~~~------~~GGr~ 49 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVE--GGD------RIGGRI 49 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEe--CCC------CcCCeE
Confidence 358999999999999999999887 8999999 666 666654
No 320
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.02 E-value=7.4e-06 Score=77.24 Aligned_cols=32 Identities=47% Similarity=0.678 Sum_probs=30.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..+||+|||||.+|+.+|+.|+++|.+|+|+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlE 36 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCE 36 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 45899999999999999999999999999999
No 321
>PLN02529 lysine-specific histone demethylase 1
Probab=98.01 E-value=8.5e-06 Score=79.28 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=32.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQ 151 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~ 151 (296)
..+||+|||||++|++||..|+++|++|+|+| ..++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E--~~~~ 194 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLE--GRNR 194 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEe--cCcc
Confidence 45699999999999999999999999999999 5553
No 322
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.01 E-value=9.8e-06 Score=74.84 Aligned_cols=55 Identities=15% Similarity=0.124 Sum_probs=50.0
Q ss_pred CcceeecCCCCeEEEEEEEcCC-hhHHHHHHHHHHHcCCCHHHHccCcC-CCCChHH
Q psy7665 2 SLPKLGGSEVSTFITAEISSNN-AGEITQGYALGVMLGAYKQDFDALIG-IHPTCAE 56 (296)
Q Consensus 2 ~~~~~~~~~~~~ilG~~~~g~~-a~e~i~~~~~~~~~~~~k~~l~~~i~-~~pt~~e 56 (296)
.+|+++|++|++|||++++|++ ++|+|+.++++|+++++.++|.++++ ++|.+..
T Consensus 362 ~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~ 418 (427)
T TIGR03385 362 HLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSR 418 (427)
T ss_pred EEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCC
Confidence 3689999999999999999999 99999999999999999999999985 6676654
No 323
>PLN02676 polyamine oxidase
Probab=97.98 E-value=8.6e-06 Score=76.38 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=32.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPSQ 151 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~~ 151 (296)
..+||+|||||++|+.||++|++.|. +|+|+| +.++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE--~~~~ 61 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILE--ATDR 61 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEec--CCCC
Confidence 45699999999999999999999998 699999 6663
No 324
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.94 E-value=5.2e-05 Score=73.69 Aligned_cols=69 Identities=22% Similarity=0.201 Sum_probs=45.5
Q ss_pred ceeeeeeeccccCC-ccchhhhccCc--ceeeccc----cCCCCccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 77 TPYLVLAKARFLLP-TLECQEVYHDG--RFYDYLD----NNFQTYDYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 77 ~p~~v~~~~~~~~~-~~~~~~~~~~~--~~~~~~~----~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
.+|+|++++|+... ..+.++.+... ...+.+. ......+.+|+|||||..|+.+|..+.+.|. +|+++.
T Consensus 278 ~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~ 354 (652)
T PRK12814 278 EFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILY 354 (652)
T ss_pred hcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEee
Confidence 48999999997653 23333322111 1112221 1112245689999999999999999999996 699998
No 325
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.93 E-value=1.2e-05 Score=77.60 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=30.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..+||+|||||..|+.+|+.|+++|++|+|+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE 101 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVE 101 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 45899999999999999999999999999999
No 326
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.91 E-value=1.3e-05 Score=75.13 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASM--NKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE 145 (296)
+||+|||||.+|+++|++|++. |.+|+|+|
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlE 32 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIE 32 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEE
Confidence 5999999999999999999997 99999999
No 327
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.90 E-value=1e-05 Score=70.84 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=27.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-CcEEEEecc
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMN-KKVALFDFV 147 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~ 147 (296)
||+||||+|++|+.+|.+|++.| .+|+|+|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG 33 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAG 33 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcc
Confidence 79999999999999999999997 699999943
No 328
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.89 E-value=1.4e-05 Score=73.19 Aligned_cols=32 Identities=47% Similarity=0.695 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+||+|||+|++|+.+|..++++|.+|+++|+
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~ 33 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAK 33 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEC
Confidence 57999999999999999999999999999993
No 329
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.89 E-value=6.4e-05 Score=65.20 Aligned_cols=45 Identities=33% Similarity=0.525 Sum_probs=37.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVN 164 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~ 164 (296)
..+||+|||+|.+|+.+|.+|+.+|++|+|+| +..+ ..+||+..+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ild--QEge----qnlGGQAfW 48 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILD--QEGE----QNLGGQAFW 48 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEc--cccc----ccccceeee
Confidence 35699999999999999999999999999999 3321 177886544
No 330
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.88 E-value=1.5e-05 Score=72.95 Aligned_cols=38 Identities=34% Similarity=0.626 Sum_probs=34.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCee
Q psy7665 117 DLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
.|+|||||.+||+||++|++++ .+++|+| +.+ .+||..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE--~~~------r~GG~l 41 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFE--ADD------RVGGLL 41 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEe--cCC------CCCceE
Confidence 5899999999999999999999 9999999 667 777754
No 331
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.88 E-value=0.0001 Score=68.86 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=28.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
+..|+|||+|..|+.+|..+.+.|. +|+|++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~ 313 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAY 313 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 4689999999999999999999995 799999
No 332
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.88 E-value=1.8e-05 Score=74.12 Aligned_cols=32 Identities=25% Similarity=0.574 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
+|+|||||.+|+++|++|++.|++|+|+| +.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E--~~~ 32 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYE--SRS 32 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEE--ecC
Confidence 58999999999999999999999999999 666
No 333
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.88 E-value=1.6e-05 Score=74.96 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
|||+|||+||+|+.+|+.|++.|++|++|| +..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e--~~~ 33 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVE--IGA 33 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEe--ccC
Confidence 699999999999999999999999999999 555
No 334
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.87 E-value=5.4e-05 Score=71.06 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+|+|||+|.+|+++|..|+++|++|+++|
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 379999999999999999999999999999
No 335
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.87 E-value=4.4e-05 Score=68.76 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=68.5
Q ss_pred CCcEEEEeccCCCCCCccccc--CCeeeccCCCchh-HH-HH------------hhhhHHHhhcccccCccccccCCHHH
Q psy7665 138 NKKVALFDFVTPSQHGTVWGL--GGTCVNVGCIPKK-LF-HR------------ASLLNEEATTSDNFGFHMKKSFTWKT 201 (296)
Q Consensus 138 G~~V~iiE~~~~~~~g~~~~~--GG~~~~~~~~p~~-~~-~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~ 201 (296)
|.+|+|+| +++++|+|+.+ ||+|..+..-+.. .. .+ .....+.+.++...|+.....-+..
T Consensus 1 g~~V~ilE--kn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~gr- 77 (376)
T TIGR03862 1 GLEVDVFE--AKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGR- 77 (376)
T ss_pred CCeEEEEe--CCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCE-
Confidence 57899999 89999999888 6688554432211 11 11 0112223444555565432100000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE-EEeC--CEEEEcceeEEEEeCeEEEcCCCCC
Q psy7665 202 LVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV-FVDK--HRVKFAGEERTVSAQNFIIAVGGRP 263 (296)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~--~~v~v~g~~~~~~a~~vV~AtG~~p 263 (296)
+. .....+.+....+...+++.||+++.+... .+.+ +.+.+..+...+.||+||+|||+.+
T Consensus 78 vf-P~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 78 VF-PVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred EC-CCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 00 011233445556677788899999876542 2322 3444432224689999999999864
No 336
>KOG2755|consensus
Probab=97.86 E-value=4.9e-05 Score=63.69 Aligned_cols=29 Identities=31% Similarity=0.654 Sum_probs=25.4
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASM--NKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE 145 (296)
+.+|||||.||.+||.+|+.. ..+++++.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illit 31 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLIT 31 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEe
Confidence 368999999999999999976 56888887
No 337
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.85 E-value=2.5e-05 Score=72.99 Aligned_cols=33 Identities=9% Similarity=0.201 Sum_probs=30.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASM--NKKVALFD 145 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE 145 (296)
+..+||+|||||.+|+++|+.|++. |.+|+|+|
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlE 38 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVE 38 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEE
Confidence 3567999999999999999999998 89999999
No 338
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.84 E-value=2.1e-05 Score=73.76 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=29.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE 145 (296)
..+||+|||||..|+++|++|++. |.+|+|+|
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlE 37 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFE 37 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 457999999999999999999985 78999999
No 339
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.82 E-value=2.9e-05 Score=76.12 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=33.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQH 152 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~ 152 (296)
...+|+|||||++|+.||++|++.|++|+|+| +.+++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E--~~~r~ 273 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLE--GRARP 273 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--ccccC
Confidence 45699999999999999999999999999999 66644
No 340
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.81 E-value=3.3e-05 Score=72.61 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=33.0
Q ss_pred cccEEEECCChHHHHHHHHHHhC----CCcEEEEeccCCCCCCcc
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASM----NKKVALFDFVTPSQHGTV 155 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~----G~~V~iiE~~~~~~~g~~ 155 (296)
..+++|||||.+|++||.+|.+. |.+|+|+| +.+.+|.+
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlE--k~~~~GG~ 64 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILE--ELDVPGGS 64 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEe--CCCCCCCC
Confidence 45899999999999999999995 68999999 77744443
No 341
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.78 E-value=0.00016 Score=64.48 Aligned_cols=32 Identities=25% Similarity=0.150 Sum_probs=29.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMN-KKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE 145 (296)
..+|++.||-||.-+..|..+.+.+ .+.+.+|
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLe 36 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLE 36 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEe
Confidence 4679999999999999999999876 7899999
No 342
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.74 E-value=3.4e-05 Score=66.71 Aligned_cols=33 Identities=24% Similarity=0.585 Sum_probs=30.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
+++||+|||||.+|++||..|+++|+++.|+.+
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~ 33 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNR 33 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 357999999999999999999999999999984
No 343
>PLN02487 zeta-carotene desaturase
Probab=97.72 E-value=4.2e-05 Score=72.74 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=32.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHG 153 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g 153 (296)
..+|+|||||++|+++|+.|+++|++|+|+| +.+..|
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E--~~~~~g 111 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYE--SRPFIG 111 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEe--cCCCCC
Confidence 3599999999999999999999999999999 666333
No 344
>PLN02612 phytoene desaturase
Probab=97.71 E-value=4.4e-05 Score=72.98 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=32.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
...+|+|||||++|+++|++|++.|++|+|+| +.+
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e--~~~ 126 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLE--ARD 126 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEe--cCC
Confidence 45689999999999999999999999999999 555
No 345
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.69 E-value=0.00044 Score=67.40 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=28.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
+.+|+|||||..|+.+|..+.++|. +|+++.
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~ 499 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAY 499 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeE
Confidence 4589999999999999999999996 699998
No 346
>KOG0685|consensus
Probab=97.68 E-value=5.6e-05 Score=68.43 Aligned_cols=40 Identities=23% Similarity=0.483 Sum_probs=33.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-CcEEEEeccCCCCCCcccccCCee
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
..+|||||||.||++||.+|.+.| .+|+|+| ..+ .+||+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE--a~d------RIGGRI 61 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILE--ASD------RIGGRI 61 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEE--ecc------ccCceE
Confidence 348999999999999999999776 5899999 677 666653
No 347
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0028 Score=55.66 Aligned_cols=126 Identities=22% Similarity=0.232 Sum_probs=78.4
Q ss_pred cceeeeeeeccccCCccchhhhc---c--CcceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 76 HTPYLVLAKARFLLPTLECQEVY---H--DGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 76 ~~p~~v~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
+..++||+|+|...-.+..+... . .+++.. -+. ...+.+|+|||||.+.+..|++|++.+.+|+++= +.+
T Consensus 102 ~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~-cdg--~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~--r~~ 176 (305)
T COG0492 102 YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCAT-CDG--FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVH--RRD 176 (305)
T ss_pred EEEeEEEECcCCcccCCCCCcchhhcCCceEEeee-cCc--cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEe--cCc
Confidence 55678999988655544433111 0 111111 111 1234499999999999999999999999999998 333
Q ss_pred CCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEE
Q psy7665 151 QHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYF 229 (296)
Q Consensus 151 ~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 229 (296)
.+.. ...+.+.+++. +++++
T Consensus 177 ---------------------------------------------~~ra--------------~~~~~~~l~~~~~i~~~ 197 (305)
T COG0492 177 ---------------------------------------------EFRA--------------EEILVERLKKNVKIEVL 197 (305)
T ss_pred ---------------------------------------------ccCc--------------CHHHHHHHHhcCCeEEE
Confidence 0000 11223344444 77876
Q ss_pred cceE-EEEeC---CEEEE-c--ceeEEEEeCeEEEcCCCCCCC
Q psy7665 230 NAKA-VFVDK---HRVKF-A--GEERTVSAQNFIIAVGGRPTY 265 (296)
Q Consensus 230 ~~~~-~~~~~---~~v~v-~--g~~~~~~a~~vV~AtG~~p~~ 265 (296)
.+.. ..+.. ..+++ + +++..+.++.|.++.|..|..
T Consensus 198 ~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~ 240 (305)
T COG0492 198 TNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNT 240 (305)
T ss_pred eCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCch
Confidence 6533 32322 35555 3 556788999999999998875
No 348
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.66 E-value=0.00035 Score=70.97 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhhcCCC----Cceee-ccceeeeeeecccc-CCccchhhhcc--Ccceeecccc-------------CCC
Q psy7665 54 CAEAISLSWIKGYNIE----PEVIK-LHTPYLVLAKARFL-LPTLECQEVYH--DGRFYDYLDN-------------NFQ 112 (296)
Q Consensus 54 ~~e~l~v~~~~~~~~~----~~~~~-~~~p~~v~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~-------------~~~ 112 (296)
+.+.+++.+++|+.+. .+.+. ....|+||+++|+- +...++++... .....+.+.. ...
T Consensus 489 ~l~~~Gv~~~~~~~vg~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~ 568 (1006)
T PRK12775 489 RLVDIGVKIETNKVIGKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPI 568 (1006)
T ss_pred HHHHCCCEEEeCCccCCccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCc
Confidence 3444556655564332 22222 34589999999973 44444443221 1111111100 001
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCCc-EEEEe
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASMNKK-VALFD 145 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE 145 (296)
..+.+|+|||||..|+.+|..+.+.|.+ |+++.
T Consensus 569 ~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~ 602 (1006)
T PRK12775 569 SLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVY 602 (1006)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 2456899999999999999999999975 77777
No 349
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.66 E-value=5e-05 Score=73.15 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
...+|+|||||++|+++|..|++.|.+|+|||+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence 456999999999999999999999999999994
No 350
>PLN03000 amine oxidase
Probab=97.66 E-value=5.9e-05 Score=74.18 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=32.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
...+|+|||||++|+.+|++|.+.|++|+|+| ..+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE--~~~ 217 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLE--GRK 217 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEE--ccC
Confidence 34699999999999999999999999999999 666
No 351
>KOG4254|consensus
Probab=97.64 E-value=6.1e-05 Score=67.71 Aligned_cols=48 Identities=35% Similarity=0.621 Sum_probs=41.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p 169 (296)
..||++|||+|+.|+.||.+|++.|.+|+++| +.. .+||...+...+|
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vle--rrh------v~gGaavteeivp 60 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLE--RRH------VIGGAAVTEEIVP 60 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEE--Eee------ecCcceeeehhcc
Confidence 57899999999999999999999999999999 555 7788776665555
No 352
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.62 E-value=0.00034 Score=62.61 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=25.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNK--KVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE 145 (296)
....|+|||||.++.+.+..|.+.+. +|.++-
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~ 222 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWIS 222 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEE
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEE
Confidence 56799999999999999999999875 788888
No 353
>KOG2844|consensus
Probab=97.61 E-value=0.0023 Score=60.46 Aligned_cols=30 Identities=43% Similarity=0.434 Sum_probs=26.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.||+|||||.+||.+|++|++.|.+..+++
T Consensus 40 A~vvViggG~~g~~~~yhlak~g~k~avll 69 (856)
T KOG2844|consen 40 ADVVVIGGGSLGCSTAYHLAKRGMKGAVLL 69 (856)
T ss_pred ccEEEEcCCchhHHHHHHHHHccccceEEE
Confidence 599999999999999999999999854444
No 354
>PRK02106 choline dehydrogenase; Validated
Probab=97.60 E-value=6.2e-05 Score=72.03 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=31.4
Q ss_pred ccccEEEECCChHHHHHHHHHHh-CCCcEEEEecc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAAS-MNKKVALFDFV 147 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~-~G~~V~iiE~~ 147 (296)
..||+||||+|++|+.+|.+|++ .|++|+|+|++
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG 38 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG 38 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCC
Confidence 45899999999999999999999 89999999944
No 355
>PLN02976 amine oxidase
Probab=97.57 E-value=0.0001 Score=75.50 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=32.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
..++|+|||||++|+.+|++|++.|++|+|+| +.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlE--a~~ 726 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLE--ARS 726 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEe--ecc
Confidence 45799999999999999999999999999999 666
No 356
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.54 E-value=0.00011 Score=68.48 Aligned_cols=35 Identities=40% Similarity=0.616 Sum_probs=33.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
..+||+|||||..|+-+|+.++.+|++|+|+| +.+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE--~~D 45 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVE--KGD 45 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEe--cCc
Confidence 67899999999999999999999999999999 665
No 357
>PRK13984 putative oxidoreductase; Provisional
Probab=97.51 E-value=0.00034 Score=67.60 Aligned_cols=70 Identities=21% Similarity=0.241 Sum_probs=42.1
Q ss_pred cceeeeeeeccccCC-ccchhhhccC--cceeeccc-------cC--CCCccccEEEECCChHHHHHHHHHHhCCC----
Q psy7665 76 HTPYLVLAKARFLLP-TLECQEVYHD--GRFYDYLD-------NN--FQTYDYDLCVIGGGSGGISAAKEAASMNK---- 139 (296)
Q Consensus 76 ~~p~~v~~~~~~~~~-~~~~~~~~~~--~~~~~~~~-------~~--~~~~~~dVvVIGgG~aG~~aA~~l~~~G~---- 139 (296)
..+|++|+++|+..+ ..++++.... ....+.+. .. ......+|+|||||..|+.+|..+++.+.
T Consensus 367 ~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g 446 (604)
T PRK13984 367 EKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYG 446 (604)
T ss_pred hcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccC
Confidence 468999999997532 2233322211 11111111 00 01124589999999999999999998753
Q ss_pred --cEEEEe
Q psy7665 140 --KVALFD 145 (296)
Q Consensus 140 --~V~iiE 145 (296)
+|+++.
T Consensus 447 ~~~V~v~~ 454 (604)
T PRK13984 447 EVNVKVTS 454 (604)
T ss_pred ceEEEEec
Confidence 677764
No 358
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.50 E-value=0.00011 Score=68.77 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=29.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMN--KKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE 145 (296)
..+||+|||||..|+++|++|++.+ .+|+|+|
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlE 77 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIE 77 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEe
Confidence 5689999999999999999999963 6999999
No 359
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.48 E-value=0.00097 Score=63.17 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=42.4
Q ss_pred ceeeeeeeccccCC-ccc---hhhhc--cCccee-eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 77 TPYLVLAKARFLLP-TLE---CQEVY--HDGRFY-DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 77 ~p~~v~~~~~~~~~-~~~---~~~~~--~~~~~~-~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..|+|++++|.... ..| .++.+ +...+. .-.+.+....+.+|+|||+|.+|+..|..|++...+|.+.-
T Consensus 138 ~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~ 213 (531)
T PF00743_consen 138 EFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLST 213 (531)
T ss_dssp EECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEEC
T ss_pred EeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEE
Confidence 46889999996321 111 22222 111110 00112223356799999999999999999999999998887
No 360
>KOG2852|consensus
Probab=97.48 E-value=0.0025 Score=54.45 Aligned_cols=30 Identities=20% Similarity=0.455 Sum_probs=28.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCC------CcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMN------KKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G------~~V~iiE 145 (296)
.+|+|+|||..|+.+|++|++++ .+++|||
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifE 46 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFE 46 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEe
Confidence 58999999999999999999997 7899999
No 361
>KOG1276|consensus
Probab=97.43 E-value=0.00018 Score=64.44 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=30.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcE--EEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKV--ALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V--~iiE~~~~~ 150 (296)
...+|+|+|||.+|+++|++|++++-++ +|+| ..+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~E--a~~ 46 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFE--ASP 46 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEe--cCC
Confidence 4569999999999999999999998765 6699 777
No 362
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.36 E-value=0.0025 Score=62.02 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=28.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
.+.+|+|||+|..|+.+|..+.+.|. +|++++
T Consensus 450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~ 482 (639)
T PRK12809 450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAY 482 (639)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEee
Confidence 34689999999999999999999994 799998
No 363
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.00027 Score=61.29 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=31.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCc
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGT 154 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~ 154 (296)
.|-|||||.||.+||++++++|.+|.++| +.+..++
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~E--MRp~k~T 40 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYE--MRPVKGT 40 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEE--cccccCC
Confidence 68899999999999999999999999999 6664443
No 364
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.31 E-value=0.0041 Score=56.78 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=31.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~ 150 (296)
..+|||+||||..|.+.+..|++. ..++.|+| +.+
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~E--rl~ 38 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFE--RLD 38 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEE--ecC
Confidence 457999999999999999999987 47999999 555
No 365
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00022 Score=67.84 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=31.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV 147 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~ 147 (296)
..+|+||||+|.+|+.+|.+|+..|++|+|+|.+
T Consensus 6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred CCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 5689999999999999999999999999999944
No 366
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.26 E-value=0.00062 Score=55.93 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=39.7
Q ss_pred ccceeeeeeeccc--cCCccchhh-hccCcce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 75 LHTPYLVLAKARF--LLPTLECQE-VYHDGRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 75 ~~~p~~v~~~~~~--~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+..+.||+|+|. .|..+..+. ... ..+ .+. .......+.+|+|||+|.+++.+|..|++.|.+|+++-
T Consensus 124 ~~~a~~VVlAtG~~~~p~~p~~~g~~~~-~~~h~~~~-~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~ 197 (203)
T PF13738_consen 124 TIRADRVVLATGHYSHPRIPDIPGSAFR-PIIHSADW-RDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVT 197 (203)
T ss_dssp EEEEEEEEE---SSCSB---S-TTGGCS-EEEEGGG--STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEE
T ss_pred eeeeeeEEEeeeccCCCCcccccccccc-ceEehhhc-CChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEe
Confidence 4558899999995 332333333 111 111 111 11112245689999999999999999999999999998
No 367
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.24 E-value=0.00035 Score=63.66 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
|||+|||||++|+.+|..+++.|++|+|+|+
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~ 31 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAA 31 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeC
Confidence 5899999999999999999999999999993
No 368
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.22 E-value=0.00029 Score=67.02 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEecc
Q psy7665 117 DLCVIGGGSGGISAAKEAASMN-KKVALFDFV 147 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~ 147 (296)
|+||||||.+|+.+|.+|++.| ++|+|+|++
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG 32 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAG 32 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecC
Confidence 7999999999999999999998 699999954
No 369
>KOG2853|consensus
Probab=97.20 E-value=0.00046 Score=60.18 Aligned_cols=49 Identities=31% Similarity=0.544 Sum_probs=37.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhC----CCcEEEEeccCCC---CCCcccccCCeeec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM----NKKVALFDFVTPS---QHGTVWGLGGTCVN 164 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~----G~~V~iiE~~~~~---~~g~~~~~GG~~~~ 164 (296)
..+||+|||||.+|.+.|+.|.++ |.+|+++| +.+ +.-+-.++||.|-+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVE--rddtytqssT~lSvGGi~QQ 140 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVE--RDDTYTQSSTMLSVGGICQQ 140 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEe--ccCcccccceeeeecceeee
Confidence 568999999999999999999764 79999999 333 22233456888854
No 370
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.14 E-value=0.0025 Score=63.63 Aligned_cols=82 Identities=18% Similarity=0.079 Sum_probs=52.6
Q ss_pred hhcCCCCceeeccceeeeeeeccc-cCCccchhhhccC--cceeecccc------------CCCCccccEEEECCChHHH
Q psy7665 64 KGYNIEPEVIKLHTPYLVLAKARF-LLPTLECQEVYHD--GRFYDYLDN------------NFQTYDYDLCVIGGGSGGI 128 (296)
Q Consensus 64 ~~~~~~~~~~~~~~p~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~~dVvVIGgG~aG~ 128 (296)
++..+|.+.+....+|+|++++|+ .+...++++.+.. ....+.+.. .....+..|||||||..|+
T Consensus 484 lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAm 563 (1028)
T PRK06567 484 LDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSL 563 (1028)
T ss_pred ECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHH
Confidence 456678888878889999999998 4555555543321 111221111 0001245899999999999
Q ss_pred HHHHHHHh---CCCcEEEEe
Q psy7665 129 SAAKEAAS---MNKKVALFD 145 (296)
Q Consensus 129 ~aA~~l~~---~G~~V~iiE 145 (296)
.+|..+.. .+..+.+.+
T Consensus 564 D~ArtAlr~~~l~ve~~l~~ 583 (1028)
T PRK06567 564 DAATESLYYYKKQVEEFAKD 583 (1028)
T ss_pred HHHHHHHhhccchhhHHHHh
Confidence 99986654 355666666
No 371
>PLN02785 Protein HOTHEAD
Probab=97.12 E-value=0.00049 Score=66.00 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=30.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV 147 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~ 147 (296)
..||+||||||.+||.+|.+|++ +.+|+|+|++
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G 86 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERG 86 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecC
Confidence 46899999999999999999999 6999999944
No 372
>KOG2960|consensus
Probab=97.10 E-value=0.00016 Score=58.85 Aligned_cols=31 Identities=39% Similarity=0.618 Sum_probs=27.9
Q ss_pred cccEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASM--NKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE 145 (296)
..||+|||+|.+|+++|+.++++ ..+|.|+|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE 108 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIE 108 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEE
Confidence 35999999999999999999865 58899999
No 373
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.05 E-value=0.012 Score=53.38 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=28.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhC-----CCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM-----NKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~-----G~~V~iiE 145 (296)
..+||++||+|++|+.+|+.++.. .+++.++|
T Consensus 17 ~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd 53 (486)
T COG2509 17 AALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVD 53 (486)
T ss_pred hccceEEECCCchHHHHHHHHhhhcccCCceEEEEEE
Confidence 568999999999999999999864 57899999
No 374
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.01 Score=52.20 Aligned_cols=33 Identities=36% Similarity=0.658 Sum_probs=30.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
.+.||+|||||.+|.+||.-|+-.=..|+++|+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF 385 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF 385 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeec
Confidence 567999999999999999999988889999993
No 375
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.87 E-value=0.0039 Score=58.00 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=29.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+.+|+|+|+|..|+.+|..|++.|++|+++|
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d 35 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTD 35 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3479999999999999999999999999999
No 376
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.84 E-value=0.0011 Score=58.09 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=28.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
..+|+|||+|.+|++||+.|++ -++|+++| ...
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~-rhdVTLfE--A~~ 40 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSR-RHDVTLFE--ADR 40 (447)
T ss_pred CcceEEEcccchhhhhHHhhhc-ccceEEEe--ccc
Confidence 3489999999999999999876 48999999 666
No 377
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.84 E-value=0.0044 Score=56.48 Aligned_cols=28 Identities=29% Similarity=0.646 Sum_probs=23.9
Q ss_pred EEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665 118 LCVIGGGSGGISAAKEAASMN--KKVALFD 145 (296)
Q Consensus 118 VvVIGgG~aG~~aA~~l~~~G--~~V~iiE 145 (296)
++|||+|++|+.+|..+++.. .+++++.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~ 30 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIG 30 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEe
Confidence 589999999999999988854 5787777
No 378
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.80 E-value=0.0049 Score=57.54 Aligned_cols=29 Identities=34% Similarity=0.350 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|+|||.|++|+++|..|+++|++|+++|
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSD 30 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEEC
Confidence 58999999999999999999999999999
No 379
>KOG0042|consensus
Probab=96.75 E-value=0.0024 Score=58.93 Aligned_cols=35 Identities=34% Similarity=0.591 Sum_probs=32.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~ 150 (296)
..+||+|||||..|.-||+-++-+|++|.++| ..+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE--~~D 100 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVE--AGD 100 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEe--ccc
Confidence 56899999999999999999999999999999 555
No 380
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.70 E-value=0.0095 Score=57.17 Aligned_cols=134 Identities=19% Similarity=0.184 Sum_probs=67.4
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeecc-----CCCch-----------------hHHHHhhhhHHHhhc
Q psy7665 128 ISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNV-----GCIPK-----------------KLFHRASLLNEEATT 185 (296)
Q Consensus 128 ~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~-----~~~p~-----------------~~~~~~~~~~~~~~~ 185 (296)
+.||+.+++.|.+|+|+||.....-++.+.-||..... ...+. .+........+.+.+
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~~ 80 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE 80 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999943221111122223322111 11111 111122334556677
Q ss_pred ccccCccccccCCH----HHHHHH----------------HHHHHHHHHHHHHHHHHHCCcEEEcceE--EEE-e-CCEE
Q psy7665 186 SDNFGFHMKKSFTW----KTLVDN----------------VQKYIRNLNNNYEKELEKNKIDYFNAKA--VFV-D-KHRV 241 (296)
Q Consensus 186 ~~~~g~~~~~~~~~----~~~~~~----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~-~-~~~v 241 (296)
+..+|++++...+. .....+ ....-..+...+.+.+.+.+++++.... ..+ + +..|
T Consensus 81 L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v 160 (570)
T PRK05675 81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAV 160 (570)
T ss_pred HHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeE
Confidence 77788877531110 000000 0001123344455556667999887643 222 2 2232
Q ss_pred ---EE----cceeEEEEeCeEEEcCCC
Q psy7665 242 ---KF----AGEERTVSAQNFIIAVGG 261 (296)
Q Consensus 242 ---~v----~g~~~~~~a~~vV~AtG~ 261 (296)
.. ++....+.|+.||+|||.
T Consensus 161 ~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 161 VGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred EEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 22 354567899999999996
No 381
>KOG2665|consensus
Probab=96.66 E-value=0.0015 Score=56.55 Aligned_cols=38 Identities=34% Similarity=0.561 Sum_probs=32.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCC
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHG 153 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g 153 (296)
..||.||||||.+|++.|++|.-+ +.+|.|+| +..+.+
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vle--ke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLE--KEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeee--hhhhhc
Confidence 578999999999999999999877 89999999 555333
No 382
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.63 E-value=0.012 Score=52.75 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=19.8
Q ss_pred cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665 244 AGEERTVSAQNFIIAVGGRPTYPD 267 (296)
Q Consensus 244 ~g~~~~~~a~~vV~AtG~~p~~p~ 267 (296)
.++..++..|.||+|||.+...|.
T Consensus 321 ~~~~~t~~~D~vIlATGY~~~~P~ 344 (436)
T COG3486 321 TGELETVETDAVILATGYRRAVPS 344 (436)
T ss_pred CCCceEEEeeEEEEecccccCCch
Confidence 455678899999999999877774
No 383
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.50 E-value=0.062 Score=51.59 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=42.6
Q ss_pred ceeeeeeeccccCCcc-chhhhccCc--ceeecccc----CCCCccccEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665 77 TPYLVLAKARFLLPTL-ECQEVYHDG--RFYDYLDN----NFQTYDYDLCVIGGGSGGISAAKEAASMN-KKVALFD 145 (296)
Q Consensus 77 ~p~~v~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~----~~~~~~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE 145 (296)
.+|.|+.++|...... ......... ...+++.. ........|+|||+|..|+.+|..+.+.| .+|+|+.
T Consensus 222 ~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~ 298 (564)
T PRK12771 222 EFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVY 298 (564)
T ss_pred hCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEE
Confidence 4789999999654321 221111111 11111110 11123568999999999999999999998 6788888
No 384
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.46 E-value=0.0041 Score=57.22 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=33.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV 163 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~ 163 (296)
..|||+|+|.|..-+..|..|++.|++|+-+| +++ .-||.|.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD--~n~------yYGg~~a 44 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHID--RND------YYGGEWA 44 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE---SSS------SSCGGG-
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecC--CCC------CcCCchh
Confidence 57999999999999999999999999999999 777 8899873
No 385
>KOG1238|consensus
Probab=96.31 E-value=0.0038 Score=58.99 Aligned_cols=33 Identities=33% Similarity=0.538 Sum_probs=30.4
Q ss_pred CccccEEEECCChHHHHHHHHHHhC-CCcEEEEe
Q psy7665 113 TYDYDLCVIGGGSGGISAAKEAASM-NKKVALFD 145 (296)
Q Consensus 113 ~~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE 145 (296)
...||.+|||||.|||..|.+|++. ..+|+|+|
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLE 88 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLE 88 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEe
Confidence 4679999999999999999999987 58999999
No 386
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.15 E-value=0.0068 Score=47.89 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||||..|.++|..|+++|++|.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~ 29 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWG 29 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEe
Confidence 58999999999999999999999999999
No 387
>KOG3855|consensus
Probab=96.10 E-value=0.0062 Score=54.56 Aligned_cols=32 Identities=41% Similarity=0.706 Sum_probs=28.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhC----CCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASM----NKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~----G~~V~iiE 145 (296)
..|||+|+||||+|...|..|... .++|.|+|
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld 70 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLD 70 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEe
Confidence 478999999999999999999854 46899999
No 388
>KOG1346|consensus
Probab=96.08 E-value=0.02 Score=51.52 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=29.9
Q ss_pred HHHHHHCCcEEEcceEEE---EeCCEE--EE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665 218 EKELEKNKIDYFNAKAVF---VDKHRV--KF-AGEERTVSAQNFIIAVGGRPTY 265 (296)
Q Consensus 218 ~~~~~~~~v~~~~~~~~~---~~~~~v--~v-~g~~~~~~a~~vV~AtG~~p~~ 265 (296)
...+++.||.++.+.... .....+ .. +| .++..|.||+|+|-.|+.
T Consensus 400 ~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG--~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 400 IEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDG--SELRTDLVVVAVGEEPNS 451 (659)
T ss_pred HHHHHhcCceeccchhhhhhhhhccceEEEecCC--CeeeeeeEEEEecCCCch
Confidence 344566788887653311 122223 33 67 789999999999988765
No 389
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.03 E-value=0.00047 Score=64.41 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=43.0
Q ss_pred cCCCCceeeccceeeeeeeccccCC-ccchhhhcc--Ccceeecc---cc-------C-CCCccccEEEECCChHHHHHH
Q psy7665 66 YNIEPEVIKLHTPYLVLAKARFLLP-TLECQEVYH--DGRFYDYL---DN-------N-FQTYDYDLCVIGGGSGGISAA 131 (296)
Q Consensus 66 ~~~~~~~~~~~~p~~v~~~~~~~~~-~~~~~~~~~--~~~~~~~~---~~-------~-~~~~~~dVvVIGgG~aG~~aA 131 (296)
..++.+.+.. .+|+||+++|..+. ..++++... .....+++ .. . ....+.+|+|||+|.+|+.+|
T Consensus 104 ~dvtl~~L~~-~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~A 182 (491)
T PLN02852 104 RDVSLSELRD-LYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCA 182 (491)
T ss_pred ccccHHHHhh-hCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHH
Confidence 4455666653 69999999998653 333333221 11111111 00 0 011345899999999999999
Q ss_pred HHHHhC
Q psy7665 132 KEAASM 137 (296)
Q Consensus 132 ~~l~~~ 137 (296)
..|.+.
T Consensus 183 r~L~~~ 188 (491)
T PLN02852 183 RILLRP 188 (491)
T ss_pred HHHHhC
Confidence 999886
No 390
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.00 E-value=0.0085 Score=48.72 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=25.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||.|..|+.+|..+++.|++|+.+|
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D 30 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVD 30 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEe
Confidence 69999999999999999999999999999
No 391
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.022 Score=52.85 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=45.7
Q ss_pred cceeeeeeecccc--CCccchhhhc--cCcce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 76 HTPYLVLAKARFL--LPTLECQEVY--HDGRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 76 ~~p~~v~~~~~~~--~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+.++.|++++|.. |-.+...+.+ +...+ .+. .......+.+|+|||+|.+|+..|..|++.|.+|+++=
T Consensus 131 ~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~-~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~q 205 (443)
T COG2072 131 LTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADW-PNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQ 205 (443)
T ss_pred EecCEEEEeecCCCCCCCCCCCCccCCCceEEchhcC-CCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEe
Confidence 5589999999962 2222222211 11111 111 11223356799999999999999999999999999998
No 392
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.70 E-value=0.0088 Score=56.26 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=44.3
Q ss_pred cceeeeeeecccc-CCccchhhhcc--Ccceeecc--------cc------CCCCccccEEEECCChHHHHHHHHHHhCC
Q psy7665 76 HTPYLVLAKARFL-LPTLECQEVYH--DGRFYDYL--------DN------NFQTYDYDLCVIGGGSGGISAAKEAASMN 138 (296)
Q Consensus 76 ~~p~~v~~~~~~~-~~~~~~~~~~~--~~~~~~~~--------~~------~~~~~~~dVvVIGgG~aG~~aA~~l~~~G 138 (296)
..+|+|++++|.. +..+++++... .....+.+ .. ........|+|||||..|+.+|..+.+.|
T Consensus 227 ~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~g 306 (485)
T TIGR01317 227 EQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHG 306 (485)
T ss_pred hhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcC
Confidence 4689999999986 33344333221 11111110 00 00123468999999999999998888887
Q ss_pred -CcEEEEe
Q psy7665 139 -KKVALFD 145 (296)
Q Consensus 139 -~~V~iiE 145 (296)
.+|+++|
T Consensus 307 a~~V~vv~ 314 (485)
T TIGR01317 307 AASVHQFE 314 (485)
T ss_pred CCEEEEEE
Confidence 4799999
No 393
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.64 E-value=0.016 Score=46.85 Aligned_cols=29 Identities=34% Similarity=0.477 Sum_probs=26.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|..|...|..++..|++|+++|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d 29 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYD 29 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Confidence 48999999999999999999999999999
No 394
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.017 Score=48.47 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+++|||+|..|...|..|.+.|++|+++|
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id 30 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLID 30 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEE
Confidence 69999999999999999999999999999
No 395
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.58 E-value=0.013 Score=53.48 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 125 SGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 125 ~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
.|||+||++|+++|++|+|+| +.+ .+||.+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlE--a~~------r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLE--ASD------RVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEE--SSS------SSBTTS
T ss_pred ChHHHHHHHHHhCCCCEEEEE--cCC------CCCcce
Confidence 489999999999999999999 777 666654
No 396
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.56 E-value=0.01 Score=43.25 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=28.9
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+..|+|||||.+|..-+..|.+.|.+|+|+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis 37 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVIS 37 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEC
Confidence 4589999999999999999999999999998
No 397
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.45 E-value=0.023 Score=44.28 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=27.2
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 118 LCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 118 VvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
|+|+|+|..|+..|.+|++.|++|.++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~ 28 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVS 28 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEE
Confidence 6899999999999999999999999999
No 398
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.41 E-value=0.023 Score=46.99 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..|+|||||.+|...+..|.+.|.+|+|++
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 489999999999999999999999999998
No 399
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.37 E-value=0.026 Score=44.60 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=29.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+..|+|||||.+|..-+..|.+.|.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4489999999999999999999999999997
No 400
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.22 E-value=0.062 Score=47.36 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=26.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|+|+|..|+..|++|++.|.+|+++-
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~ 30 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLV 30 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEe
Confidence 68999999999999999999997787776
No 401
>KOG0399|consensus
Probab=95.18 E-value=0.0041 Score=62.09 Aligned_cols=109 Identities=15% Similarity=0.104 Sum_probs=64.3
Q ss_pred hHHHHHHHHHhhcCCCCc----eeeccceeeeeeeccccCCcc-chhhhccC--cc------------eeeccccC-CCC
Q psy7665 54 CAEAISLSWIKGYNIEPE----VIKLHTPYLVLAKARFLLPTL-ECQEVYHD--GR------------FYDYLDNN-FQT 113 (296)
Q Consensus 54 ~~e~l~v~~~~~~~~~~~----~~~~~~p~~v~~~~~~~~~~~-~~~~~~~~--~~------------~~~~~~~~-~~~ 113 (296)
+.+.-++.+..|+++-.. .+++ .-|+|+.++|+..+.+ +.++.+.. .. +.+.++.. ...
T Consensus 1844 ll~~egi~f~tn~eigk~vs~d~l~~-~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~ 1922 (2142)
T KOG0399|consen 1844 LLEQEGIRFVTNTEIGKHVSLDELKK-ENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISA 1922 (2142)
T ss_pred HHHhhCceEEeeccccccccHHHHhh-ccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceecc
Confidence 445556666677766443 2332 3589999999866643 33332211 11 11111111 012
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCCCCCcccccCCeeecc
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPSQHGTVWGLGGTCVNV 165 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~~~g~~~~~GG~~~~~ 165 (296)
.+.+|+|||||-.|-.|--..-++|. +|.-+| -.+.++..-..+-.|..+
T Consensus 1923 ~gkkvivigggdtg~dcigtsvrhg~~sv~n~e--llp~pp~~ra~~npwpqw 1973 (2142)
T KOG0399|consen 1923 KGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFE--LLPQPPPERAPDNPWPQW 1973 (2142)
T ss_pred CCCeEEEECCCCccccccccchhhccceeccee--ecCCCCcccCCCCCCccC
Confidence 46799999999999998888888884 678888 555555544555556444
No 402
>KOG0404|consensus
Probab=95.08 E-value=0.19 Score=41.66 Aligned_cols=70 Identities=19% Similarity=0.068 Sum_probs=44.2
Q ss_pred cceeeeeeeccccCCccchhhh-ccCcceeecc-----ccC-CCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 76 HTPYLVLAKARFLLPTLECQEV-YHDGRFYDYL-----DNN-FQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 76 ~~p~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~-~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
...|+||.++|+......-++. +...|-..+- +.. +...+.-.+|||||-+.|+-|.+|.+-+.+|-|+-
T Consensus 111 v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~ 187 (322)
T KOG0404|consen 111 VTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIH 187 (322)
T ss_pred eeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEE
Confidence 4568999998865444333222 1111111000 000 01233468999999999999999999999999998
No 403
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.01 E-value=0.061 Score=50.23 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+|+|+|.|.+|+.+|..|++.|++|++.|
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D 44 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFD 44 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEEC
Confidence 379999999999999999999999999999
No 404
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.99 E-value=0.038 Score=45.61 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=29.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+..|+|||||-.|...+..|.+.|.+|+|++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 3489999999999999999999999999998
No 405
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.97 E-value=0.039 Score=44.06 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=27.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..|+|+|+|.+|..|+..+...|.+|+++|
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d 50 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPD 50 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEE
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEecc
Confidence 589999999999999999999999999999
No 406
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.86 E-value=0.041 Score=47.35 Aligned_cols=31 Identities=35% Similarity=0.535 Sum_probs=29.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMN-KKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE 145 (296)
...|+|||+|.+|+++|..|++.| .+++|+|
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD 61 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLID 61 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEe
Confidence 458999999999999999999999 6899999
No 407
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.84 E-value=0.23 Score=45.77 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=30.2
Q ss_pred HHHHHHHHCCcEEEcceEEE-E--eCCEEEE----cceeEEEEeCeEEEcCCCC
Q psy7665 216 NYEKELEKNKIDYFNAKAVF-V--DKHRVKF----AGEERTVSAQNFIIAVGGR 262 (296)
Q Consensus 216 ~~~~~~~~~~v~~~~~~~~~-~--~~~~v~v----~g~~~~~~a~~vV~AtG~~ 262 (296)
.+...+++.|++++.+.... . ....+.. +++...+.+|.||+|+|..
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 34566677799988764322 1 2333332 3445678999999999964
No 408
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.83 E-value=0.21 Score=48.07 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCcEEEcceE--EEE-eCCEEE---E----cceeEEEEeCeEEEcCCC
Q psy7665 213 LNNNYEKELEKNKIDYFNAKA--VFV-DKHRVK---F----AGEERTVSAQNFIIAVGG 261 (296)
Q Consensus 213 ~~~~~~~~~~~~~v~~~~~~~--~~~-~~~~v~---v----~g~~~~~~a~~vV~AtG~ 261 (296)
+...+...+++.+|+++.... ..+ ++..|. . ++....+.|+.||+|||.
T Consensus 121 i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG 179 (565)
T TIGR01816 121 ILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGG 179 (565)
T ss_pred HHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCC
Confidence 344455656677999877643 122 233322 1 344467899999999996
No 409
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.48 E-value=0.05 Score=48.84 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
++.|||.|.+|+..|..+++.|++|+.+|
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vD 30 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVD 30 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEe
Confidence 68999999999999999999999999999
No 410
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.42 E-value=0.037 Score=47.96 Aligned_cols=31 Identities=35% Similarity=0.561 Sum_probs=29.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.-+|+|||||.+|..+|.-+...|.+|+++|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild 198 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILD 198 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEe
Confidence 3489999999999999999999999999999
No 411
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.36 E-value=0.063 Score=47.30 Aligned_cols=30 Identities=27% Similarity=0.148 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~ 146 (296)
+|+|||+|..|...|.+|++.|.+|+++.+
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r 33 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILR 33 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 799999999999999999999999999993
No 412
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.33 E-value=0.058 Score=41.30 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=27.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
..|+|+|+|..|.+.|..|++.|. +++|+|
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD 33 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVD 33 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecC
Confidence 479999999999999999999997 799999
No 413
>KOG3923|consensus
Probab=94.32 E-value=0.25 Score=42.75 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-------CcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMN-------KKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G-------~~V~iiE 145 (296)
.+|+|||+|..||++|..+.+.+ .+|++++
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~ 40 (342)
T KOG3923|consen 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVIS 40 (342)
T ss_pred ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEec
Confidence 48999999999999999988854 4688887
No 414
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.28 E-value=0.058 Score=47.57 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|..|...|..|++.|++|+++|
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d 32 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWD 32 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEe
Confidence 69999999999999999999999999999
No 415
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=94.26 E-value=0.13 Score=47.64 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHhC----CCcEEEEeccCCCCCCc
Q psy7665 117 DLCVIGGGSGGISAAKEAASM----NKKVALFDFVTPSQHGT 154 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~----G~~V~iiE~~~~~~~g~ 154 (296)
++=|||+|.|+|+||.+|-+- |.+++|+| ..+.+|.
T Consensus 4 ~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE--~~~~~GG 43 (500)
T PF06100_consen 4 KAYIVGSGIASLAAAVFLIRDAKMPGENIHILE--ELDVPGG 43 (500)
T ss_pred eEEEECCCHHHHHhhhhhhccCCCCccceEEEe--CCCCCCC
Confidence 678999999999999999886 56999999 6773333
No 416
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.24 E-value=0.064 Score=47.07 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|+|||+|..|+..|..|++.|++|++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~ 30 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLV 30 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEe
Confidence 58999999999999999999999999999
No 417
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.12 E-value=0.071 Score=46.52 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|..|...|..+++.|++|+++|
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d 33 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYD 33 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEe
Confidence 79999999999999999999999999999
No 418
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.93 E-value=0.081 Score=46.16 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|..|...|..+++.|++|+++|
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d 31 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVD 31 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEe
Confidence 69999999999999999999999999999
No 419
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.92 E-value=0.072 Score=40.97 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=26.1
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 118 LCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 118 VvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
++|+|+|+.+...+..++..|++|+++|
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d 28 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVD 28 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEE
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEc
Confidence 5899999999999999999999999999
No 420
>PRK04148 hypothetical protein; Provisional
Probab=93.89 E-value=0.062 Score=41.01 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=27.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.++++||.| .|...|..|++.|++|+.+|
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaID 46 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVID 46 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEE
Confidence 479999999 99999999999999999999
No 421
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.87 E-value=0.078 Score=49.89 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=29.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..+|+|+|+|++|+.++..++..|.+|+++|
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D 195 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFD 195 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEe
Confidence 4589999999999999999999999999999
No 422
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.83 E-value=0.092 Score=43.24 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=28.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
..+|+|||+|-.|...|..|++.|. +++++|
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD 52 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVD 52 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEC
Confidence 3489999999999999999999998 699999
No 423
>KOG4405|consensus
Probab=93.76 E-value=0.079 Score=47.66 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=38.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeec
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVN 164 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~ 164 (296)
..+||||||.|..=...|...++.|.+|+=+| +++ ..||.|..
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlD--sn~------yYGg~waS 49 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLD--SNE------YYGGNWAS 49 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEecc--Ccc------ccCCcccc
Confidence 56899999999999889999999999999999 777 88998853
No 424
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.75 E-value=0.09 Score=46.06 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|+|||+|..|...|..|++.|++|++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~ 30 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVA 30 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 58999999999999999999999999999
No 425
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.75 E-value=0.089 Score=45.92 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.|.|||+|..|...|..++..|++|+++|
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d 35 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFE 35 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEE
Confidence 79999999999999999999999999999
No 426
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.64 E-value=0.097 Score=46.39 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..|.|||+|..|...|..++..|++|+++|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D 37 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWD 37 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEe
Confidence 369999999999999999999999999999
No 427
>KOG1399|consensus
Probab=93.63 E-value=0.14 Score=47.54 Aligned_cols=136 Identities=11% Similarity=-0.002 Sum_probs=75.0
Q ss_pred CCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCC--------ChHHHH----------H--HHHHhhc---
Q psy7665 10 EVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHP--------TCAEAI----------S--LSWIKGY--- 66 (296)
Q Consensus 10 ~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~p--------t~~e~l----------~--v~~~~~~--- 66 (296)
+++.|=|....-+..++......-.+..+.+|+-+.-.-+++| +..|.+ + ..+++++
T Consensus 37 r~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~ 116 (448)
T KOG1399|consen 37 RTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVV 116 (448)
T ss_pred ecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEE
Confidence 3556666666666666454444666677777776655444443 332221 1 1223333
Q ss_pred CCCCce--------------eeccceeeeeeeccccC-C-ccchhh----hccCcceeecc-ccCCCCccccEEEECCCh
Q psy7665 67 NIEPEV--------------IKLHTPYLVLAKARFLL-P-TLECQE----VYHDGRFYDYL-DNNFQTYDYDLCVIGGGS 125 (296)
Q Consensus 67 ~~~~~~--------------~~~~~p~~v~~~~~~~~-~-~~~~~~----~~~~~~~~~~~-~~~~~~~~~dVvVIGgG~ 125 (296)
.+++.. +.+.--|.|++++|+.. | .+.... ..+...+.... ..+....+..|+|||+|.
T Consensus 117 ~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~ 196 (448)
T KOG1399|consen 117 RVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGN 196 (448)
T ss_pred EEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCc
Confidence 111111 34555689999999872 2 222222 11111111111 112233567999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEe
Q psy7665 126 GGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 126 aG~~aA~~l~~~G~~V~iiE 145 (296)
+|+..|..+++....|.+..
T Consensus 197 SG~DIs~d~~~~ak~v~~~~ 216 (448)
T KOG1399|consen 197 SGMDISLDLLRVAKEVHLSV 216 (448)
T ss_pred cHHHHHHHHHHhccCcceee
Confidence 99999999988877666653
No 428
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.62 E-value=0.16 Score=38.94 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=29.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCc-EEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKK-VALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE 145 (296)
.+..++|||+|-+|-.++.+|...|.+ ++|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 345899999999999999999999987 99998
No 429
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.62 E-value=0.098 Score=47.93 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=29.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+..|+|+|+|+.|+.+|..++..|.+|+++|
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d 232 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTE 232 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 35689999999999999999999999999999
No 430
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.55 E-value=0.13 Score=45.45 Aligned_cols=30 Identities=20% Similarity=0.101 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+|+|||+|..|...|..|++.|++|+++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~ 35 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLL 35 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 379999999999999999999999999999
No 431
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.54 E-value=0.1 Score=47.35 Aligned_cols=31 Identities=39% Similarity=0.600 Sum_probs=29.1
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..+|+|||+|.+|..+|..|...|.+|+++|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d 197 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILD 197 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEE
Confidence 3479999999999999999999999999999
No 432
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.40 E-value=0.11 Score=45.68 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=27.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
+|.|||+|..|...|..++.+|. +|+++|
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvD 32 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLD 32 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEe
Confidence 69999999999999999999886 899999
No 433
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.39 E-value=0.11 Score=45.34 Aligned_cols=29 Identities=34% Similarity=0.338 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|..|...|..+++.|++|+++|
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d 34 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLND 34 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEe
Confidence 69999999999999999999999999999
No 434
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.36 E-value=0.12 Score=45.05 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|..|...|..+++.|++|+++|
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d 33 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVD 33 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEe
Confidence 69999999999999999999999999999
No 435
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.28 E-value=0.14 Score=39.55 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=27.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
+|+|||+|-.|++.|..|++.|. +++++|
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEc
Confidence 48999999999999999999997 699999
No 436
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.27 E-value=0.12 Score=45.18 Aligned_cols=29 Identities=28% Similarity=0.341 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|..|...|..+++.|++|+++|
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d 33 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVD 33 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEe
Confidence 69999999999999999999999999999
No 437
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.25 E-value=0.12 Score=45.54 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMN--KKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE 145 (296)
+|.|||+|.+|..+|+.|+++| .+++++|
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D 32 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVD 32 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence 6999999999999999999999 5899999
No 438
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.23 E-value=0.15 Score=40.98 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=27.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
+|+|||+|..|...|..|++.|. +++++|
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD 30 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVD 30 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEe
Confidence 48999999999999999999998 599999
No 439
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.18 E-value=0.014 Score=54.22 Aligned_cols=126 Identities=14% Similarity=0.123 Sum_probs=72.7
Q ss_pred EEEEEcCChhHHHHHHHHHHHcCCCHHHHc-cCcCCCCChHHHHHHHHHhhcC----CCCceeeccceeeeeeeccccCC
Q psy7665 16 TAEISSNNAGEITQGYALGVMLGAYKQDFD-ALIGIHPTCAEAISLSWIKGYN----IEPEVIKLHTPYLVLAKARFLLP 90 (296)
Q Consensus 16 G~~~~g~~a~e~i~~~~~~~~~~~~k~~l~-~~i~~~pt~~e~l~v~~~~~~~----~~~~~~~~~~p~~v~~~~~~~~~ 90 (296)
|+.+++.+....++++. ..+++-..+. +.+..--.+.+..++++++|+. ++.+.+...- |+|++++|...+
T Consensus 146 G~~Vtv~e~~~~~GGll---~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L~~e~-Dav~l~~G~~~~ 221 (457)
T COG0493 146 GHDVTVFERVALDGGLL---LYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLEELLKEY-DAVFLATGAGKP 221 (457)
T ss_pred CCeEEEeCCcCCCceeE---EecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHHHHHHhh-CEEEEeccccCC
Confidence 45555555555554432 2333333333 2222233455667788887774 4556665544 999999997555
Q ss_pred cc-chhhhc--cCcceeecc--------c-----cCCCCccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 91 TL-ECQEVY--HDGRFYDYL--------D-----NNFQTYDYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 91 ~~-~~~~~~--~~~~~~~~~--------~-----~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
.+ ..++.+ ......+.| . ......+.+|+|||||..++.++....+.|. +|+.++
T Consensus 222 ~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~ 293 (457)
T COG0493 222 RPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFY 293 (457)
T ss_pred CCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEec
Confidence 43 222221 121111111 1 1111133799999999999999999999997 677775
No 440
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.16 E-value=0.13 Score=45.91 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|..|...|..|++.|++|++++
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~ 32 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIG 32 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEe
Confidence 69999999999999999999999999999
No 441
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.11 E-value=0.15 Score=42.13 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=28.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
..+|+|||+|..|.++|..|++.|. +++++|
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD 52 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVD 52 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEec
Confidence 4589999999999999999999996 899999
No 442
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.04 E-value=0.18 Score=37.27 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=25.7
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 118 LCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 118 VvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
|+|+|.|..|...+..|.+.+.+|+++|
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid 28 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVID 28 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEE
Confidence 6899999999999999999777999999
No 443
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.97 E-value=0.17 Score=40.42 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=29.0
Q ss_pred ccccEEEECCCh-HHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGS-GGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~-aG~~aA~~l~~~G~~V~iiE 145 (296)
.+.+|+|||+|- +|..+|.+|.++|.+|+++.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~ 75 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCH 75 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEE
Confidence 456899999996 79999999999999999999
No 444
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.88 E-value=0.15 Score=45.63 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=28.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
...|+|||+|..|..+|..|++.|. +++|+|
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD 55 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIAD 55 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 3479999999999999999999997 899999
No 445
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.85 E-value=0.17 Score=42.31 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=28.9
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+..|+|||||.+++.=+..|.+.|.+|+|+-
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4579999999999999999999999999996
No 446
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.69 E-value=0.17 Score=45.25 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=29.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
..+|+|||+|-.|+.+|..|++.|. +++|+|
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD 55 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVD 55 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 3489999999999999999999998 899999
No 447
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.56 E-value=0.16 Score=46.88 Aligned_cols=30 Identities=37% Similarity=0.350 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+|.|||.|..|+.+|..|+++|++|+.+|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D 33 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVD 33 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEe
Confidence 379999999999999999999999999999
No 448
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=92.53 E-value=0.18 Score=42.84 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=27.5
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-----------CcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMN-----------KKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G-----------~~V~iiE 145 (296)
..+|+|||+|-.|+.++..|++.| .+++|+|
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD 52 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYD 52 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEEC
Confidence 358999999999999999999974 2899999
No 449
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.53 E-value=0.23 Score=38.37 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=26.9
Q ss_pred cEEEECC-ChHHHHHHHHHHhCCC--cEEEEe
Q psy7665 117 DLCVIGG-GSGGISAAKEAASMNK--KVALFD 145 (296)
Q Consensus 117 dVvVIGg-G~aG~~aA~~l~~~G~--~V~iiE 145 (296)
+|+|||+ |.+|...|+.|...+. ++.++|
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D 33 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLID 33 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEec
Confidence 6999999 9999999999999874 799999
No 450
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=92.33 E-value=2.9 Score=37.85 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=15.5
Q ss_pred HHHHHHhCCCcEEEEec
Q psy7665 130 AAKEAASMNKKVALFDF 146 (296)
Q Consensus 130 aA~~l~~~G~~V~iiE~ 146 (296)
+|++|+++|.+|+|+|+
T Consensus 1 ~A~~La~~G~~V~vlE~ 17 (381)
T TIGR03197 1 TAYSLARRGWQVTLYEQ 17 (381)
T ss_pred ChHHHHhCCCeeEEEeC
Confidence 58999999999999993
No 451
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.32 E-value=0.21 Score=40.98 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=28.5
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
...|+|||+|..|++.|..|++.|. +++++|
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD 52 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILD 52 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 4589999999999999999999996 599999
No 452
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.26 E-value=0.23 Score=40.86 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=28.5
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
..+|+|||+|..|++.|..|++.|. +++++|
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD 50 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVD 50 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 3589999999999999999999996 599999
No 453
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.24 E-value=0.18 Score=46.39 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||.|..|+..|..|++.|++|+++|
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d 30 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVD 30 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEE
Confidence 58999999999999999999999999999
No 454
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.15 E-value=0.19 Score=47.42 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..|+|+|.|.+|++++..|.++|.+|++.|
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D 42 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCD 42 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEc
Confidence 479999999999999999999999999999
No 455
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.11 E-value=0.22 Score=42.35 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=28.5
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
..+|+|||+|..|+++|..|++.|. +++|+|
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD 63 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVD 63 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 3489999999999999999999995 799998
No 456
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.08 E-value=0.24 Score=43.71 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|..|...|..|++.|++|+++|
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d 34 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLID 34 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 69999999999999999999999999999
No 457
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.02 E-value=0.26 Score=40.95 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=28.5
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCc-EEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKK-VALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE 145 (296)
...|+|||+|-.|+..|..|++.|.. ++++|
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD 59 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVD 59 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEe
Confidence 34899999999999999999999974 99999
No 458
>PRK08328 hypothetical protein; Provisional
Probab=92.00 E-value=0.24 Score=41.80 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=28.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
..+|+|||+|-.|+.+|..|++.|. +++|+|
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD 58 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLID 58 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 3489999999999999999999996 689998
No 459
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.99 E-value=0.25 Score=40.65 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=29.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+..++|+|.|-.|..+|..|.+.|.+|+++|
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence 4579999999999999999999999999999
No 460
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.90 E-value=0.26 Score=43.60 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=28.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK--KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE 145 (296)
..+|.|||+|.+|..+|+.|+..|. ++.|+|
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D 38 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIID 38 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 4589999999999999999999987 799999
No 461
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=91.87 E-value=0.22 Score=45.91 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCC------cEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNK------KVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~------~V~iiE 145 (296)
+|+|||+|..||+++..|+..|. +++|+|
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD 35 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTD 35 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEEC
Confidence 48999999999999999999998 799999
No 462
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.86 E-value=0.23 Score=44.10 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|..|...|..|++.|++|.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~ 30 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWG 30 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence 58999999999999999999999999999
No 463
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.81 E-value=0.25 Score=41.50 Aligned_cols=31 Identities=32% Similarity=0.424 Sum_probs=28.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
..+|+|||+|..|++.|..|++.|. +++|+|
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD 52 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVD 52 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 3489999999999999999999996 789998
No 464
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.79 E-value=0.23 Score=46.48 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=27.1
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMN--KKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE 145 (296)
+|+|||.|.+|+.+|..|++.| ++|+.+|
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 6999999999999999999985 7899999
No 465
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.78 E-value=0.24 Score=43.56 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
+|.|||+|..|...|..++..|. +|+++|
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D 33 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFD 33 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEE
Confidence 79999999999999999999876 999999
No 466
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.76 E-value=0.24 Score=45.27 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=30.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+..|+|+|.|+.|..+|..++..|.+|+++|
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d 225 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTE 225 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEe
Confidence 35689999999999999999999999999998
No 467
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.65 E-value=0.25 Score=46.53 Aligned_cols=31 Identities=35% Similarity=0.515 Sum_probs=29.1
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..+|+|+|+|++|+.++..+...|.+|+++|
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d 194 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFD 194 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3589999999999999999999999999999
No 468
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.61 E-value=0.28 Score=41.59 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=28.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
..+|+|||+|..|..+|..|++.|. +++++|
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD 55 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLD 55 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEe
Confidence 3589999999999999999999995 789998
No 469
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.59 E-value=0.22 Score=46.23 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..++|+|+|.+|+++|..|++.|.+|++.|
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d 35 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVND 35 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEc
Confidence 369999999999999999999999999999
No 470
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.51 E-value=0.32 Score=42.88 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+|.|||+|..|...|..|++.|++|.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~ 34 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWS 34 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999999999999999
No 471
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.48 E-value=0.28 Score=43.53 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=28.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
.+|+|||+|..|...|+.++..|. +++++|
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvD 37 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFD 37 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 389999999999999999999995 899999
No 472
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.44 E-value=0.27 Score=45.76 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..++|+|.|.+|+++|..|+++|.+|+++|
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d 35 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYD 35 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 379999999999999999999999999999
No 473
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.43 E-value=0.28 Score=42.94 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|..|...|..++..|++|+++|
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d 34 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLD 34 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEe
Confidence 69999999999999999999999999999
No 474
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.41 E-value=0.28 Score=43.24 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=27.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMN--KKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE 145 (296)
+|+|||+|.+|..+|+.|+..| .+++++|
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 6999999999999999999999 5799999
No 475
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.37 E-value=0.29 Score=43.14 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=26.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNK--KVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE 145 (296)
+|.|||+|.+|.++|+.|...+. +++|+|
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~D 31 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLID 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 58999999999999999998885 699999
No 476
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=0.34 Score=43.19 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=36.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~ 162 (296)
..|||+|+|.|..=|..+..|+..|.+|+.+| +++ .-|++.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD--~Nd------~YG~~~ 45 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHID--KND------YYGSTS 45 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEe--CCC------ccCccc
Confidence 46899999999999999999999999999999 777 666653
No 477
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.29 E-value=0.31 Score=41.06 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=28.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
...|+|||.|-.|.++|..|++.|. +++|+|
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD 42 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLID 42 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 3489999999999999999999996 799999
No 478
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=91.28 E-value=0.33 Score=41.02 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=26.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
+|+|||+|..|++.+..|++.|. +++|+|
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD 30 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVID 30 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 48999999999999999999995 689999
No 479
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.26 E-value=0.31 Score=44.17 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEec
Q psy7665 117 DLCVIGGGSGGISAAKEAASMN-KKVALFDF 146 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~ 146 (296)
+|+|||+|-+|..+|..|++.| .+|++.++
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdR 33 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADR 33 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeC
Confidence 7999999999999999999999 89999993
No 480
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.21 E-value=0.36 Score=40.56 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=28.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC---cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK---KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~---~V~iiE 145 (296)
+..++|+|+|-+|..+|..|.+.|. ++.+++
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivd 58 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVD 58 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEe
Confidence 3489999999999999999999997 499999
No 481
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=91.16 E-value=0.31 Score=42.50 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=26.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
+|+|||+|..|++.+..|+..|. +++|+|
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD 30 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVID 30 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 48999999999999999999996 689998
No 482
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.08 E-value=0.3 Score=44.93 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=29.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+..|+|+|.|+.|..+|..|+..|.+|+++|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d 242 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTE 242 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45589999999999999999999999999999
No 483
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.03 E-value=0.33 Score=41.35 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..++|+|+|+.+...|..+...|++|+++|
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D 130 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVD 130 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEe
Confidence 489999999999999999999999999999
No 484
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=90.90 E-value=0.31 Score=42.97 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=27.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
+|+|||+|..|++.|..|+..|. +++|+|
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD 30 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIID 30 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEc
Confidence 48999999999999999999995 799999
No 485
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.84 E-value=0.34 Score=42.83 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|..|...|..|++.|++|++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~ 31 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWA 31 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEE
Confidence 69999999999999999999999999999
No 486
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.73 E-value=0.38 Score=42.78 Aligned_cols=29 Identities=34% Similarity=0.422 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||+|.-|...|..|++.|++|++++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~ 34 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWA 34 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence 69999999999999999999999999999
No 487
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.67 E-value=0.42 Score=41.94 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=29.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+.+|+|||.|.+|..++..|.+.|.+|++++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~ 182 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGA 182 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999999999999999999999
No 488
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.54 E-value=0.32 Score=45.64 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..|+|+|.|-+|.++|..|.++|.+|++.|
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d 38 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTL 38 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEc
Confidence 479999999999999999999999999999
No 489
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.47 E-value=0.43 Score=41.58 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=28.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
..+|+|||+|-+|.++++.|++.|. +++|++
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~n 158 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFD 158 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 3589999999999999999999996 799999
No 490
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.44 E-value=0.42 Score=42.41 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=27.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMN-KKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE 145 (296)
.+|+|||+|..|...|..++..| .+++++|
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~D 36 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYD 36 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEE
Confidence 48999999999999999999988 6899999
No 491
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=90.43 E-value=0.44 Score=37.63 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=25.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+..++|+|=|..|-.+|.+|+..|.+|+|.|
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e 53 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTE 53 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEE
Confidence 4579999999999999999999999999999
No 492
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.34 E-value=0.45 Score=42.08 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=27.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNK--KVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE 145 (296)
.+|.|||+|.+|.++|+.|...|. +++|+|
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD 35 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVD 35 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 389999999999999999998875 699999
No 493
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.26 E-value=0.35 Score=42.51 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=26.1
Q ss_pred EEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 118 LCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 118 VvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
|.|||+|..|...|..++..|. +|+++|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~D 29 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLD 29 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEe
Confidence 5799999999999999998876 999999
No 494
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.23 E-value=0.46 Score=41.48 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=29.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
.+..++|||.|..|...|..|+..|.+|++++
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~ 181 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGA 181 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEe
Confidence 34589999999999999999999999999999
No 495
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.19 E-value=0.4 Score=43.78 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=25.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+|.|||.|..|+..|..++. |++|+++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD 29 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALD 29 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEE
Confidence 58999999999999988775 99999999
No 496
>PRK08223 hypothetical protein; Validated
Probab=90.16 E-value=0.45 Score=41.34 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=28.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
...|+|||+|-.|+.+|.+|++.|. +++|+|
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD 58 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIAD 58 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEe
Confidence 3489999999999999999999996 789998
No 497
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.14 E-value=0.33 Score=44.88 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=29.7
Q ss_pred cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
+.+|+|+|-|-+|+++|..|.++|.+|++.|
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D 37 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSD 37 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEc
Confidence 4589999999999999999999999999999
No 498
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=90.04 E-value=0.44 Score=41.60 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=27.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665 117 DLCVIGGGSGGISAAKEAASMNK-KVALFD 145 (296)
Q Consensus 117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE 145 (296)
+|+|||+|-.|+..|..|++.|. +++++|
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD 30 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVD 30 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 48999999999999999999996 689998
No 499
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.03 E-value=0.38 Score=47.57 Aligned_cols=30 Identities=30% Similarity=0.286 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..|.|||+|..|...|..++..|++|+++|
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d 343 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKD 343 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEe
Confidence 479999999999999999999999999999
No 500
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.98 E-value=0.44 Score=44.77 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145 (296)
Q Consensus 116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE 145 (296)
..|+|+|.|-+|+++|..|.+.|.+|++.|
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D 45 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVAD 45 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEEC
Confidence 469999999999999999999999999999
Done!