RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7665
(296 letters)
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 230 bits (588), Expect = 3e-72
Identities = 82/165 (49%), Positives = 108/165 (65%), Gaps = 5/165 (3%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
++YDYDL +IGGGSGG++AAKEAA KKV + DFVTP+ GT WGLGGTCVNVGCIPKK
Sbjct: 29 KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 88
Query: 172 LFHRASLLNEEATTSDNFGFHM--KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
L H+A+LL + S N+G+ + W +++ VQ +I +LN Y L + K+ Y
Sbjct: 89 LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYE 148
Query: 230 NAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
NA F+ HR+K G+E+ SA+ F+IA G RP Y IPG
Sbjct: 149 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGD 193
Score = 63.8 bits (156), Expect = 1e-11
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
NAGE+TQG+A + G K+ D+ IGIHP CAE
Sbjct: 464 NAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVF 499
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 231 bits (592), Expect = 4e-72
Identities = 79/167 (47%), Positives = 105/167 (62%), Gaps = 6/167 (3%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
YDYDL VIGGGSGG++A KEAA K A+ D+V P+ GT WGLGGTCVNVGCIPKK
Sbjct: 104 SKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKK 163
Query: 172 LFHRASLLNEEATTSDNFGFHM---KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDY 228
L H+A LL+ +++FG+ + K S W T+V+ VQ +I +LN Y+ L N++ Y
Sbjct: 164 LMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTY 223
Query: 229 FNAKAVFVDKHRVKFAGE---ERTVSAQNFIIAVGGRPTYPDIPGAR 272
NAK + H V+ + T++ I+A G RP YP+IPGA
Sbjct: 224 LNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAV 270
Score = 64.3 bits (157), Expect = 9e-12
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
NAGEITQGYA+ + +GA K DFD IGIHPTC+E
Sbjct: 543 NAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETF 578
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 225 bits (575), Expect = 1e-70
Identities = 79/165 (47%), Positives = 110/165 (66%), Gaps = 6/165 (3%)
Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLF 173
+DL VIGGGSGG++ AKEAA + KKVA+ D+V PS GT WGLGGTCVNVGCIPKKL
Sbjct: 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLM 64
Query: 174 HRASLLNEEATTSDNFGFHM--KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
H+A+LL + ++G+ + WKT+ + VQ ++++LN + +L+ K+ YFN
Sbjct: 65 HQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI 124
Query: 232 KAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYP-DIPGAR 272
KA FVD+H V+ G+ +SA++ +IA GGRP YP + GA
Sbjct: 125 KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGAL 169
Score = 63.3 bits (155), Expect = 2e-11
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
NAGE+TQG+ALG+ GA +GIHPTC+E +
Sbjct: 436 NAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEV 471
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 225 bits (575), Expect = 1e-70
Identities = 84/165 (50%), Positives = 107/165 (64%), Gaps = 5/165 (3%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS-QHGTVWGLGGTCVNVGCIPKK 171
+YDYDL VIGGGS G++ AKEA +VA DFV P+ GT WG+GGTCVNVGCIPKK
Sbjct: 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKK 66
Query: 172 LFHRASLLNEEATTSDNFGFHM--KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
L H+ASLL E + +G+++ K W LV +VQ +I+++N +L K++Y
Sbjct: 67 LMHQASLLGEAVHEAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYI 126
Query: 230 NAKAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAR 272
N FVD H K ERT++AQ F+IAVGGRP YPDIPGA
Sbjct: 127 NGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAV 171
Score = 63.7 bits (156), Expect = 1e-11
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
AGE+ QG+A + G +GIHPT AE
Sbjct: 436 VAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEF 471
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 223 bits (570), Expect = 8e-70
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
+ YDL VIG GSGG+ A AAS++ K+VA+ D LGGTCVNVGC+PKK
Sbjct: 1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKK 60
Query: 172 LFHRASLLNEEATTSDNFGFHMKK---SFTWKTLVDNVQKYIRNLNNNYEKEL-EKNKID 227
L + + S FG+ + + WK L+ K + +N++YE + +
Sbjct: 61 LMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT 120
Query: 228 YFNAKAVFVDKHRV-------KFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
+ D H V + T+ + ++A G P + I G
Sbjct: 121 FHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGD 171
Score = 62.6 bits (153), Expect = 3e-11
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
++ EI Q A+ + +GA DF IG+HPT AE +
Sbjct: 432 SSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEEL 467
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 221 bits (565), Expect = 2e-69
Identities = 62/160 (38%), Positives = 89/160 (55%), Gaps = 12/160 (7%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
T +DL IGGGSGG++ A++AA+ K+VAL + LGGTCVNVGC+PKK+
Sbjct: 2 TQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIE---------SKALGGTCVNVGCVPKKV 52
Query: 173 FHRASLLNEEATTSDNFGFHM-KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
AS L E + FG + W LV +YI +N+ ++ +E+ I +
Sbjct: 53 MWYASHLAEAVRDAPGFGVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDG 112
Query: 232 KAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
A FVD H ++ G+ +SA + +IA GGRP P +PGA
Sbjct: 113 HARFVDAHTIEVEGQ--RLSADHIVIATGGRPIVPRLPGA 150
Score = 60.6 bits (148), Expect = 1e-10
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
A E+ QG+A+ V +GA K DFD + IHP AE +
Sbjct: 409 GADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEEL 444
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 220 bits (563), Expect = 8e-69
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
+ +DL VIG GSGG+ A AA++ K+VA+ D T LGGTCVNVGC+PKK
Sbjct: 5 SKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKK 64
Query: 172 LFHRASLLNEEATTSDNFGFHMKK---SFTWKTLVDNVQKYIRNLNNNYEKEL-EKNKID 227
L + + S FG+ WK L+ + + ++N +YE + +D
Sbjct: 65 LMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLD 124
Query: 228 YFNAKAVFVDKHRVK-------FAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
+F K+ V + + + A + ++A G P P IPG
Sbjct: 125 FFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGI 175
Score = 62.6 bits (153), Expect = 3e-11
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
A EI Q + + L A DF IG+HPT AE +
Sbjct: 436 GAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEEL 471
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 218 bits (559), Expect = 2e-68
Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
+DYDL VIGGGSGG+ + + AA++ KKVA+ + + GGTCV GC+PKK
Sbjct: 2 SAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAE---------EFRYGGTCVIRGCVPKK 52
Query: 172 LFHRASLLNEEATTSDNFGFHM-KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
L+ AS E + FG+ + + F W LV ++ I L Y K L + +
Sbjct: 53 LYVYASQFAEHFEDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILD 112
Query: 231 AKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGARL 273
+A + VK +TV+A+ +IAVGG P+ D +PG L
Sbjct: 113 TRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHEL 156
Score = 61.0 bits (149), Expect = 9e-11
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
+AGE+ Q + + G K DFD + +HPT AE +
Sbjct: 411 DAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEEL 446
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 217 bits (555), Expect = 9e-68
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 13/163 (7%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
YD VIGGGSGG+++A+ AA + + A+ + LGGTCVNVGC+PKK+
Sbjct: 18 VASYDYLVIGGGSGGLASARRAAELGARAAVVES---------HKLGGTCVNVGCVPKKV 68
Query: 173 FHRASLLNEEATTSDNFGFHM-KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
++ +E ++GF + F W+ + + Y+ LN Y+ L K+ I+
Sbjct: 69 MWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG 128
Query: 232 KAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGA 271
A F + + +A + +IA GG P+ P IPGA
Sbjct: 129 HAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGA 171
Score = 62.5 bits (153), Expect = 3e-11
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
E+ QG+A+ V +GA K DFD + IHPT +E
Sbjct: 439 GCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSE 472
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 216 bits (553), Expect = 2e-67
Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 11/163 (6%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
++D+DL VIG GSGG+ AA+ A ++ K+VA+ + + +GGTCV GC+PKKL
Sbjct: 24 SFDFDLFVIGSGSGGVRAARLAGALGKRVAIAE---------EYRIGGTCVIRGCVPKKL 74
Query: 173 FHRASLLNEEATTSDNFGFHM-KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
+ AS +E + S FG+ F W+ LV K I L Y + L+ + + + +
Sbjct: 75 YFYASQYAQEFSKSIGFGWKYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYES 134
Query: 232 KAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTY-PDIPGARL 273
+AVFVD+H ++ + +SA+ +IA G + I G+ L
Sbjct: 135 RAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDL 177
Score = 61.8 bits (151), Expect = 6e-11
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
NAGEI Q + + K FD + +HPT +E
Sbjct: 431 NAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSE 464
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 211 bits (540), Expect = 2e-65
Identities = 58/171 (33%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
T YD VIGGGSGG+++A+ AAS K L + LGGTCVNVGC+PKK
Sbjct: 8 NTKHYDYLVIGGGSGGVASARRAASYGAKTLLVE---------AKALGGTCVNVGCVPKK 58
Query: 172 LFHRASLLNEEATTSDNFGFHM-------KKSFTWKTLVDNVQKYIRNLNNNYEKELEKN 224
+ AS L + ++ +G + +F W Y+ LN Y+K LEK
Sbjct: 59 VMWYASDLATRVSHANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKE 118
Query: 225 KIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPD-IPGA 271
K+D A F V+ SA + ++A GG+ +P+ IPG
Sbjct: 119 KVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGF 169
Score = 62.5 bits (153), Expect = 3e-11
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
++ EI QG+ + + +GA K DFD + IHPT AE +
Sbjct: 432 SSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEEL 467
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 206 bits (528), Expect = 6e-64
Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 13/161 (8%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
T YD IGGGSGGI++ AA +K AL + LGGTCVNVGC+PKK+
Sbjct: 2 TKHYDYIAIGGGSGGIASINRAAMYGQKCALIEA---------KELGGTCVNVGCVPKKV 52
Query: 173 FHRASLLNEEA-TTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
A+ + E ++GF F W+TL+ + YI ++ +YE L KN +D
Sbjct: 53 MWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIK 112
Query: 231 AKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
A FVD ++ GE T++A + +IA GGRP++PDIPG
Sbjct: 113 GFARFVDAKTLEVNGE--TITADHILIATGGRPSHPDIPGV 151
Score = 61.4 bits (150), Expect = 8e-11
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
E+ QG+A+ + +GA K+DFD + IHPT AE
Sbjct: 411 GMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAE 444
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 202 bits (517), Expect = 7e-62
Identities = 66/169 (39%), Positives = 94/169 (55%), Gaps = 21/169 (12%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
YDL VIGGGSGG++AA+ AA N KVAL + LGGTCVNVGC+PKK+
Sbjct: 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVE---------KSRLGGTCVNVGCVPKKIMF 52
Query: 175 RASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
A+ +++ S ++GF K SF LV+ KYI+ LNN Y + L K+K+D + A
Sbjct: 53 NAASVHDILENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTAS 112
Query: 235 FVDKHRVKFAG------------EERTVSAQNFIIAVGGRPTYPDIPGA 271
F+ ++R+ G E + +N +IAVG +P +P + G
Sbjct: 113 FLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGI 161
Score = 59.6 bits (145), Expect = 3e-10
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
NA EI QG+A+ + + A K+DFD I IHPT AE
Sbjct: 457 NADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEF 492
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 135 bits (342), Expect = 2e-36
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 19/165 (11%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
+YD IGGG+ G + +M + + D + LGG+C + C+P L
Sbjct: 41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVD-----RWPF---LGGSCPHNACVPHHL 92
Query: 173 FHRASLLNEEATTSDNFGFHM-----KKSFTWKTLVDNVQKYIRNLN--NNYEKELEKNK 225
F + A G + +K K +VD + + N++ + + N
Sbjct: 93 FSDCAAELMLA--RTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNL 150
Query: 226 IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
N A +D H V+ AG+ A+N I+AVG P D+PG
Sbjct: 151 EYILNCPAKVIDNHTVEAAGK--VFKAKNLILAVGAGPGTLDVPG 193
Score = 36.1 bits (84), Expect = 0.012
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISL 60
A + Q + + G + + + I L
Sbjct: 473 GAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQL 510
Score = 27.3 bits (61), Expect = 6.5
Identities = 3/55 (5%), Positives = 16/55 (29%), Gaps = 9/55 (16%)
Query: 218 EKELEKNKID-YFNAKAVFVDK--------HRVKFAGEERTVSAQNFIIAVGGRP 263
+++ ++ + +++ E + + +G +P
Sbjct: 262 LDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQP 316
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 123 bits (311), Expect = 2e-32
Identities = 45/165 (27%), Positives = 67/165 (40%), Gaps = 16/165 (9%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP-KK 171
+ VIG G ++AA +A +V L + GT +GGTCVNVGC+P K
Sbjct: 2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIE------RGT---IGGTCVNVGCVPSKI 52
Query: 172 LFHRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNL-NNNYEKELEK-NKIDY 228
+ A + + + + G + L+ Q + L + YE L I
Sbjct: 53 MIRAAHIAHLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITV 112
Query: 229 FNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG 270
+ +A F D + G ER V ++A G P P IPG
Sbjct: 113 VHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPG 157
Score = 27.5 bits (62), Expect = 6.6
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISL 60
AGE+ Q AL + Q+ + + T E + L
Sbjct: 413 EAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKL 450
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 111 bits (281), Expect = 4e-28
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 14/164 (8%)
Query: 109 NNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCI 168
N + + D+ +IG G+ G+ A + A KV L + G TC VGC+
Sbjct: 2 NAMKVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA---------YGTTCARVGCM 52
Query: 169 PKKLFHRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEK-NKI 226
P KL A+ + A+ +D FG + + S K ++ +Q + +E ++
Sbjct: 53 PSKLLIAAADASYHASQTDLFGIQVDRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQ 112
Query: 227 DYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
D A F+D+H ++ + V A+ +IA G RP
Sbjct: 113 DKIRGFAKFLDEHTLQ-VDDHSQVIAKRIVIATGSRPN--YPEF 153
Score = 28.7 bits (65), Expect = 2.7
Identities = 9/42 (21%), Positives = 12/42 (28%)
Query: 17 AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
AE+ A I A Q + HP E +
Sbjct: 418 AEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEEGL 459
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 109 bits (276), Expect = 2e-27
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 11/165 (6%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD-FVTPSQHGTVWGLGGTCVNVGCIPKK 171
+ +D+ VIG G GG AA ++A + K AL + + LGGTC+NVGCIP K
Sbjct: 1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA---LGGTCLNVGCIPSK 57
Query: 172 -LFHRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
L + +E + G + + T++ + +RNL ++ N + F
Sbjct: 58 ALLDSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLF 117
Query: 230 NAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
+ +V+ G + + +N I+A G +P +IP A
Sbjct: 118 EGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPV--EIPPA 160
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 109 bits (275), Expect = 2e-27
Identities = 47/158 (29%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
YDL VIG G GG AA AA + KV + +GG C+NVGCIP K L
Sbjct: 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE---------VGGVCLNVGCIPTKALL 56
Query: 174 HRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
H A+ ++ FG K K L + ++ L L+ N ++ A
Sbjct: 57 H-AAETLHHLKVAEGFGLKAKPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFA 115
Query: 234 VFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
V V+ GE A++ I+A G P ++ G
Sbjct: 116 RLVGPKEVEVGGE--RYGAKSLILATGSEPL--ELKGF 149
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 108 bits (272), Expect = 5e-27
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
+ + V+G G GG AA AA + +KV + + LGG C+NVGCIP K L
Sbjct: 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN---------LGGVCLNVGCIPSKALI 53
Query: 174 HRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
AS E+A S+ G + + + + + ++ L E L+ NK++ +
Sbjct: 54 S-ASHRYEQAKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGE 112
Query: 233 AVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
A FVD + RV +T + +N IIA G RP ++P
Sbjct: 113 AYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPI--ELPNF 151
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 107 bits (269), Expect = 1e-26
Identities = 45/160 (28%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
YD+ V+G G GG AA AA + A+ + GG C+NVGCIP K L
Sbjct: 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY---------WGGVCLNVGCIPSKALL 53
Query: 174 HRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
A L++ + FG + +F + D +K ++KNKI +
Sbjct: 54 RNAELVHIFTKDAKAFGISGEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYG 113
Query: 234 VFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG 270
F D + + G +V+ N IIA G +PG
Sbjct: 114 TFADANTLLVDLNDGGTESVTFDNAIIATGSSTR--LVPG 151
Score = 28.2 bits (64), Expect = 3.4
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
+ E+ L + + HPT +EA+
Sbjct: 415 DVAELLPELTLAQRWDLTASELARNVHTHPTMSEAL 450
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 106 bits (268), Expect = 2e-26
Identities = 46/157 (29%), Positives = 64/157 (40%), Gaps = 12/157 (7%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
YDL VIG G GG AA AA + KV + + + LGGTC+ VGCIP K
Sbjct: 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVE-----KEKA---LGGTCLRVGCIPSKALLE 53
Query: 176 ASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
+ EA G +K L+ + K ++ E +KN I A
Sbjct: 54 TTERIYEAKKGL-LGAKVKGVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTAR 112
Query: 235 FVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
F+ + +V + A+ +IA G P P A
Sbjct: 113 FLSERKVLVEETGEELEARYILIATGSAPL--IPPWA 147
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 107 bits (269), Expect = 2e-26
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
Q D D+ VIG G GG AA +AA + K + ++ T LGGTC+NVGCIP K
Sbjct: 3 QPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE-----KNET---LGGTCLNVGCIPSK 54
Query: 172 -LFHRASLLNEEATTSD--NFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKID 227
L + S A +D + G M + +++ ++ L ++NK+
Sbjct: 55 ALLN-NSHYYHMAHGTDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVV 113
Query: 228 YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
+ N K++V G + + +N +IA G T PG
Sbjct: 114 HVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVT--PFPGI 158
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 106 bits (268), Expect = 2e-26
Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 19/165 (11%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
QT L +IGGG GG AA A + L + LGGTC+N+GCIP K
Sbjct: 2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA---------LGGTCLNIGCIPSK 52
Query: 172 -LFHRASLLNEEATTSDNFGFH----MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKI 226
L H + +A+ V + L L+K+ +
Sbjct: 53 ALIH-VAEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGV 111
Query: 227 DYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
+ A +D +V+ G+ + ++ ++A G ++P
Sbjct: 112 KVVHGWAKVLDGKQVEVDGQ--RIQCEHLLLATGSSSV--ELPML 152
Score = 27.1 bits (61), Expect = 8.0
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 217 YEKELEKNKID-YFNAKAVFVDKH-RVKFA--GEERTVSAQNFIIAVGGRP 263
+ L+K I + + + G + + A ++AVG RP
Sbjct: 218 VAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRP 268
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 106 bits (267), Expect = 3e-26
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LFH 174
YD+ VIGGG GG A+ +AA + K A + + G LGGTC+NVGCIP K L H
Sbjct: 3 YDVVVIGGGPGGYVASIKAAQLGMKTACVE-----KRGA---LGGTCLNVGCIPSKALLH 54
Query: 175 RASLLNEEATTSDNFGFHMKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
L ++ +G + + + ++ ++ L E +KNK+ Y+ +
Sbjct: 55 ATHLYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGE 114
Query: 233 AVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
F H ++ G++ + + IIA G PT ++P
Sbjct: 115 GSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPT--ELPFL 154
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 105 bits (265), Expect = 6e-26
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 15/162 (9%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
YDL VIG G GG A +AA + KVA+ + + T GGTC+NVGCIP K L
Sbjct: 25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVE-----KRST---YGGTCLNVGCIPSKALL 76
Query: 174 HRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
H + + ++ + G + + ++ + +++ + +KNKID F
Sbjct: 77 HASEMFHQAQHGLEALGVEVANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGT 136
Query: 233 AVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
+ + +V GEE+ + A+N +IA G IPG
Sbjct: 137 GKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--GIPGV 176
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 105 bits (264), Expect = 9e-26
Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
+ D+ +IGGG GG AA +AA + K + + G LGGTC+NVGCIP K L
Sbjct: 6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIE-----KRGA---LGGTCLNVGCIPSKALL 57
Query: 174 HRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
H + + +E + N G + ++ K + NL E +KNK+ Y
Sbjct: 58 HSSHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGY 117
Query: 233 AVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
FV + GE V ++ IIA G +PG
Sbjct: 118 GKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVK--SLPGV 157
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 104 bits (262), Expect = 1e-25
Identities = 36/162 (22%), Positives = 50/162 (30%), Gaps = 20/162 (12%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
YD+ VIG G G A A V + D G LGG C+ GC+P K +
Sbjct: 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMAD-----PKGE---LGGNCLYSGCVPSKTVR 55
Query: 174 HRASLLNEEATTSDNFG--FHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
T N K D VQ+ + + + ++
Sbjct: 56 E-VIQTAWRLTNIANVKIPLDFSTVQDRK---DYVQE--LRFKQHKRNMSQYETLTFYKG 109
Query: 232 KAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG 270
D V G+E + IIA G +PG
Sbjct: 110 YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPG 151
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 104 bits (261), Expect = 2e-25
Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 26/175 (14%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
+YD+ V+GGG GG SAA AA KVA+ + ++ T LGG C+NVGCIP K
Sbjct: 3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVE-----RYKT---LGGVCLNVGCIPSK 54
Query: 172 -LFHRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
L H + + +E G + L + L + K+D
Sbjct: 55 ALLH-NAAVIDEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVI 113
Query: 230 NAKAVFVDKHRVK-------------FAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
F+D H ++ GE++ V+ +N IIA G R T +P
Sbjct: 114 QGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT--KLPFI 166
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 102 bits (257), Expect = 7e-25
Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 20/168 (11%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
+ ++GGG G AA AA+ + + + G+GG V C+P K F
Sbjct: 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD------GIGGAAVLDDCVPSKTFIA 56
Query: 176 ASLLNEEATTSDNFGFHMKK---SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
++ L E + + GFH+ + + V+ + + +L + +
Sbjct: 57 STGLRTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR 116
Query: 233 AVFVD------KHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
+D +HR+K G A ++A G P +P A
Sbjct: 117 GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPR--ILPSA 162
Score = 28.3 bits (64), Expect = 3.8
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 23 NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
A E+ A+ V + + ++P+ + +I
Sbjct: 422 IASELILPIAVAVQNRITVNELAQTLAVYPSLSGSI 457
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 102 bits (256), Expect = 8e-25
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 22/169 (13%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
+D+ +IGGG G AA +AA + A + + G LGGTC+NVGCIP K L
Sbjct: 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVE-----KRGK---LGGTCLNVGCIPSKALL 56
Query: 174 HRASLLNEEATTSDNFG--FHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
+ + L ++ T + G + ++ L E +KNK+ Y+
Sbjct: 57 NNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKG 116
Query: 232 KAVFVDKHRVKFAGEE---------RTVSAQNFIIAVGGRPTYPDIPGA 271
F D+ +++ + + +N I+A G T PG
Sbjct: 117 NGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT--PFPGI 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 1e-07
Identities = 64/415 (15%), Positives = 115/415 (27%), Gaps = 188/415 (45%)
Query: 14 FITAEISSNNAGEITQGYALGVMLGAYKQDFDALIG--IHPTCAEAISL----------- 60
++++ + + G+ Q L + L ++ + L G IH A A L
Sbjct: 67 YVSSLVEPSKVGQFDQ--VLNLCLTEFENCY--LEGNDIH---ALAAKLLQENDTTLVKT 119
Query: 61 -SWIKGY--------------------------------------NIE---PEVIKLHTP 78
IK Y N + E+ L+
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 79 Y------LVLAKARFLLP----TLECQEVYHDG-RFYDYLDNNFQTYDYD-LCVIGGGSG 126
Y L+ A L TL+ ++V+ G ++L+N T D D L
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL------- 232
Query: 127 GISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTS 186
S S + + H V T +G P +L T
Sbjct: 233 --SIP---ISC-PLIGVIQLA----HYVV-----TAKLLGFTPGELRSYLK-----GATG 272
Query: 187 DNFGFHMK---------KSFTWKTLVDNVQKYIRNL------------------------ 213
H + ++ +W++ +V+K I L
Sbjct: 273 -----HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 214 NNNYE--------------KELEKNKIDYFNAKAVFVDKHRVKFAGEERTV------SAQ 253
N E ++++ ++ N+ + V A+
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQD-YVNKTNSH-----------LPAGKQVEISLVNGAK 375
Query: 254 NFIIAVGGRPTYPDIPGARL-LRTLSLLSGVD----P-----PTLI--FLEHISA 296
N +++ G P + G L LR SG+D P FL +++
Sbjct: 376 NLVVS--GPPQ--SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VAS 425
Score = 40.0 bits (93), Expect = 8e-04
Identities = 31/144 (21%), Positives = 42/144 (29%), Gaps = 56/144 (38%)
Query: 76 HTPYLVLAKARFLLPTLECQE-----------VYH--DGRFYDYLDNNFQTYDYDL---- 118
H+ LV A + L VY DG + + +
Sbjct: 428 HSHLLVPASDL-INKDLVKNNVSFNAKDIQIPVYDTFDGS-------DLRVLSGSISERI 479
Query: 119 --CVIGGGSGGISAAK-EAASMNKKVALFDFVTPSQHGTVWGLG--------GTCVNVGC 167
C+I K E + K + DF P G GLG GT V V
Sbjct: 480 VDCII------RLPVKWETTTQFKATHILDF-GP---GGASGLGVLTHRNKDGTGVRV-- 527
Query: 168 IPKKLFHRASLLNEEATTSDNFGF 191
I A L + D++GF
Sbjct: 528 IV------AGTL--DINPDDDYGF 543
Score = 33.5 bits (76), Expect = 0.097
Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 34/148 (22%)
Query: 168 IPKKLFHRASLLNEE-----ATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEK--- 219
+P F AS L E+ ++ F + + T + V K++ +++ E
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPT----TPAELVGKFLGYVSSLVEPSKV 77
Query: 220 ----ELEKNKIDYFNAKAVFV---DKHRV--KFAGEERT-VSAQNFII-------AVGGR 262
++ + F ++ D H + K E T + +I + R
Sbjct: 78 GQFDQVLNLCLTEFENC--YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 263 PTYPDIPGARLLRTLSLLSGVDPPTLIF 290
P A L R + G IF
Sbjct: 136 PFDKKSNSA-LFRAVG--EGNAQLVAIF 160
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 2e-05
Identities = 54/330 (16%), Positives = 91/330 (27%), Gaps = 107/330 (32%)
Query: 25 GEITQGYA--LGVMLGAYKQDFDA------------------LIGIHPTCAEAISLSWI- 63
GE Y L V A+ +FD +I + + L W
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 64 --KGYNIEPEVIK--LHTPYLVLA---KARFLLPTLECQEVYHDGRFYDYLDNNFQTY-D 115
K + + ++ L Y L K P++ +Y + R D L N+ Q +
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM-TRMYIEQR--DRLYNDNQVFAK 128
Query: 116 YD----------------------LCVIG-GGSGGISAAKEAASMNKKVALFDFVTPSQH 152
Y+ + + G GSG A + K DF
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF------ 182
Query: 153 GTVWGLGGTCVNVG--CIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYI 210
W +N+ P+ + L N+ S K + ++Q +
Sbjct: 183 KIFW------LNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 211 RNL--NNNYEKEL-------EKNKIDYFN----------------------AKAVFVDKH 239
R L + YE L + FN + +D H
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 240 RVKFAGEERTVSAQNFIIAVGGRPTYPDIP 269
+ +E + + RP D+P
Sbjct: 295 SMTLTPDE---VKSLLLKYLDCRPQ--DLP 319
Score = 38.7 bits (89), Expect = 0.002
Identities = 41/282 (14%), Positives = 83/282 (29%), Gaps = 122/282 (43%)
Query: 5 KLGGSEVSTFITAEISSNNAGEITQGY-ALGVMLGAYKQDF--DALIGIHPTCAEAISLS 61
+ +++T I + ++ E + + L V F A I PT +SL
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--------FPPSAHI---PT--ILLSLI 395
Query: 62 WIKGYNIEPEVI--KLHTPYLVLAK----ARFLLPTL------ECQEVY--H-------- 99
W + V+ KLH Y ++ K + +P++ + + Y H
Sbjct: 396 WFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 100 ---------------DGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALF 144
D FY ++ + L + +++ LF
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHI-------GHHL--------------KNIEHPERMTLF 493
Query: 145 -----DFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTW 199
DF + + +K+ H ++ N + +
Sbjct: 494 RMVFLDF--------RF-----------LEQKIRHDSTAWNASGSILN------------ 522
Query: 200 KTLVD--NVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKH 239
TL + YI + + YE+ + + F+ K
Sbjct: 523 -TLQQLKFYKPYICDNDPKYERLVN----AILD----FLPKI 555
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 43.1 bits (102), Expect = 5e-05
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD-FVTPSQHGTVWGLGG 160
YDL +IG GS G +A A V + D + P QHG+ G
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTR 48
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 43.1 bits (102), Expect = 7e-05
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 13/82 (15%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
+ D VIGGG G+ AA + + + + GG
Sbjct: 2 KVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQ--------- 52
Query: 172 LFHRASLLNEEATTSDNFGFHM 193
ASL N + + DN H
Sbjct: 53 ----ASLGNSKMSDGDNEDLHF 70
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 42.4 bits (100), Expect = 1e-04
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD-FVTPSQHGTVWGLGG 160
YD+ V+GGG G++ A + A +V + + +++G G
Sbjct: 5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAER 50
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 41.5 bits (98), Expect = 2e-04
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 16/84 (19%)
Query: 110 NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169
+++D V+G G G+ AA + A + P++ TV GG
Sbjct: 13 PVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGIN------- 65
Query: 170 KKLFHRASLLNEEATTSDNFGFHM 193
A+L N E DN+ +H
Sbjct: 66 ------AALGNME---DDNWRWHF 80
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 40.7 bits (96), Expect = 4e-04
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 110 NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169
++D VIG G G+ AA + + + AL V P++ TV GG
Sbjct: 2 KLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGIT------- 54
Query: 170 KKLFHRASLLNEEATTSDNFGFHMKKS 196
+L N DN+ +HM +
Sbjct: 55 ------VALGNTH---EDNWEWHMYDT 72
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 40.2 bits (94), Expect = 5e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD+ +IGGG G SAA + + K+ L D
Sbjct: 4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVD 36
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 40.0 bits (94), Expect = 6e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD+ V+GGG GG +AA+ AA K + +
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIE 34
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 39.3 bits (92), Expect = 0.001
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+ + V+G GS G +A+ A V L D
Sbjct: 119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVD 151
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 39.0 bits (90), Expect = 0.001
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD+ ++G G G + A+E KVA+FD
Sbjct: 44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 39.2 bits (91), Expect = 0.002
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 113 TYD-----YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD D+ V+G G G++AA+EA+ +V L D
Sbjct: 121 YYDHVHVHTDVLVVGAGPAGLAAAREASRSGARVMLLD 158
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 39.0 bits (91), Expect = 0.002
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 110 NFQTYDYDLCVIGGGSGGISAAKEAASMNK----KVALFDFVTPSQHGTV 155
+ + D+ +IGGG G AA EAA K KV L + + G V
Sbjct: 17 PTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV 66
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 38.9 bits (91), Expect = 0.002
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
D+ +IG G G++AA A KV L +
Sbjct: 124 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLE 156
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 38.1 bits (88), Expect = 0.002
Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 23/145 (15%)
Query: 102 RFYDYLDNNFQTYDYDLCVIGGGSGGISAAKE-AASMNKKVALFDFVTPSQHGTVWGLGG 160
R+ + + D+ V+G GS G+SAA E + + N +VA+ + Q + GG
Sbjct: 29 RYMTDMITY---AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIE-----QSVSP---GG 77
Query: 161 TCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKE 220
+ +LF + D G + T+ + + K
Sbjct: 78 GA----WLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIM----SKL 129
Query: 221 LEKNKIDYFNAKAV---FVDKHRVK 242
L + + FNA A V +RV
Sbjct: 130 LARPNVKLFNAVAAEDLIVKGNRVG 154
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 37.9 bits (89), Expect = 0.003
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALF---DF 146
DL VIGGG G A +AA V + D
Sbjct: 3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDL 37
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 38.0 bits (88), Expect = 0.003
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 114 YDY-----DLCVIGGGSGGISAAKEAASMNKKVALFD 145
+ D+ +IGGG GI AA E VAL +
Sbjct: 102 GEIERVVVDVAIIGGGPAGIGAALELQQ-YLTVALIE 137
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 37.9 bits (89), Expect = 0.003
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
D+ +IG G+ G+ A EA ++V + D
Sbjct: 28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVID 57
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 37.8 bits (89), Expect = 0.003
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+ +IG G+ G+ A + A + K V +FD
Sbjct: 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFD 34
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 37.7 bits (88), Expect = 0.003
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
Y+ D+ V G G G++A+ EAA V + +
Sbjct: 39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLE 71
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 37.9 bits (89), Expect = 0.003
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD+ VIGGG G+ AA AA V L D
Sbjct: 26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLD 56
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 37.5 bits (86), Expect = 0.004
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 102 RFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAA--SMNKKVALFD 145
R++ LD D+ ++G GS G+SAA A + KV + +
Sbjct: 55 RYFKDLDKF---AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIE 97
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 37.7 bits (88), Expect = 0.004
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 20/84 (23%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169
QT+ DL ++G G G+ AA AA N K+AL V P + TV GG+
Sbjct: 2 QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSA------- 54
Query: 170 KKLFHRASLLNEEATTSDNFGFHM 193
A + D+F +H
Sbjct: 55 ------AVAQDH-----DSFEYHF 67
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 37.4 bits (85), Expect = 0.004
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 6/111 (5%)
Query: 101 GRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNK--KVALFD-FVTPSQHGTVWG 157
G + ++ +F +D+ VIG G G + A + + L + P++ G
Sbjct: 22 GSVWAHVGQHFTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATIL 81
Query: 158 LGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQK 208
G P +A E+ G + L+ +
Sbjct: 82 APGVWTAQDI-PAGQEAQAEWTREQ--LLGALGSGKTLEVEDRPLLHLLPA 129
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 37.4 bits (86), Expect = 0.004
Identities = 24/170 (14%), Positives = 49/170 (28%), Gaps = 14/170 (8%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFV------TPSQHGTVWGLGGTC-VNVGCI 168
+DL +G G I+ A + + + HG ++
Sbjct: 31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKD 90
Query: 169 PKKLF---HRASLLNEEATTSDNFGFHMKKSFTW--KTLVDNVQKYIRNLNNN--YEKEL 221
L S +N F +F D ++ + Y +E+
Sbjct: 91 LVSLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEV 150
Query: 222 EKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
+ + + + GEE + + +++ GG P P + A
Sbjct: 151 LRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRA 200
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 37.0 bits (85), Expect = 0.004
Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 102 RFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNK--KVALFD 145
R++ LD + + D+ ++G GS G+SAA +++ ++ + +
Sbjct: 69 RYFADLDAH---AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVE 111
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 37.3 bits (87), Expect = 0.006
Identities = 35/174 (20%), Positives = 48/174 (27%), Gaps = 65/174 (37%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLL 179
V+G G G++ A AA+ +V LFD +GG IP K
Sbjct: 378 VVGAGPAGLAFAINAAARGHQVTLFD---AHSE-----IGGQFNIAKQIPGK-------- 421
Query: 180 NEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKH 239
EE Y + +E +
Sbjct: 422 -EE---------------------------FYETLRYYRRMIEVTGVT------------ 441
Query: 240 RVKFAGEERTVSA-QNF---IIAVGGRPTYPDIPGARLLRTLS---LLSGVDPP 286
+K T Q F I+A G P P I G + LS +L P
Sbjct: 442 -LKL-NHTVTADQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPV 493
Score = 33.1 bits (76), Expect = 0.11
Identities = 21/149 (14%), Positives = 39/149 (26%), Gaps = 24/149 (16%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALF--DFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRAS 177
+IG G G A + + + F + G G + +
Sbjct: 499 IIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIV 558
Query: 178 LLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID-YFNAKAVFV 236
+L +A G + K+ W L + +
Sbjct: 559 MLQRKA---SKPGQGLGKTTGWIHR----------------TTLLSRGVKMIPGVSYQKI 599
Query: 237 DKHRVKF--AGEERTVSAQNFIIAVGGRP 263
D + GE + ++ N +I G P
Sbjct: 600 DDDGLHVVINGETQVLAVDNVVICAGQEP 628
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 36.9 bits (86), Expect = 0.006
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 109 NNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALF---DF 146
DL VIGGG G A +A + L DF
Sbjct: 12 GEMSEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDF 52
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 36.9 bits (85), Expect = 0.006
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNK------KVALFDFVTPS-QHGTVWGLGGTCVNV 165
+ DL ++GGG G AA EA K+ L D + GL +
Sbjct: 20 EHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTYL 79
Query: 166 G 166
G
Sbjct: 80 G 80
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 36.9 bits (86), Expect = 0.007
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 109 NNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALF---DF 146
Q + DL +IGGG G A +AA+ K L DF
Sbjct: 26 QKMQQEELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDF 66
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 36.6 bits (84), Expect = 0.007
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVAL 143
VIG G G +A + +
Sbjct: 2 NGGYVPAVVIGTGYGAAVSALRLGEAGVQTLM 33
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 36.5 bits (85), Expect = 0.008
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWG 157
+D+ V+G GS G++A + A K L D P
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHH 45
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 36.4 bits (85), Expect = 0.008
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 218 EKELEKNKIDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL-- 273
EK + I+ + + V +D ++ A + + ++A G R D+P A L
Sbjct: 64 EKFFQDQAIELISDRMVSIDREGRKLLLASG-TAIEYGHLVLATGARNRMLDVPNASLPD 122
Query: 274 ---LRTL 277
LRTL
Sbjct: 123 VLYLRTL 129
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 36.2 bits (84), Expect = 0.011
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
D+ V+G G G SAA A KV L +
Sbjct: 125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIE 156
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 35.5 bits (83), Expect = 0.016
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 110 NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALF 144
+ ++D+ VIGGG GI AA AA M K A+F
Sbjct: 22 AWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMF 56
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 35.2 bits (82), Expect = 0.018
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+D+ +IGG G+SAA + K + L D
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVD 32
Score = 27.9 bits (63), Expect = 4.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 237 DKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
+ V+ G +A I+A+G P+I G
Sbjct: 87 GEFIVEIDGGR-RETAGRLILAMGVTDELPEIAG 119
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 35.1 bits (80), Expect = 0.021
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 106 YLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+ ++ +D ++G G G A+ AS ++V + D
Sbjct: 20 TTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVD 59
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 34.8 bits (81), Expect = 0.025
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
D VIG G G++A+ K++ALFD
Sbjct: 7 IDCAVIGAGPAGLNASLVLGRARKQIALFD 36
Score = 28.3 bits (64), Expect = 3.4
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 218 EKELEK-NKIDYFNAKAVFVDK-----HRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
E+ K + Y+ V + K + A+ ++A G + +P IP
Sbjct: 67 LNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHT-KYLAERVLLATGMQEEFPSIPN 124
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 34.8 bits (80), Expect = 0.026
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
D+ VIG G G AA KV + +
Sbjct: 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVE 35
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 34.8 bits (80), Expect = 0.029
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASM-NKKVALFD-FVTPSQHGTVWGLGG 160
T L ++G G+ G S A A V + D + PS +
Sbjct: 4 TKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAGNDVNK 53
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 34.7 bits (79), Expect = 0.034
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD ++G G G A E +NKKV + +
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIE 31
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 33.7 bits (78), Expect = 0.034
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+D+ V+GGG G+SAA A KV + D
Sbjct: 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLD 31
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 34.1 bits (79), Expect = 0.035
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALF 144
Y + ++G G G A A +V L
Sbjct: 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLL 32
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 34.4 bits (80), Expect = 0.035
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 218 EKELEKNKID-YFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL- 273
E ++K ID + NA+ + VD RV+ G E++ + A G P P I G L
Sbjct: 66 EVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLK 125
Query: 274 ----LRTL 277
Sbjct: 126 GVFTADLP 133
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 34.1 bits (78), Expect = 0.043
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+DL VIGGG GG + A A +V L +
Sbjct: 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLE 37
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
TRMFO; tRNA methyltransferase FAD folate, FAD,
flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus
thermophilus} PDB: 3g5q_A* 3g5r_A*
Length = 443
Score = 34.3 bits (79), Expect = 0.046
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALF 144
+ V+G G G AA + V LF
Sbjct: 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLF 30
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 33.9 bits (77), Expect = 0.051
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+ ++G G G ++ A +V + D
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIID 33
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 34.0 bits (79), Expect = 0.054
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 111 FQTYDYDLCVIGGGSGGISAAKEAASMNKKVALF 144
F +D+ +IGGG G AA AA M ++ L
Sbjct: 24 FYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLL 57
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 33.7 bits (78), Expect = 0.054
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
Y+ VIGGG G + A A NK ALF+
Sbjct: 18 YEAVVIGGGIIGSAIAYYLAKENKNTALFE 47
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 34.0 bits (77), Expect = 0.055
Identities = 8/32 (25%), Positives = 9/32 (28%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVAL 143
VIG G GG AA +
Sbjct: 8 DGDRVPALVIGSGYGGAVAALRLTQAGIPTQI 39
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 33.6 bits (77), Expect = 0.071
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVAL-----------FDFVTPSQHGTVWGLGGTCVN 164
YD V+GGG G+ AA++ + KKV L + + + G +GG ++
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH 61
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 33.2 bits (76), Expect = 0.077
Identities = 24/176 (13%), Positives = 45/176 (25%), Gaps = 49/176 (27%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD-----------------FVTPSQHGTVWGL 158
+ + +IG G+ GI A + +TPS +G+
Sbjct: 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGM 64
Query: 159 GGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYE 218
+ + F + + +Y++ + N+YE
Sbjct: 65 PDM-------------------NAISMDTSPAFTFNEEHISG---ETYAEYLQVVANHYE 102
Query: 219 KELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVG--GRPTYPDIPG 270
+ N + + A T A +A G P P G
Sbjct: 103 LNIF------ENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNFPKKPFKYG 152
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 33.3 bits (77), Expect = 0.083
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+ D D VIG G G++ A+ A+ +V + +
Sbjct: 2 STDIDCIVIGAGVVGLAIARALAAGGHEVLVAE 34
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 33.2 bits (77), Expect = 0.097
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALF 144
++ YD+ V+G G G AA A L
Sbjct: 19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLI 50
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 33.0 bits (75), Expect = 0.10
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+ +IGGG G A + V +++
Sbjct: 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYE 53
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 32.7 bits (73), Expect = 0.13
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 8/124 (6%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFD--------FVTPSQHGTVWGLGGTCVNVGCI 168
+ +IG G G+SAA+ + +V LFD + +G
Sbjct: 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDR 63
Query: 169 PKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDY 228
+ ++ + + V+ + + + + +
Sbjct: 64 RFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPSPDEQVRWVGKPGMSAITRAMRGDMPVS 123
Query: 229 FNAK 232
F+ +
Sbjct: 124 FSCR 127
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 32.2 bits (74), Expect = 0.17
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 218 EKELEKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL- 273
+ E ++ A+ V +D H VK + I A GG P GA L
Sbjct: 72 AQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGS-AIEYGKLIWATGGDPRRLSCVGADLA 130
Query: 274 ----LRTL 277
+RT
Sbjct: 131 GVHAVRTK 138
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 32.2 bits (74), Expect = 0.19
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 218 EKELEKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL- 273
+ +ID + +D + T+SA +IA G R +PG++L
Sbjct: 64 ADWYGEARIDMLTGPEVTALDVQTRTISLDDG-TTLSADAIVIATGSRARTMALPGSQLP 122
Query: 274 ----LRTL 277
LRT
Sbjct: 123 GVVTLRTY 130
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 32.2 bits (74), Expect = 0.19
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 229 FNAK---AVFVDKH---RVKFAGEERTVSAQNFIIAVGG--RPTYPDIPG 270
FN + A +V+ V EE V+ + I A G PDI G
Sbjct: 108 FNTRVTAARYVENDRLWEVTLDNEE-VVTCRFLISATGPLSASRMPDIKG 156
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 32.2 bits (74), Expect = 0.21
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 229 FNAK---AVFVDKH---RVKFAGEERTVSAQNFIIAVGG--RPTYPDIPG 270
F + A+++D V E A+ + AVG +P++PG
Sbjct: 108 FGTEVTSALYLDDENLWEVTTDHGE-VYRAKYVVNAVGLLSAINFPNLPG 156
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 32.0 bits (73), Expect = 0.24
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145
V+G G GG+ A A ++ + +
Sbjct: 2 RAVVVGAGLGGLLAGAFLARNGHEIIVLE 30
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 32.0 bits (73), Expect = 0.24
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALF---DFV-----TPSQHGTVWGLGGTCVN 164
T D+ ++G G G++AA VA+ D V T + G V +GG V+
Sbjct: 3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS 62
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 31.7 bits (72), Expect = 0.25
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALF---DFV------TPSQHGTVWGLGGTCVN 164
D+ V+GGG G++AAK V + D V +Q LGG+ V
Sbjct: 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVG 62
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.28
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHR 240
W+ + +K + N +++EKNKI+ A F +
Sbjct: 107 VMEQEWR---EKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY-QQP 149
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 31.9 bits (73), Expect = 0.28
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 109 NNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHG---TVWGLGG 160
N + D+ +IG G+ G+S A A +V + ++ T + GG
Sbjct: 2 NTLPEHSCDVLIIGSGAAGLSLALRLAD-QHQVIV---LSKGPVTEGSTFYAQGG 52
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 31.9 bits (72), Expect = 0.28
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 104 YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
Y ++ + VIG G G+ A A M + +
Sbjct: 96 YKFVAKAPENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVE 137
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 31.3 bits (72), Expect = 0.36
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+D+ ++G G+ G SAA AA VA+ D
Sbjct: 17 FDVVIVGAGAAGFSAAVYAARSGFSVAILD 46
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 31.0 bits (71), Expect = 0.40
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
D+ ++G G G+ A D
Sbjct: 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVD 35
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 31.2 bits (71), Expect = 0.41
Identities = 24/156 (15%), Positives = 34/156 (21%), Gaps = 52/156 (33%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLL 179
++G G G AA+ V L D ++ +GG V +P
Sbjct: 394 IVGAGPSGSEAARVLMESGYTVHLTD---TAEK-----IGGHLNQVAALPGL-------- 437
Query: 180 NEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKH 239
E W D E ++ K K
Sbjct: 438 -GE----------------WSYHRD-----------YRETQITK-----LLKKNKESQLA 464
Query: 240 RVKFAGEERTVSAQNF---IIAVGGRPTYPDIPGAR 272
+ V IIA G R
Sbjct: 465 LGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLT 500
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 31.4 bits (72), Expect = 0.42
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 229 FNAK---AVFVDKH---RVKFAGEERTVSAQNFIIAVGG--RPTYPDIPG 270
F+ A F + V + + A+ I+A G P P+ PG
Sbjct: 115 FHTTVTAAAFDEATNTWTVDTNHGD-RIRARYLIMASGQLSVPQLPNFPG 163
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 31.0 bits (71), Expect = 0.42
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 248 RTVSAQNFIIAVGG--RPTYPDIPG 270
VSA+ ++A G P G
Sbjct: 144 DEVSARFLVVAAGPLSNANTPAFDG 168
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 30.9 bits (71), Expect = 0.42
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFD 145
VIG G+ G +AA+ A M V + D
Sbjct: 173 VIGAGTAGYNAARIANGMGATVTVLD 198
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 30.9 bits (71), Expect = 0.42
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFD 145
++GGG G AAK A + +V +FD
Sbjct: 172 ILGGGVVGTEAAKMAVGLGAQVQIFD 197
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 30.9 bits (71), Expect = 0.44
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFD 145
++GGG+ G +AAK A M +V + D
Sbjct: 171 ILGGGTVGTNAAKIALGMGAQVTILD 196
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 30.8 bits (70), Expect = 0.51
Identities = 20/143 (13%), Positives = 42/143 (29%), Gaps = 37/143 (25%)
Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC-------------- 162
VIG G GG+ +A + +V +F+ + GG
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFE-----RLPIT---GGRFTNLSYKGFQLSSGA 53
Query: 163 -VNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTL-VDNVQKYIRNLNNNYEKE 220
+ P F ++ S + V+ ++ N +Y K
Sbjct: 54 FHMLPNGPGGPLAC-------------FLKEVEASVNIVRSEMTTVRVPLKKGNPDYVKG 100
Query: 221 LEKNKIDYFNAKAVFVDKHRVKF 243
+ + F + + D+ ++
Sbjct: 101 FKDISFNDFPSLLSYKDRMKIAL 123
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 30.6 bits (70), Expect = 0.53
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 18/71 (25%)
Query: 218 EKELEKNKID-YFNAKAVFVDKHRVKFAGEERTVSAQNF-------IIAVGGRPTYPDIP 269
K I+ +A +D+ + V + ++A G R P I
Sbjct: 67 LDWYRKRGIEIRLAEEAKLIDR-------GRKVVITEKGEVPYDTLVLATGARAREPQIK 119
Query: 270 GAR---LLRTL 277
G LRT+
Sbjct: 120 GKEYLLTLRTI 130
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 30.6 bits (70), Expect = 0.61
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 19/68 (27%)
Query: 222 EKNKID-YFNAKAVFVDKHRVKFAGEERTVSAQN--------FIIAVGGRPTYPDIPGAR 272
EKN I + A +D + V+ ++ IIA G +P A
Sbjct: 73 EKNNIKVITSEFATSIDP-------NNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHAD 125
Query: 273 ---LLRTL 277
L +
Sbjct: 126 EIFSLYSY 133
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 30.2 bits (69), Expect = 0.67
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD+ +IGGG G+ A V + +
Sbjct: 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIE 37
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 30.2 bits (68), Expect = 0.71
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 113 TYDYDLCVIGGGSGGISAAKE-AASMNKKVALF 144
+ D + +IG G G++A + +
Sbjct: 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTIL 36
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 30.4 bits (68), Expect = 0.73
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 119 CVIGGGSGGISAAKEAASMNKKVALFD 145
V+G G+GG + A A + V +D
Sbjct: 8 AVLGLGNGGHAFAAYLALKGQSVLAWD 34
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 30.3 bits (68), Expect = 0.80
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 119 CVIGGGSGGISAAKEAASMNKKVALFDFVT 148
++G G G++ + S +K A +
Sbjct: 6 AILGAGPSGMAQLRAFQSAQEKGAEIPELV 35
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 30.1 bits (67), Expect = 0.82
Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 116 YDLCVIGGGSGGISAAKEAAS-MNKKVALFD 145
+DL V+G G G++ A+ A+ ++K+V + +
Sbjct: 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 30.1 bits (67), Expect = 0.83
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 109 NNFQTYDYDLCVIGGGSGGISAAKE 133
N + +IG G G+ AA
Sbjct: 2 NTVSPAKKKVIIIGAGIAGLKAAST 26
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 30.2 bits (66), Expect = 0.88
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 14/57 (24%)
Query: 100 DGRFYDYLDNNFQTYD--------------YDLCVIGGGSGGISAAKEAASMNKKVA 142
G Y + D+ +Y Y + ++GGG+GGI+A E + +
Sbjct: 27 SGINYRHPDSALVSYPVAAAAPLGRLPAGNYRIAIVGGGAGGIAALYELGRLAATLP 83
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 30.0 bits (68), Expect = 0.96
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 115 DYDLCVIGGGSGGISAAK 132
D+ VIGGG G+SA
Sbjct: 3 SVDVVVIGGGQSGLSAGY 20
Score = 27.3 bits (61), Expect = 6.7
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 244 AGEERTVSAQNFIIAVG--GRPTYPDIPGA 271
A + R A+ I A G G P+ G
Sbjct: 113 ARDGRQWLARAVISATGTWGEAYTPEYQGL 142
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 29.9 bits (67), Expect = 0.96
Identities = 31/193 (16%), Positives = 50/193 (25%), Gaps = 57/193 (29%)
Query: 119 CVIGGGSGGISAAKE--AASMNKKVALFDFVTPSQHGTVWGLGGTCV---NVGCIPKKLF 173
+IG G G+ AK A +V LF+ + G+ GG +
Sbjct: 10 AIIGAGPSGLVTAKALLAEKAFDQVTLFE-----RRGSP---GGVWNYTSTLSNKLPVPS 61
Query: 174 HRASLLNEEATTSDNFGFHMKKSFTWKTLVDN-------------------------VQK 208
L E + S ++ L N +Q+
Sbjct: 62 TNPILTTEPIV--GPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQE 119
Query: 209 YIRNLNNNYEKELEKNKIDYFNAKAVFVDKH------RVKFAGEERTVSAQNF---IIAV 259
Y R ++ + ++K K +S F I
Sbjct: 120 YQRIYAQPLLPFIK------LATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICN 173
Query: 260 G--GRPTYPDIPG 270
G P P+I G
Sbjct: 174 GHYEVPYIPNIKG 186
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 30.1 bits (68), Expect = 0.97
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 120 VIGGGSGGISAAKE--AASMNKKVALFD 145
V+GGG+GG +AAK A + +V L +
Sbjct: 7 VVGGGTGGATAAKYIKLADPSIEVTLIE 34
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 30.0 bits (68), Expect = 1.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD+ ++G G G +AA +A + L
Sbjct: 213 YDVLIVGSGPAGAAAAVYSARKGIRTGLMG 242
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 29.9 bits (66), Expect = 1.1
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 100 DGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
GR Y YD+ ++G G + + KK+ + D
Sbjct: 9 SGRENLYFQGE----HYDVIILGTGLKECILSGLLSHYGKKILVLD 50
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 29.9 bits (68), Expect = 1.1
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 12/71 (16%)
Query: 218 EKELEKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL- 273
I + ++ + +V + + ++A GGRP + +
Sbjct: 67 PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGR-ALDYDRLVLATGGRPRPLPVASGAVG 125
Query: 274 -------LRTL 277
LRTL
Sbjct: 126 KANNFRYLRTL 136
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 29.8 bits (66), Expect = 1.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+YD+ V+G G + + KKV D
Sbjct: 6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMD 36
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 29.4 bits (67), Expect = 1.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
YD+ ++G G G +AA +A + L
Sbjct: 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMG 31
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 29.5 bits (67), Expect = 1.3
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 9/64 (14%)
Query: 222 EKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL----- 273
++++ A D H V + T+ ++A G P
Sbjct: 70 RAPEVEWLLGVTAQSFDPQAHTVALSDGR-TLPYGTLVLATGAAPRALPTLQGATMPVHT 128
Query: 274 LRTL 277
LRTL
Sbjct: 129 LRTL 132
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 29.4 bits (66), Expect = 1.3
Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 119 CVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
V+G G G++ A+ A++ V + + + + +G + + + +
Sbjct: 161 AVLGLGRTGMTIARTFAALGANVKVGA-RSSAHLARITEMGLVPFHTDELKEHV 213
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 29.5 bits (66), Expect = 1.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALF 144
+ + V+GGG G+ +A E KV +
Sbjct: 12 HSVVVLGGGPAGLCSAFELQKAGYKVTVL 40
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 29.6 bits (67), Expect = 1.4
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 120 VIGGGSGGISAAKEAASMNKKVALFD 145
V+G G G+ AA+ V L +
Sbjct: 396 VVGAGPSGLEAARALGVRGYDVVLAE 421
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 29.5 bits (67), Expect = 1.4
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 219 KELEKNKID-YFNAKAVFVDKH----RVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
+ELE Y + +D G+ + I A G +P P I G
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKG 156
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 29.2 bits (66), Expect = 1.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
DL +IGGG GI AA + N + +
Sbjct: 15 RDLTIIGGGPTGIFAAFQCGMNNISCRIIE 44
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 29.4 bits (66), Expect = 1.5
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 115 DYDLCVIGGGSGGISAA 131
+ D+ ++G G G+SAA
Sbjct: 35 EADVVIVGAGPAGLSAA 51
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 29.3 bits (66), Expect = 1.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 120 VIGGGSGGISAAKEAASMNKKV 141
VIGGG GGI+ A ++ +
Sbjct: 7 VIGGGVGGIATAYNLRNLMPDL 28
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 29.2 bits (65), Expect = 2.0
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+T ++ V+GGG G++ A S L +
Sbjct: 13 RTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLE 46
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 29.1 bits (66), Expect = 2.0
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 225 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSLLSGVD 284
KI+ K + + E + I++ G +P P IPG + L L V
Sbjct: 118 KIN-KEEKTITIKNVT---TNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVP 173
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 28.9 bits (65), Expect = 2.1
Identities = 17/163 (10%), Positives = 38/163 (23%), Gaps = 60/163 (36%)
Query: 120 VIGGGSGGISAAKEAASMNKK---VALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRA 176
V+GG G ++AA + V + + S+
Sbjct: 6 VLGGRFGALTAAYTLKRLVGSKADVKV---INKSRF------------------------ 38
Query: 177 SLLNEEATTSDNFGFHMKKSFTW----KTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
+ + + VD ++ + L + I +
Sbjct: 39 --------------SYFRPALPHVAIGVRDVDELKVDLSEA-------LPEKGIQFQEGT 77
Query: 233 AVFVD--KHRVKFAGEE---RTVSAQNFIIAVGGRPTYPDIPG 270
+D V + + I+ +G + G
Sbjct: 78 VEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG 120
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 28.7 bits (65), Expect = 2.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
++ VIGGG G++ A E A ++V + +
Sbjct: 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIE 35
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 28.6 bits (65), Expect = 2.3
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 225 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL-----LRTL 277
+D K + V + EE+T + I+ G +PT P IPG +
Sbjct: 83 NVD-PETKTIKV---KDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNY 136
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 28.7 bits (63), Expect = 2.4
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 119 CVIGGGSGGISAAKEAAS-MNKKVALFD 145
CV GGG+G + + AAS +V +
Sbjct: 6 CVCGGGNGAHTLSGLAASRDGVEVRVLT 33
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 28.7 bits (64), Expect = 2.5
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALF 144
+ ++G G G+SAA A +V +
Sbjct: 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVL 62
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 28.6 bits (65), Expect = 2.6
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 225 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL-----LRTL 277
K+D K V+ + + + S +IA G RP P+ G L L+T+
Sbjct: 118 KVD-TEKKIVYAEHTK---TKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTI 171
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 28.6 bits (64), Expect = 2.7
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 120 VIGGGSGGISAAKEAASMNKK---VALFD 145
++G G+GG+ AA E V L
Sbjct: 9 ILGAGTGGMPAAYEMKEALGSGHEVTLIS 37
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 28.4 bits (64), Expect = 2.8
Identities = 19/86 (22%), Positives = 24/86 (27%), Gaps = 15/86 (17%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGT------VWGLGGTCVNVGCIP 169
D VIG G G S ++ + V L P H T GT
Sbjct: 10 ADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVR---- 65
Query: 170 KKLFHRAS---LLNEEATTSDNFGFH 192
L AS N A ++
Sbjct: 66 -AL-TAASRAFFDNPPAGFCEHPLLS 89
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 28.6 bits (62), Expect = 2.8
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 117 DLCVIGGGSGGISAA---KEAASMNKKVALFD 145
+ ++G G G A + S +A++D
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWD 34
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 28.6 bits (63), Expect = 2.8
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 84 KARFLLPTLE---CQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKK 140
A+ L L+ Q VY G+ + V+G G G+ AA E A + +
Sbjct: 67 SAKSLWAKLDKRASQPVYQQGQACT---------NTKCLVVGAGPCGLRAAVELALLGAR 117
Query: 141 VALFD 145
V L +
Sbjct: 118 VVLVE 122
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 28.6 bits (65), Expect = 3.0
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 10/68 (14%)
Query: 220 ELEKNKID-YFNAKAVFVDKHR----VKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL- 273
EL + KI N + V +D E++ S I+A G I G++
Sbjct: 67 ELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTE 126
Query: 274 ----LRTL 277
+ L
Sbjct: 127 KLLKYKFL 134
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 28.3 bits (62), Expect = 3.1
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 116 YDLCVIGGGSGGISAAKEAASMN-KKVALFD 145
D+ VIG G G+ AAK ++ + D
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVD 41
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 28.2 bits (64), Expect = 3.3
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 225 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL-----LRTL 277
I V V +GEER + II+ G P DIPG L +R
Sbjct: 81 AIQ-PKEHQVTVKDLV---SGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGR 134
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 28.3 bits (62), Expect = 3.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+ +IG G G++AA++ S V L +
Sbjct: 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 137
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 28.3 bits (64), Expect = 3.5
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 222 EKNKID-YFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL----- 273
E+ + + +D R+ E V ++ ++A G P + G
Sbjct: 71 EQLNARILTHTRVTGIDPGHQRIWIGEE--EVRYRDLVLAWGAEPIRVPVEGDAQDALYP 128
Query: 274 LRTL 277
+ L
Sbjct: 129 INDL 132
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 28.3 bits (64), Expect = 3.8
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 225 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL-----LRTL 277
ID A V + GE RT+ ++A+G + P + G L + L
Sbjct: 91 AID-RAAHTVEI---ENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNL 144
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 27.9 bits (63), Expect = 3.8
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+D+ ++G G AA +A K +
Sbjct: 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIG 45
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 28.0 bits (62), Expect = 4.4
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 116 YDLCVIGGGSGGISAAKE 133
+D+ VIGGG G++A ++
Sbjct: 40 WDVIVIGGGYCGLTATRD 57
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 27.9 bits (63), Expect = 4.5
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 225 KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSL 279
ID AK V V R G E S +++ G P P IPG T SL
Sbjct: 83 AID-RAAKLVTV---RRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSL 133
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 27.8 bits (61), Expect = 4.9
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
+ VIG G G++AA + V +F+
Sbjct: 14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFE 43
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 27.5 bits (62), Expect = 6.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 119 CVIGGGSGGISAAKEAASMNKKVALFD 145
V+G G +AA+ A + V + D
Sbjct: 13 LVLGLARSGEAAARLLAKLGAIVTVND 39
>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus}
SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*
Length = 208
Score = 26.9 bits (60), Expect = 6.2
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 18/103 (17%)
Query: 201 TLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVG 260
+ D KY R + YE E + + +K +N I +G
Sbjct: 93 GVRDLHVKYTRMIYMAYETEKDPYIKSILPGELAKFEKLLATRGNG------RNLI--LG 144
Query: 261 GRPTYPDIPGARLLRTLSLLSGVDP------PTLI-FLEHISA 296
+ +Y D L L + +DP P L F + +
Sbjct: 145 DKISYADY---ALFEELDVHQILDPHCLDKFPLLKVFHQRMKD 184
>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator
americanus}
Length = 206
Score = 26.9 bits (60), Expect = 7.5
Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 15/104 (14%)
Query: 201 TLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGE-ERTVSAQNFIIAV 259
D + + D K + R KF G + + V
Sbjct: 94 QYSDYRVEIKSFFYTVIGMR----EGDVEQLKKEVLLPARDKFFGFITKFLKKSPSGFLV 149
Query: 260 GGRPTYPDIPGARLLRTLSLLSGVDP------PTLI-FLEHISA 296
G T+ D+ + + + P P + +E I A
Sbjct: 150 GDSLTWVDL---LVSEHNATMLTFVPEFLEGYPEVKEHMEKIRA 190
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 26.8 bits (60), Expect = 8.2
Identities = 13/55 (23%), Positives = 18/55 (32%)
Query: 159 GGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNL 213
G G + + + S FG KS ++ T V KY R L
Sbjct: 293 AGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRAL 347
>3h1n_A Probable glutathione S-transferase; APC84167, bordetella
bronchisepti structural genomics, PSI-2, protein
structure initiative; 1.83A {Bordetella bronchiseptica
RB50}
Length = 252
Score = 26.8 bits (59), Expect = 9.0
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 9/84 (10%)
Query: 222 EKNKIDYFNAKAVFVDKHRVKFAGE-ERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSLL 280
E + A F + KF E+ + + GR +Y D+ ++ L
Sbjct: 139 EDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADLSLYHVVEGLLHA 198
Query: 281 SGVDPPTLI--------FLEHISA 296
TL+ ++
Sbjct: 199 FPRRMRTLVHRYPRLMALHARVAE 222
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 26.7 bits (59), Expect = 9.9
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 116 YDLCVIGGGSGGISAAKE-AASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCI 168
+D V+G G G++AA V + D G G G + ++
Sbjct: 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVD------AGHAPGSGDSGRSMAAF 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,699,802
Number of extensions: 286932
Number of successful extensions: 1169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1082
Number of HSP's successfully gapped: 223
Length of query: 296
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 203
Effective length of database: 4,105,140
Effective search space: 833343420
Effective search space used: 833343420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)