RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7665
(296 letters)
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 202 bits (516), Expect = 7e-62
Identities = 91/164 (55%), Positives = 116/164 (70%), Gaps = 5/164 (3%)
Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLF 173
YDYDL VIGGGSGG++AAKEAA+ KV L DFVTP+ GT WG+GGTCVNVGCIPKKL
Sbjct: 1 YDYDLIVIGGGSGGLAAAKEAAAYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLM 60
Query: 174 HRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
H+A+LL + S N+G+ ++++ WK LV+ VQ +I +LN Y L + K+ Y NA
Sbjct: 61 HQAALLGQALKDSRNYGWKVEETVKHDWKRLVEAVQNHIGSLNWGYRVALREKKVKYENA 120
Query: 232 KAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAR 272
A FVDKHR+K G+E+ SA+ F+IA G RP YP IPGA+
Sbjct: 121 YAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAK 164
Score = 54.1 bits (130), Expect = 3e-08
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
NAGE+TQG+A + G K+D D IGIHP CAE
Sbjct: 429 NAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAE 462
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 184 bits (469), Expect = 8e-55
Identities = 85/173 (49%), Positives = 113/173 (65%), Gaps = 10/173 (5%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
T+ YDL VIGGGSGG++AAKEAA+ KKVALFD+V PS GT WGLGGTCVNVGC+PKKL
Sbjct: 3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKL 62
Query: 173 FHRA----SLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDY 228
H A S+ + ++ +G+ SF W LV VQ +IR+LN +Y L +K++Y
Sbjct: 63 MHYAANIGSIFHHDSQ---MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEY 119
Query: 229 FNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYP-DIPGARLLRTLS 278
N A D+H V + +E T++A+ +IA GGRP+ P D+PGA+ S
Sbjct: 120 INGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAKEYSITS 172
Score = 59.1 bits (143), Expect = 7e-10
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAIS 59
NAGEITQG++L + LGA K DFD++IGIHPT AE
Sbjct: 439 NAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFM 475
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 179 bits (458), Expect = 2e-53
Identities = 72/164 (43%), Positives = 92/164 (56%), Gaps = 19/164 (11%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
T DYDL VIGGGSGGI++A AA KVAL + ++ LGGTCVNVGC+PKKL
Sbjct: 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIE----AKR-----LGGTCVNVGCVPKKL 52
Query: 173 F----HRASLLNEEATTSDNFGFHM-KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID 227
A ++ A +GF + + F W L+ N YI L+ +Y LE N +D
Sbjct: 53 MWYGAQIAEAFHDYAP---GYGFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVD 109
Query: 228 YFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
A FVD H V+ GE +A + +IA GGRP+ PDIPGA
Sbjct: 110 LIEGFARFVDAHTVEVNGE--RYTADHILIATGGRPSIPDIPGA 151
Score = 52.5 bits (127), Expect = 9e-08
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
A E+ QG+A+ + +GA K DFD + IHPT AE
Sbjct: 411 GADEMIQGFAVAIKMGATKADFDNTVAIHPTAAE 444
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 144 bits (366), Expect = 4e-40
Identities = 61/162 (37%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
+YD+ VIG G G AA AA + KVAL + LGGTC+NVGCIP K
Sbjct: 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVE----KGE----RLGGTCLNVGCIPSK 52
Query: 172 -LFHRASLLNEEATTSDNFGFHMK-KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
L H A ++ E + +G + ++ L+ K +R L E L+KN +D
Sbjct: 53 ALLHAAEVIEEARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVI 112
Query: 230 NAKAVFVDKHRVKFAGEE-RTVSAQNFIIAVGGRPTYPDIPG 270
+A FVD H V+ GE+ T++A N IIA G RP P PG
Sbjct: 113 RGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPG 154
Score = 34.1 bits (79), Expect = 0.087
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 17 AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
A I A E+ AL + +GA +D I HPT +EA+
Sbjct: 409 AHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEAL 450
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria [Energy metabolism,
Electron transport].
Length = 446
Score = 130 bits (328), Expect = 8e-35
Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 14/163 (8%)
Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVAL--FDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
+DYDL VIG GSGG+ AA+ AA++ KVA+ V GGTCV GC+PKK
Sbjct: 1 FDYDLFVIGAGSGGVRAARLAAALGAKVAIAEEFRV-----------GGTCVIRGCVPKK 49
Query: 172 LFHRASLLNEEATTSDNFGFHMKKS-FTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
L AS E + +G+ + K+ F WK L+ + I L+ Y K L + +
Sbjct: 50 LMVYASQFAEHFEDAAGYGWTVGKARFDWKKLLAAKDQEIARLSGLYRKGLANAGAELLD 109
Query: 231 AKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL 273
+A V + V+ +T +A+ +IAVGGRP P +PG L
Sbjct: 110 GRAELVGPNTVEVLASGKTYTAEKILIAVGGRPPKPALPGHEL 152
Score = 48.7 bits (116), Expect = 2e-06
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 15 ITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
+ A + +A EI QG A+ + +GA K DFD+ + +HPT AE
Sbjct: 399 LGAHMVGPDAAEIIQGLAIALKMGATKDDFDSTVAVHPTSAE 440
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 126 bits (318), Expect = 3e-33
Identities = 65/161 (40%), Positives = 91/161 (56%), Gaps = 14/161 (8%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
YD VIGGGSGGI++A+ AA K L + LGGTCVNVGC+PKK+
Sbjct: 3 YDYLVIGGGSGGIASARRAAEHGAKALLVE---------AKKLGGTCVNVGCVPKKVMWY 53
Query: 176 ASLLNEEATTSDNFGFH--MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
AS L E + ++GF+ ++ +F W L + Y+ LN Y+K LEKNK+D A
Sbjct: 54 ASDLAERMHDAADYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHA 113
Query: 234 VFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGARL 273
F V+ G + +A + +IA GG+P++P+ IPGA L
Sbjct: 114 RFTKDGTVEVNGRD--YTAPHILIATGGKPSFPENIPGAEL 152
Score = 43.7 bits (103), Expect = 7e-05
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 26 EITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
E+ QG+A+ + +GA K DFD + IHPT +E
Sbjct: 414 EMLQGFAVAIKMGATKADFDNTVAIHPTSSE 444
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 117 bits (297), Expect = 3e-30
Identities = 60/160 (37%), Positives = 80/160 (50%), Gaps = 17/160 (10%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
YD+ VIG G G AA+ AA + KKVAL + G LGGTC+NVGCIP K
Sbjct: 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIE------KGP---LGGTCLNVGCIPSKALI 53
Query: 175 RASLLNEEATTSDNFGFH-MKKSFTWKTLVDNVQKYIRNLNNNY--EKELEKNKIDYFNA 231
A+ EA ++ FG H +K ++ V++ R+ E +K KID
Sbjct: 54 AAAEAFHEAKHAEEFGIHADGPKIDFKKVMARVRR-ERDRFVGGVVEGLEKKPKIDKIKG 112
Query: 232 KAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
A FVD + V+ ER + A+N +IA G R P IPG
Sbjct: 113 TARFVDPNTVE-VNGER-IEAKNIVIATGSR--VPPIPGV 148
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 116 bits (292), Expect = 2e-29
Identities = 62/183 (33%), Positives = 94/183 (51%), Gaps = 36/183 (19%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
YDL VIGGGSGG++AA+ AA KVAL + LGGTCVNVGC+PKK+
Sbjct: 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY---------LGGTCVNVGCVPKKIMF 98
Query: 175 RASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
A+ +++ S ++GF + SF LV+ KYIR LN+ Y + L+K+ ++YF K
Sbjct: 99 NAASIHDILENSRHYGFDTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGS 158
Query: 235 FVDKHRVKFAG---------------------------EERTVSAQNFIIAVGGRPTYPD 267
+ +++V + + + +N +IAVG +P +PD
Sbjct: 159 LLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKPIFPD 218
Query: 268 IPG 270
+ G
Sbjct: 219 VKG 221
Score = 45.8 bits (108), Expect = 2e-05
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
NA EI QG+A+ + + A K DFD I IHPT AE
Sbjct: 518 NADEILQGFAVALKMNATKADFDETIPIHPTAAEEF 553
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 111 bits (279), Expect = 9e-28
Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 10/156 (6%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
YDL +IG G+ +AA +AA + VA+ + G LGGTCVNVGC+P K+ R
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGASVAMV------ERGP---LGGTCVNVGCVPSKMLLR 51
Query: 176 ASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNL-NNNYEKELEKNKIDYFNAKAV 234
A+ + A G + + L++ ++ + L + YE L +DY +A
Sbjct: 52 AAEVAHYARKPPFGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRAR 111
Query: 235 FVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
F D VK A+ F+IA G RP P IPG
Sbjct: 112 FKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPG 147
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 110 bits (277), Expect = 2e-27
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF-VTPSQHGTVWGLGGTCVNVGCIPKKL 172
YD+DL VIG GSGG+ AA+ +A+ KV + + P ++ G+GGTCV GC+PKK+
Sbjct: 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKI 83
Query: 173 FHRASLLNEEATTSDNFGFHM--KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
+ E + N+G+ + K F WK L+ I LN Y++ L + +
Sbjct: 84 LVYGATFGGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYE 143
Query: 231 AKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPDIPGARL 273
+ V + V + G + +A++ +IA G R P+IPG L
Sbjct: 144 GEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKEL 189
Score = 44.4 bits (105), Expect = 5e-05
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
+A EI QG A+ + GA K FD+ +GIHP+ AE
Sbjct: 444 DAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAE 477
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 107 bits (270), Expect = 2e-26
Identities = 60/158 (37%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LFH 174
YD+ VIGGG GG AA AA + KVAL V LGGTC+NVGCIP K L H
Sbjct: 2 YDVIVIGGGPGGYVAAIRAAQLGLKVAL---VEKEY------LGGTCLNVGCIPTKALLH 52
Query: 175 RASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
A + +E + + G ++ S W+ + K ++ L L+KNK+ +A
Sbjct: 53 SAEVY-DEIKHAKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEA 111
Query: 234 VFVDKHRVKFAGE--ERTVSAQNFIIAVGGRPTYPDIP 269
F+D V GE E T+ A+N IIA G RP P
Sbjct: 112 KFLDPGTVSVTGENGEETLEAKNIIIATGSRPRSLPGP 149
Score = 28.8 bits (65), Expect = 4.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 17 AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
A I +A E+ AL + L ++ I HPT +EAI
Sbjct: 406 AHIIGPHATELISEAALAMELEGTVEELARTIHPHPTLSEAI 447
>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 107 bits (268), Expect = 4e-26
Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 7/161 (4%)
Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD--FVTPSQHGTVWGLGGTCVNVGCIPKK 171
YD+DL IG GSGG+ A++ A++ A+ + F T S T+ G+GGTCV GC+PKK
Sbjct: 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSD-TLGGVGGTCVLRGCVPKK 136
Query: 172 LFHRASLLNEEATTSDNFG--FHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
L AS + E S FG + + W TL+ N ++ L Y+ L+ +
Sbjct: 137 LLVYASKYSHEFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLI 196
Query: 230 NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
+ VD H V G + +A+N +IAVGGRP PDIPG
Sbjct: 197 EGRGKIVDPHTVDVDG--KLYTARNILIAVGGRPFIPDIPG 235
Score = 49.5 bits (118), Expect = 1e-06
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
+A EI QG+A+ V G K DFDA +GIHPT AE
Sbjct: 493 DAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAE 526
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 105 bits (266), Expect = 6e-26
Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
+YD+ VIG G GG AA AA + KVA+ + + LGGTC+N GCIP K
Sbjct: 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVE----KEK-----LGGTCLNRGCIPSKALL 54
Query: 175 RASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
A+ +EA S++FG + +K + + + L E L+KNK+D +A
Sbjct: 55 HAAERADEARHSEDFGIKAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEA 114
Query: 234 VFVDKH--RVKFAGEERTVSAQNFIIAVGGRP-TYPDI-PGARLLRT 276
VD + RV E+T +A+N I+A G RP P I R++ T
Sbjct: 115 KLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161
Score = 33.2 bits (77), Expect = 0.16
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
A E+ Q L + A +D I HPT +EA+
Sbjct: 413 RASELIQEAQLAINWEATPEDLALTIHPHPTLSEAL 448
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 98.2 bits (245), Expect = 5e-24
Identities = 44/164 (26%), Positives = 61/164 (37%), Gaps = 36/164 (21%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRA 176
D+ +IGGG G++AA A + KVAL + GGTC N GC+PKKL
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIE-----------REGGTCYNRGCLPKKLLLEV 49
Query: 177 SLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV 236
+ E A ++ + E L +D + V
Sbjct: 50 AEGLELAIGL-----------------ALPEEVYK--EFGVEVLLGTEVVDIDRGEKTVV 90
Query: 237 DKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL--LRTLS 278
K R ++ IIA G RP P IPG + LR +
Sbjct: 91 LKDVET----GREITYDKLIIATGARPRIPGIPGVEVATLRGVI 130
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 96.4 bits (241), Expect = 2e-22
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
YD VIG G G A AA + KVAL + + LGGTCVN GC+P K
Sbjct: 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIE-----RGL----LGGTCVNTGCVPTKTLIA 56
Query: 176 ASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRNLNNNYEKELEK-NKIDYFNAK 232
++ A + +G + + +K ++ ++ + E+ L +D F
Sbjct: 57 SARAAHLARRAAEYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGH 116
Query: 233 AVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
A F + V+ GE T+ A+ I G R P IPG
Sbjct: 117 ARFESPNTVRVGGE--TLRAKRIFINTGARAAIPPIPG 152
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 95.6 bits (239), Expect = 3e-22
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 15/177 (8%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
YDYDL VIG G G AA +AA + K+VA+ + ++ +GG C + G IP K
Sbjct: 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE-----RY---RNVGGGCTHTGTIPSK 53
Query: 172 -LFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
L L + +K T+ L+ I + E+N++D
Sbjct: 54 ALREAVLRLIGFNQNPLYSSYRVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQ 113
Query: 231 AKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYP-DIP--GARLLRTLSLLS 281
+A FVD H V GE T++A +IA G RP P D+ R+ + S+LS
Sbjct: 114 GRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDSDSILS 170
>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal
drug target closely related to some forms of glutathione
reductase.
Length = 486
Score = 88.9 bits (220), Expect = 8e-20
Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKK-VALFDFVTPSQHGTVW--GLGGTCVNVGCIPKKL 172
+DL VIG GSGG+ A AA++ KK VA+ D T HG + LGGTCVNVGC+PKKL
Sbjct: 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVVDVQT--HHGPPFYAALGGTCVNVGCVPKKL 61
Query: 173 FHRASLLNEEATTSDNFGFHMKKSF---TWKTLVDNVQKYIRNLNNNYEKELEKNK-IDY 228
+ + S FG+ +S WK L+ K + ++N +YE + + +
Sbjct: 62 MVTGAQYMDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTF 121
Query: 229 FNAKAVFVDKHRV--------KFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
F DK+ V K A +ER + A++ ++A G P IPG
Sbjct: 122 FLGWGALEDKNVVLVRESADPKSAVKER-LQAEHILLATGSWPQMLGIPG 170
Score = 33.8 bits (77), Expect = 0.093
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 22 NNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI------SLSWIKGYNIE 69
+++ EI Q + + L A DF IG+HPT AE + S + KG +E
Sbjct: 431 DSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYQKGEKME 484
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 87.3 bits (217), Expect = 2e-19
Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK--- 171
+D+ VIG G GG AA AA + KVA + + LGGTC+NVGCIP K
Sbjct: 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKP--ALGGTCLNVGCIPSKALL 61
Query: 172 ----LFHRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKI 226
F A + G H+ ++ K ++ + E +KNKI
Sbjct: 62 ASSEEFENAGHHFAD------HGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKI 115
Query: 227 DYFNAKAVFV----DKHRVKFAGE-ERTVSAQNFIIAVGGRPTYPDIPGA 271
+ FV + +K GE E ++A++ IIA G P +PG
Sbjct: 116 TVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR--HLPGV 163
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 85.4 bits (212), Expect = 9e-19
Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 15/160 (9%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
YDL +IG GSG + A K++A+ + GT GGTC+NVGCIP K+F
Sbjct: 1 HYDLIIIGTGSGNSILDERFAD--KRIAIVE------KGT---FGGTCLNVGCIPTKMFV 49
Query: 175 RASLLNEEATTSDNFGFHMK-KSFTWKTLVDNVQKYIRNLNNNYE--KELEKNKIDYFNA 231
A+ + + G + W +V V I + E + + ID +
Sbjct: 50 YAADVARTIREAARLGVDAELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRG 109
Query: 232 KAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
A F+ ++ E ++A +IA G RP P +
Sbjct: 110 HARFIGPKTLRTGDGE-EITADQVVIAAGSRPVIPPVIAD 148
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 81.2 bits (201), Expect = 3e-17
Identities = 40/165 (24%), Positives = 60/165 (36%), Gaps = 28/165 (16%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD-FVTPSQHGTVWGLGGTCVNVGCIPKK--- 171
+ V+G G G SAA AA + + + + T LGG C+NVGCIP K
Sbjct: 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYST---------LGGVCLNVGCIPSKALL 55
Query: 172 ----LFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID 227
+ A L E + K K +K ++ L + K+
Sbjct: 56 HVAKVIEEAKALAEHGIVFGEPKIDIDKMRARK------EKVVKQLTGGLAGMAKGRKVT 109
Query: 228 YFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP 269
N F + ++ G+ + N IIA G RP +P
Sbjct: 110 VVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI--QLP 152
Score = 28.8 bits (65), Expect = 3.9
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 6 LGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISL 60
LGG+ V T NAGE+ L + +G +D I HPT E++ L
Sbjct: 408 LGGAIVGT---------NAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGL 453
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 80.9 bits (200), Expect = 4e-17
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 118 LCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRAS 177
L VIGGG G AA AA K V L D LGGTC+N GC+P K ++
Sbjct: 3 LVVIGGGPAGYVAAITAAQNGKNVTLIDEAD---------LGGTCLNEGCMPTKSLLESA 53
Query: 178 LLNEEATTSDNFGFHMKK---SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
++++ +++FG + S WK + + + L + ++KNKI KA
Sbjct: 54 EVHDKVKKANHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKAS 113
Query: 235 FVDKHR--VKFAGEERTVSAQNFIIAVGGRPT 264
F HR V++ +E V A+ FIIA G PT
Sbjct: 114 FETDHRVRVEYGDKEEVVDAEQFIIAAGSEPT 145
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 76.4 bits (188), Expect = 1e-15
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
YD+ +IGGG GG +AA A + KVA + T LGGTC+NVGC+P K
Sbjct: 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVE-----GRST---LGGTCLNVGCMPSKALLH 55
Query: 176 ASLLNEEATTSD--NFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
AS L E A+ + + G +K + ++ + + L E KNK+D+
Sbjct: 56 ASELYEAASGGEFAHLGIEVKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG 115
Query: 234 VFVDKHRVKFAGE---ERTVSAQNFIIAVGGRPTYPDIPG 270
+V E E + A++ +IA G PT +PG
Sbjct: 116 RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLPG 153
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 74.9 bits (185), Expect = 3e-15
Identities = 49/176 (27%), Positives = 69/176 (39%), Gaps = 33/176 (18%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
+YDL +IGGG GG AA A + K AL V + LGGTC++ GCIP K
Sbjct: 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTAL---VEKGK------LGGTCLHKGCIPSK 51
Query: 172 LFHRASLLNEEATTSDNFG-------FHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKN 224
++ + + A + FG K K + L L+K
Sbjct: 52 ALLHSAEVFQTAKKASPFGISVSGPALDFAKVQERK------DGIVDRLTKGVAALLKKG 105
Query: 225 KIDYFNAKAVFVDKH---------RVKFA-GEERTVSAQNFIIAVGGRP-TYPDIP 269
KID F+ + V+ GE + +N +IA G RP P +P
Sbjct: 106 KIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP 161
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer
called mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows
some sequence similarity to glutathione-disulfide
reductase, trypanothione-disulfide reductase, and
dihydrolipoamide dehydrogenase. The characterized
protein from M. tuberculosis, a homodimer, has FAD as a
cofactor, one per monomer, and uses NADPH as a
substrate.
Length = 452
Score = 73.6 bits (181), Expect = 1e-14
Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 17/158 (10%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
YDL +IG GSG A K++A+ + GT GGTC+NVGCIP K+F
Sbjct: 2 HYDLIIIGTGSGNSIPDPRFAD--KRIAIV------EKGT---FGGTCLNVGCIPTKMFV 50
Query: 175 RASLLNEEATTSDNFGFHMK-KSFTWKTLVDNVQKY----IRNLNNNYEKELEKNKIDYF 229
A+ + + S G + S W +V V I +Y + E ID +
Sbjct: 51 YAAEVAQSIGESARLGIDAEIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVY 110
Query: 230 NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD 267
+ A FV ++ G+ ++ +IA G RP P
Sbjct: 111 DGHARFVGPRTLR-TGDGEEITGDQIVIAAGSRPYIPP 147
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 73.8 bits (181), Expect = 1e-14
Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 22/161 (13%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLL 179
+IG GS +AA +AA +V + + V +GG CVNVGC+P K+ RA+ L
Sbjct: 21 IIGSGSAAFAAAIKAAEHGARVTII------EGADV--IGGCCVNVGCVPSKILIRAAQL 72
Query: 180 NEEATTSDNFGFHMKKSFTWKTLVDNVQ----------KYIRNLNNNYEKELEKNKIDYF 229
+ ++ G + L+ + Q KY L+ N L K +
Sbjct: 73 AHQQRSNPFDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFK 132
Query: 230 NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
+ + V H G ER ++A +IA G PT P IPG
Sbjct: 133 DGNTLVVRLHD----GGERVLAADRCLIATGSTPTIPPIPG 169
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 72.4 bits (178), Expect = 3e-14
Identities = 54/171 (31%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
YD+ V+G G GG AA AA + K A V ++ WG G C+NVGCIP K R
Sbjct: 5 YDVVVLGAGPGGYVAAIRAAQLGLKTA----VVEKKY---WG--GVCLNVGCIPSKALLR 55
Query: 176 ----ASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
A + +EA T FG + +F + D +K ++KNKI +
Sbjct: 56 NAELAHIFTKEAKT---FGISGEVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG 112
Query: 232 KAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSL 279
F D + ++ G TV+ N IIA G RLL SL
Sbjct: 113 YGTFTDANTLEVDLNDGGTETVTFDNAIIATGSST--------RLLPGTSL 155
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 71.1 bits (174), Expect = 7e-14
Identities = 52/171 (30%), Positives = 74/171 (43%), Gaps = 23/171 (13%)
Query: 108 DNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGC 167
DNN + VIG G ++AA +A +V L + GT+ GGTCVN+GC
Sbjct: 4 DNNLH-----IAVIGSGGSAMAAALKATERGARVTLI------ERGTI---GGTCVNIGC 49
Query: 168 IPKKLFHRA---SLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNL-NNNYEKELEK 223
+P K+ RA + L E+ D L+ Q + L + Y+ L +
Sbjct: 50 VPSKIMIRAAHIAHLRRESPFDDGLSAQAPV-VDRSALLAQQQARVEELRESKYQSILRE 108
Query: 224 NK-IDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG 270
N I N +A FVD+ + G E+TV I G RP P +PG
Sbjct: 109 NAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPG 159
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 67.1 bits (164), Expect = 1e-12
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 27/158 (17%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP-KKLFH 174
YDL VIG G G + A + AS KKVAL + + ++G GTC+N+GCIP K L
Sbjct: 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVE-----ESKAMYG--GTCINIGCIPTKTLLV 56
Query: 175 RASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
A K+ +++ ++ L L + +D ++A+A
Sbjct: 57 AAE-----------------KNLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAH 99
Query: 235 FVDKHRVKF-AGEERT-VSAQNFIIAVGGRPTYPDIPG 270
FV ++ AG+E+ ++A+ +I G IPG
Sbjct: 100 FVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPG 137
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 64.0 bits (156), Expect = 2e-11
Identities = 49/159 (30%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASL- 178
VIG G ++AA +A +V L + GT+ GGTCVNVGC+P K+ RA+
Sbjct: 103 VIGSGGAAMAAALKAVEQGARVTLI------ERGTI---GGTCVNVGCVPSKIMIRAAHI 153
Query: 179 --LNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNN-NYEKELEKN-KIDYFNAKAV 234
L E+ + L+ Q + L + YE L+ N I + +A
Sbjct: 154 AHLRRESPFDGGIAAT-VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEAR 212
Query: 235 FVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
F D + G ER V+ +IA G P P IPG
Sbjct: 213 FKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPG 251
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 60.7 bits (147), Expect = 2e-10
Identities = 51/187 (27%), Positives = 67/187 (35%), Gaps = 36/187 (19%)
Query: 110 NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169
NF +YD+ +IG G GG +AA A KV +F S +GGTCVNVGCIP
Sbjct: 111 NFSDEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDS-------IGGTCVNVGCIP 163
Query: 170 KKLFHRAS----------LLNEEATTSDNFGFHMKKSFTWKTLVDN------------VQ 207
K A+ L ++ F LV + Q
Sbjct: 164 SKALLYATGKYRELKNLAKLYTYGIYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQ 223
Query: 208 KYIRNLNNNYEKELEKNKIDYFNAKAV-------FVDKHRVKFAGEERTVSAQNFIIAVG 260
I L E L+ K + VDK+ +K + +N IIA G
Sbjct: 224 SVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATG 283
Query: 261 GRPTYPD 267
P PD
Sbjct: 284 STPNIPD 290
>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 441
Score = 59.6 bits (144), Expect = 4e-10
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 24/157 (15%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
Y +IG G G + A A +VAL + Q ++G GTC+N+GCIP K
Sbjct: 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIE-----QSNAMYG--GTCINIGCIPTK---- 52
Query: 176 ASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF 235
L +A +F +++ + V ++R N N+ + ID + +A F
Sbjct: 53 --TLVHDAQQHTDFVRAIQRK-------NEVVNFLR--NKNFHNLADMPNIDVIDGQAEF 101
Query: 236 VDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
++ H RV + + I G + P IPG
Sbjct: 102 INNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPG 138
>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide
oxidoreductase, dimerisation domain. This family
includes both class I and class II oxidoreductases and
also NADH oxidases and peroxidases.
Length = 110
Score = 45.6 bits (109), Expect = 2e-06
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 17 AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
A I NAGE+ Q AL + +GA +D I HPT +EA+
Sbjct: 65 AHIVGPNAGELIQEAALAIKMGATVEDLANTIHAHPTLSEAL 106
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family
of proteins contains FAD dependent oxidoreductases and
related proteins.
Length = 415
Score = 47.2 bits (113), Expect = 5e-06
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGT 161
D+ V+GGG G++AA AA + KV L V LGG
Sbjct: 1 DVVVVGGGPAGVAAAIAAARLGAKVLL---VERRGW-----LGGM 37
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 45.4 bits (108), Expect = 2e-05
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGT 161
+++D+ VIGGG G+ AA EAA KVAL P + TV GG
Sbjct: 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGI 52
>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 42.9 bits (102), Expect = 1e-04
Identities = 40/164 (24%), Positives = 61/164 (37%), Gaps = 22/164 (13%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLL 179
+IGGG GG AA AA + V + + GLGG V C+P K + +
Sbjct: 6 IIGGGPGGYEAALVAAQLGADVTVIE----RD-----GLGGAAVLTDCVPSKTLIATAEV 56
Query: 180 NEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNL----NNNYEKELEKNKIDYFNAKAVF 235
E + G + + V ++ L + + LE+ + +
Sbjct: 57 RTELRRAAELGIRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRL 116
Query: 236 VDK----HRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGAR 272
+D HRVK G E T+ A +IA G P +P A
Sbjct: 117 IDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR--ILPTAE 158
>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 40.2 bits (95), Expect = 8e-04
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169
D+ VIGGG G AA AA M KV L T + T + C P
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLI---THN--------TDTIAELSCNP 42
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 40.2 bits (94), Expect = 9e-04
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
T+ YD+ V+G G+GG+SAA AA KV + + + T W G P
Sbjct: 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWT-----PGNS 60
Query: 173 FHRASLLNEEATT 185
RA + E+
Sbjct: 61 LARADGVVEDKEE 73
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 39.4 bits (92), Expect = 0.001
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 109 NNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCI 168
+ +D+ ++G G G+ A+ + A VA+ V P++ TV GG +G
Sbjct: 6 TSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGG----IG-- 59
Query: 169 PKKLFHRASLLNEEATTSDNFGFHM 193
ASL N + DN+ +H
Sbjct: 60 -------ASLGN---MSEDNWHYHF 74
>gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 39.6 bits (93), Expect = 0.002
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPSQHGTVWGLGG 160
QT+ DL +IG G G+ AA AA N K+AL V P + TV GG
Sbjct: 1 QTFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGG 51
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 39.2 bits (92), Expect = 0.002
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV 163
D+ VIG G G++AA EAA KVA+ + P T W GG
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDA 47
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 38.0 bits (89), Expect = 0.004
Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 40/158 (25%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
YD+ +IGGG G++AA AA KV L G P
Sbjct: 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLIL-------------------EGGEPGGQL- 42
Query: 175 RASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
+ T +N+ F L L +++ EK ++ +
Sbjct: 43 ------TKTTDVENY-----PGFPGGIL-------GPELMEQMKEQAEKFGVEIVEDEVE 84
Query: 235 FVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYPDIPG 270
V+ F ++ T A+ IIA G +PG
Sbjct: 85 KVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPG 122
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 36.4 bits (85), Expect = 0.015
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALF 144
+YD+ VIGGG G+ AA AA M K L
Sbjct: 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLL 33
>gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 588
Score = 36.2 bits (84), Expect = 0.018
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG 166
++D VIG G G+ AA + + + AL V P++ TV GG V +G
Sbjct: 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALG 58
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 36.0 bits (84), Expect = 0.019
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD+ VIGGG+ G+ AA AA ++V L D
Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLID 30
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 35.3 bits (82), Expect = 0.034
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 110 NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+ ++D+ VIGGG G A++AA KVAL +
Sbjct: 7 RLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVE 42
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 34.6 bits (80), Expect = 0.034
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145
D+ VIGGG G+S A E A V L +
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLLE 29
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 35.1 bits (81), Expect = 0.041
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVAL 143
+YD ++G GS G A + V +
Sbjct: 7 EYDYVIVGSGSAGSVLAARLSDAGLSVLV 35
>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases specific
for the biosyntheses of bacteriochlorophyll and
chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction of
the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 388
Score = 34.8 bits (80), Expect = 0.043
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD+ VIGGG G +AA+ A + L +
Sbjct: 1 YDVAVIGGGPSGATAAETLARAGIETILLE 30
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 35.0 bits (82), Expect = 0.046
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALF 144
+YD+ V+GGG G AA AA M K L
Sbjct: 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLL 33
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 34.6 bits (80), Expect = 0.052
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 111 FQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHG---TVWGLGG 160
+ + YD+ VIG G G+ AA EA +VA+ V S G TV GG
Sbjct: 4 VERHSYDVVVIGAGGAGLRAAIEARERGLRVAV---VCKSLFGKAHTVMAEGG 53
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 34.3 bits (79), Expect = 0.052
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 102 RFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD-FVTPSQHGTVWGLG 159
R+++ L + ++ D+ ++G G G++AA A KVA+ + ++P G WG G
Sbjct: 7 RYFEDLLDYAES---DVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPG--GGAWGGG 60
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 34.5 bits (80), Expect = 0.054
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
D D+ V+G G G+ AA E A K+V L D
Sbjct: 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLD 34
>gnl|CDD|237365 PRK13369, PRK13369, glycerol-3-phosphate dehydrogenase;
Provisional.
Length = 502
Score = 34.2 bits (79), Expect = 0.071
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALF 144
YDL VIGGG G A++AA KV L
Sbjct: 6 TYDLFVIGGGINGAGIARDAAGRGLKVLLC 35
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 34.4 bits (79), Expect = 0.075
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 106 YLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVAL 143
YDYD+ ++GG G AK + +KV +
Sbjct: 24 RFKPARTNYDYDVIIVGGSIAGPVLAKALSKQGRKVLM 61
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 34.3 bits (79), Expect = 0.082
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVAL 143
+ D+ VIG G+ G+SAA AA KV +
Sbjct: 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIV 40
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 31.3 bits (72), Expect = 0.085
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFD 145
++G G G+ AA A K V + +
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVLE 26
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 34.0 bits (78), Expect = 0.094
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+YD+ ++G G G SAA+ A V + +
Sbjct: 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLE 33
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 33.2 bits (77), Expect = 0.10
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 102 RFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+ DYL+ D+ ++G G G++AA A KVA+F+
Sbjct: 19 KLLDYLEV-------DVAIVGAGPSGLTAAYYLAKAGLKVAVFE 55
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP
to RuBP, flavoprotein [Carbohydrate transport and
metabolism].
Length = 262
Score = 33.1 bits (76), Expect = 0.12
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 102 RFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
R+++ L + ++ D+ ++G G G++AA A KVA+F+
Sbjct: 20 RYFEDLLDYLES---DVIIVGAGPSGLTAAYYLAKAGLKVAIFE 60
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 33.6 bits (77), Expect = 0.13
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 120 VIGGGSGGISAAKEAASMNKKVAL 143
VIGGG GI+AA E A M KV L
Sbjct: 129 VIGGGVAGITAALELADMGFKVYL 152
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 33.3 bits (76), Expect = 0.14
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
D+ +IGGG G+SAA A V + +
Sbjct: 5 MDVVIIGGGIVGLSAAYYLAERGADVTVLE 34
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 33.3 bits (77), Expect = 0.15
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+D+ +IGGG G+ AA AA ++V L D
Sbjct: 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLID 33
>gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 566
Score = 33.3 bits (76), Expect = 0.16
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGG 160
YD VIGGG G+ +A E AS KVA+ V P++ + GG
Sbjct: 6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGG 50
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 33.1 bits (76), Expect = 0.17
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 108 DNNFQTYDYDLCVIGGGSGGISAAKEAASMNK--KVALFD 145
N Q + D+ VIGGG+ G AA +A N +V L +
Sbjct: 2 AMNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLE 41
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 32.9 bits (76), Expect = 0.17
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFD 145
+IGGG+ G+ AA AA V L +
Sbjct: 2 IIGGGAAGLMAAITAAREGLSVLLLE 27
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 33.0 bits (75), Expect = 0.18
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145
D+ V+G G G+ AA+ AA KKV L +
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIE 166
Score = 27.6 bits (61), Expect = 9.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 120 VIGGGSGGISAAKEAAS 136
++GGG+ G+SAA
Sbjct: 3 IVGGGAAGLSAATTLRR 19
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 32.8 bits (75), Expect = 0.20
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALF---DFV---TPSQHGTVW 156
+D+ VIG G+ G+SAA AA KV L ++V T + GT W
Sbjct: 17 FDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSAGTTW 63
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears to
be present in all complete eubacterial genomes so far,
as well as Saccharomyces cerevisiae. A subset of these
organisms have a closely related protein. GidA is absent
in the Archaea. It appears to act with MnmE, in an
alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34 in
certain tRNAs. The shorter, related protein, previously
called gid or gidA(S), is now called TrmFO (see model
TIGR00137) [Protein synthesis, tRNA and rRNA base
modification].
Length = 617
Score = 32.7 bits (75), Expect = 0.24
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVAL 143
+D+ VIGGG G AA AA M K L
Sbjct: 1 FDVIVIGGGHAGCEAALAAARMGAKTLL 28
>gnl|CDD|240286 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 32.4 bits (74), Expect = 0.30
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGG 160
+ YD V+G G G+ AA + K A + P++ TV GG
Sbjct: 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGG 74
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 32.1 bits (74), Expect = 0.31
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVAL 143
+D+ VIGGG G++AA AA K+VAL
Sbjct: 2 KFDVLVIGGGLAGLTAALAAAEAGKRVAL 30
>gnl|CDD|236185 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 32.3 bits (74), Expect = 0.31
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
Q + YD+ ++G G G+ AA EA + A+ + P++ T GG C
Sbjct: 2 QQHRYDVVIVGAGGAGMRAAIEAGP-RARTAVLTKLYPTRSHTGAAQGGMC--------- 51
Query: 172 LFHRASLLNEEATTSDNFGFHM 193
A+L N E DN+ +H
Sbjct: 52 ----AALANVE---EDNWEWHT 66
>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family
oxidoreductase 2. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp., in Pelotomaculum
thermopropionicum SI (Firmicutes), and in Geobacter
uraniireducens Rf4 (Deltaproteobacteria). The function
of this oxidoreductase is unknown.
Length = 645
Score = 32.4 bits (74), Expect = 0.32
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFD 145
V+GGG G+ AA AA +V LF+
Sbjct: 384 VVGGGPAGLEAAATAARRGHRVTLFE 409
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 31.9 bits (73), Expect = 0.36
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDF 146
D+ VIGGG+ GI AA + A + + V + +F
Sbjct: 354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEF 383
Score = 28.9 bits (65), Expect = 3.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVAL 143
YD+ V+GGG G +AA AA + A+
Sbjct: 213 YDVLVVGGGPAGAAAAIYAARKGLRTAM 240
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 32.1 bits (73), Expect = 0.37
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHG--TVWGLGG 160
D+ V+G G G+ AA E A K+V + D G W GG
Sbjct: 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGG 52
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 985
Score = 31.6 bits (72), Expect = 0.56
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 113 TYDY-----DLCVIGGGSGGISAAKEAASMNKKVALFD 145
TYD D+ V+G G G++AA AA +V L D
Sbjct: 156 TYDKVNAHCDVLVVGAGPAGLAAALAAARAGARVILVD 193
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 31.3 bits (71), Expect = 0.58
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDF 146
+ VIGGG+ G+ AA + A + + V L +F
Sbjct: 356 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEF 385
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 30.8 bits (70), Expect = 0.73
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD+ V+G G G SAA A +V L +
Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLE 30
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 30.8 bits (71), Expect = 0.78
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFD 145
++G G G +AA+ A + +V + D
Sbjct: 173 ILGAGVVGENAARVALGLGAEVTVLD 198
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 31.1 bits (71), Expect = 0.79
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGG 160
D+ V+G G G++AA A ++V + T W GG
Sbjct: 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGG 61
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members of
the pfam01266 family) is syntenically associated with a
family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 30.3 bits (69), Expect = 1.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YDL ++G G G++ A AA V + +
Sbjct: 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIE 30
>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 30.4 bits (69), Expect = 1.1
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 19/80 (23%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKK---VALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
YD+ ++G G G+ AA AA + VA+ P + +V GGT
Sbjct: 6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGT----------- 54
Query: 173 FHRASLLNEEATTSDNFGFH 192
A++L E D+F H
Sbjct: 55 ---AAVLYPE--KGDSFDLH 69
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 30.1 bits (68), Expect = 1.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD----FVTPSQHGTVW 156
DL V+GGG G++ A++ + V D + P+ +G VW
Sbjct: 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYG-VW 72
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 30.2 bits (68), Expect = 1.4
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
D D+ VIGGG+ G AA AA V L + +H +G VN IP K
Sbjct: 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLE-KAHVRHSGALAMGMDGVNNAVIPGK 68
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 30.1 bits (68), Expect = 1.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD+ VIG G G++AA A KV + +
Sbjct: 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLE 33
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 30.0 bits (68), Expect = 1.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFDF 146
V+GGG G +AAK A + V + D
Sbjct: 173 VLGGGVVGTNAAKIAIGLGADVTILDL 199
>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring).
This is family of Rossmann fold oxidoreductases that
catalyzes the NADPH-dependent hydroxylation of lysine at
the N6 position, EC:1.14.13.59.
Length = 335
Score = 29.8 bits (68), Expect = 1.6
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 240 RVKFAGEERTVSAQNFIIAVGGRPTYPD----IPGARLL 274
+ G E+T A+N ++ G P P+ +PG R+
Sbjct: 132 HTRDTGTEQTYLARNLVLGTGTTPYIPECAKPLPGERVF 170
>gnl|CDD|182409 PRK10361, PRK10361, DNA recombination protein RmuC; Provisional.
Length = 475
Score = 30.0 bits (67), Expect = 1.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 228 YFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSLLSGVDPPT 287
YFNA+ D + + A +E S +N I +G R Y +PG R L + + V+P
Sbjct: 267 YFNAE----DDYTRESALQEHIASVRNHIRLLG-RKDYQQLPGLRTLDYVLMFIPVEPAF 321
Query: 288 LIFLE 292
L+ L+
Sbjct: 322 LLALD 326
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 29.6 bits (67), Expect = 1.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVAL 143
+D+ +IGGG G+S A A KK A+
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAI 28
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 29.7 bits (67), Expect = 2.1
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFD 145
V+GGG G SAA EAAS +V L +
Sbjct: 414 VVGGGLAGCSAAIEAASCGAQVILLE 439
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 29.5 bits (67), Expect = 2.1
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 38/155 (24%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRA 176
D+ +IG G G++AA AA N K L + P GG +
Sbjct: 1 DVIIIGAGPAGLTAAIYAARANLKPLLIEGGEP---------GGQLTTTTEV-------- 43
Query: 177 SLLNEEATTSDNF-GFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF 235
+N+ GF + + L++ +++ E E K+D
Sbjct: 44 ----------ENYPGF--PEGISGPELMEKMKEQAVKFGAEIIYE-EVIKVD-------K 83
Query: 236 VDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
+ + G+ + +A+ IIA G IPG
Sbjct: 84 SGRPFKVYTGDGKEYTAKAVIIATGASARKLGIPG 118
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 29.5 bits (67), Expect = 2.2
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 230 NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
+ D +V A + +S ++A+G Y IPGA
Sbjct: 79 EVTDIDRDAKKVTLA-DLGEISYDYLVVALGSETNYFGIPGA 119
>gnl|CDD|224118 COG1197, Mfd, Transcription-repair coupling factor (superfamily II
helicase) [DNA replication, recombination, and repair /
Transcription].
Length = 1139
Score = 29.9 bits (68), Expect = 2.2
Identities = 14/48 (29%), Positives = 17/48 (35%)
Query: 226 IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL 273
DY + V RV A EE +F A YP +P L
Sbjct: 266 FDYLPKNTLIVVDERVLEAAEEFEKEVADFYEARLSDGEYPPLPPEAL 313
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 29.5 bits (67), Expect = 2.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+ D+ V+G G+ G AA EAA+ +V + +
Sbjct: 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLE 50
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 29.5 bits (67), Expect = 2.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFD 145
VIGGG G+SAA M V +F+
Sbjct: 142 VIGGGPAGLSAAYHLRRMGHAVTIFE 167
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 29.4 bits (66), Expect = 2.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 116 YDLCVIGGGSGGISA 130
YDL +IGGG G+SA
Sbjct: 5 YDLIIIGGGPAGLSA 19
>gnl|CDD|149741 pfam08775, ParB, ParB family. ParB is a component of the par
system which mediates accurate DNA partition during cell
division. It recognises A-box and B-box DNA motifs. ParB
forms an asymmetric dimer with 2 extended
helix-turn-helix (HTH) motifs that bind to A-boxes. The
HTH motifs emanate from a beta sheet coiled coil DNA
binding module. Both DNA binding elements are free to
rotate around a flexible linker, this enables them to
bind to complex arrays of A- and B-box elements on
adjacent DNA arms of the looped partition site.
Length = 127
Score = 28.1 bits (63), Expect = 3.2
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKI 226
KK+ + L+DNV + I+++++ + +K +I
Sbjct: 24 KKNISLDELIDNVSEEIKDIDSELSPDEQKKEI 56
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 29.0 bits (65), Expect = 3.3
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 113 TY-DYDLCVIGGGSGGISAAKE-AASMNKKVALFD-FVTPSQHGTVWGLGG 160
TY D D+ ++G GS G+S A E + + N KVA+ + V+P G W LGG
Sbjct: 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG--GGAW-LGG 136
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and rfbD.
It is known experimentally in E. coli, Mycobacterium
tuberculosis, and Klebsiella pneumoniae [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 377
Score = 29.0 bits (65), Expect = 3.3
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
+D ++G G GI A A +NK+V + V H +GG C + LFH+
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNKRVLV---VEKRNH-----IGGNCYDEVD-ETILFHQ 52
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 29.0 bits (66), Expect = 3.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 114 YDYDLCVIGGGSGGISAAKE 133
YD +IGGG G+S A +
Sbjct: 1 AMYDFVIIGGGIVGLSTAMQ 20
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 28.9 bits (65), Expect = 3.5
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLG 159
D+ ++G G G++ A A V L + G+
Sbjct: 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIA 46
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 29.0 bits (66), Expect = 3.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFDF 146
VIGGG+ G+ AA + A + K V + +F
Sbjct: 356 VIGGGNSGVEAAIDLAGIVKHVTVLEF 382
>gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid
dehydrogenase XI-like, classical (c) SDRs.
17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a
group of isozymes that catalyze activation and
inactivation of estrogen and androgens. 17betaHSD type
XI, a classical SDR, preferentially converts
3alpha-adiol to androsterone but not numerous other
tested steroids. This subgroup of classical SDRs also
includes members identified as retinol dehydrogenases,
which convert retinol to retinal, a property that
overlaps with 17betaHSD activity. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRS are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes have a
3-glycine N-terminal NAD(P)(H)-binding pattern
(typically, TGxxxGxG in classical SDRs and TGxxGxxG in
extended SDRs), while substrate binding is in the
C-terminal region. A critical catalytic Tyr residue
(Tyr-151, human 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering), is often found in a conserved
YXXXK pattern. In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) or additional
Ser, contributing to the active site. Substrates for
these enzymes include sugars, steroids, alcohols, and
aromatic compounds. The standard reaction mechanism is a
proton relay involving the conserved Tyr and Lys, as
well as Asn (or Ser). Some SDR family members, including
17 beta-hydroxysteroid dehydrogenase contain an
additional helix-turn-helix motif that is not generally
found among SDRs.
Length = 243
Score = 28.4 bits (64), Expect = 3.8
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 118 LCVIGGGSGGISA--AKEAASMNKKVALFD 145
+ +I GG GI A E A KV + D
Sbjct: 1 IVLITGGGSGIGRLLALEFAKRGAKVVILD 30
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino
acid transport and metabolism].
Length = 421
Score = 28.9 bits (65), Expect = 3.9
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVAL 143
+D+ +IGGG G++ K+ A+
Sbjct: 3 FDVAIIGGGLAGLTCGLALQQAGKRCAI 30
>gnl|CDD|119307 pfam10787, YfmQ, Uncharacterized protein from bacillus cereus
group. This family is conserved in the Bacillus cereus
group. Several members are called YfmQ but the function
is not known.
Length = 149
Score = 27.8 bits (62), Expect = 4.1
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 215 NNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQN 254
N E E + I FN +A+F++K+ + EE + +N
Sbjct: 52 KNLEGEEKSRIIQEFN-EAIFLEKYYIYPGDEELFLHPEN 90
>gnl|CDD|237221 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 584
Score = 28.6 bits (64), Expect = 4.2
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 112 QTYD--YDLCVIGGGSGGISAAKEAAS 136
Q +D D+ V+G G GG++AA AA+
Sbjct: 6 QNFDREVDVLVVGSGGGGMTAALTAAA 32
>gnl|CDD|236887 PRK11259, solA, N-methyltryptophan oxidase; Provisional.
Length = 376
Score = 28.3 bits (64), Expect = 4.9
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTP-----SQHG 153
YD+ VIG GS G +A A +V D P S HG
Sbjct: 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHG 46
>gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 28.4 bits (64), Expect = 5.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFDFV 147
V+GGG G+ A +AA V LF V
Sbjct: 8 VVGGGLAGLMATIKAAEAGVHVDLFSLV 35
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 28.2 bits (63), Expect = 5.3
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMN-KKVALFD 145
D+ +IG G G++AA +F+
Sbjct: 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFE 39
>gnl|CDD|225000 COG2089, SpsE, Sialic acid synthase [Cell envelope biogenesis,
outer membrane].
Length = 347
Score = 28.1 bits (63), Expect = 5.5
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 5 KLGGSEVS----TFITAEISSNNAGEITQGYAL 33
K+G + FI AEI +N+ G++ + L
Sbjct: 3 KIGNRTIGKDKKPFIIAEIGANHNGDLERAKEL 35
>gnl|CDD|237027 PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.
Length = 508
Score = 28.2 bits (64), Expect = 5.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALF 144
YDL VIGGG G A++AA V L
Sbjct: 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLC 35
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 28.2 bits (63), Expect = 5.6
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 211 RNLNNNYEKELEKNKIDY-FNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD 267
++N EL+K +I Y N + ++ + V F ++ +++ + + G T+P+
Sbjct: 189 ADMNQPILDELDKREIPYRLNEEIDAINGNEVTF----KSGKVEHYDMIIEGVGTHPN 242
>gnl|CDD|197369 cd09909, HIV-1-like_HR1-HR2, heptad repeat 1-heptad repeat 2 region
(ectodomain) of the gp41 subunit of human
immunodeficiency virus (HIV-1), and related domains.
This domain family spans both heptad repeats of the
glycoprotein (gp)/transmembrane subunit of various
endogenous retroviruses (ERVs) and infectious
retroviruses, including human, simian, and feline
immunodeficiency viruses (HIV, SIV, and FIV), bovine
immunodeficiency-like virus (BIV), equine infectious
anaemia virus (EIAV), and Jaagsiekte sheep retrovirus
(JSRV), mouse mammary tumour virus (MMTV) and various
ERVs including sheep enJSRV-26, and human ERVs (HERVs):
HERV-K_c1q23.3 and HERV-K_c12q14.1. This domain belongs
to a larger superfamily containing the HR1-HR2 domain of
ERVs and infectious retroviruses, including Ebola virus,
and Rous sarcoma virus. Proteins in this family lack the
canonical CSK17-like immunosuppressive sequence, and the
intrasubunit disulfide bond-forming CX6C motif found in
linker region between HR1 and HR2 in the
Ebola_RSV-like_HR1-HR2 family. N-terminal to the HR1-HR2
region is a fusion peptide (FP), and C-terminal is a
membrane-spanning region (MSR). Viral infection involves
the formation of a trimer-of-hairpins structure (three
HR1 helices, buttressed by three HR2 helices lying in
antiparallel orientation). In this structure, the FP
(inserted in the host cell membrane) and MSR (inserted
in the viral membrane) are in close proximity. ERVs are
likely to originate from ancient germ-line infections by
active retroviruses. Some modern ERVs, those that
integrated into the host genome post-speciation, have a
currently active exogenous counterpart, such as JSRV.
Some ERVs play specific roles in the host, including
placental development, protection of the host from
infection by related pathogenic and exogenous
retroviruses, and genome plasticity. Included in this
subgroup are ERVs from domestic sheep that are related
to JSRV, the agent of transmissible lung cancer in
sheep, for example enJSRV-26 that retains an intact
genome. These endogenous JSRVs protect the sheep against
JSRV infection and are required for sheep placental
development. HERV-K_c12q14.1 is potentially a complete
envelope protein; however, it does not appear to be
fusogenic.
Length = 128
Score = 27.4 bits (61), Expect = 5.9
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 199 WKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
W+ +D++++ I NL + +LEK +
Sbjct: 94 WENKIDDLEEKILNLLEEAQNQLEKLADGLLS 125
>gnl|CDD|235376 PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.
Length = 224
Score = 27.8 bits (63), Expect = 6.2
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 198 TWKTLVDNV--QKYIRNLNNNYEKELEKNKI------DYFNA 231
+WK ++ + Y + L E K D F A
Sbjct: 9 SWKEVLKPEFKKPYFQELLEFLRAERAAGKTIYPPGEDIFRA 50
>gnl|CDD|107297 cd06302, PBP1_LsrB_Quorum_Sensing, Periplasmic binding domain of
autoinducer-2 (AI-2) receptor LsrB from Salmonella
typhimurium and its close homologs. Periplasmic binding
domain of autoinducer-2 (AI-2) receptor LsrB from
Salmonella typhimurium and its close homologs from other
bacteria. The members of this group are homologous to a
family of periplasmic pentose/hexose sugar-binding
proteins that function as the primary receptors for
chemotaxis and transporters of many sugar based solutes
in bacteria and archaea and that are a member of the
type I periplasmic binding protein superfamily. LsrB
binds a chemically distinct form of the AI-2 signal that
lacks boron, in contrast to the Vibrio harveyi AI-2
signaling molecule that has an unusual furanosyl borate
diester. Hence, many bacteria coordinate their gene
expression according to the local density of their
population by producing species specific AI-2. This
process of quorum sensing allows LsrB to function as a
periplasmic AI-2 binding protein in interspecies
signaling.
Length = 298
Score = 27.9 bits (63), Expect = 6.9
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 119 CVIGGGSGGISAAKEA---ASMNKKVALFDFVTPSQ 151
+IG S GI A A A + KVA+ P+Q
Sbjct: 188 GIIGPTSVGIPGAARAVEEAGLKGKVAVTGLGLPNQ 223
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 28.2 bits (63), Expect = 7.1
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 113 TYD--YDLCVIGGGSGGISAAKEAAS 136
T+D YD+ V+G G GG+ AA AA
Sbjct: 2 TWDETYDVVVVGSGGGGMCAALAAAD 27
>gnl|CDD|215375 PLN02697, PLN02697, lycopene epsilon cyclase.
Length = 529
Score = 27.9 bits (62), Expect = 7.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVAL 143
DL VIG G G++ A E+A + V L
Sbjct: 110 DLVVIGCGPAGLALAAESAKLGLNVGL 136
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine
oxidase catalyzes the oxidative demethylation of
sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The
enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism, Amino
acids and amines].
Length = 380
Score = 27.9 bits (62), Expect = 7.7
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD-FVTP----SQHG 153
+D+ V+G G G AA A KK L + F P S HG
Sbjct: 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHG 43
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 27.9 bits (63), Expect = 7.8
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 119 CVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162
++GGG G++AA A +V +F+ + GL +
Sbjct: 3 AIVGGGIAGLAAAYRLAKRGHEVTVFE-----ADDQLGGLAASF 41
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is
involved in the biosynthesis of the thiamine precursor
thiazole, and is repressed by thiamine. This family
includes c-thi1, a Citrus gene induced during natural
and ethylene induced fruit maturation and is highly
homologous to plant and yeast thi genes involved in
thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 27.5 bits (61), Expect = 7.8
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFD-FVTPSQHGTVWGLG 159
D+ ++G G G++AA A KV + + + G WG G
Sbjct: 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG--GGSWGGG 64
>gnl|CDD|214624 smart00331, PP2C_SIG, Sigma factor PP2C-like phosphatases.
Length = 193
Score = 27.3 bits (61), Expect = 8.0
Identities = 12/43 (27%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 95 QEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASM 137
G FYD + L I G AA A SM
Sbjct: 12 DATQVGGDFYDVVKLPEGRL---LIAIADVMGKGLAAALAMSM 51
>gnl|CDD|233702 TIGR02061, aprA, adenosine phosphosulphate reductase, alpha
subunit. During dissimilatory sulfate reduction or
sulfur oxidation, adenylylsulfate (APS) reductase
catalyzes reversibly the two-electron reduction of APS
to sulfite and AMP. Found in several bacterial lineages
and in Archaeoglobales, APS reductase is a heterodimer
composed of an alpha subunit containing a noncovalently
bound FAD, and a beta subunit containing two [4Fe-4S]
clusters. Described by this model is the alpha subunit
of APS reductase, sharing common evolutionary origin
with fumarate reductase/succinate dehydrogenase
flavoproteins [Central intermediary metabolism, Sulfur
metabolism].
Length = 614
Score = 27.9 bits (62), Expect = 8.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVAL 143
DL ++GGG GG AA EA K L
Sbjct: 1 DLLIVGGGMGGCGAAFEAVYWGDKKGL 27
>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 27.8 bits (62), Expect = 8.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS 150
YD+ V+GGG G + A A + VA+ + P
Sbjct: 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPK 38
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 27.5 bits (61), Expect = 9.0
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 116 YDLCVIGGGSGGISAAKEA--ASMN 138
YD+ ++G G G+SAA EA A MN
Sbjct: 62 YDIVIVGAGGAGMSAAIEAKDAGMN 86
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 27.7 bits (62), Expect = 9.0
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 222 EKNKID-YFNAKAVFVD-KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL 273
E+N I Y K + +D ++V RTVS IIA G P IPG+ L
Sbjct: 70 EENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDL 123
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 27.7 bits (62), Expect = 9.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+D ++G G G A+ AA + K+V + +
Sbjct: 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVE 31
>gnl|CDD|215257 PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase.
Length = 627
Score = 27.8 bits (62), Expect = 9.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVAL 143
D+ V+GGG+ G A +AA+ +V L
Sbjct: 72 LDVLVVGGGATGAGVALDAATRGLRVGL 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,443,894
Number of extensions: 1489804
Number of successful extensions: 1819
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1743
Number of HSP's successfully gapped: 163
Length of query: 296
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 200
Effective length of database: 6,679,618
Effective search space: 1335923600
Effective search space used: 1335923600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)