Query psy7666
Match_columns 350
No_of_seqs 157 out of 1366
Neff 8.1
Searched_HMMs 46136
Date Sat Aug 17 00:18:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1276|consensus 100.0 4.1E-33 9E-38 262.4 18.9 258 83-342 20-287 (491)
2 COG1232 HemY Protoporphyrinoge 100.0 1.4E-31 3E-36 260.9 20.8 241 82-349 8-256 (444)
3 PRK12416 protoporphyrinogen ox 100.0 1.5E-29 3.2E-34 252.3 26.0 242 82-349 9-268 (463)
4 TIGR00562 proto_IX_ox protopor 100.0 2.5E-29 5.5E-34 250.3 25.3 250 82-349 10-267 (462)
5 PLN02576 protoporphyrinogen ox 100.0 5E-28 1.1E-32 243.3 26.0 248 82-343 20-276 (496)
6 PRK11883 protoporphyrinogen ox 100.0 1E-26 2.2E-31 230.5 25.3 243 82-349 8-263 (451)
7 PRK07208 hypothetical protein; 99.9 4.4E-24 9.5E-29 213.8 21.5 232 82-337 12-250 (479)
8 PRK07233 hypothetical protein; 99.9 3.4E-23 7.4E-28 204.1 22.5 227 82-349 7-242 (434)
9 PLN02612 phytoene desaturase 99.9 4.6E-21 9.9E-26 195.4 24.8 231 79-349 94-354 (567)
10 COG2907 Predicted NAD/FAD-bind 99.9 1.8E-21 3.8E-26 179.7 19.3 229 79-347 9-259 (447)
11 TIGR03467 HpnE squalene-associ 99.9 2E-21 4.4E-26 190.3 20.3 218 92-349 8-242 (419)
12 PLN02487 zeta-carotene desatur 99.9 8.2E-21 1.8E-25 192.3 22.8 216 79-335 76-325 (569)
13 TIGR02731 phytoene_desat phyto 99.9 2.2E-20 4.7E-25 185.9 22.7 223 82-346 7-256 (453)
14 PLN02268 probable polyamine ox 99.9 2E-21 4.3E-26 192.3 14.8 209 82-349 8-240 (435)
15 TIGR02732 zeta_caro_desat caro 99.9 1.6E-20 3.5E-25 187.7 20.9 213 82-335 7-249 (474)
16 PLN02568 polyamine oxidase 99.8 9.2E-20 2E-24 184.3 20.8 239 83-349 14-284 (539)
17 TIGR02734 crtI_fam phytoene de 99.8 2E-17 4.4E-22 166.7 20.7 220 82-349 6-264 (502)
18 PLN02328 lysine-specific histo 99.7 1E-16 2.3E-21 166.7 20.0 244 53-349 212-475 (808)
19 PLN02529 lysine-specific histo 99.7 1.9E-16 4E-21 164.1 21.5 238 54-349 138-395 (738)
20 TIGR02733 desat_CrtD C-3',4' d 99.7 2.4E-16 5.1E-21 158.6 21.4 212 82-337 9-264 (492)
21 COG1233 Phytoene dehydrogenase 99.7 5.4E-16 1.2E-20 155.6 18.7 218 83-347 12-267 (487)
22 KOG0685|consensus 99.7 4.1E-16 8.9E-21 150.0 15.6 230 82-350 29-275 (498)
23 PLN03000 amine oxidase 99.7 1.1E-15 2.3E-20 159.4 18.4 244 53-344 161-415 (881)
24 PLN02676 polyamine oxidase 99.7 1.8E-15 3.9E-20 151.7 17.0 219 83-349 35-274 (487)
25 PF01593 Amino_oxidase: Flavin 99.6 2.2E-16 4.9E-21 153.5 8.1 63 84-150 1-68 (450)
26 COG1231 Monoamine oxidase [Ami 99.6 1.8E-15 3.9E-20 145.6 12.1 222 83-348 16-249 (450)
27 PTZ00363 rab-GDP dissociation 99.6 4.2E-14 9.2E-19 139.7 21.8 225 85-349 15-278 (443)
28 TIGR02730 carot_isom carotene 99.6 5.3E-14 1.2E-18 141.6 20.8 225 82-349 8-274 (493)
29 KOG0029|consensus 99.6 2.2E-14 4.7E-19 143.4 15.2 70 79-150 16-92 (501)
30 COG3349 Uncharacterized conser 99.5 2.3E-14 4.9E-19 140.3 10.8 214 82-335 8-245 (485)
31 PLN02976 amine oxidase 99.5 5.2E-13 1.1E-17 143.5 17.8 257 58-350 678-986 (1713)
32 TIGR00031 UDP-GALP_mutase UDP- 99.5 5.6E-13 1.2E-17 129.0 16.1 215 82-340 9-230 (377)
33 PRK13977 myosin-cross-reactive 99.5 1.3E-12 2.7E-17 131.3 18.7 210 79-334 23-255 (576)
34 PF13450 NAD_binding_8: NAD(P) 99.2 1.1E-11 2.4E-16 90.6 5.4 62 82-145 4-68 (68)
35 COG0562 Glf UDP-galactopyranos 99.1 1.5E-09 3.2E-14 100.4 12.3 211 82-335 9-225 (374)
36 PF00996 GDI: GDP dissociation 98.6 7E-06 1.5E-10 80.9 21.5 221 87-349 19-277 (438)
37 COG3380 Predicted NAD/FAD-depe 98.5 1.1E-07 2.3E-12 86.4 4.7 61 82-146 9-72 (331)
38 PF06100 Strep_67kDa_ant: Stre 98.2 1.8E-05 3.9E-10 78.1 12.8 208 82-334 10-236 (500)
39 KOG4254|consensus 98.1 6.1E-05 1.3E-09 73.1 13.6 55 295-349 253-309 (561)
40 KOG1439|consensus 97.9 0.00012 2.5E-09 70.2 12.0 222 88-348 20-275 (440)
41 COG5044 MRS6 RAB proteins gera 97.1 0.016 3.4E-07 55.4 14.2 210 85-336 19-260 (434)
42 COG4716 Myosin-crossreactive a 97.0 0.009 2E-07 57.2 11.6 210 82-335 30-257 (587)
43 KOG0399|consensus 96.4 0.0028 6E-08 67.8 3.5 35 78-112 1785-1826(2142)
44 PLN02172 flavin-containing mon 96.3 0.0036 7.7E-08 62.8 3.7 34 79-112 11-51 (461)
45 PRK12779 putative bifunctional 96.1 0.004 8.7E-08 67.6 3.3 34 78-111 306-346 (944)
46 PLN02852 ferredoxin-NADP+ redu 95.9 0.0084 1.8E-07 60.4 4.6 34 79-112 27-69 (491)
47 KOG1399|consensus 95.9 0.0066 1.4E-07 60.4 3.5 35 79-113 7-48 (448)
48 PF07156 Prenylcys_lyase: Pren 95.8 0.022 4.7E-07 55.4 6.8 94 210-344 69-167 (368)
49 COG0493 GltD NADPH-dependent g 95.8 0.0078 1.7E-07 60.1 3.5 35 78-112 123-164 (457)
50 PF00743 FMO-like: Flavin-bind 95.7 0.0069 1.5E-07 61.8 2.7 33 79-111 2-41 (531)
51 TIGR03315 Se_ygfK putative sel 95.0 0.02 4.4E-07 62.3 3.7 35 79-113 538-579 (1012)
52 PTZ00188 adrenodoxin reductase 95.0 0.024 5.2E-07 56.9 4.0 36 78-113 39-82 (506)
53 PRK12831 putative oxidoreducta 94.9 0.025 5.4E-07 56.8 3.9 35 77-111 139-180 (464)
54 PRK09853 putative selenate red 94.4 0.032 6.9E-07 60.6 3.4 35 78-112 539-580 (1019)
55 PRK12775 putative trifunctiona 94.3 0.037 7.9E-07 60.8 3.7 34 79-112 431-471 (1006)
56 COG1635 THI4 Ribulose 1,5-bisp 94.3 0.028 6.1E-07 50.2 2.2 53 85-149 41-96 (262)
57 PRK07364 2-octaprenyl-6-methox 94.2 0.089 1.9E-06 51.6 5.8 53 82-152 26-82 (415)
58 PRK12769 putative oxidoreducta 94.1 0.046 9.9E-07 57.3 3.8 34 79-112 328-368 (654)
59 PLN02661 Putative thiazole syn 94.0 0.086 1.9E-06 50.8 5.2 54 83-148 101-158 (357)
60 PRK12809 putative oxidoreducta 94.0 0.051 1.1E-06 56.8 3.9 33 79-111 311-350 (639)
61 COG2081 Predicted flavoprotein 94.0 0.12 2.7E-06 50.1 6.1 52 298-349 103-155 (408)
62 TIGR01316 gltA glutamate synth 93.8 0.063 1.4E-06 53.6 4.1 33 79-111 134-173 (449)
63 PF01946 Thi4: Thi4 family; PD 93.8 0.026 5.7E-07 50.4 1.1 53 85-149 28-83 (230)
64 PRK12810 gltD glutamate syntha 93.7 0.067 1.4E-06 53.8 4.0 33 79-111 144-183 (471)
65 PRK12814 putative NADPH-depend 93.6 0.068 1.5E-06 56.0 4.1 33 79-111 194-233 (652)
66 PF00070 Pyr_redox: Pyridine n 93.6 0.17 3.6E-06 37.6 5.1 38 308-345 42-80 (80)
67 PRK12778 putative bifunctional 93.6 0.066 1.4E-06 57.0 3.9 33 79-111 432-471 (752)
68 COG2072 TrkA Predicted flavopr 93.4 0.077 1.7E-06 53.0 3.8 43 79-122 9-59 (443)
69 PF01266 DAO: FAD dependent ox 93.1 0.17 3.8E-06 47.7 5.7 50 297-346 135-189 (358)
70 PF13738 Pyr_redox_3: Pyridine 92.9 0.075 1.6E-06 46.4 2.6 33 82-114 5-41 (203)
71 PRK08132 FAD-dependent oxidore 92.9 0.2 4.3E-06 51.3 6.1 50 82-152 31-85 (547)
72 PRK06567 putative bifunctional 92.8 0.086 1.9E-06 57.0 3.3 34 76-109 381-421 (1028)
73 PRK11749 dihydropyrimidine deh 92.8 0.098 2.1E-06 52.3 3.6 33 79-111 141-180 (457)
74 COG1148 HdrA Heterodisulfide r 92.8 0.07 1.5E-06 52.9 2.4 32 83-114 133-167 (622)
75 TIGR01318 gltD_gamma_fam gluta 92.8 0.1 2.3E-06 52.4 3.8 33 79-111 142-181 (467)
76 TIGR03219 salicylate_mono sali 92.8 0.14 3E-06 50.4 4.5 50 82-150 8-61 (414)
77 PRK08243 4-hydroxybenzoate 3-m 92.7 0.31 6.7E-06 47.5 6.9 53 82-153 10-67 (392)
78 TIGR00292 thiazole biosynthesi 92.4 0.098 2.1E-06 48.2 2.8 27 84-110 31-60 (254)
79 PRK04176 ribulose-1,5-biphosph 92.4 0.097 2.1E-06 48.3 2.7 53 84-148 35-90 (257)
80 PRK06184 hypothetical protein; 92.0 0.18 3.9E-06 51.0 4.3 52 82-152 11-65 (502)
81 PRK08163 salicylate hydroxylas 91.9 0.21 4.6E-06 48.6 4.6 50 83-151 13-65 (396)
82 PRK06115 dihydrolipoamide dehy 91.8 0.11 2.4E-06 52.1 2.5 34 308-341 217-251 (466)
83 TIGR01292 TRX_reduct thioredox 91.8 0.15 3.1E-06 47.3 3.2 29 84-113 10-41 (300)
84 TIGR01988 Ubi-OHases Ubiquinon 91.7 0.2 4.4E-06 48.2 4.2 57 82-152 7-66 (385)
85 KOG2415|consensus 91.6 0.18 3.9E-06 49.2 3.5 76 34-112 22-123 (621)
86 PF03486 HI0933_like: HI0933-l 91.5 0.12 2.6E-06 51.0 2.3 65 84-149 10-93 (409)
87 PRK05249 soluble pyridine nucl 91.4 0.13 2.7E-06 51.5 2.5 43 307-349 217-260 (461)
88 TIGR01317 GOGAT_sm_gam glutama 91.4 0.19 4.2E-06 50.7 3.8 33 79-111 144-183 (485)
89 PF12831 FAD_oxidored: FAD dep 91.4 0.14 3.1E-06 50.8 2.8 29 83-111 8-39 (428)
90 TIGR01813 flavo_cyto_c flavocy 91.2 0.15 3.2E-06 50.7 2.8 29 82-110 7-39 (439)
91 TIGR01424 gluta_reduc_2 glutat 91.0 0.16 3.6E-06 50.5 2.8 43 307-349 208-251 (446)
92 TIGR01350 lipoamide_DH dihydro 90.8 0.19 4E-06 50.2 3.1 39 307-345 212-251 (461)
93 PF00890 FAD_binding_2: FAD bi 90.8 0.14 3.1E-06 50.3 2.1 45 304-348 139-188 (417)
94 COG0644 FixC Dehydrogenases (f 90.7 0.17 3.8E-06 49.5 2.7 30 83-112 12-44 (396)
95 PRK07121 hypothetical protein; 90.6 0.28 6E-06 49.6 4.0 27 84-110 30-59 (492)
96 PLN02985 squalene monooxygenas 90.6 0.85 1.8E-05 46.5 7.6 52 82-152 51-105 (514)
97 COG0579 Predicted dehydrogenas 90.5 0.59 1.3E-05 46.3 6.1 43 305-347 152-196 (429)
98 TIGR01372 soxA sarcosine oxida 90.3 0.22 4.7E-06 54.8 3.2 34 79-112 164-204 (985)
99 PRK06481 fumarate reductase fl 90.1 0.22 4.7E-06 50.6 2.9 27 84-110 71-100 (506)
100 PRK12770 putative glutamate sy 90.1 0.36 7.7E-06 46.5 4.2 34 79-112 19-59 (352)
101 TIGR00275 flavoprotein, HI0933 90.0 0.25 5.3E-06 48.6 3.1 29 82-110 5-36 (400)
102 PRK06753 hypothetical protein; 90.0 0.23 5E-06 47.9 2.8 25 82-106 8-35 (373)
103 TIGR02360 pbenz_hydroxyl 4-hyd 89.9 0.43 9.4E-06 46.6 4.7 54 82-152 10-66 (390)
104 PRK05868 hypothetical protein; 89.9 0.54 1.2E-05 45.7 5.3 51 82-151 9-62 (372)
105 PRK12771 putative glutamate sy 89.8 0.34 7.3E-06 49.9 4.0 33 79-111 138-177 (564)
106 PRK08849 2-octaprenyl-3-methyl 89.8 0.59 1.3E-05 45.4 5.5 57 82-151 11-70 (384)
107 COG3380 Predicted NAD/FAD-depe 89.7 0.21 4.6E-06 46.1 2.2 47 299-349 101-147 (331)
108 PRK08013 oxidoreductase; Provi 89.7 0.52 1.1E-05 46.2 5.1 58 82-152 11-71 (400)
109 PRK07251 pyridine nucleotide-d 89.6 0.24 5.2E-06 49.2 2.6 32 80-111 5-44 (438)
110 PRK12834 putative FAD-binding 89.2 0.3 6.4E-06 50.2 3.0 29 83-111 13-46 (549)
111 PRK13984 putative oxidoreducta 89.2 0.37 8.1E-06 50.0 3.8 33 79-111 284-323 (604)
112 PRK12409 D-amino acid dehydrog 89.2 0.31 6.6E-06 47.8 3.0 46 298-343 186-235 (410)
113 PRK08850 2-octaprenyl-6-methox 88.9 0.58 1.3E-05 45.8 4.8 56 82-152 12-71 (405)
114 PRK10262 thioredoxin reductase 88.9 0.37 8.1E-06 45.6 3.3 34 79-113 7-47 (321)
115 TIGR03143 AhpF_homolog putativ 88.7 0.36 7.7E-06 49.6 3.3 33 80-113 6-45 (555)
116 PRK08274 tricarballylate dehyd 88.7 0.37 8E-06 48.2 3.3 27 83-109 13-44 (466)
117 PF01266 DAO: FAD dependent ox 88.6 0.31 6.8E-06 45.9 2.6 26 82-108 7-35 (358)
118 PF01494 FAD_binding_3: FAD bi 88.6 0.31 6.7E-06 45.9 2.6 52 82-152 9-63 (356)
119 PRK06416 dihydrolipoamide dehy 88.6 0.32 6.9E-06 48.6 2.7 39 307-345 214-253 (462)
120 TIGR01421 gluta_reduc_1 glutat 88.2 0.33 7.2E-06 48.5 2.5 38 308-345 209-248 (450)
121 PRK12845 3-ketosteroid-delta-1 88.1 0.36 7.8E-06 49.7 2.8 37 300-337 212-249 (564)
122 PRK06834 hypothetical protein; 88.0 0.67 1.5E-05 46.9 4.7 24 82-105 11-37 (488)
123 PRK07236 hypothetical protein; 88.0 0.5 1.1E-05 45.9 3.6 24 82-105 14-40 (386)
124 PRK12842 putative succinate de 87.9 0.37 7.9E-06 49.8 2.7 32 306-337 214-246 (574)
125 PRK08244 hypothetical protein; 87.9 0.53 1.2E-05 47.5 3.9 24 82-105 10-36 (493)
126 PRK06183 mhpA 3-(3-hydroxyphen 87.8 1 2.2E-05 46.1 5.8 51 83-152 19-72 (538)
127 PRK06467 dihydrolipoamide dehy 87.8 0.4 8.7E-06 48.2 2.8 32 80-111 6-44 (471)
128 TIGR03197 MnmC_Cterm tRNA U-34 87.8 1.6 3.4E-05 42.3 7.0 52 298-349 124-178 (381)
129 PRK12839 hypothetical protein; 87.7 0.49 1.1E-05 48.8 3.5 41 306-346 214-259 (572)
130 PRK10157 putative oxidoreducta 87.5 0.51 1.1E-05 46.8 3.4 25 83-107 14-41 (428)
131 PRK07818 dihydrolipoamide dehy 87.5 0.43 9.2E-06 47.8 2.8 40 307-346 214-256 (466)
132 PRK06475 salicylate hydroxylas 87.4 0.44 9.6E-06 46.6 2.8 52 82-152 10-64 (400)
133 PRK07588 hypothetical protein; 87.3 0.44 9.6E-06 46.3 2.8 24 82-105 8-34 (391)
134 PRK07538 hypothetical protein; 87.2 0.46 9.9E-06 46.7 2.9 25 82-106 8-35 (413)
135 KOG2614|consensus 87.2 0.4 8.7E-06 46.7 2.4 24 82-105 10-36 (420)
136 PRK06116 glutathione reductase 87.2 0.35 7.6E-06 48.2 2.0 43 307-349 209-253 (450)
137 PRK06847 hypothetical protein; 86.8 0.52 1.1E-05 45.4 2.9 22 84-105 14-38 (375)
138 PRK05976 dihydrolipoamide dehy 86.8 0.48 1E-05 47.6 2.8 33 80-113 6-45 (472)
139 PRK06126 hypothetical protein; 86.8 0.63 1.4E-05 47.6 3.7 52 82-152 15-69 (545)
140 PRK09126 hypothetical protein; 86.7 0.58 1.3E-05 45.4 3.2 24 82-105 11-37 (392)
141 PRK07045 putative monooxygenas 86.4 0.52 1.1E-05 45.8 2.7 24 83-106 14-40 (388)
142 PRK07333 2-octaprenyl-6-methox 86.3 0.93 2E-05 44.1 4.4 54 82-152 9-67 (403)
143 PRK12835 3-ketosteroid-delta-1 86.2 0.54 1.2E-05 48.7 2.8 32 305-336 212-244 (584)
144 PRK08010 pyridine nucleotide-d 86.1 0.61 1.3E-05 46.3 3.1 40 307-346 200-240 (441)
145 PRK14727 putative mercuric red 86.1 0.51 1.1E-05 47.6 2.5 40 307-346 229-269 (479)
146 TIGR02032 GG-red-SF geranylger 85.9 0.56 1.2E-05 43.1 2.6 27 82-108 8-37 (295)
147 COG2081 Predicted flavoprotein 85.8 0.63 1.4E-05 45.3 2.9 32 80-111 5-43 (408)
148 PRK06292 dihydrolipoamide dehy 85.8 0.55 1.2E-05 46.9 2.6 30 81-111 6-42 (460)
149 PRK06175 L-aspartate oxidase; 85.6 0.62 1.3E-05 46.3 2.8 27 83-109 13-41 (433)
150 TIGR01790 carotene-cycl lycope 85.5 0.6 1.3E-05 45.3 2.6 28 82-109 7-37 (388)
151 PRK12837 3-ketosteroid-delta-1 85.4 0.76 1.6E-05 46.8 3.4 28 82-110 15-45 (513)
152 PRK10015 oxidoreductase; Provi 84.8 0.67 1.5E-05 46.0 2.7 24 83-106 14-40 (429)
153 PRK07803 sdhA succinate dehydr 84.8 0.95 2.1E-05 47.3 3.9 40 83-124 17-59 (626)
154 PF13738 Pyr_redox_3: Pyridine 84.6 1.6 3.4E-05 37.9 4.7 43 305-349 84-126 (203)
155 PRK12844 3-ketosteroid-delta-1 84.6 0.74 1.6E-05 47.4 2.9 32 306-337 208-240 (557)
156 PRK06370 mercuric reductase; V 84.5 0.71 1.5E-05 46.2 2.7 34 308-341 214-248 (463)
157 PRK00711 D-amino acid dehydrog 84.3 0.77 1.7E-05 45.0 2.8 41 305-345 200-242 (416)
158 PRK08773 2-octaprenyl-3-methyl 84.3 0.92 2E-05 44.1 3.4 24 82-105 14-40 (392)
159 PRK07395 L-aspartate oxidase; 84.2 1 2.3E-05 46.3 3.8 28 82-109 17-46 (553)
160 PF03486 HI0933_like: HI0933-l 84.2 2.3 5.1E-05 42.0 6.1 51 298-348 100-153 (409)
161 PRK06617 2-octaprenyl-6-methox 84.2 1.3 2.9E-05 42.9 4.4 23 82-104 9-34 (374)
162 PRK08641 sdhA succinate dehydr 84.1 0.94 2E-05 46.9 3.5 26 83-108 12-40 (589)
163 PRK05714 2-octaprenyl-3-methyl 83.9 0.78 1.7E-05 44.9 2.6 59 82-151 10-71 (405)
164 PRK07608 ubiquinone biosynthes 83.9 0.92 2E-05 43.9 3.2 25 82-106 13-40 (388)
165 PRK11728 hydroxyglutarate oxid 83.8 0.71 1.5E-05 45.0 2.3 42 305-346 148-190 (393)
166 TIGR02053 MerA mercuric reduct 83.7 0.81 1.8E-05 45.7 2.8 35 308-342 209-244 (463)
167 TIGR02028 ChlP geranylgeranyl 83.7 0.9 2E-05 44.6 3.0 23 85-107 11-36 (398)
168 PTZ00306 NADH-dependent fumara 83.4 0.79 1.7E-05 51.4 2.8 26 85-110 420-448 (1167)
169 PTZ00367 squalene epoxidase; P 83.4 1.6 3.4E-05 45.1 4.7 53 82-152 41-96 (567)
170 PRK07494 2-octaprenyl-6-methox 83.4 1.1 2.4E-05 43.4 3.5 25 82-106 15-42 (388)
171 PRK07588 hypothetical protein; 82.9 2.8 6E-05 40.7 6.1 43 307-349 104-146 (391)
172 TIGR01377 soxA_mon sarcosine o 82.7 0.84 1.8E-05 44.0 2.3 39 307-345 146-185 (380)
173 PRK06912 acoL dihydrolipoamide 82.7 0.96 2.1E-05 45.2 2.8 36 307-342 212-248 (458)
174 PRK11259 solA N-methyltryptoph 82.6 1 2.2E-05 43.3 2.9 40 307-346 150-190 (376)
175 PRK07843 3-ketosteroid-delta-1 82.1 1 2.2E-05 46.3 2.8 33 306-338 208-241 (557)
176 PRK13748 putative mercuric red 82.1 0.89 1.9E-05 46.6 2.3 39 307-345 311-350 (561)
177 TIGR01984 UbiH 2-polyprenyl-6- 82.1 0.96 2.1E-05 43.7 2.5 24 82-105 7-34 (382)
178 TIGR03140 AhpF alkyl hydropero 82.1 1.2 2.5E-05 45.4 3.2 32 79-112 213-251 (515)
179 PLN02927 antheraxanthin epoxid 81.9 1.3 2.9E-05 46.4 3.6 22 83-104 90-114 (668)
180 PRK14694 putative mercuric red 81.5 1.4 3E-05 44.2 3.5 39 307-345 219-258 (468)
181 PRK06134 putative FAD-binding 81.4 1.1 2.4E-05 46.4 2.7 32 306-337 217-249 (581)
182 PRK01747 mnmC bifunctional tRN 81.3 1.3 2.9E-05 46.5 3.3 51 298-348 397-450 (662)
183 PRK08294 phenol 2-monooxygenas 81.1 2.3 5E-05 44.5 5.0 50 82-152 40-95 (634)
184 PRK08773 2-octaprenyl-3-methyl 81.0 3.7 8E-05 39.9 6.2 44 306-349 113-157 (392)
185 PRK07236 hypothetical protein; 81.0 3.7 8.1E-05 39.8 6.2 45 304-349 98-142 (386)
186 PRK07333 2-octaprenyl-6-methox 80.9 3.7 8E-05 39.9 6.1 44 306-349 111-155 (403)
187 PRK07804 L-aspartate oxidase; 80.9 1.2 2.6E-05 45.7 2.7 26 83-108 25-53 (541)
188 PLN00093 geranylgeranyl diphos 80.8 2 4.4E-05 42.9 4.3 26 79-104 40-72 (450)
189 PRK05732 2-octaprenyl-6-methox 80.7 1.3 2.7E-05 43.0 2.7 22 82-103 11-38 (395)
190 TIGR01812 sdhA_frdA_Gneg succi 80.6 1.2 2.7E-05 45.8 2.8 28 82-109 7-37 (566)
191 COG0665 DadA Glycine/D-amino a 80.6 1.2 2.7E-05 42.8 2.7 41 306-346 156-198 (387)
192 PRK06327 dihydrolipoamide dehy 80.6 1.3 2.8E-05 44.6 2.8 39 306-344 224-263 (475)
193 PRK05714 2-octaprenyl-3-methyl 80.5 3.8 8.3E-05 40.0 6.1 44 306-349 112-156 (405)
194 PRK11728 hydroxyglutarate oxid 80.5 4.3 9.4E-05 39.5 6.5 31 82-112 10-45 (393)
195 PRK06452 sdhA succinate dehydr 80.4 1.3 2.7E-05 45.8 2.8 26 83-108 14-42 (566)
196 PTZ00052 thioredoxin reductase 80.3 1.2 2.7E-05 45.0 2.7 41 308-348 224-265 (499)
197 TIGR03364 HpnW_proposed FAD de 80.2 1.4 2.9E-05 42.4 2.8 24 82-105 8-34 (365)
198 TIGR02485 CobZ_N-term precorri 80.1 1.4 3E-05 43.6 2.9 29 82-110 4-37 (432)
199 PRK12843 putative FAD-binding 79.9 1.3 2.9E-05 45.7 2.8 32 306-337 221-253 (578)
200 PRK07845 flavoprotein disulfid 79.9 1.4 3E-05 44.3 2.8 42 308-349 220-262 (466)
201 PRK06847 hypothetical protein; 79.7 4.3 9.2E-05 39.0 6.1 43 307-349 108-151 (375)
202 PF06039 Mqo: Malate:quinone o 79.6 2.9 6.4E-05 41.7 4.8 39 305-343 180-221 (488)
203 TIGR01811 sdhA_Bsu succinate d 79.4 1.3 2.8E-05 46.1 2.5 26 82-107 6-34 (603)
204 PRK05868 hypothetical protein; 79.3 4.6 9.9E-05 39.2 6.1 42 308-349 107-148 (372)
205 PTZ00058 glutathione reductase 78.8 1.9 4.1E-05 44.4 3.4 39 307-345 279-319 (561)
206 PRK08958 sdhA succinate dehydr 78.7 1.6 3.4E-05 45.3 2.8 27 82-108 15-44 (588)
207 COG0654 UbiH 2-polyprenyl-6-me 78.6 1.4 3E-05 43.0 2.3 21 83-103 11-34 (387)
208 TIGR01984 UbiH 2-polyprenyl-6- 78.3 4.9 0.00011 38.7 6.0 44 306-349 105-150 (382)
209 TIGR02352 thiamin_ThiO glycine 78.2 6.4 0.00014 36.9 6.7 48 298-345 126-178 (337)
210 PRK08255 salicylyl-CoA 5-hydro 77.9 1.8 3.9E-05 46.4 3.1 24 82-105 8-36 (765)
211 PRK15317 alkyl hydroperoxide r 77.9 2.2 4.7E-05 43.4 3.6 32 79-112 212-250 (517)
212 PLN02815 L-aspartate oxidase 77.8 2.6 5.6E-05 43.8 4.1 25 83-108 38-65 (594)
213 TIGR02023 BchP-ChlP geranylger 77.5 1.8 3.9E-05 42.2 2.7 22 82-103 8-32 (388)
214 PRK07573 sdhA succinate dehydr 77.4 1.8 3.9E-05 45.4 2.8 25 83-107 44-71 (640)
215 TIGR01988 Ubi-OHases Ubiquinon 77.4 5.3 0.00011 38.3 6.0 44 306-349 106-151 (385)
216 PRK07057 sdhA succinate dehydr 77.2 1.8 3.9E-05 44.9 2.7 26 83-108 21-49 (591)
217 TIGR03219 salicylate_mono sali 76.8 5.2 0.00011 39.2 5.8 43 306-349 105-147 (414)
218 TIGR00137 gid_trmFO tRNA:m(5)U 76.8 1.8 4E-05 43.0 2.5 27 83-109 9-38 (433)
219 PRK07190 hypothetical protein; 76.3 2.8 6.1E-05 42.4 3.8 29 83-111 14-47 (487)
220 PTZ00139 Succinate dehydrogena 76.3 2 4.3E-05 44.8 2.8 37 84-122 39-78 (617)
221 PLN00128 Succinate dehydrogena 76.0 2.1 4.5E-05 44.9 2.8 26 83-108 59-87 (635)
222 TIGR01789 lycopene_cycl lycope 76.0 2.1 4.5E-05 41.7 2.7 32 82-113 7-44 (370)
223 COG0446 HcaD Uncharacterized N 76.0 2 4.2E-05 41.5 2.5 33 79-111 137-176 (415)
224 TIGR01373 soxB sarcosine oxida 76.0 2.9 6.3E-05 40.8 3.7 40 307-346 184-226 (407)
225 PRK06753 hypothetical protein; 75.7 6.5 0.00014 37.7 6.1 43 306-349 98-140 (373)
226 PRK09897 hypothetical protein; 75.6 2.5 5.5E-05 43.2 3.3 35 79-113 2-46 (534)
227 TIGR03329 Phn_aa_oxid putative 75.5 2 4.2E-05 43.0 2.4 40 306-346 183-223 (460)
228 PLN02507 glutathione reductase 75.2 2.3 4.9E-05 43.2 2.8 42 308-349 246-288 (499)
229 PRK12266 glpD glycerol-3-phosp 75.2 2.2 4.8E-05 43.4 2.7 38 306-343 155-193 (508)
230 PRK08849 2-octaprenyl-3-methyl 75.1 5.9 0.00013 38.4 5.6 42 308-349 112-155 (384)
231 PRK06263 sdhA succinate dehydr 74.9 3 6.6E-05 42.7 3.7 27 83-109 16-45 (543)
232 PRK08020 ubiF 2-octaprenyl-3-m 74.8 2 4.3E-05 41.6 2.2 24 82-105 13-39 (391)
233 COG0654 UbiH 2-polyprenyl-6-me 74.6 7.2 0.00016 38.0 6.1 46 304-349 102-150 (387)
234 PRK08071 L-aspartate oxidase; 74.6 2.4 5.1E-05 43.2 2.8 28 82-109 11-40 (510)
235 COG0492 TrxB Thioredoxin reduc 74.3 2.7 5.9E-05 39.8 2.9 35 80-114 5-46 (305)
236 PRK09126 hypothetical protein; 74.2 7.2 0.00016 37.7 6.0 43 307-349 111-155 (392)
237 PRK06185 hypothetical protein; 74.1 2.7 5.8E-05 41.0 3.0 23 83-105 15-40 (407)
238 PRK08013 oxidoreductase; Provi 74.0 6.9 0.00015 38.2 5.8 43 307-349 112-156 (400)
239 PRK05335 tRNA (uracil-5-)-meth 73.9 2.6 5.7E-05 41.8 2.8 24 84-107 12-38 (436)
240 PRK11101 glpA sn-glycerol-3-ph 73.7 2.9 6.4E-05 42.9 3.2 24 82-105 14-40 (546)
241 PRK08401 L-aspartate oxidase; 73.7 2.6 5.7E-05 42.3 2.8 23 83-105 10-35 (466)
242 TIGR01377 soxA_mon sarcosine o 73.0 8.2 0.00018 37.1 6.0 28 82-109 8-38 (380)
243 PRK06834 hypothetical protein; 72.9 8 0.00017 39.1 6.1 42 308-349 102-144 (488)
244 PRK09078 sdhA succinate dehydr 72.5 2.8 6.1E-05 43.5 2.8 26 83-108 21-49 (598)
245 TIGR03862 flavo_PP4765 unchara 72.1 9.7 0.00021 37.2 6.2 45 298-344 77-123 (376)
246 PRK11445 putative oxidoreducta 71.7 3.1 6.7E-05 39.9 2.7 24 82-106 9-35 (351)
247 PRK13369 glycerol-3-phosphate 71.3 3.9 8.4E-05 41.5 3.4 26 83-108 15-43 (502)
248 PLN02463 lycopene beta cyclase 70.9 4.6 0.0001 40.4 3.8 22 84-105 38-62 (447)
249 PRK01747 mnmC bifunctional tRN 70.7 12 0.00027 39.3 7.1 31 82-112 268-301 (662)
250 PRK09231 fumarate reductase fl 70.6 2.9 6.2E-05 43.3 2.3 28 82-109 12-44 (582)
251 PLN02546 glutathione reductase 70.5 3.1 6.8E-05 42.8 2.6 39 308-346 295-335 (558)
252 TIGR01320 mal_quin_oxido malat 70.4 2.9 6.3E-05 42.2 2.3 44 298-341 167-215 (483)
253 PRK06069 sdhA succinate dehydr 70.4 3.2 6.8E-05 42.9 2.6 27 83-109 14-46 (577)
254 PRK08626 fumarate reductase fl 70.3 3.4 7.4E-05 43.4 2.8 27 82-108 13-42 (657)
255 PRK08850 2-octaprenyl-6-methox 70.2 10 0.00022 37.1 6.0 43 307-349 112-156 (405)
256 TIGR00551 nadB L-aspartate oxi 70.0 3.5 7.5E-05 41.7 2.7 27 82-109 10-39 (488)
257 PRK12409 D-amino acid dehydrog 70.0 12 0.00027 36.4 6.6 28 83-110 10-40 (410)
258 TIGR01423 trypano_reduc trypan 69.6 3.3 7.2E-05 41.9 2.5 43 306-348 231-275 (486)
259 PRK05945 sdhA succinate dehydr 69.5 3.9 8.4E-05 42.3 3.0 27 82-108 11-42 (575)
260 PRK06854 adenylylsulfate reduc 69.0 3.6 7.7E-05 42.9 2.6 25 83-107 20-49 (608)
261 PRK07190 hypothetical protein; 68.8 12 0.00025 37.9 6.2 42 308-349 111-153 (487)
262 PRK08020 ubiF 2-octaprenyl-3-m 68.4 12 0.00025 36.3 6.0 43 307-349 113-157 (391)
263 PRK08163 salicylate hydroxylas 68.3 11 0.00023 36.6 5.7 42 308-349 111-154 (396)
264 TIGR01176 fum_red_Fp fumarate 68.3 3.4 7.3E-05 42.8 2.3 29 82-110 11-44 (580)
265 PRK07512 L-aspartate oxidase; 68.1 4.1 8.9E-05 41.5 2.8 26 83-108 18-45 (513)
266 TIGR01989 COQ6 Ubiquinone bios 68.1 3.8 8.2E-05 40.6 2.5 24 82-105 8-38 (437)
267 PRK08275 putative oxidoreducta 67.9 3.3 7.2E-05 42.6 2.1 24 83-106 18-46 (554)
268 PRK05192 tRNA uridine 5-carbox 67.7 4.1 8.9E-05 42.3 2.7 25 85-109 15-43 (618)
269 PRK05732 2-octaprenyl-6-methox 67.5 13 0.00028 35.9 6.1 42 308-349 114-157 (395)
270 PF13454 NAD_binding_9: FAD-NA 67.5 17 0.00037 30.4 6.1 42 308-349 103-145 (156)
271 PRK07045 putative monooxygenas 67.3 12 0.00026 36.2 5.8 43 307-349 107-153 (388)
272 TIGR00275 flavoprotein, HI0933 66.8 18 0.00039 35.4 7.0 41 303-343 102-143 (400)
273 PRK11259 solA N-methyltryptoph 66.6 13 0.00028 35.6 5.9 27 82-108 11-40 (376)
274 PTZ00153 lipoamide dehydrogena 66.5 4.4 9.5E-05 42.6 2.7 33 80-112 118-158 (659)
275 PRK09077 L-aspartate oxidase; 66.2 4.3 9.2E-05 41.6 2.5 27 83-109 17-45 (536)
276 TIGR03452 mycothione_red mycot 65.2 5 0.00011 40.0 2.8 42 308-349 212-253 (452)
277 TIGR03329 Phn_aa_oxid putative 64.8 13 0.00029 37.0 5.7 26 83-109 33-63 (460)
278 PRK07846 mycothione reductase; 64.8 4.9 0.00011 40.1 2.6 42 308-349 209-250 (451)
279 PRK00711 D-amino acid dehydrog 64.7 15 0.00033 35.8 6.0 31 82-112 8-41 (416)
280 COG1249 Lpd Pyruvate/2-oxoglut 64.3 6.8 0.00015 39.3 3.4 43 304-346 211-255 (454)
281 PRK05257 malate:quinone oxidor 64.2 13 0.00029 37.6 5.6 38 305-342 182-222 (494)
282 PRK05249 soluble pyridine nucl 63.9 17 0.00038 36.1 6.4 32 81-112 8-46 (461)
283 PF00070 Pyr_redox: Pyridine n 62.7 7.5 0.00016 28.5 2.7 16 92-107 20-35 (80)
284 COG3573 Predicted oxidoreducta 62.4 6.9 0.00015 37.5 2.9 30 82-111 13-47 (552)
285 KOG2404|consensus 62.4 5.7 0.00012 37.9 2.3 27 84-110 19-48 (477)
286 PRK06184 hypothetical protein; 61.6 16 0.00036 36.8 5.8 42 308-349 111-156 (502)
287 PF07992 Pyr_redox_2: Pyridine 61.4 5.8 0.00013 34.1 2.2 24 85-108 10-36 (201)
288 PRK06996 hypothetical protein; 61.1 18 0.00039 35.2 5.8 39 307-345 116-155 (398)
289 PRK05257 malate:quinone oxidor 60.7 7.2 0.00016 39.6 2.9 29 82-110 13-46 (494)
290 PRK06116 glutathione reductase 60.7 19 0.00041 35.8 5.9 32 80-112 6-44 (450)
291 PLN02464 glycerol-3-phosphate 60.0 6.6 0.00014 41.1 2.6 31 305-335 231-262 (627)
292 PRK13339 malate:quinone oxidor 59.8 21 0.00045 36.3 6.0 37 305-341 183-222 (497)
293 PTZ00383 malate:quinone oxidor 59.7 21 0.00045 36.3 6.0 43 305-347 210-260 (497)
294 PRK08205 sdhA succinate dehydr 59.6 6.8 0.00015 40.6 2.6 27 82-108 13-41 (583)
295 PRK06475 salicylate hydroxylas 59.1 21 0.00045 34.8 5.8 37 306-342 107-145 (400)
296 PRK07608 ubiquinone biosynthes 58.5 22 0.00048 34.2 5.9 42 307-349 112-155 (388)
297 PLN02507 glutathione reductase 58.2 26 0.00056 35.5 6.5 33 80-112 27-75 (499)
298 TIGR02061 aprA adenosine phosp 58.0 6.4 0.00014 41.1 2.1 24 82-105 7-37 (614)
299 PRK09564 coenzyme A disulfide 58.0 8.1 0.00018 38.2 2.8 39 307-345 192-231 (444)
300 PRK12845 3-ketosteroid-delta-1 57.9 21 0.00045 36.9 5.8 31 81-111 19-55 (564)
301 PRK04965 NADH:flavorubredoxin 57.9 25 0.00053 34.0 6.1 42 308-349 185-227 (377)
302 TIGR02485 CobZ_N-term precorri 57.8 29 0.00064 34.2 6.7 35 300-334 117-152 (432)
303 PRK07494 2-octaprenyl-6-methox 57.6 24 0.00052 34.0 6.0 44 306-349 111-155 (388)
304 PRK06617 2-octaprenyl-6-methox 56.1 27 0.00058 33.7 6.0 43 306-349 104-148 (374)
305 PRK07364 2-octaprenyl-6-methox 55.9 26 0.00055 34.1 5.9 39 306-344 121-161 (415)
306 PF05834 Lycopene_cycl: Lycope 55.7 7.4 0.00016 37.8 2.0 25 82-106 7-36 (374)
307 TIGR01320 mal_quin_oxido malat 55.7 26 0.00056 35.4 5.9 28 82-109 8-40 (483)
308 TIGR02032 GG-red-SF geranylger 55.6 31 0.00067 31.4 6.1 37 308-344 93-130 (295)
309 PRK07845 flavoprotein disulfid 55.5 29 0.00062 34.8 6.2 32 80-112 3-41 (466)
310 TIGR01424 gluta_reduc_2 glutat 55.2 30 0.00065 34.4 6.3 31 81-112 5-42 (446)
311 TIGR02462 pyranose_ox pyranose 54.5 9.5 0.00021 39.2 2.6 25 84-108 10-37 (544)
312 PF05834 Lycopene_cycl: Lycope 54.1 29 0.00063 33.6 5.9 44 306-349 87-130 (374)
313 KOG1800|consensus 54.0 10 0.00023 36.9 2.6 34 79-112 21-63 (468)
314 COG2509 Uncharacterized FAD-de 53.4 26 0.00056 35.0 5.2 45 305-349 172-218 (486)
315 PRK13339 malate:quinone oxidor 53.3 11 0.00024 38.3 2.9 30 82-111 14-48 (497)
316 PRK06416 dihydrolipoamide dehy 53.3 29 0.00063 34.5 5.9 32 80-112 6-44 (462)
317 KOG2960|consensus 53.1 6.4 0.00014 35.3 1.0 50 85-149 87-144 (328)
318 TIGR01438 TGR thioredoxin and 52.8 10 0.00022 38.3 2.5 38 308-345 222-260 (484)
319 PRK10157 putative oxidoreducta 52.7 36 0.00078 33.7 6.4 39 311-349 113-152 (428)
320 TIGR03378 glycerol3P_GlpB glyc 52.2 36 0.00077 33.8 6.1 39 307-345 264-304 (419)
321 COG1053 SdhA Succinate dehydro 51.4 12 0.00026 38.7 2.7 27 84-110 16-45 (562)
322 PLN02697 lycopene epsilon cycl 50.7 16 0.00036 37.3 3.6 24 84-107 118-144 (529)
323 PF01134 GIDA: Glucose inhibit 50.7 9 0.00019 37.6 1.7 27 84-110 9-39 (392)
324 PRK13512 coenzyme A disulfide 50.4 14 0.0003 36.7 3.0 28 80-107 3-39 (438)
325 PLN02463 lycopene beta cyclase 49.9 37 0.0008 34.0 5.9 42 307-349 115-157 (447)
326 PLN02927 antheraxanthin epoxid 49.8 40 0.00087 35.6 6.4 43 306-349 194-236 (668)
327 TIGR01350 lipoamide_DH dihydro 49.5 39 0.00085 33.5 6.1 28 84-112 11-41 (461)
328 PRK06183 mhpA 3-(3-hydroxyphen 49.3 33 0.00072 35.0 5.6 36 310-345 117-156 (538)
329 PRK09754 phenylpropionate diox 47.7 45 0.00098 32.5 6.1 41 308-349 188-229 (396)
330 PRK09897 hypothetical protein; 47.6 47 0.001 34.1 6.4 40 306-345 107-149 (534)
331 PRK08010 pyridine nucleotide-d 47.3 45 0.00097 33.0 6.1 32 81-112 6-45 (441)
332 PF00890 FAD_binding_2: FAD bi 47.2 41 0.00089 32.8 5.8 26 83-108 8-36 (417)
333 PRK12266 glpD glycerol-3-phosp 46.2 40 0.00087 34.2 5.6 27 83-109 15-44 (508)
334 COG1249 Lpd Pyruvate/2-oxoglut 46.1 38 0.00082 34.0 5.3 34 80-113 6-46 (454)
335 PF00732 GMC_oxred_N: GMC oxid 45.3 16 0.00035 33.7 2.4 36 311-346 198-239 (296)
336 TIGR01373 soxB sarcosine oxida 44.8 50 0.0011 32.1 6.0 26 82-108 38-68 (407)
337 TIGR01813 flavo_cyto_c flavocy 44.1 49 0.0011 32.6 5.8 41 306-346 130-175 (439)
338 COG0579 Predicted dehydrogenas 43.8 18 0.0004 35.9 2.6 31 82-112 11-46 (429)
339 PRK11445 putative oxidoreducta 43.4 60 0.0013 31.0 6.1 29 318-346 111-140 (351)
340 TIGR01989 COQ6 Ubiquinone bios 43.2 46 0.001 32.9 5.5 43 307-349 118-171 (437)
341 PTZ00383 malate:quinone oxidor 42.8 21 0.00045 36.3 2.9 25 83-107 54-83 (497)
342 TIGR03140 AhpF alkyl hydropero 41.9 55 0.0012 33.3 5.9 44 306-349 267-311 (515)
343 PRK05329 anaerobic glycerol-3- 41.9 55 0.0012 32.5 5.7 43 303-346 257-301 (422)
344 PRK08274 tricarballylate dehyd 41.6 71 0.0015 31.8 6.6 38 301-338 126-164 (466)
345 TIGR01423 trypano_reduc trypan 41.0 60 0.0013 32.8 5.9 33 80-112 5-53 (486)
346 PRK13800 putative oxidoreducta 41.0 20 0.00043 39.2 2.6 23 83-105 22-47 (897)
347 PRK12842 putative succinate de 40.7 60 0.0013 33.5 6.0 29 84-112 19-50 (574)
348 TIGR03377 glycerol3P_GlpA glyc 40.6 56 0.0012 33.2 5.7 34 305-338 127-161 (516)
349 PRK08243 4-hydroxybenzoate 3-m 40.5 53 0.0011 31.8 5.3 40 307-346 104-146 (392)
350 PRK06327 dihydrolipoamide dehy 40.5 60 0.0013 32.5 5.9 33 80-112 6-51 (475)
351 PRK08244 hypothetical protein; 40.4 57 0.0012 32.8 5.7 33 311-343 105-138 (493)
352 PRK07818 dihydrolipoamide dehy 39.9 66 0.0014 32.1 6.0 33 80-113 6-45 (466)
353 PRK05329 anaerobic glycerol-3- 39.9 22 0.00047 35.4 2.5 22 83-104 11-35 (422)
354 PRK06996 hypothetical protein; 39.5 24 0.00052 34.4 2.7 24 82-105 19-49 (398)
355 PRK07846 mycothione reductase; 39.3 75 0.0016 31.6 6.3 32 81-113 4-40 (451)
356 TIGR01421 gluta_reduc_1 glutat 38.6 70 0.0015 31.8 6.0 31 81-112 5-42 (450)
357 PRK15317 alkyl hydroperoxide r 38.4 72 0.0016 32.4 6.1 43 307-349 267-310 (517)
358 PTZ00318 NADH dehydrogenase-li 38.4 32 0.0007 33.9 3.5 38 307-348 229-267 (424)
359 PRK06126 hypothetical protein; 38.3 60 0.0013 33.1 5.6 35 308-342 128-164 (545)
360 PTZ00052 thioredoxin reductase 38.3 72 0.0016 32.3 6.1 33 80-112 7-54 (499)
361 PRK14727 putative mercuric red 38.0 73 0.0016 32.0 6.0 32 81-112 19-57 (479)
362 COG1252 Ndh NADH dehydrogenase 37.7 40 0.00087 33.3 3.9 28 307-334 210-238 (405)
363 TIGR01292 TRX_reduct thioredox 37.6 74 0.0016 29.0 5.6 41 307-348 58-99 (300)
364 KOG2844|consensus 37.4 55 0.0012 34.4 4.9 52 297-348 175-231 (856)
365 PRK06134 putative FAD-binding 37.4 73 0.0016 33.0 6.0 29 84-112 22-53 (581)
366 COG0771 MurD UDP-N-acetylmuram 37.4 60 0.0013 32.5 5.1 71 79-149 8-96 (448)
367 TIGR03452 mycothione_red mycot 37.2 86 0.0019 31.2 6.4 32 81-113 5-41 (452)
368 PRK10015 oxidoreductase; Provi 37.2 81 0.0018 31.2 6.1 37 312-348 114-151 (429)
369 PRK06481 fumarate reductase fl 36.6 79 0.0017 32.1 6.0 41 306-346 190-234 (506)
370 PF08077 Cm_res_leader: Chlora 36.4 20 0.00044 17.9 0.8 16 1-17 1-16 (17)
371 PRK13369 glycerol-3-phosphate 36.1 65 0.0014 32.6 5.4 40 306-345 155-195 (502)
372 KOG1298|consensus 35.5 34 0.00074 33.6 2.9 22 82-103 53-77 (509)
373 PF01494 FAD_binding_3: FAD bi 35.3 53 0.0011 30.6 4.3 37 306-342 111-148 (356)
374 PRK02106 choline dehydrogenase 35.2 26 0.00057 36.0 2.3 20 318-337 214-233 (560)
375 PRK07843 3-ketosteroid-delta-1 33.4 1E+02 0.0022 31.8 6.2 26 84-109 17-45 (557)
376 PRK14694 putative mercuric red 32.3 97 0.0021 30.9 5.8 32 80-112 8-46 (468)
377 TIGR03364 HpnW_proposed FAD de 31.9 81 0.0018 30.0 5.0 37 306-346 145-183 (365)
378 KOG4405|consensus 31.6 5.4E+02 0.012 25.8 10.9 40 298-337 278-318 (547)
379 TIGR01790 carotene-cycl lycope 31.5 99 0.0021 29.7 5.6 43 306-349 85-129 (388)
380 PLN02172 flavin-containing mon 31.1 85 0.0018 31.5 5.2 41 305-345 113-153 (461)
381 TIGR01438 TGR thioredoxin and 31.1 1.1E+02 0.0023 30.9 5.9 30 81-110 5-49 (484)
382 PLN02697 lycopene epsilon cycl 30.6 1E+02 0.0022 31.6 5.7 43 306-349 192-236 (529)
383 PRK13748 putative mercuric red 30.0 1.1E+02 0.0023 31.3 5.8 33 79-112 99-138 (561)
384 PF09465 LBR_tudor: Lamin-B re 29.9 50 0.0011 22.8 2.2 32 318-349 17-48 (55)
385 PRK07251 pyridine nucleotide-d 29.9 1.2E+02 0.0026 29.9 6.0 40 308-348 200-240 (438)
386 PRK01438 murD UDP-N-acetylmura 29.3 54 0.0012 32.9 3.4 70 79-149 17-105 (480)
387 PRK09754 phenylpropionate diox 28.6 43 0.00094 32.6 2.5 31 79-109 145-182 (396)
388 PRK07538 hypothetical protein; 28.6 1.1E+02 0.0024 29.8 5.5 25 320-344 119-143 (413)
389 TIGR02374 nitri_red_nirB nitri 28.5 1.2E+02 0.0025 32.8 5.9 40 310-349 186-226 (785)
390 PRK06185 hypothetical protein; 28.0 1.4E+02 0.0031 28.8 6.1 40 307-346 109-153 (407)
391 TIGR00136 gidA glucose-inhibit 27.9 48 0.001 34.6 2.8 26 83-108 9-37 (617)
392 PRK06370 mercuric reductase; V 27.7 1.5E+02 0.0032 29.6 6.2 32 80-112 7-45 (463)
393 PRK07066 3-hydroxybutyryl-CoA 27.3 54 0.0012 31.3 2.9 26 78-103 7-39 (321)
394 COG0578 GlpA Glycerol-3-phosph 27.2 48 0.001 34.0 2.6 32 79-110 13-51 (532)
395 PRK02705 murD UDP-N-acetylmura 27.1 44 0.00095 33.2 2.3 22 85-106 11-35 (459)
396 KOG0405|consensus 26.9 72 0.0016 31.0 3.5 44 302-345 225-271 (478)
397 TIGR02053 MerA mercuric reduct 26.9 1.3E+02 0.0028 29.9 5.6 27 85-112 11-40 (463)
398 PTZ00318 NADH dehydrogenase-li 26.6 1.1E+02 0.0024 30.1 5.0 27 79-105 11-44 (424)
399 PRK07819 3-hydroxybutyryl-CoA 26.2 51 0.0011 30.8 2.4 27 79-105 6-39 (286)
400 PRK07121 hypothetical protein; 25.9 1.3E+02 0.0028 30.3 5.4 33 304-336 175-208 (492)
401 KOG1335|consensus 25.6 50 0.0011 32.4 2.3 42 301-342 246-290 (506)
402 PRK06115 dihydrolipoamide dehy 25.4 1.6E+02 0.0035 29.4 6.0 33 80-112 5-44 (466)
403 PRK12844 3-ketosteroid-delta-1 25.1 1.2E+02 0.0026 31.3 5.1 27 84-110 16-45 (557)
404 PRK12843 putative FAD-binding 24.5 1.6E+02 0.0035 30.4 5.9 29 84-112 26-57 (578)
405 TIGR02360 pbenz_hydroxyl 4-hyd 24.2 1.4E+02 0.003 29.0 5.2 42 305-346 102-146 (390)
406 PRK12835 3-ketosteroid-delta-1 24.1 1.5E+02 0.0033 30.6 5.7 27 83-109 20-49 (584)
407 PF00743 FMO-like: Flavin-bind 23.9 1.3E+02 0.0029 30.8 5.1 41 305-345 86-131 (531)
408 PRK11101 glpA sn-glycerol-3-ph 23.7 1.2E+02 0.0027 31.0 4.9 33 306-338 149-182 (546)
409 TIGR01810 betA choline dehydro 23.3 56 0.0012 33.3 2.3 20 318-337 207-226 (532)
410 PRK06912 acoL dihydrolipoamide 23.2 1.9E+02 0.0041 28.7 6.0 31 80-111 2-39 (458)
411 PF04820 Trp_halogenase: Trypt 23.2 45 0.00098 33.4 1.6 25 80-104 1-35 (454)
412 COG0686 Ald Alanine dehydrogen 22.6 68 0.0015 30.6 2.5 36 79-114 169-219 (371)
413 PRK12839 hypothetical protein; 22.5 1.7E+02 0.0036 30.3 5.6 28 84-111 18-48 (572)
414 KOG2853|consensus 22.2 86 0.0019 30.4 3.1 30 85-114 97-142 (509)
415 PRK09564 coenzyme A disulfide 21.6 1.8E+02 0.0038 28.6 5.4 28 80-107 2-38 (444)
416 PRK08132 FAD-dependent oxidore 21.6 1.7E+02 0.0037 29.8 5.4 33 310-342 129-163 (547)
417 TIGR03378 glycerol3P_GlpB glyc 21.2 72 0.0016 31.7 2.5 23 82-104 8-33 (419)
418 TIGR03169 Nterm_to_SelD pyridi 21.1 65 0.0014 30.7 2.2 27 80-106 1-37 (364)
419 KOG2665|consensus 20.9 77 0.0017 30.4 2.4 64 44-107 12-86 (453)
420 PRK14989 nitrite reductase sub 20.5 2.1E+02 0.0045 31.3 6.0 40 310-349 191-233 (847)
421 PF03721 UDPG_MGDP_dh_N: UDP-g 20.1 67 0.0014 27.9 1.8 27 79-105 1-34 (185)
No 1
>KOG1276|consensus
Probab=100.00 E-value=4.1e-33 Score=262.43 Aligned_cols=258 Identities=40% Similarity=0.685 Sum_probs=214.3
Q ss_pred hhhHhHhhh---cCCCC--EEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666 83 VIRILCTVL---RISTP--ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS 157 (350)
Q Consensus 83 viaGLaaA~---~~G~~--VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~ 157 (350)
+|+||+||+ +++.+ |+|+||.+|+||+++|.+-.+|+.||.||..+.|..+++.++++++.+||+++++.+++.+
T Consensus 20 GiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~ 99 (491)
T KOG1276|consen 20 GISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLEDELQPIDIS 99 (491)
T ss_pred chhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccceeeecCCC
Confidence 359999998 45544 5669999999999999554689999999999998776677899999999999999998888
Q ss_pred CCCCcceEEEeCCeEEECCCChhhh-cccCCCCCHHHHHHHHHHhhcC--CCCCCCCcHHHHHHHhhChHHHHHHHHHhh
Q psy7666 158 HPTAQNRLIYVNKKLHKLPSNFFSL-FKTHSPFSKPLIFSILHDLTTK--TVPKSDESIYDFVSRRFGSEVADYAVSSMI 234 (350)
Q Consensus 158 ~p~~~~~~i~~~g~~~~~p~~~~~~-~~~~~~l~~~~~~~~l~~~~~~--~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~ 234 (350)
+|...++++|++|+++.+|+++.+. ..-++++..+.++.++++.+++ .....|+||.+|++|+||+++.+++++|++
T Consensus 100 ~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF~~RrfG~eV~d~~isp~i 179 (491)
T KOG1276|consen 100 HPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESFARRRFGKEVADRLISPFI 179 (491)
T ss_pred ChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHHHHHhhhHHHHHHHHHHHh
Confidence 8988899999999999999987763 3333567777888999999876 455679999999999999999999999999
Q ss_pred hhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHH
Q psy7666 235 CGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGE 314 (350)
Q Consensus 235 ~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~ 314 (350)
+|+|++|+.++|+++.|+.+|+.|++||+++.|++..+|.....+. .+......+..+.+.++.++||++++++++.+
T Consensus 180 ~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~--~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~ 257 (491)
T KOG1276|consen 180 RGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKK--AETALSAQAKKEKWTMFSLKGGLETLPKALRK 257 (491)
T ss_pred CccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCC--ccchhhhhhcccccchhhhhhhHhHhHHHHHH
Confidence 9999999999999999999999999999999999987764322211 11111112245677889999999999999999
Q ss_pred hhc-CCCEEEeCcceeEEEEeCCe-EEEEe
Q psy7666 315 HLS-NKVEVKMDTTCTNLEFLEKG-VKAVD 342 (350)
Q Consensus 315 ~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~ 342 (350)
.|. ..+.|.++-++..+.....+ |.+++
T Consensus 258 ~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl 287 (491)
T KOG1276|consen 258 SLGEREVSISLGLKLSGNSKSRSGNWSLTL 287 (491)
T ss_pred HhcccchhhhcccccccccccccCCceeEe
Confidence 998 67889999999999876543 66554
No 2
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.98 E-value=1.4e-31 Score=260.94 Aligned_cols=241 Identities=29% Similarity=0.482 Sum_probs=196.1
Q ss_pred ehhhHhHhhh---cCC--CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCC
Q psy7666 82 LVIRILCTVL---RIS--TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156 (350)
Q Consensus 82 ~viaGLaaA~---~~G--~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~ 156 (350)
++||||+||+ +++ ++|+|||+.+|+||.++|+. .+|+.||.|+|.|....+ .++++++|||+++.+.+
T Consensus 8 ~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~---~~l~li~eLGled~l~~--- 80 (444)
T COG1232 8 GGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKE---EILDLIKELGLEDKLLW--- 80 (444)
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchH---HHHHHHHHhCcHHhhcc---
Confidence 4569999998 567 99999999999999999999 699999999999976644 89999999999998875
Q ss_pred CCCCCcceEEEeCCeEEECCCCh-hhhcccCCCCCHHHHHHHHHHhhcC--CCCCCCCcHHHHHHHhhChHHHHHHHHHh
Q psy7666 157 SHPTAQNRLIYVNKKLHKLPSNF-FSLFKTHSPFSKPLIFSILHDLTTK--TVPKSDESIYDFVSRRFGSEVADYAVSSM 233 (350)
Q Consensus 157 ~~p~~~~~~i~~~g~~~~~p~~~-~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl 233 (350)
+.....|+|.+|+++++|.+. ..+.....+ +...+.+++.++..+ +...++.|+++|++++||++++++++.|+
T Consensus 81 --~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~r~~fG~ev~~~~~~pl 157 (444)
T COG1232 81 --NSTARKYIYYDGKLHPIPTPTILGIPLLLLS-SEAGLARALQEFIRPKSWEPKQDISVGEFIRRRFGEEVVERFIEPL 157 (444)
T ss_pred --CCcccceEeeCCcEEECCccceeecCCcccc-chhHHHHHHHhhhcccCCCCCCCcCHHHHHHHHHhHHHHHHHHHHH
Confidence 333456999999999999863 222221111 123455666776654 46678999999999999999999999999
Q ss_pred hhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHH
Q psy7666 234 ICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLG 313 (350)
Q Consensus 234 ~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa 313 (350)
++++|+++++++|+.+.++.+...+..+++++.|+.+....+. ......+.+++||+++|+++|+
T Consensus 158 l~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~---------------~~~~~~~~~~~gG~~~l~~al~ 222 (444)
T COG1232 158 LEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQ---------------SLKKEKFGYLRGGLQSLIEALA 222 (444)
T ss_pred hhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccc---------------ccccccccccCccHHHHHHHHH
Confidence 9999999999999998899999999999999888875421100 0112347889999999999999
Q ss_pred HhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 314 EHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 314 ~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+.++ .+|+++++|++|.++..++.+.+.+|..+|
T Consensus 223 ~~l~--~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~ 256 (444)
T COG1232 223 EKLE--AKIRTGTEVTKIDKKGAGKTIVDVGGEKIT 256 (444)
T ss_pred HHhh--hceeecceeeEEEEcCCccEEEEcCCceEE
Confidence 9998 569999999999999888888888888765
No 3
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.97 E-value=1.5e-29 Score=252.30 Aligned_cols=242 Identities=24% Similarity=0.353 Sum_probs=187.7
Q ss_pred ehhhHhHhhh---cC------CCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RI------STPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~------G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
|+||||+||+ ++ |++|+||||++|+|||++|.+ .+|+.+|+|+||+++.++ ++++|+++||+++.+.
T Consensus 9 aGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~---~~~~l~~~lgl~~~~~ 84 (463)
T PRK12416 9 GGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNE---HVMPLVKDLNLEEEMV 84 (463)
T ss_pred CCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCH---HHHHHHHHcCCcccee
Confidence 4559999997 33 389999999999999999999 589999999999988776 8999999999987655
Q ss_pred ccCCCCCCCcceEEEeCCeEEECCCCh--------hhhcccCCCCCHHHHHHHHHHhhcCC-CCCCCCcHHHHHHHhhCh
Q psy7666 153 PITSSHPTAQNRLIYVNKKLHKLPSNF--------FSLFKTHSPFSKPLIFSILHDLTTKT-VPKSDESIYDFVSRRFGS 223 (350)
Q Consensus 153 ~~~~~~p~~~~~~i~~~g~~~~~p~~~--------~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~Sv~~~l~~~~~~ 223 (350)
. +.....+++.+|+.+++|.+. ..++.. ..+++..+.+.+.+.+.+. ...+++|+.+|++++++.
T Consensus 85 ~-----~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~ 158 (463)
T PRK12416 85 Y-----NETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSS-TLVSTKGKIVALKDFITKNKEFTKDTSLALFLESFLGK 158 (463)
T ss_pred c-----CCCCceEEEECCeEEECCCCCeecCCCChHHhhcC-CcCCHHHHHHhhhhhccCCCCCCCCCCHHHHHHHhcCH
Confidence 4 222457888888887776541 112221 2344445556666655432 234789999999999999
Q ss_pred HHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecC
Q psy7666 224 EVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEG 303 (350)
Q Consensus 224 ~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~G 303 (350)
++.+.++.|++.++|+.+++++|+.++++.+...+..+++++.++.... .... ......+++++|
T Consensus 159 ~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~--------------~~~~~~~~~~~g 223 (463)
T PRK12416 159 ELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENK-KQFQ--------------SAGNKKFVSFKG 223 (463)
T ss_pred HHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhh-hccC--------------CCCCCceEeeCC
Confidence 9999999999999999999999999988988888888888887764211 0000 011234788999
Q ss_pred cHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 304 GLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 304 G~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
||++|+++|++.|. +++|++|++|++|++++++|.|++.+|++++
T Consensus 224 G~~~l~~~l~~~l~-~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ 268 (463)
T PRK12416 224 GLSTIIDRLEEVLT-ETVVKKGAVTTAVSKQGDRYEISFANHESIQ 268 (463)
T ss_pred CHHHHHHHHHHhcc-cccEEcCCEEEEEEEcCCEEEEEECCCCEEE
Confidence 99999999999996 3589999999999999999999988887654
No 4
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.97 E-value=2.5e-29 Score=250.28 Aligned_cols=250 Identities=28% Similarity=0.424 Sum_probs=187.2
Q ss_pred ehhhHhHhhh---cC----CCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccccc
Q psy7666 82 LVIRILCTVL---RI----STPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPI 154 (350)
Q Consensus 82 ~viaGLaaA~---~~----G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~ 154 (350)
++||||+||+ ++ |++|+||||++|+|||++|.+ .+|+.+|.|+|||++.++ +++++++++|+.+....
T Consensus 10 aGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~---~~~~l~~~lgl~~~~~~- 84 (462)
T TIGR00562 10 GGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKK---SAPDLVKDLGLEHVLVS- 84 (462)
T ss_pred CCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCCh---HHHHHHHHcCCCccccc-
Confidence 3459999997 45 999999999999999999999 589999999999998886 79999999999765432
Q ss_pred CCCCCCCcceEEEeC-CeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChHHHHHHHHHh
Q psy7666 155 TSSHPTAQNRLIYVN-KKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSM 233 (350)
Q Consensus 155 ~~~~p~~~~~~i~~~-g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl 233 (350)
+.....+++.+ |+.+++|..+..++.. ..+......+...+.+.+.....++|+.+|+++++++.+.+.++.|+
T Consensus 85 ----~~~~~~~~~~~~g~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~~g~~~~~~~~~p~ 159 (462)
T TIGR00562 85 ----DATGQRYVLVNRGKLMPVPTKIAPFVKT-GLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRRFGDEVVENLIEPL 159 (462)
T ss_pred ----CCCCceEEEECCCceecCCCChHHHhcC-CCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHhcCHHHHHHHHHHH
Confidence 12245677776 8888888766555443 22332233333323333222345699999999999999999999999
Q ss_pred hhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHH
Q psy7666 234 ICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLG 313 (350)
Q Consensus 234 ~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa 313 (350)
+.++|+.+++++|+.++++.++..+..+++++.++.... ..+.. .....|. ...+..+.++.||+++|+++|+
T Consensus 160 ~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~~---~~~~~~~--~~~~~~~~~~~gG~~~l~~~l~ 232 (462)
T TIGR00562 160 LSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTR--NLPQG---SGLQLTA--KKQGQDFQTLATGLETLPEEIE 232 (462)
T ss_pred hcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhc--ccCcc---ccccccc--cccCCceEecchhHHHHHHHHH
Confidence 999999999999999999999887777888776663210 00000 0000010 1112236889999999999999
Q ss_pred HhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 314 EHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 314 ~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+.|. +++|++|++|++|.+++++|.|++.+|++++
T Consensus 233 ~~l~-~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ 267 (462)
T TIGR00562 233 KRLK-LTKVYKGTKVTKLSHRGSNYTLELDNGVTVE 267 (462)
T ss_pred HHhc-cCeEEcCCeEEEEEecCCcEEEEECCCcEEE
Confidence 9995 3689999999999999889999988887654
No 5
>PLN02576 protoporphyrinogen oxidase
Probab=99.96 E-value=5e-28 Score=243.25 Aligned_cols=248 Identities=27% Similarity=0.408 Sum_probs=185.5
Q ss_pred ehhhHhHhhh---cC-CCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666 82 LVIRILCTVL---RI-STPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS 157 (350)
Q Consensus 82 ~viaGLaaA~---~~-G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~ 157 (350)
+++|||+||+ ++ |++|+||||++|+|||++|.+ .+|+.+|.|+|+|++.++ .+.+++++ |+.+.++...
T Consensus 20 aGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~---~~~~l~~~-gl~~~~~~~~-- 92 (496)
T PLN02576 20 AGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDP---ELTSAVDS-GLRDDLVFPD-- 92 (496)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcH---HHHHHHHc-CChhheecCC--
Confidence 3459999997 56 999999999999999999999 599999999999988776 77888877 9877655421
Q ss_pred CCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhc---CCCCCCCCcHHHHHHHhhChHHHHHHHHHhh
Q psy7666 158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTT---KTVPKSDESIYDFVSRRFGSEVADYAVSSMI 234 (350)
Q Consensus 158 ~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~---~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~ 234 (350)
+ ....+++.+|+.+++|.++..++.. ..++..++.+++...+. .....+++|+++|+++++++.+++.+++|++
T Consensus 93 -~-~~~~~~~~~g~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~g~~~~~~~~~p~~ 169 (496)
T PLN02576 93 -P-QAPRYVVWNGKLRPLPSNPIDLPTF-DLLSAPGKIRAGLGAFGWKRPPPPGREESVGEFVRRHLGDEVFERLIDPFV 169 (496)
T ss_pred -C-CceEEEEECCEEEEcCCChHHhcCc-CcCChhHHHHHhHHHhhccCCCCCCCCCcHHHHHHHhcCHHHHHHHHHHHh
Confidence 2 2346788899999998876555433 34555555555444332 1223578999999999999999999999999
Q ss_pred hhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCC-cchhHHHHhhhcccceEEEecCcHHHHHHHHH
Q psy7666 235 CGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSG-YEESELYRRSRIEKWSVWSVEGGLQTIVNTLG 313 (350)
Q Consensus 235 ~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa 313 (350)
.++|+.+++++|+.++++.++..++.+|+++.+++...+.....+.. ..+.. . ....+...++++|||++|+++|+
T Consensus 170 ~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~gG~~~L~~~la 246 (496)
T PLN02576 170 SGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPR-L--PKPKGQTVGSFRGGLQTLPDALA 246 (496)
T ss_pred CceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccc-c--ccccCCeeEeccchHHHHHHHHH
Confidence 99999999999999999999999989999888876433110000000 00000 0 00123346889999999999999
Q ss_pred HhhcCCCEEEeCcceeEEEEeCCe-EEEEeC
Q psy7666 314 EHLSNKVEVKMDTTCTNLEFLEKG-VKAVDQ 343 (350)
Q Consensus 314 ~~L~~g~~I~l~~~V~~I~~~~~g-v~V~~~ 343 (350)
+.++ .++|++|++|++|++.+++ |.|++.
T Consensus 247 ~~l~-~~~i~l~~~V~~I~~~~~~~~~v~~~ 276 (496)
T PLN02576 247 KRLG-KDKVKLNWKVLSLSKNDDGGYSLTYD 276 (496)
T ss_pred HhhC-cCcEEcCCEEEEEEECCCCcEEEEEe
Confidence 9984 2589999999999998876 666544
No 6
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.95 E-value=1e-26 Score=230.51 Aligned_cols=243 Identities=28% Similarity=0.431 Sum_probs=178.8
Q ss_pred ehhhHhHhhh---cCC--CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCC
Q psy7666 82 LVIRILCTVL---RIS--TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156 (350)
Q Consensus 82 ~viaGLaaA~---~~G--~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~ 156 (350)
++||||+||+ ++| ++|+||||++|+|||++|.+ .+|+.+|+|+|++++.++ +++++++++|+++.....
T Consensus 8 aGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~---~~~~l~~~lgl~~~~~~~-- 81 (451)
T PRK11883 8 GGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKP---SAPALVKELGLEDELVAN-- 81 (451)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcH---HHHHHHHHcCCccceecC--
Confidence 4459999997 556 99999999999999999999 589999999999987776 799999999997654431
Q ss_pred CCCCCcceEEEeCCeEEECCCCh-hhhccc------CCCCCHHHHHHHHHHhhcC-CCCCCCCcHHHHHHHhhChHHHHH
Q psy7666 157 SHPTAQNRLIYVNKKLHKLPSNF-FSLFKT------HSPFSKPLIFSILHDLTTK-TVPKSDESIYDFVSRRFGSEVADY 228 (350)
Q Consensus 157 ~~p~~~~~~i~~~g~~~~~p~~~-~~~~~~------~~~l~~~~~~~~l~~~~~~-~~~~~~~Sv~~~l~~~~~~~~~~~ 228 (350)
.....+++.+|+.+.+|... .++... ...+...+..+...+.... ....+++|+.+|+++.++..+.+.
T Consensus 82 ---~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~~~~~~~~ 158 (451)
T PRK11883 82 ---TTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRRRFGDEVVEN 158 (451)
T ss_pred ---CCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHHhccHHHHHH
Confidence 12345778899988877531 111100 0122222223322222111 123578999999999999999999
Q ss_pred HHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHH
Q psy7666 229 AVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTI 308 (350)
Q Consensus 229 ~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L 308 (350)
++.|++.++|+.+++++|+..+++.+...+..+++++.++.... .... ......+++++||+++|
T Consensus 159 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~~~G~~~l 223 (451)
T PRK11883 159 LIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKAL-PKEK--------------KKTKGVFGTLKGGLQSL 223 (451)
T ss_pred HHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhc-cccC--------------CCCCCceEeeccHHHHH
Confidence 99999999999999999999888877666666676655554321 0000 01123467899999999
Q ss_pred HHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 309 VNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 309 ~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+++|++.++. .+|++|++|++|+.++++|.|++.+|++++
T Consensus 224 ~~~l~~~l~~-~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ 263 (451)
T PRK11883 224 IEALEEKLPA-GTIHKGTPVTKIDKSGDGYEIVLSNGGEIE 263 (451)
T ss_pred HHHHHHhCcC-CeEEeCCEEEEEEEcCCeEEEEECCCCEEE
Confidence 9999999961 189999999999999889999998887664
No 7
>PRK07208 hypothetical protein; Provisional
Probab=99.92 E-value=4.4e-24 Score=213.78 Aligned_cols=232 Identities=18% Similarity=0.171 Sum_probs=164.3
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH 158 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~ 158 (350)
|++|||+||+ ++|++|+|+|+++++||+++|.. .+|+.+|.|+|++++.++ .+++|++++++...+..
T Consensus 12 aGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~---~~~~l~~~l~~~~~~~~----- 82 (479)
T PRK07208 12 AGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSP---EVMDLWNEILPDDDFLL----- 82 (479)
T ss_pred cCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCH---HHHHHHHHhcCCCcccc-----
Confidence 4459999998 57999999999999999999999 589999999999988776 99999999987444432
Q ss_pred CCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcC--CCCCCCCcHHHHHHHhhChHHHHHHHHHhhhh
Q psy7666 159 PTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTK--TVPKSDESIYDFVSRRFGSEVADYAVSSMICG 236 (350)
Q Consensus 159 p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~ 236 (350)
.....+++.+|+.+.+|....+.+. .+....+.+.+.+.+.. ....+++|+.+|+++++|+.+.+.++.|++.+
T Consensus 83 -~~~~~~~~~~g~~~~~p~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~ 158 (479)
T PRK07208 83 -RPRLSRIYYRGKFFDYPLKAFDALK---NLGLWRTAKCGASYLKARLRPRKEEDSFEDWVINRFGRRLYSTFFKGYTEK 158 (479)
T ss_pred -ccccceEEECCEEecCCcchhHHHH---hCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhCHHHHHHHHHHhhhh
Confidence 1134677889998888865433332 23333334444343321 12246799999999999999999999999999
Q ss_pred cccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcC-CCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHh
Q psy7666 237 ICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKR-PDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEH 315 (350)
Q Consensus 237 ~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~ 315 (350)
+|+.+++++|+.++++.+. ..++ ...+...+... ..+....... ......+.+++||+++|+++|++.
T Consensus 159 ~~~~~~~~~s~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~gG~~~l~~~L~~~ 227 (479)
T PRK07208 159 VWGVPCDEISADWAAQRIK-----GLSL-GKAIRNALRRSLGLKRRNKEVE-----TSLIEEFRYPKLGPGQLWETAAEK 227 (479)
T ss_pred hhCCChHHCCChHHhCccc-----CCCH-HHHHHHHhhhcccccccCCCcc-----ccceeEEeCCCCCcchHHHHHHHH
Confidence 9999999999988765431 1122 11221111100 0000000000 000124677899999999999999
Q ss_pred hc-CCCEEEeCcceeEEEEeCCe
Q psy7666 316 LS-NKVEVKMDTTCTNLEFLEKG 337 (350)
Q Consensus 316 L~-~g~~I~l~~~V~~I~~~~~g 337 (350)
+. .|++|++|++|++|..++++
T Consensus 228 l~~~g~~i~~~~~V~~I~~~~~~ 250 (479)
T PRK07208 228 LEALGGKVVLNAKVVGLHHDGDG 250 (479)
T ss_pred HHHcCCEEEeCCEEEEEEEcCCc
Confidence 98 78999999999999998776
No 8
>PRK07233 hypothetical protein; Provisional
Probab=99.91 E-value=3.4e-23 Score=204.05 Aligned_cols=227 Identities=20% Similarity=0.220 Sum_probs=164.3
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH 158 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~ 158 (350)
++||||+||+ ++|++|+|||+++++|||++|++ .+|+.+|.|+|++.+.++ ++.++++++|+.+...+.
T Consensus 7 aGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~---~~~~l~~~lg~~~~~~~~---- 78 (434)
T PRK07233 7 GGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDE---ALLELLDELGLEDKLRWR---- 78 (434)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccH---HHHHHHHHcCCCCceeec----
Confidence 4569999997 67999999999999999999999 489999999999987776 999999999997655442
Q ss_pred CCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhh-----cCCCCCCCCcHHHHHHHhhChHHHHHHHHHh
Q psy7666 159 PTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLT-----TKTVPKSDESIYDFVSRRFGSEVADYAVSSM 233 (350)
Q Consensus 159 p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~-----~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl 233 (350)
. ....++.+|+.++++.. ..+... ..+...+..+...... ......++.|+.+|+++++++...+.++.|+
T Consensus 79 -~-~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~ 154 (434)
T PRK07233 79 -E-TKTGYYVDGKLYPLGTP-LELLRF-PHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRWSGEGVYEVFWEPL 154 (434)
T ss_pred -c-CceEEEECCeEecCCCH-HHHHcC-CCCCHHHHHHhHHHHHhhhhcccccccccccHHHHHHHhcCHHHHHHHHHHH
Confidence 1 22334567776555332 222221 2333323332222211 1112356799999999999999999999999
Q ss_pred hhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHH
Q psy7666 234 ICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLG 313 (350)
Q Consensus 234 ~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa 313 (350)
+.++|+.+++++|+.+++..+... +.. .. . .....+++++||+++|+++|+
T Consensus 155 ~~~~~~~~~~~~s~~~~~~~~~~~---------~~~-~~----~---------------~~~~~~~~~~gG~~~l~~~l~ 205 (434)
T PRK07233 155 LESKFGDYADDVSAAWLWSRIKRR---------GNR-RY----S---------------LFGEKLGYLEGGFATLIDALA 205 (434)
T ss_pred HhcccCCCccccCHHHHHHHHhhh---------hcc-cc----c---------------cCCceEeccCCCHHHHHHHHH
Confidence 999999999999998765544311 000 00 0 001246789999999999999
Q ss_pred Hhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 314 EHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 314 ~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+.+. .|++|++|++|++|+.+++++.+...+|++++
T Consensus 206 ~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ 242 (434)
T PRK07233 206 EAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEED 242 (434)
T ss_pred HHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEE
Confidence 9998 78999999999999998888765555666553
No 9
>PLN02612 phytoene desaturase
Probab=99.88 E-value=4.6e-21 Score=195.41 Aligned_cols=231 Identities=15% Similarity=0.208 Sum_probs=161.8
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV 151 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l 151 (350)
++|+|| +||+||+ ++|++|+|+|+++++||++.|++..+|+++|.|+|++.+.++ +++++++++|+.+.+
T Consensus 94 ~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~---~~~~ll~elG~~~~~ 170 (567)
T PLN02612 94 LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYP---NVQNLFGELGINDRL 170 (567)
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCc---hHHHHHHHhCCcccc
Confidence 556655 9999997 679999999999999999999874489999999999998887 899999999997654
Q ss_pred cccCCCCCCCcceEEEe--CCeEE--E----CCCC---hhhhcccCCCCCHHHHHHHHHHhh---c---C-CCCCCCCcH
Q psy7666 152 IPITSSHPTAQNRLIYV--NKKLH--K----LPSN---FFSLFKTHSPFSKPLIFSILHDLT---T---K-TVPKSDESI 213 (350)
Q Consensus 152 ~~~~~~~p~~~~~~i~~--~g~~~--~----~p~~---~~~~~~~~~~l~~~~~~~~l~~~~---~---~-~~~~~~~Sv 213 (350)
.... ....+... ++... . +|.. +..++.....+++.++.++...+. . + ....++.|+
T Consensus 171 ~~~~-----~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv 245 (567)
T PLN02612 171 QWKE-----HSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSV 245 (567)
T ss_pred eecc-----cceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcH
Confidence 3311 01112111 22221 2 2322 233443334456656555443321 0 1 123578999
Q ss_pred HHHHHHh-hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhh
Q psy7666 214 YDFVSRR-FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSR 292 (350)
Q Consensus 214 ~~~l~~~-~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~ 292 (350)
.+|+++. +++.+.+.++.|++.++++.+++++|+..++..+..+ +..
T Consensus 246 ~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~-----------l~~--------------------- 293 (567)
T PLN02612 246 KEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF-----------LQE--------------------- 293 (567)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHH-----------Hhc---------------------
Confidence 9999985 6788888899999999999999999998876654321 100
Q ss_pred cccceEEEecCcH-HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe--EEEEeCCCceec
Q psy7666 293 IEKWSVWSVEGGL-QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG--VKAVDQPIHQMT 349 (350)
Q Consensus 293 ~~~~~~~~~~GG~-~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g--v~V~~~~G~~~~ 349 (350)
..+.....+.|+. +.++++|++.|. .|++|++|++|++|+.++++ +.|.+.+|++++
T Consensus 294 ~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ 354 (567)
T PLN02612 294 KHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVE 354 (567)
T ss_pred cCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEE
Confidence 0012345566665 679999999987 78999999999999987665 347777887764
No 10
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.88 E-value=1.8e-21 Score=179.66 Aligned_cols=229 Identities=17% Similarity=0.244 Sum_probs=163.9
Q ss_pred ceeehh----hHhHhhh--cCCCCEEEEecCCCCCcceEEEec---CCCeEEecCCceecC-CCCCchHHHHHHHHcCCC
Q psy7666 79 LLLLVI----RILCTVL--RISTPITLLESSSRLGGWVRSVQS---PEGLIFEKGPRTIRP-KGRLGANTLKLVEDLGLA 148 (350)
Q Consensus 79 ~~v~vi----aGLaaA~--~~G~~VtVlEa~drvGGRi~T~~~---~~G~~~D~Ga~~~~~-~~~~~~~l~~l~~elGl~ 148 (350)
++|||| |||+||+ ..-++||||||.+|+||+.+|+.. .+|+.+|+|.++.+. .|| ++..|++++|+.
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYp---nl~~Lf~~iGv~ 85 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYP---NLTRLFKTIGVD 85 (447)
T ss_pred cceEEEcccchhhhhHHhhhcccceEEEeccccccCccceeeccccCCceeecceeEEecCCCcc---hHHHHHHHcCCC
Confidence 567766 9999998 456999999999999999999952 367899999999976 787 999999999996
Q ss_pred CcccccCCCCCCCcceEEEeCCeEEECCC--ChhhhcccCCCCCHHHHHHHHHHhhc---------CCCCCCCCcHHHHH
Q psy7666 149 DQVIPITSSHPTAQNRLIYVNKKLHKLPS--NFFSLFKTHSPFSKPLIFSILHDLTT---------KTVPKSDESIYDFV 217 (350)
Q Consensus 149 ~~l~~~~~~~p~~~~~~i~~~g~~~~~p~--~~~~~~~~~~~l~~~~~~~~l~~~~~---------~~~~~~~~Sv~~~l 217 (350)
..--.++ -..-+.+|. ..+.. .+.+++.+...+..+.+++++.+.++ ......++|+.+||
T Consensus 86 t~as~Ms-------f~v~~d~gg-lEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L 157 (447)
T COG2907 86 TKASFMS-------FSVSLDMGG-LEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYL 157 (447)
T ss_pred Cccccee-------EEEEecCCc-eeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHH
Confidence 5322211 011122232 23322 12223322222333445666655421 11346789999999
Q ss_pred HHh-hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccc
Q psy7666 218 SRR-FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKW 296 (350)
Q Consensus 218 ~~~-~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 296 (350)
+++ |+..+.++++.|+..++|+.+..+++..-+.. +..+...+|.+. + ...+
T Consensus 158 ~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~-~~~f~~nhGll~---l-----------------------~~rp 210 (447)
T COG2907 158 KQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACN-FLVFTDNHGLLY---L-----------------------PKRP 210 (447)
T ss_pred HhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHH-HHHHHhccCcee---c-----------------------CCCC
Confidence 985 99999999999999999999999887643322 223333444321 1 1133
Q ss_pred eEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCce
Q psy7666 297 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQ 347 (350)
Q Consensus 297 ~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~ 347 (350)
.+.++.||....++.|++.+. ++|++++||.+|..-.+||.|+..+|+.
T Consensus 211 ~wrtV~ggS~~yvq~laa~~~--~~i~t~~~V~~l~rlPdGv~l~~~~G~s 259 (447)
T COG2907 211 TWRTVAGGSRAYVQRLAADIR--GRIETRTPVCRLRRLPDGVVLVNADGES 259 (447)
T ss_pred ceeEcccchHHHHHHHhcccc--ceeecCCceeeeeeCCCceEEecCCCCc
Confidence 477889999999999999995 7999999999999999999999999986
No 11
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.88 E-value=2e-21 Score=190.26 Aligned_cols=218 Identities=16% Similarity=0.201 Sum_probs=148.2
Q ss_pred cCCCCEEEEecCCCCCcceEEEecCCCe--EEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCCCCcceEEEeC
Q psy7666 92 RISTPITLLESSSRLGGWVRSVQSPEGL--IFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVN 169 (350)
Q Consensus 92 ~~G~~VtVlEa~drvGGRi~T~~~~~G~--~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~ 169 (350)
++|++|+||||++|+|||++|++ .+|+ .+|.|+|++++.++ ++.+++++||+...... +.....+...+
T Consensus 8 ~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~---~~~~l~~~lgl~~~~~~-----~~~~~~~~~~~ 78 (419)
T TIGR03467 8 RAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYT---NLLALLRRIGAEPRLQG-----PRLPLPFYDPG 78 (419)
T ss_pred hCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccH---HHHHHHHHhCCchhhhc-----ccCCcceecCC
Confidence 67999999999999999999999 4754 59999999988776 89999999999765332 11111121112
Q ss_pred CeEEE-----CCCC--hhhhcccCCCCCHHHHHHHHHHhh---c-CCCCCCCCcHHHHHHHh-hChHHHHHHHHHhhhhc
Q psy7666 170 KKLHK-----LPSN--FFSLFKTHSPFSKPLIFSILHDLT---T-KTVPKSDESIYDFVSRR-FGSEVADYAVSSMICGI 237 (350)
Q Consensus 170 g~~~~-----~p~~--~~~~~~~~~~l~~~~~~~~l~~~~---~-~~~~~~~~Sv~~~l~~~-~~~~~~~~~~~pl~~~~ 237 (350)
+.... +|.. ....+.....+...++.++...+. . .....++.|+.+|++++ +++.+.+.+++|++.++
T Consensus 79 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~ 158 (419)
T TIGR03467 79 GRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVGDWLQAAGQSERLIERLWEPLLLSA 158 (419)
T ss_pred CCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 22111 2221 111111224555555555443321 1 11245789999999987 48889999999999999
Q ss_pred ccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHH-HHHHhh
Q psy7666 238 CAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVN-TLGEHL 316 (350)
Q Consensus 238 ~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~-aLa~~L 316 (350)
|+.+++++|+.+++..+.. ++. .. ....++++++||+++++. +|++.|
T Consensus 159 ~~~~~~~~s~~~~~~~~~~----------~~~-----~~----------------~~~~~~~~~~gG~~~~~~~~l~~~l 207 (419)
T TIGR03467 159 LNTPPERASAALAAKVLRD----------SFL-----AG----------------RAASDLLLPRVPLSELFPEPARRWL 207 (419)
T ss_pred cCCCHHHHHHHHHHHHHHH----------HHh-----cC----------------CCcceeeeeCCCHHHHHHHHHHHHH
Confidence 9999999998776543321 111 00 012247889999988765 589888
Q ss_pred c-CCCEEEeCcceeEEEEeCCeEEEEe-CCCceec
Q psy7666 317 S-NKVEVKMDTTCTNLEFLEKGVKAVD-QPIHQMT 349 (350)
Q Consensus 317 ~-~g~~I~l~~~V~~I~~~~~gv~V~~-~~G~~~~ 349 (350)
. .|++|++|++|++|+.++++|+++. .+|++++
T Consensus 208 ~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~ 242 (419)
T TIGR03467 208 DSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLP 242 (419)
T ss_pred HHcCCEEEcCCeeeEEEEcCCcceEEEecCCcccc
Confidence 6 7899999999999999988866543 3565543
No 12
>PLN02487 zeta-carotene desaturase
Probab=99.87 E-value=8.2e-21 Score=192.29 Aligned_cols=216 Identities=13% Similarity=0.167 Sum_probs=157.9
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV 151 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l 151 (350)
++|+|| +||++|+ ++|++|+|||+++++||+++|+...+|+.+|+|+|++.+.++ +++++++++|+.+++
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~---~~~~ll~~LGl~~~~ 152 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYN---NLFRLMKKVGADENL 152 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcH---HHHHHHHhcCCcccc
Confidence 466665 9999997 579999999999999999999964479999999999998876 999999999998765
Q ss_pred cccCCCCCCCcceEEEeCCeEEE----CC--CCh---hhhcccCCCCCHHHHHHHHHHhhc---------------CCCC
Q psy7666 152 IPITSSHPTAQNRLIYVNKKLHK----LP--SNF---FSLFKTHSPFSKPLIFSILHDLTT---------------KTVP 207 (350)
Q Consensus 152 ~~~~~~~p~~~~~~i~~~g~~~~----~p--~~~---~~~~~~~~~l~~~~~~~~l~~~~~---------------~~~~ 207 (350)
.. +.....+...+|.... +| ..+ ..+++. ..+.+.++.++....+. .+..
T Consensus 153 ~~-----~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~-~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~ 226 (569)
T PLN02487 153 LV-----KDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTT-NQLEPYDKARNALALATSPVVRALVDPDGAMRDIRD 226 (569)
T ss_pred cc-----cccceeEEecCCEEeeeccCCCCCchhhhHHHHHcC-CCCCHHHHHhhcccccccchhhhccCcccccccccc
Confidence 53 2222234444555422 22 211 133332 45565555554322211 1123
Q ss_pred CCCCcHHHHHHHhhChH-HHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhH
Q psy7666 208 KSDESIYDFVSRRFGSE-VADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESE 286 (350)
Q Consensus 208 ~~~~Sv~~~l~~~~~~~-~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~ 286 (350)
.+++|+.+|++++.++. +++++++|++.+.++.+++++|+.+++..+.. .+ . .
T Consensus 227 ~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~---------~~-~----~------------ 280 (569)
T PLN02487 227 LDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSL---------FA-T----K------------ 280 (569)
T ss_pred ccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH---------Hh-h----c------------
Confidence 56799999999998855 99999999999999999999999886554421 00 0 0
Q ss_pred HHHhhhcccceEEEecCcHHH-HHHHHHHhhc-CCCEEEeCcceeEEEEeC
Q psy7666 287 LYRRSRIEKWSVWSVEGGLQT-IVNTLGEHLS-NKVEVKMDTTCTNLEFLE 335 (350)
Q Consensus 287 ~y~~~~~~~~~~~~~~GG~~~-L~~aLa~~L~-~g~~I~l~~~V~~I~~~~ 335 (350)
.....+.+++||++. |++++++.|. .|++|+++++|++|..++
T Consensus 281 ------~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~ 325 (569)
T PLN02487 281 ------TEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDK 325 (569)
T ss_pred ------CCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEec
Confidence 012236788999995 9999999999 999999999999999973
No 13
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.87 E-value=2.2e-20 Score=185.87 Aligned_cols=223 Identities=15% Similarity=0.220 Sum_probs=152.5
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH 158 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~ 158 (350)
+++|||+||+ ++|++|+|||+++++|||++|++..+|+.+|.|+|++.+.++ +++++++++|+.+.+...
T Consensus 7 aG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~---~~~~l~~~lg~~~~~~~~---- 79 (453)
T TIGR02731 7 AGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYP---NMLQLLKELNIEDRLQWK---- 79 (453)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCc---hHHHHHHHcCCccceeec----
Confidence 4569999997 679999999999999999999863479999999999998887 899999999997644321
Q ss_pred CCCcceEEEe----CCeEE--ECC---CCh---hhhcccCCCCCHHHHHHHHHHhhc------C-CCCCCCCcHHHHHHH
Q psy7666 159 PTAQNRLIYV----NKKLH--KLP---SNF---FSLFKTHSPFSKPLIFSILHDLTT------K-TVPKSDESIYDFVSR 219 (350)
Q Consensus 159 p~~~~~~i~~----~g~~~--~~p---~~~---~~~~~~~~~l~~~~~~~~l~~~~~------~-~~~~~~~Sv~~~l~~ 219 (350)
+ ...++. ++... .+| ..+ ..++.....+++.++.++...+.. + ....+++|+.+|+++
T Consensus 80 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 156 (453)
T TIGR02731 80 S---HSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRK 156 (453)
T ss_pred C---CceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHH
Confidence 1 111221 22222 122 221 222322234556555554443321 1 123578999999997
Q ss_pred -hhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceE
Q psy7666 220 -RFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSV 298 (350)
Q Consensus 220 -~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 298 (350)
.+++.+.+.++.|++.++++.+++++|+.++++.+..+. ... .+...
T Consensus 157 ~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~-----------~~~---------------------~g~~~ 204 (453)
T TIGR02731 157 QGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL-----------QER---------------------HGSKM 204 (453)
T ss_pred cCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-----------hcC---------------------CCCee
Confidence 488888989999999999999999999988876554211 000 01112
Q ss_pred EEecCc-HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-E-EEEeCCCc
Q psy7666 299 WSVEGG-LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-V-KAVDQPIH 346 (350)
Q Consensus 299 ~~~~GG-~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v-~V~~~~G~ 346 (350)
....|| +++++++|++.|. .|++|++|++|++|+..+++ + .|++.+|+
T Consensus 205 ~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~ 256 (453)
T TIGR02731 205 AFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGE 256 (453)
T ss_pred EeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCC
Confidence 233444 5778999999887 78999999999999876554 3 35554443
No 14
>PLN02268 probable polyamine oxidase
Probab=99.86 E-value=2e-21 Score=192.35 Aligned_cols=209 Identities=21% Similarity=0.250 Sum_probs=137.8
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH 158 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~ 158 (350)
|+||||+||+ ++|++|+||||+||+|||++|.+ .+|+.+|+|++|+++... .+++.+|++++|++. .+..
T Consensus 8 aGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~-~~~~~~l~~~lgl~~--~~~~--- 80 (435)
T PLN02268 8 GGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCN-ENPLAPLIGRLGLPL--YRTS--- 80 (435)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCC-CchHHHHHHHhCCce--Eecc---
Confidence 4569999997 57999999999999999999988 589999999999986421 237999999999953 2211
Q ss_pred CCCcceEEEe---------CCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcC-CCCCCCCcHHHHHHHh--------
Q psy7666 159 PTAQNRLIYV---------NKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTK-TVPKSDESIYDFVSRR-------- 220 (350)
Q Consensus 159 p~~~~~~i~~---------~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~~~~~Sv~~~l~~~-------- 220 (350)
. ...+++. ++....+|......+ ...+.+++.+.... ....+++|+.+|+++.
T Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 151 (435)
T PLN02268 81 G--DNSVLYDHDLESYALFDMDGNQVPQELVTKV-------GETFERILEETEKVRDEHEEDMSLLQAISIVLERHPELR 151 (435)
T ss_pred C--CccccccccccccceecCCCCCCCHHHHHHH-------HHHHHHHHHHHHHHHhccCCCcCHHHHHHHHhhhCcccc
Confidence 0 1122222 222222222111000 01122333332221 1235789999987543
Q ss_pred ---hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccce
Q psy7666 221 ---FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWS 297 (350)
Q Consensus 221 ---~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 297 (350)
+++.+.+.++.| +.++|+.+++++|+..... + .. + .+ .
T Consensus 152 ~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~-----~----~~----~------------------------~g-~ 192 (435)
T PLN02268 152 LEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ-----E----EL----L------------------------EG-G 192 (435)
T ss_pred cchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC-----c----cc----c------------------------CC-C
Confidence 345556666667 4567888999998754200 0 00 0 01 1
Q ss_pred EEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 298 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 298 ~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
...+.+|+++|+++|++.+ +|++|++|++|.+.+++|.|++.+|++++
T Consensus 193 ~~~~~~G~~~l~~~l~~~~----~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ 240 (435)
T PLN02268 193 HGLMVRGYDPVINTLAKGL----DIRLNHRVTKIVRRYNGVKVTVEDGTTFV 240 (435)
T ss_pred ceeecCCHHHHHHHHhccC----ceeCCCeeEEEEEcCCcEEEEECCCcEEE
Confidence 2458899999999998754 69999999999999999999999987664
No 15
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.86 E-value=1.6e-20 Score=187.74 Aligned_cols=213 Identities=15% Similarity=0.157 Sum_probs=154.0
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH 158 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~ 158 (350)
++|+||+||+ ++|++|+|||+++++||+++|+...+|+.+|.|+|++.+.++ +++++++++|+.+.+...
T Consensus 7 ~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~---~~~~~~~~lg~~~~~~~~---- 79 (474)
T TIGR02732 7 AGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYA---NLFRLMKKVGAEDNLLLK---- 79 (474)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchH---HHHHHHHHcCCccccccc----
Confidence 4569999997 679999999999999999999853579999999999998876 899999999998765431
Q ss_pred CCCcceEEEeCCeEEECC------CC---hhhhcccCCCCCHHHHHHHHHHhhc-C--------------CCCCCCCcHH
Q psy7666 159 PTAQNRLIYVNKKLHKLP------SN---FFSLFKTHSPFSKPLIFSILHDLTT-K--------------TVPKSDESIY 214 (350)
Q Consensus 159 p~~~~~~i~~~g~~~~~p------~~---~~~~~~~~~~l~~~~~~~~l~~~~~-~--------------~~~~~~~Sv~ 214 (350)
.....+...+++...++ .. +..+++. ..+++.++++++..... + +...+++|+.
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~-~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 157 (474)
T TIGR02732 80 -EHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTT-SQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFA 157 (474)
T ss_pred -cceeEEEcCCCcccccccCCCCCCchhhhHHHhcC-CCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHH
Confidence 11122333344433221 11 1233332 46677776665544321 0 1134679999
Q ss_pred HHHHHhhCh-HHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhc
Q psy7666 215 DFVSRRFGS-EVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRI 293 (350)
Q Consensus 215 ~~l~~~~~~-~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~ 293 (350)
+|++++.++ ..++++++|++.++++.+++++|+.++++.+..+. . . .
T Consensus 158 ~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~---------~-----~------------------~ 205 (474)
T TIGR02732 158 EWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA---------A-----K------------------T 205 (474)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---------h-----C------------------C
Confidence 999998766 47999999999999999999999988766543110 0 0 0
Q ss_pred ccceEEEecCcHHH-HHHHHHHhhc-CCCEEEeCcceeEEEEeC
Q psy7666 294 EKWSVWSVEGGLQT-IVNTLGEHLS-NKVEVKMDTTCTNLEFLE 335 (350)
Q Consensus 294 ~~~~~~~~~GG~~~-L~~aLa~~L~-~g~~I~l~~~V~~I~~~~ 335 (350)
.+.....++||++. +.++|++.|. .|++|+++++|++|+.++
T Consensus 206 ~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~ 249 (474)
T TIGR02732 206 EASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEK 249 (474)
T ss_pred CcceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEec
Confidence 02235667888877 6677999998 899999999999999864
No 16
>PLN02568 polyamine oxidase
Probab=99.84 E-value=9.2e-20 Score=184.31 Aligned_cols=239 Identities=15% Similarity=0.184 Sum_probs=156.8
Q ss_pred hhhHhHhhh---cCC-----CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccccc
Q psy7666 83 VIRILCTVL---RIS-----TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPI 154 (350)
Q Consensus 83 viaGLaaA~---~~G-----~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~ 154 (350)
++|||+||. +.| ++|+|||+++|+|||++|.+ .+|+.+|.|++|+++.. +++++++++++|+.....+.
T Consensus 14 G~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~g~~--~~~~~~l~~~~g~~~~~~~~ 90 (539)
T PLN02568 14 GMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FGGERIEMGATWIHGIG--GSPVYKIAQEAGSLESDEPW 90 (539)
T ss_pred CHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eCCeEEecCCceeCCCC--CCHHHHHHHHhCCccccCcc
Confidence 349999997 345 99999999999999999999 48999999999998753 34899999999996532210
Q ss_pred CC-CCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhh--------------cC--------CCCCCCC
Q psy7666 155 TS-SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLT--------------TK--------TVPKSDE 211 (350)
Q Consensus 155 ~~-~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~--------------~~--------~~~~~~~ 211 (350)
.. ........++..+|. .++..+..-+. ..+..++.+.. .. .....+.
T Consensus 91 ~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (539)
T PLN02568 91 ECMDGFPDRPKTVAEGGF--EVDPSIVESIS-------TLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGG 161 (539)
T ss_pred eecccccccceEEccCCc--CCCHHHHHHHH-------HHHHHHHHHhhcccccccccccccccccchhccchhccCCCC
Confidence 00 000001122223343 22221110000 00111111110 00 0011345
Q ss_pred cHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHH-HHHHHhhhcCCCCCCcchhHHHHh
Q psy7666 212 SIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIK-GAIKEMMSKRPDLSGYEESELYRR 290 (350)
Q Consensus 212 Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~-g~~~~~~~~~~~~~~~~~~~~y~~ 290 (350)
|+++|+++++++ ..+.+..|+..++++.+.+.++...+++.+..+++.+++... +.+ .. . . ...|.
T Consensus 162 Sl~~fl~~~l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~l-s~-~--~-------~~~~~- 228 (539)
T PLN02568 162 SVGSFLRRGLDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTL-DL-A--A-------ESEYR- 228 (539)
T ss_pred cHHHHHHHHHHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhc-cc-c--c-------cCcce-
Confidence 999999998876 666778899999999999999888888888777655544321 111 00 0 0 00010
Q ss_pred hhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 291 SRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 291 ~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.. ....+++.||+++|+++|++.|+ +.+|++|++|++|++++++|+|++.+|++++
T Consensus 229 -~~-~g~~~~i~gG~~~Li~~La~~L~-~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~ 284 (539)
T PLN02568 229 -MF-PGEEITIAKGYLSVIEALASVLP-PGTIQLGRKVTRIEWQDEPVKLHFADGSTMT 284 (539)
T ss_pred -ec-CCCeEEECCcHHHHHHHHHhhCC-CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEE
Confidence 01 12367899999999999999996 4589999999999999999999999997764
No 17
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.77 E-value=2e-17 Score=166.65 Aligned_cols=220 Identities=18% Similarity=0.269 Sum_probs=143.5
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCC--Cc--cccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLA--DQ--VIPI 154 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~--~~--l~~~ 154 (350)
++++||+||. ++|++|+|||+++++||+++|++ .+|+.||.|++|+.... .+.++++++|++ +. +.+.
T Consensus 6 aG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~----~~~~l~~~lg~~l~~~l~~~~~ 80 (502)
T TIGR02734 6 AGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMPE----ALEELFALAGRDLADYVELVPL 80 (502)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEcccc----HHHHHHHHcCCChhheEEEEEC
Confidence 5679999986 68999999999999999999999 59999999999996432 688899999853 22 2221
Q ss_pred CCCCCCCcceEEEeCCeEEECCCChhhh---cccCCCCCHH---HHHHHHHH--------hh-cC---------------
Q psy7666 155 TSSHPTAQNRLIYVNKKLHKLPSNFFSL---FKTHSPFSKP---LIFSILHD--------LT-TK--------------- 204 (350)
Q Consensus 155 ~~~~p~~~~~~i~~~g~~~~~p~~~~~~---~~~~~~l~~~---~~~~~l~~--------~~-~~--------------- 204 (350)
+ | .....+.+|+.+.++.+...+ +....+-... .+...+.. .+ .+
T Consensus 81 ~---~--~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (502)
T TIGR02734 81 D---P--FYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQL 155 (502)
T ss_pred C---C--ceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhh
Confidence 1 2 223344456666776543211 1110111111 11111110 00 00
Q ss_pred CCCCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcch
Q psy7666 205 TVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEE 284 (350)
Q Consensus 205 ~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~ 284 (350)
.......|+.+|+++.+.++.++.++.. ....++.++++.++...+ + .+. .
T Consensus 156 ~~~~~~~s~~~~~~~~~~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l--~------------~~~-~------------- 206 (502)
T TIGR02734 156 LALLAWRSLYSKVARFFSDERLRQAFSF-HALFLGGNPFRTPSIYAL--I------------SAL-E------------- 206 (502)
T ss_pred hhccCcCCHHHHHHhhcCCHHHHHHhcc-cceeeccCcccchHHHHH--H------------HHH-H-------------
Confidence 0123468899999888877777766652 334566777666532210 0 000 0
Q ss_pred hHHHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCceec
Q psy7666 285 SELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQMT 349 (350)
Q Consensus 285 ~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~~ 349 (350)
...+.+++.||++.++++|++.+. .|++|+++++|++|..++++ +.|.+.+|++++
T Consensus 207 ---------~~~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ 264 (502)
T TIGR02734 207 ---------REWGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLD 264 (502)
T ss_pred ---------hhceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEE
Confidence 012467899999999999999998 89999999999999988776 678888887664
No 18
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.74 E-value=1e-16 Score=166.72 Aligned_cols=244 Identities=16% Similarity=0.140 Sum_probs=142.5
Q ss_pred cccccccccccccccccccC-CCCCCCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCC----eE
Q psy7666 53 ARYLSFKFQDCHCETSIQKR-PFPPDLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEG----LI 120 (350)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G----~~ 120 (350)
.|++.||+|.+......... +.....++|+|| +||+||. +.|++|+|+|+++|+|||++|... .| +.
T Consensus 212 ~~~g~in~gv~~~~~~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~-~g~~~~~~ 290 (808)
T PLN02328 212 LEHGYINFGVAPVIKEAQLRSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKM-KGDGVVAA 290 (808)
T ss_pred hccCceeeeccccccccccCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccccccc-CCCCccee
Confidence 48888999987543221111 111122445544 9999998 679999999999999999999984 44 36
Q ss_pred EecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEE--CCCChhhhcccCCCCCHHHHHHHH
Q psy7666 121 FEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHK--LPSNFFSLFKTHSPFSKPLIFSIL 198 (350)
Q Consensus 121 ~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~--~p~~~~~~~~~~~~l~~~~~~~~l 198 (350)
+|+|++|+++.. ++++..+++++|++..... ....+++.+|+.+. ++..+... +.+++
T Consensus 291 ~d~Gas~i~g~~--~npl~~l~~~lgl~~~~~~-------~~~~~~~~dG~~~~~~~~~~v~~~-----------f~~lL 350 (808)
T PLN02328 291 ADLGGSVLTGIN--GNPLGVLARQLGLPLHKVR-------DICPLYLPDGKAVDAEIDSKIEAS-----------FNKLL 350 (808)
T ss_pred ccCCceeecCCC--ccHHHHHHHHcCCceEecC-------CCceEEeCCCcCcchhhhhhHHHH-----------HHHHH
Confidence 999999998764 3478999999999653222 12355666676431 12111100 11111
Q ss_pred HHh------hcCCCCCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHh
Q psy7666 199 HDL------TTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM 272 (350)
Q Consensus 199 ~~~------~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~ 272 (350)
... ..+.....+.|+++|+++. . .. . + +..++++.++.. ..++.++...++.+..+....
T Consensus 351 ~~~~klr~~~~~~~~~~D~SLg~~le~~-~-~~----~-----~-~~~~~~e~~Ll~--w~lanlE~~~gs~ls~LSl~~ 416 (808)
T PLN02328 351 DRVCKLRQAMIEEVKSVDVNLGTALEAF-R-HV----Y-----K-VAEDPQERMLLN--WHLANLEYANASLMSNLSMAY 416 (808)
T ss_pred HHHHHHHHhhhhcccccCcCHHHHHHHH-h-hh----h-----c-cCCCHHHHHHHH--HHHHHHhccchhhHHHHHhhh
Confidence 111 1111123578999999642 1 11 0 0 122333333221 122222323333322221111
Q ss_pred hhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 273 MSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 273 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.... ..| ......+.+.||+++|+++|++.| .|++|++|++|.+.+++|.| +.+|++++
T Consensus 417 w~qd---------~~~----e~~G~~~~v~GG~~~Li~aLa~~L----~I~ln~~V~~I~~~~dgV~V-~~~G~~~~ 475 (808)
T PLN02328 417 WDQD---------DPY----EMGGDHCFIPGGNDTFVRELAKDL----PIFYERTVESIRYGVDGVIV-YAGGQEFH 475 (808)
T ss_pred hhcc---------ccc----cCCCeEEEECCcHHHHHHHHHhhC----CcccCCeeEEEEEcCCeEEE-EeCCeEEE
Confidence 0000 000 112346789999999999999998 39999999999999999988 45676664
No 19
>PLN02529 lysine-specific histone demethylase 1
Probab=99.74 E-value=1.9e-16 Score=164.06 Aligned_cols=238 Identities=15% Similarity=0.100 Sum_probs=135.9
Q ss_pred ccccccccccccccccccCCCCCCCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecC-CC--eEEec
Q psy7666 54 RYLSFKFQDCHCETSIQKRPFPPDLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSP-EG--LIFEK 123 (350)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~-~G--~~~D~ 123 (350)
|++.+|++.+....+ . -|.....++|+|| |||+||. ++|++|+|||+++|+|||++|.... +| +.+|+
T Consensus 138 ~~~~inc~vnp~~~~-~-~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~Dl 215 (738)
T PLN02529 138 YNGYINFGVSPSFAS-P-IPEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDL 215 (738)
T ss_pred hCCCcceeecccccC-C-CCcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEec
Confidence 556667666533222 1 1211223556655 9999997 5799999999999999999999842 13 48999
Q ss_pred CCceecCCCCCchHHHHHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHH---
Q psy7666 124 GPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHD--- 200 (350)
Q Consensus 124 Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~--- 200 (350)
||+|+++.. .+++..+++++|++.. +.+ + ...++..+|... +...... + ...+.+++..
T Consensus 216 Gaswi~g~~--~npl~~la~~lgl~~~--~~~---~--~~~~~~~~G~~v--~~~~~~~------~-~~~~~~~l~~~~~ 277 (738)
T PLN02529 216 GGSVITGIH--ANPLGVLARQLSIPLH--KVR---D--NCPLYKPDGALV--DKEIDSN------I-EFIFNKLLDKVTE 277 (738)
T ss_pred CCeeccccc--cchHHHHHHHhCCCcc--ccC---C--CceEEeCCCcCc--chhhhhh------H-HHHHHHHHHHHHH
Confidence 999998765 3579999999998643 221 1 234455566533 2110000 0 0011122211
Q ss_pred hhcC-CCCCCCCcHHHHHHHhh------ChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhh
Q psy7666 201 LTTK-TVPKSDESIYDFVSRRF------GSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMM 273 (350)
Q Consensus 201 ~~~~-~~~~~~~Sv~~~l~~~~------~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~ 273 (350)
+... ....++.|+++|+.+.. -....+.++...+..+....+..++..++.. | ....
T Consensus 278 l~~~~~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~--~-------------~~~~- 341 (738)
T PLN02529 278 LRQIMGGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDLSAAY--W-------------DQDD- 341 (738)
T ss_pred HHHhcccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHhhhhH--h-------------hhcc-
Confidence 1110 12356899999997531 1111122333222222222222222111100 0 0000
Q ss_pred hcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 274 SKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 274 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
. + ..+...+.+.||+++|+++|++.+ .|++|++|++|++.+++|+|++. +++++
T Consensus 342 ---~----------~----e~~G~~~~i~GG~~~Li~aLA~~L----~IrLnt~V~~I~~~~dGVtV~t~-~~~~~ 395 (738)
T PLN02529 342 ---P----------Y----EMGGDHCFLAGGNWRLINALCEGV----PIFYGKTVDTIKYGNDGVEVIAG-SQVFQ 395 (738)
T ss_pred ---c----------c----ccCCceEEECCcHHHHHHHHHhcC----CEEcCCceeEEEEcCCeEEEEEC-CEEEE
Confidence 0 0 112236779999999999999976 49999999999999999999864 34443
No 20
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.74 E-value=2.4e-16 Score=158.58 Aligned_cols=212 Identities=16% Similarity=0.161 Sum_probs=124.8
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCc-ccccCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ-VIPITSS 157 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~-l~~~~~~ 157 (350)
++++||+||. ++|++|+|||+++++|||++|++ .+|+.||.|+||+....+ ...+.++++++|+... ....+
T Consensus 9 aG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~-~~~~~~~~~~lg~~~~~~~~~d-- 84 (492)
T TIGR02733 9 AGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGLEP-GGIHARIFRELGIPLPEAKILD-- 84 (492)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEecCc-CCHHHHHHHHcCCCCcccccCC--
Confidence 3449999986 78999999999999999999999 599999999999854221 1267889999998642 22211
Q ss_pred CCCCcceEEEeCC-eEEECCCChhh----hcccCCCCCHHHHHHHHHHh-------h---------------------cC
Q psy7666 158 HPTAQNRLIYVNK-KLHKLPSNFFS----LFKTHSPFSKPLIFSILHDL-------T---------------------TK 204 (350)
Q Consensus 158 ~p~~~~~~i~~~g-~~~~~p~~~~~----~~~~~~~l~~~~~~~~l~~~-------~---------------------~~ 204 (350)
| .....+.+| ..+.++.+... +... .+-. ..++..+... + .+
T Consensus 85 -~--~~~~~~~dg~~~~~~~~d~~~~~~~l~~~-~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (492)
T TIGR02733 85 -P--ACAVDLPDGSEPIPLWHDPDRWQKERERQ-FPGS-ERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRP 159 (492)
T ss_pred -C--CcEEEECCCceEeeeecCHHHHHHHHHHH-CCCh-HHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcCh
Confidence 2 223444555 33344433211 1110 0000 0111111000 0 00
Q ss_pred C----CCCCCCcHHHHHHHh--hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCC
Q psy7666 205 T----VPKSDESIYDFVSRR--FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPD 278 (350)
Q Consensus 205 ~----~~~~~~Sv~~~l~~~--~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~ 278 (350)
. ......|+.+|+++. +.+..++.++...+....+.++++.++...+- ++ ..
T Consensus 160 ~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~------ 217 (492)
T TIGR02733 160 DTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGAT---------------VL-QM------ 217 (492)
T ss_pred hhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHH---------------Hh-hc------
Confidence 0 011246777777664 45555555555433222223344443222100 00 00
Q ss_pred CCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666 279 LSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG 337 (350)
Q Consensus 279 ~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g 337 (350)
.....+.++++||+++|+++|++.+. .|++|+++++|++|..++++
T Consensus 218 -------------~~~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~ 264 (492)
T TIGR02733 218 -------------AQAPHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGR 264 (492)
T ss_pred -------------cccCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCe
Confidence 00012467899999999999999998 78999999999999988764
No 21
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.70 E-value=5.4e-16 Score=155.65 Aligned_cols=218 Identities=19% Similarity=0.208 Sum_probs=122.4
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcC-CCCc-ccccCCC
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLG-LADQ-VIPITSS 157 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elG-l~~~-l~~~~~~ 157 (350)
+++||+||. ++|++|+|||+++++|||++|.+. +||.||+|++++.... ...++++++ +... +...
T Consensus 12 G~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~-~Gf~fd~G~~~~~~~~-----~~~~~~~l~~l~~~~l~~~--- 82 (487)
T COG1233 12 GLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFEL-DGFRFDTGPSWYLMPD-----PGPLFRELGNLDADGLDLL--- 82 (487)
T ss_pred ChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEec-cceEeccCcceeecCc-----hHHHHHHhccCcccceeee---
Confidence 349999986 789999999999999999999995 8999999999885433 226777777 5442 2221
Q ss_pred CCCCcceEEEeCCeEEECCCChhhhccc---CCCCC---HHHHHHHHHH----h----hcCC-C----------------
Q psy7666 158 HPTAQNRLIYVNKKLHKLPSNFFSLFKT---HSPFS---KPLIFSILHD----L----TTKT-V---------------- 206 (350)
Q Consensus 158 ~p~~~~~~i~~~g~~~~~p~~~~~~~~~---~~~l~---~~~~~~~l~~----~----~~~~-~---------------- 206 (350)
.+.......+.+|....+..++...... ..+.. +..+.+.+.+ . ..+. .
T Consensus 83 ~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (487)
T COG1233 83 PPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLL 162 (487)
T ss_pred ccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHH
Confidence 1222223333445655555443211110 01111 1111111111 0 0000 0
Q ss_pred CCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhH
Q psy7666 207 PKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESE 286 (350)
Q Consensus 207 ~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~ 286 (350)
.....++.++++..|.....+..+.......+ .++.+.+ +++. ++ ..
T Consensus 163 ~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~--a~~~---------------~~-~~-------------- 209 (487)
T COG1233 163 GFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPP--ALYL---------------LL-SH-------------- 209 (487)
T ss_pred HHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchh--HHHH---------------HH-HH--------------
Confidence 01122333333333333333333322111111 2222222 1000 00 00
Q ss_pred HHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC-eEEEEeCCCce
Q psy7666 287 LYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK-GVKAVDQPIHQ 347 (350)
Q Consensus 287 ~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~-gv~V~~~~G~~ 347 (350)
.....++++++|||+.|+++|++.++ .|++|+++++|++|..+++ ++.|++.+|..
T Consensus 210 -----~~~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~ 267 (487)
T COG1233 210 -----LGLSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGEN 267 (487)
T ss_pred -----hcccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccce
Confidence 01234689999999999999999999 9999999999999999876 58888888733
No 22
>KOG0685|consensus
Probab=99.69 E-value=4.1e-16 Score=150.02 Aligned_cols=230 Identities=17% Similarity=0.221 Sum_probs=124.5
Q ss_pred ehhhHhHhhhc----CCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666 82 LVIRILCTVLR----ISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS 157 (350)
Q Consensus 82 ~viaGLaaA~~----~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~ 157 (350)
|++|||+||.+ .+.+|+||||+||+||||+|+++.+| .+|+||+|+|+.. +|++++++++.|-..-+...
T Consensus 29 AG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~-~ielGAqwihG~~--gNpVY~la~~~g~~~~~~~t--- 102 (498)
T KOG0685|consen 29 AGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADG-VIELGAQWIHGEE--GNPVYELAKEYGDLKLLEVT--- 102 (498)
T ss_pred CchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCC-eEeecceeecCCC--CChHHHHHHHhCccceeccC---
Confidence 34599999973 46999999999999999999997555 8999999999843 56999999999821111110
Q ss_pred CCCCc-ceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcC-CCCCCCCcHHHHHHHhhChHHHHHHHHHhhh
Q psy7666 158 HPTAQ-NRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTK-TVPKSDESIYDFVSRRFGSEVADYAVSSMIC 235 (350)
Q Consensus 158 ~p~~~-~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~ 235 (350)
.+... +.-.-.+|+. +|..+.+.+. ++...+...... ....+..|+++|+.+.|.+.+.
T Consensus 103 g~~~~~~~~~~~~g~~--V~~~~~~~~~--------~~~~~~~~~~r~~~~~~~~~SvG~~ln~~~~~~~~--------- 163 (498)
T KOG0685|consen 103 GPAYVDNFHTRSNGEV--VPEELLDELN--------EITVTLSDKLREAEIAHDEGSVGEYLNSEFWDELR--------- 163 (498)
T ss_pred CccccceeEEEecCcc--CcHHHHHHHH--------HHHHhhhhhcccccccCccccHHHHHHHHHHHHhc---------
Confidence 01111 1112223332 2221111100 111111111111 0125778999999864332211
Q ss_pred hcccCCcc-ccc-HHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhccc-ceEEEecCcHHHHHHHH
Q psy7666 236 GICAGDAK-KIS-VNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEK-WSVWSVEGGLQTIVNTL 312 (350)
Q Consensus 236 ~~~~~~~~-~lS-~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~GG~~~L~~aL 312 (350)
...+++ +-. +...+..+.+.+++..+. ..+..-.+. +. .. |. ..++ ........|+..+++.|
T Consensus 164 --~~e~~~~~k~l~~~~~~~~~k~e~~~~~~-d~l~evs~~--~~------~e-y~--~~~ge~~~~~~~kGy~~iL~~l 229 (498)
T KOG0685|consen 164 --GPENPEIDKTLAEEILNVYFKVECSITGA-DNLSEVSLR--AL------LE-YT--ECPGEELLIWNKKGYKRILKLL 229 (498)
T ss_pred --cccccchhhHHHHHHHHHHHHHheeeecc-Cchhhhhhh--hc------cc-ee--ecCchhhheechhHHHHHHHHH
Confidence 112221 111 222344444443332110 000000000 00 00 00 0111 12344678999999999
Q ss_pred HHhhc-C----C--CEEEeCcceeEEEEeCC-eEEEEeCCCceecC
Q psy7666 313 GEHLS-N----K--VEVKMDTTCTNLEFLEK-GVKAVDQPIHQMTK 350 (350)
Q Consensus 313 a~~L~-~----g--~~I~l~~~V~~I~~~~~-gv~V~~~~G~~~~~ 350 (350)
++.++ . | .+|+++++|.+|.+++. .|.|++.||+++.+
T Consensus 230 ~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~a 275 (498)
T KOG0685|consen 230 MAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHA 275 (498)
T ss_pred hccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEec
Confidence 99887 1 1 34555599999999864 59999999998764
No 23
>PLN03000 amine oxidase
Probab=99.68 E-value=1.1e-15 Score=159.41 Aligned_cols=244 Identities=16% Similarity=0.149 Sum_probs=134.9
Q ss_pred cccccccccccccccccccCCCCCCCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCC---CeEEe
Q psy7666 53 ARYLSFKFQDCHCETSIQKRPFPPDLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPE---GLIFE 122 (350)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~---G~~~D 122 (350)
.||+.||+|..-.... .-|.....++|+|| +||+||. +.|++|+|+|+++|+|||+.|.+..+ |+.+|
T Consensus 161 ~r~G~in~g~~~~~~~--~~~~~~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~D 238 (881)
T PLN03000 161 VTHGYINFGIAQAIKD--KFPAQSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAAD 238 (881)
T ss_pred HHcCcccHHHHHHHHh--hccccCCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEee
Confidence 4889999998743221 11211122445554 9999987 57999999999999999999998422 57899
Q ss_pred cCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhh
Q psy7666 123 KGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLT 202 (350)
Q Consensus 123 ~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~ 202 (350)
+|++|+++.. ++++..+++++|++. +.. .....+++.+|+.. |........ .....+...+..+.
T Consensus 239 lGas~i~g~~--~npl~~L~~qlgl~l--~~~-----~~~~~ly~~~Gk~v--~~~~~~~ve----~~fn~lLd~~~~lr 303 (881)
T PLN03000 239 LGGSVLTGTL--GNPLGIIARQLGSSL--YKV-----RDKCPLYRVDGKPV--DPDVDLKVE----VAFNQLLDKASKLR 303 (881)
T ss_pred cCCeEEeCCC--ccHHHHHHHHcCCce--eec-----CCCCeEEEeCCcCC--chhhhhhHH----HHHHHHHHHHHHHH
Confidence 9999998765 357888999999964 331 12345667777743 221100000 00001111111110
Q ss_pred c-CCCCCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCC
Q psy7666 203 T-KTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSG 281 (350)
Q Consensus 203 ~-~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~ 281 (350)
. ......+.|+++++.. +. +++ . . ....++.++.. ..+..++...++.+..+.... .+..
T Consensus 304 ~l~~~~~~D~SLg~aLe~-~~----~~~-g----~--~~t~e~~~Ll~--w~lanLE~~~as~ls~LSl~~-wdqd---- 364 (881)
T PLN03000 304 QLMGDVSMDVSLGAALET-FR----QVS-G----N--DVATEEMGLFN--WHLANLEYANAGLVSKLSLAF-WDQD---- 364 (881)
T ss_pred HHhcccCcCCcHHHHHHH-HH----HHH-c----c--cCCHHHHHHHH--HHHHHHhcccccCHHHHHHHH-hhhc----
Confidence 0 0112346788776531 11 100 0 0 00111111110 111112222222222211110 0000
Q ss_pred cchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCC
Q psy7666 282 YEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQP 344 (350)
Q Consensus 282 ~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~ 344 (350)
..| ......+.+.||+++|+++|++.|+ |+++++|++|.+.+++|.|++.+
T Consensus 365 ----~~~----e~~G~~~~v~GG~~~LieaLa~~L~----I~Ln~~Vt~I~~~~dgV~V~~~~ 415 (881)
T PLN03000 365 ----DPY----DMGGDHCFLPGGNGRLVQALAENVP----ILYEKTVQTIRYGSNGVKVIAGN 415 (881)
T ss_pred ----ccc----cCCCceEEeCCCHHHHHHHHHhhCC----cccCCcEEEEEECCCeEEEEECC
Confidence 000 0122357799999999999999983 99999999999999999998764
No 24
>PLN02676 polyamine oxidase
Probab=99.66 E-value=1.8e-15 Score=151.73 Aligned_cols=219 Identities=15% Similarity=0.130 Sum_probs=127.9
Q ss_pred hhhHhHhhh---cCCC-CEEEEecCCCCCcceEEEecCCCeEEecCCceecCC-CCCchHHHHHHHHcCCCCcccccCCC
Q psy7666 83 VIRILCTVL---RIST-PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPK-GRLGANTLKLVEDLGLADQVIPITSS 157 (350)
Q Consensus 83 viaGLaaA~---~~G~-~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~-~~~~~~l~~l~~elGl~~~l~~~~~~ 157 (350)
+++||+||+ +.|. +|+|||+++|+|||+.+.. .+|+.+|.|++|++.. .+..+.++++++++|+......
T Consensus 35 G~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~---- 109 (487)
T PLN02676 35 GMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEGVGGPESNPIWELANKLKLRTFYSD---- 109 (487)
T ss_pred CHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEcccCcccChHHHHHHhcCCceeecC----
Confidence 349999997 5687 6999999999999999998 4899999999999641 1113589999999999653221
Q ss_pred CCCCcceEEE-eCCeEEECCCChh-hhcccCCCCCHHHHHHHHHHhhcC--CCCCCCCcH--HHHHHHhhChHHHHHHHH
Q psy7666 158 HPTAQNRLIY-VNKKLHKLPSNFF-SLFKTHSPFSKPLIFSILHDLTTK--TVPKSDESI--YDFVSRRFGSEVADYAVS 231 (350)
Q Consensus 158 ~p~~~~~~i~-~~g~~~~~p~~~~-~~~~~~~~l~~~~~~~~l~~~~~~--~~~~~~~Sv--~~~l~~~~~~~~~~~~~~ 231 (350)
.......++ .+|+.+ +.... .+... + ..+.++....... ....++.|+ .+++.+............
T Consensus 110 -~~~~~~~~~~~~g~~~--~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 181 (487)
T PLN02676 110 -FDNLSSNIYKQDGGLY--PKKVVQKSMKV---A--DASDEFGENLSISLSAKKAVDISILTAQRLFGQVPKTPLEMVID 181 (487)
T ss_pred -ccccceeEECCCCCCC--CHHHHHHHHHH---H--HHHHHHHHHHHHhhcccCCCCccHHHHHHHHhhCCCCHHHHHHH
Confidence 111122333 255432 21110 00000 0 0011111111111 123456777 444544331111111111
Q ss_pred Hhhh-hcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEe--cCcHHHH
Q psy7666 232 SMIC-GICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSV--EGGLQTI 308 (350)
Q Consensus 232 pl~~-~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~--~GG~~~L 308 (350)
-+.. ..++.+++++|+...+. . +.. . ..+...+.+ .||+++|
T Consensus 182 ~~~~~~~~~~~~~~~S~~~~~~--------~-----~~~----~------------------~~g~~~~~~~~~~G~~~l 226 (487)
T PLN02676 182 YYNYDYEFAEPPRVTSLKNTEP--------N-----PTF----V------------------DFGEDEYFVADPRGYESL 226 (487)
T ss_pred HHhccceeccCccccchhhcCc--------c-----ccc----c------------------cCCCceEEeecCCCHHHH
Confidence 1111 22566777777644211 0 000 0 001123334 6899999
Q ss_pred HHHHHHhhc-C------CCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 309 VNTLGEHLS-N------KVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 309 ~~aLa~~L~-~------g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+++|++.+. . +++|+||++|++|.+++++|+|++.+|++++
T Consensus 227 ~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~ 274 (487)
T PLN02676 227 VYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYR 274 (487)
T ss_pred HHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEE
Confidence 999999884 1 3689999999999999999999999998765
No 25
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.65 E-value=2.2e-16 Score=153.51 Aligned_cols=63 Identities=32% Similarity=0.508 Sum_probs=55.2
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCC--CeEEecCCceecCCCCCchHHHHHHHHcCCCCc
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWVRSVQSPE--GLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ 150 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~--G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~ 150 (350)
||||+||+ ++|++|+||||++|+|||++|++. + |+.+|+|+++|.+.++ ++..++.++|+..+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~-~~~g~~~e~G~~~~~~~~~---~~~~~~~~l~~~~~ 68 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRF-DNPGFTFELGAHRFFGMYP---NLLNLIDELGLELS 68 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEE-TTTTEEEESSS-EEETTSH---HHHHHHHHHTHHTT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecC-CccceeecCCcccccccch---hhHHHHHHhhhccc
Confidence 69999998 689999999999999999999995 6 9999999999988775 79999999998543
No 26
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.63 E-value=1.8e-15 Score=145.57 Aligned_cols=222 Identities=12% Similarity=0.082 Sum_probs=123.0
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCC
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHP 159 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p 159 (350)
..|||+||+ ++|++|+|||+++|+|||+.|.+. .|-+.|+|.+++.|.++ .++.+++++|++.+.+..+ .
T Consensus 16 GlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~---~~l~~~k~~gv~~~~fi~~---g 88 (450)
T COG1231 16 GLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHD---ALLAYAKEFGVPLEPFIRD---G 88 (450)
T ss_pred chHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccch---hhhhhHHhcCCCCCceecc---C
Confidence 349999998 789999999999999999999994 88999999999988765 9999999999976443321 1
Q ss_pred CCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHH--HhhcC-----CCCCCCCcHHHHHHHhhChHHHHHHHHH
Q psy7666 160 TAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILH--DLTTK-----TVPKSDESIYDFVSRRFGSEVADYAVSS 232 (350)
Q Consensus 160 ~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~--~~~~~-----~~~~~~~Sv~~~l~~~~~~~~~~~~~~p 232 (350)
..-..|++.... .|.-.......+... ...+..... +...+ ..+.+.+++.+| . .++ .+.+-.+
T Consensus 89 ~~~~~~~~~~~~---~p~~~~~~~~d~~~~-~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~-~~~---~~~~~~~ 159 (450)
T COG1231 89 DNVIGYVGSSKS---TPKRSLTAAADVRGL-VAELEAKARSAGELDPGLTPEDRELDLESLAAW-K-TSS---LRGLSRD 159 (450)
T ss_pred cccccccccccc---cchhccchhhhhcch-hhhhhhhhhcccccCcccCcchhhhhhHHHHhh-h-hcc---ccccccC
Confidence 111122221111 121100000000000 000111110 00111 123556777887 1 111 1111111
Q ss_pred hhhh-ccc-CCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHH
Q psy7666 233 MICG-ICA-GDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVN 310 (350)
Q Consensus 233 l~~~-~~~-~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~ 310 (350)
+-.. .++ .++.+.++..-+...+ ....+..++. + ......+...|||++|++
T Consensus 160 ~~a~~~~g~~~~~~~~~~~d~~~~~----~~~~~~~~~~------------------~----e~~~~~~~~~GGmd~la~ 213 (450)
T COG1231 160 PGARVSPGPIEPGDVSLLHDALPLR----SASVVDRGIG------------------G----EIRTQMLQRLGGMDQLAE 213 (450)
T ss_pred ccceeccCCCCcccccchhhhhhhh----hhhhcccccc------------------c----cccchhhccCccHHHHHH
Confidence 1111 122 2233332211100000 0000000000 0 011224445599999999
Q ss_pred HHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666 311 TLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM 348 (350)
Q Consensus 311 aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~ 348 (350)
++++.|. ..|.++++|++|.+.+++|+|++.+..++
T Consensus 214 Afa~ql~--~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~ 249 (450)
T COG1231 214 AFAKQLG--TRILLNEPVRRIDQDGDGVTVTADDVGQY 249 (450)
T ss_pred HHHHHhh--ceEEecCceeeEEEcCCeEEEEeCCcceE
Confidence 9999996 79999999999999999999999984443
No 27
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.63 E-value=4.2e-14 Score=139.71 Aligned_cols=225 Identities=10% Similarity=0.059 Sum_probs=141.6
Q ss_pred hHhHhhh---cCCCCEEEEecCCCCCcceEEEec-------------------CCCeEEecCCceecCCCCCchHHHHHH
Q psy7666 85 RILCTVL---RISTPITLLESSSRLGGWVRSVQS-------------------PEGLIFEKGPRTIRPKGRLGANTLKLV 142 (350)
Q Consensus 85 aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~-------------------~~G~~~D~Ga~~~~~~~~~~~~l~~l~ 142 (350)
+|+++|. ++|.+|.++|++++.||+.+|... ...+.+|++|+.++... .+.+++
T Consensus 15 ~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~~G----~lv~lL 90 (443)
T PTZ00363 15 KECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMASG----ELVKIL 90 (443)
T ss_pred HHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeecCC----hHHHHH
Confidence 6666654 789999999999999999999831 02456888999887665 688898
Q ss_pred HHcCCCCcccccCCCCCCCcceEEE-eCCeEEECCCChhhhcccCCCCCH---HHHHHHHHHhhc----C---CCC--CC
Q psy7666 143 EDLGLADQVIPITSSHPTAQNRLIY-VNKKLHKLPSNFFSLFKTHSPFSK---PLIFSILHDLTT----K---TVP--KS 209 (350)
Q Consensus 143 ~elGl~~~l~~~~~~~p~~~~~~i~-~~g~~~~~p~~~~~~~~~~~~l~~---~~~~~~l~~~~~----~---~~~--~~ 209 (350)
.+.|+...+... .-...+++ .+|+.+.+|.+..+.++. +.+.. ..+.+++..... + +.. .+
T Consensus 91 ~~s~v~ryleF~-----~l~g~~v~~~~g~~~~vP~s~~~~~~s-~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~~~~d 164 (443)
T PTZ00363 91 LHTDVTRYLEFK-----VIDGSYVYQKEGKIHKVPATDMEALSS-PLMGFFEKNRCKNFLQYVSNYDENDPETHKGLNLK 164 (443)
T ss_pred hhcCccceeeeE-----EeceEEEEecCCeEEECCCCHHHHhhC-CCcchhhHHHHHHHHHHHHhhccCChhhhcccCcc
Confidence 888987644332 11346677 789999999876655554 23332 223333332211 1 111 34
Q ss_pred CCcHHHHHHHh-hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHH
Q psy7666 210 DESIYDFVSRR-FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELY 288 (350)
Q Consensus 210 ~~Sv~~~l~~~-~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y 288 (350)
..|+.+|+++. +.+...+ ++..+++.....+..+.++...+..+..+..+ + +.. +
T Consensus 165 ~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S---~--~~~----g-------------- 220 (443)
T PTZ00363 165 TMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDS---L--SRY----G-------------- 220 (443)
T ss_pred cCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHH---H--hhc----c--------------
Confidence 68999999764 4444443 33333333222211122333333322211110 0 110 1
Q ss_pred HhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe--EEEEeCCCceec
Q psy7666 289 RRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG--VKAVDQPIHQMT 349 (350)
Q Consensus 289 ~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g--v~V~~~~G~~~~ 349 (350)
...+.++.||++.|+++|++.+. .|++++|+++|++|..++++ +.|++.+|++++
T Consensus 221 ------~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~ 278 (443)
T PTZ00363 221 ------KSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAK 278 (443)
T ss_pred ------CCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEE
Confidence 11256789999999999998887 78999999999999987644 678999998764
No 28
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.61 E-value=5.3e-14 Score=141.63 Aligned_cols=225 Identities=15% Similarity=0.071 Sum_probs=127.1
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCC--CchHHHHHHHHcCCCCcccccCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGR--LGANTLKLVEDLGLADQVIPITS 156 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~--~~~~l~~l~~elGl~~~l~~~~~ 156 (350)
++++||+||. ++|++|+|||+++.+||++++++ .+|+.||.|+|++.+..+ ..+.+.+++..+|...+..+.
T Consensus 8 aG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 84 (493)
T TIGR02730 8 SGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLETIPD-- 84 (493)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcccccCC--
Confidence 4569999986 68999999999999999999999 599999999999853210 012566778777754333321
Q ss_pred CCCCCcceEEEeCCeEEECCCChhhhcccC---CCCCHHHHHHHHHH---hhc--------CCC----------------
Q psy7666 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTH---SPFSKPLIFSILHD---LTT--------KTV---------------- 206 (350)
Q Consensus 157 ~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~---~~l~~~~~~~~l~~---~~~--------~~~---------------- 206 (350)
.....+.+.+|....++.+.......+ .+-....+.+++.. .+. +..
T Consensus 85 ---~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (493)
T TIGR02730 85 ---PVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLAC 161 (493)
T ss_pred ---CccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhh
Confidence 111233344565555555432111110 11111111111111 000 000
Q ss_pred ----CCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccC-CcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCC
Q psy7666 207 ----PKSDESIYDFVSRRFGSEVADYAVSSMICGICAG-DAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSG 281 (350)
Q Consensus 207 ----~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~-~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~ 281 (350)
.....|+.+++++.|.++.++.++...+. .++. ++.+.++... .+. + .
T Consensus 162 ~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~-~~~~~p~~~~p~~~~----------------~~~--~-~------- 214 (493)
T TIGR02730 162 LGLAKYLPQNAGDIARRYIRDPGLLKFIDIECF-CWSVVPADQTPMINA----------------GMV--F-S------- 214 (493)
T ss_pred hHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHH-hccCCCcccchhhhH----------------HHh--h-c-------
Confidence 00124455555554444444444332111 1121 1122221110 000 0 0
Q ss_pred cchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCceec
Q psy7666 282 YEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQMT 349 (350)
Q Consensus 282 ~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~~ 349 (350)
.....+++++.||++.++++|++.+. .|++|+++++|++|..++++ +.|.+.+|++++
T Consensus 215 ----------~~~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ 274 (493)
T TIGR02730 215 ----------DRHYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIY 274 (493)
T ss_pred ----------ccccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEE
Confidence 00123578899999999999999999 89999999999999987664 567777887654
No 29
>KOG0029|consensus
Probab=99.59 E-value=2.2e-14 Score=143.38 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=60.1
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCc
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ 150 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~ 150 (350)
++|||| |||+||. ..|++|+||||+||+|||++|++..++..+|+|++|+++.+. |++.-+.+++|++..
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~--npl~~l~~qlgl~~~ 92 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYN--NPLALLSKQLGLELY 92 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCc--cHHHHHHHHhCcccc
Confidence 456555 9999998 579999999999999999999995455569999999998873 689999999999763
No 30
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=2.3e-14 Score=140.26 Aligned_cols=214 Identities=16% Similarity=0.189 Sum_probs=140.9
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH 158 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~ 158 (350)
|++|||+||+ .+|++||||||++++||.+.|++..||.+.|+|-|.|.+.|+ +++.++++++.++.+..-.
T Consensus 8 aG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~---n~~~ll~~~~~~~~~~~~~--- 81 (485)
T COG3349 8 AGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYY---NLLTLLKELPIEDRLQLRE--- 81 (485)
T ss_pred ccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHH---HHHHHhhhCCchheeehHh---
Confidence 4469999998 689999999999999999999998899999999999999987 9999999999876444311
Q ss_pred CCCcceEEE---eCCeEEEC-------CCC-hhhhcccCCCCCHHHHHHHHHHhh-------cCCCCCCCCcHHHHHHHh
Q psy7666 159 PTAQNRLIY---VNKKLHKL-------PSN-FFSLFKTHSPFSKPLIFSILHDLT-------TKTVPKSDESIYDFVSRR 220 (350)
Q Consensus 159 p~~~~~~i~---~~g~~~~~-------p~~-~~~~~~~~~~l~~~~~~~~l~~~~-------~~~~~~~~~Sv~~~l~~~ 220 (350)
....++- .+|..-++ |.. +..++.. +.+.++++.+++.... +...+.++.|+.|||++.
T Consensus 82 --~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~ 158 (485)
T COG3349 82 --HTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRL-PQLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEK 158 (485)
T ss_pred --hhhhhcccCCCCCcccccccCCCCCcchhhhhhhhc-cccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHh
Confidence 0111111 12222112 111 1122222 3344444444333221 112357899999999984
Q ss_pred -hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEE
Q psy7666 221 -FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVW 299 (350)
Q Consensus 221 -~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 299 (350)
-........+.|++......+++..|++..+..+..+. + .+. +..-..
T Consensus 159 g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~----------~----~~~-----------------~~~i~~ 207 (485)
T COG3349 159 GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFL----------I----VTL-----------------EASILR 207 (485)
T ss_pred CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHH----------H----hcc-----------------Ccchhh
Confidence 44666777888888777778889999866544332211 0 000 000123
Q ss_pred EecCcHH-HHHHHHHHhhc-CCCEEEeCcceeEEEEeC
Q psy7666 300 SVEGGLQ-TIVNTLGEHLS-NKVEVKMDTTCTNLEFLE 335 (350)
Q Consensus 300 ~~~GG~~-~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~ 335 (350)
.+.|+.. .+...+.+.++ .|.+++...+|+.|..+.
T Consensus 208 ~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~ 245 (485)
T COG3349 208 NLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDG 245 (485)
T ss_pred hhcCCCcceeeehhhhhccccCceeeccceeeeeeccc
Confidence 3455533 37778888898 899999999999998875
No 31
>PLN02976 amine oxidase
Probab=99.50 E-value=5.2e-13 Score=143.53 Aligned_cols=257 Identities=19% Similarity=0.231 Sum_probs=137.1
Q ss_pred ccccccccccccccCCCCCCCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecC
Q psy7666 58 FKFQDCHCETSIQKRPFPPDLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRP 130 (350)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~ 130 (350)
+.++..+|... +.... ++|+|| +||+||. +.|++|+|||+++++|||+++.+...|+.+|+|++|+++
T Consensus 678 ~~~~~~~~~~~----~~~~~-~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G 752 (1713)
T PLN02976 678 IEMGGNHCVLC----DSVDR-KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITG 752 (1713)
T ss_pred HhcCCCCCccC----CcCCC-CcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEec
Confidence 45555666544 22222 345554 9999986 579999999999999999999874368999999999986
Q ss_pred CCC------CchHHHHHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHh---
Q psy7666 131 KGR------LGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDL--- 201 (350)
Q Consensus 131 ~~~------~~~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~--- 201 (350)
... ..+++..+++++|+...... .. ...|...+|+ .+|......+. ..+.+++...
T Consensus 753 ~~~nv~~~r~~np~~~la~qlGl~l~~~~-----~~-~~~yd~~~G~--~V~~e~~~~v~-------~~fn~lld~~~~~ 817 (1713)
T PLN02976 753 VEADVATERRPDPSSLICAQLGLELTVLN-----SD-CPLYDVVTGE--KVPADLDEALE-------AEYNSLLDDMVLL 817 (1713)
T ss_pred ccccccccccccHHHHHHHhcCCcccccc-----CC-CceeEccCCc--CCCHHHHHHHH-------HHHHHHHHHHHHH
Confidence 421 01245568899999653222 11 1122223444 23332211100 0111222211
Q ss_pred hcC-CCCCCCCcHHHHHHHhhChHH----------------HHHHHHHhhhhcccCCcccccHHHHHHHHHHH------H
Q psy7666 202 TTK-TVPKSDESIYDFVSRRFGSEV----------------ADYAVSSMICGICAGDAKKISVNFLMAKLFEL------E 258 (350)
Q Consensus 202 ~~~-~~~~~~~Sv~~~l~~~~~~~~----------------~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~------~ 258 (350)
... .....+.|+++||...+.... .+.+.......+.+...+..+....+...... .
T Consensus 818 ~~~~g~~a~d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~ 897 (1713)
T PLN02976 818 VAQKGEHAMKMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFA 897 (1713)
T ss_pred HhhcccCccCCCHHHHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHH
Confidence 111 122457899999986442110 00111111122333444444433322111100 0
Q ss_pred Hh-c--cchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEe-
Q psy7666 259 QL-H--GGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFL- 334 (350)
Q Consensus 259 ~~-~--gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~- 334 (350)
.. + +.-+.-+....+. +...|. .. ....+.+.|||++|+++|++.| .|+||++|++|.+.
T Consensus 898 ~lE~~~aa~L~eVSl~~~~---------qd~~y~--~f-gG~~~rIkGGYqqLIeALAe~L----~IrLNtpVtrId~s~ 961 (1713)
T PLN02976 898 HLEYGCAALLKEVSLPYWN---------QDDVYG--GF-GGAHCMIKGGYSNVVESLAEGL----DIHLNHVVTDVSYGS 961 (1713)
T ss_pred hhcccccCCHHHhhhhhhh---------cccccc--cC-CCceEEeCCCHHHHHHHHHhhC----CeecCCeEEEEEecC
Confidence 00 0 0000000000000 000010 01 2246779999999999999987 39999999999994
Q ss_pred ---------CCeEEEEeCCCceecC
Q psy7666 335 ---------EKGVKAVDQPIHQMTK 350 (350)
Q Consensus 335 ---------~~gv~V~~~~G~~~~~ 350 (350)
+++|.|++.+|+++++
T Consensus 962 ~d~~~~~s~~dGVtVtTsDGetftA 986 (1713)
T PLN02976 962 KDAGASGSSRKKVKVSTSNGSEFLG 986 (1713)
T ss_pred CcccccccCCCcEEEEECCCCEEEe
Confidence 3579999999987753
No 32
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.50 E-value=5.6e-13 Score=128.99 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=140.2
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEE-ecCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIF-EKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS 157 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~-D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~ 157 (350)
|++|||++|+ +.|.+|+|+|+++++||++.+.. .+|..+ +.|+|+++...+ .+++++.++- + +..
T Consensus 9 aG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~---~v~~~~~~~~-~--~~~---- 77 (377)
T TIGR00031 9 AGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQ---YVWDYISPFF-E--LNN---- 77 (377)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcH---HHHHHHHhhc-c--ccc----
Confidence 4559999987 46999999999999999999987 466554 899999987665 7888888762 1 111
Q ss_pred CCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHH---HHhhChHHHHHHHHHhh
Q psy7666 158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFV---SRRFGSEVADYAVSSMI 234 (350)
Q Consensus 158 ~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l---~~~~~~~~~~~~~~pl~ 234 (350)
......++.+|+.+++|-.+-.+...............+..........+..++.+|. .+.||+.+.+.++.|+.
T Consensus 78 --~~~~~~~~~~g~~~~~P~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~G~~lye~ff~~Yt 155 (377)
T TIGR00031 78 --YQHRVLALYNNLDLTLPFNFNQFRKLLGVKDAQELQNFFNAQFKYGDHVPLEELQEIADPDIQLLYQFLYQKVYKPYT 155 (377)
T ss_pred --eeEEEEEEECCeEEccCCCHHHHHHhcccchHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 1123567889999999876432322111111111222222211110111224566665 88899999999999999
Q ss_pred hhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHH
Q psy7666 235 CGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGE 314 (350)
Q Consensus 235 ~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~ 314 (350)
..+|+.+++++++.++- .+. + . + . .+.. | ....-+..|++|+.+++++|++
T Consensus 156 ~K~Wg~~p~el~~~~~~-RvP--------~-~--~-~-----------~d~~-y----f~d~~q~~P~~Gyt~~~~~ml~ 206 (377)
T TIGR00031 156 VKQWGLPAEEIDPFVIG-RVP--------V-V--L-S-----------EDSS-Y----FPDRYQGLPKGGYTKLFEKMLD 206 (377)
T ss_pred ceeeCCChHHCCHHHeE-ecc--------e-E--e-c-----------CCCC-c----ccccccccccccHHHHHHHHHh
Confidence 99999999999987752 110 0 0 0 0 0000 0 1111257799999999999998
Q ss_pred hhcCCCEEEeCcceeEEEEeCCeEEE
Q psy7666 315 HLSNKVEVKMDTTCTNLEFLEKGVKA 340 (350)
Q Consensus 315 ~L~~g~~I~l~~~V~~I~~~~~gv~V 340 (350)
+- +.+|+||+.+..+..++++|.+
T Consensus 207 ~~--~i~v~l~~~~~~~~~~~~~~~~ 230 (377)
T TIGR00031 207 HP--LIDVKLNCHINLLKDKDSQLHF 230 (377)
T ss_pred cC--CCEEEeCCccceeeccccceee
Confidence 74 4789999988888765554544
No 33
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.49 E-value=1.3e-12 Score=131.25 Aligned_cols=210 Identities=19% Similarity=0.186 Sum_probs=125.3
Q ss_pred ceeeh----hhHhHhhh---c----CCCCEEEEecCCCCCcceEEEec-CCCeEEecCCceecCCCCCchHHHHHHHHcC
Q psy7666 79 LLLLV----IRILCTVL---R----ISTPITLLESSSRLGGWVRSVQS-PEGLIFEKGPRTIRPKGRLGANTLKLVEDLG 146 (350)
Q Consensus 79 ~~v~v----iaGLaaA~---~----~G~~VtVlEa~drvGGRi~T~~~-~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elG 146 (350)
++++| |||||||+ + .|++|+|||+.+++||++.++.. .+|+.+|.|++. ...++ +++++++++.
T Consensus 23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~~y~---~l~~ll~~ip 98 (576)
T PRK13977 23 KKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-ENHFE---CLWDLFRSIP 98 (576)
T ss_pred CeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cchHH---HHHHHHHhcc
Confidence 55554 49999996 3 37899999999999999998542 479999999875 55555 8999998874
Q ss_pred CCC--------cccccCCCCCCCc-ceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHH
Q psy7666 147 LAD--------QVIPITSSHPTAQ-NRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFV 217 (350)
Q Consensus 147 l~~--------~l~~~~~~~p~~~-~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l 217 (350)
-.+ +....+..+|... .+++..+|.....+. -.+.......++..++.+....++.++.||+
T Consensus 99 sle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~~~---------~~L~~k~r~~Ll~l~l~~e~~Ld~~tI~d~f 169 (576)
T PRK13977 99 SLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDTDK---------FGLSKKDRKELLKLLLTPEEKLDDKTIEDWF 169 (576)
T ss_pred ccCCCCcccccceeeeecCCcccceeeEEcCCCCEEECcC---------CCCCHHHHHHHHHHhccCHHHhCCcCHHHHH
Confidence 211 1111111111110 122222232211110 1233334445555555544568899999999
Q ss_pred HHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccce
Q psy7666 218 SRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWS 297 (350)
Q Consensus 218 ~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 297 (350)
.++|-...+..++.+++ +-. +..||.-....+..+......+ + ...+
T Consensus 170 ~~~Ff~t~Fw~~w~t~F----aF~-~whSA~E~rry~~rf~~~~~~l------------~----------------~~s~ 216 (576)
T PRK13977 170 SPEFFETNFWYYWRTMF----AFE-KWHSALEMRRYMHRFIHHIGGL------------P----------------DLSG 216 (576)
T ss_pred hhcCchhHHHHHHHHHH----CCc-hhhHHHHHHHHHHHHHHhhccC------------C----------------cccc
Confidence 99876655556666654 333 5566655433333221110000 0 0001
Q ss_pred E-EEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEe
Q psy7666 298 V-WSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFL 334 (350)
Q Consensus 298 ~-~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~ 334 (350)
+ +..-.=+++|+..|.+.|. .|++|++|++|++|..+
T Consensus 217 l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~ 255 (576)
T PRK13977 217 LKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFD 255 (576)
T ss_pred ccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEc
Confidence 1 1111225889999999999 99999999999999985
No 34
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.24 E-value=1.1e-11 Score=90.64 Aligned_cols=62 Identities=27% Similarity=0.426 Sum_probs=52.4
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDL 145 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~el 145 (350)
+.+|||+||+ ++|++|+|||+++++||++.+... +|+.+|.|++++.+..+ ..++.+++++|
T Consensus 4 aG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~-~~~~~~l~~~L 68 (68)
T PF13450_consen 4 AGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPDD-YPNLFRLLREL 68 (68)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETTS-CHHHHHHHHTT
T ss_pred eCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCCC-chHHHHHHcCC
Confidence 6789999998 679999999999999999999995 89999999999976321 34899999875
No 35
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.07 E-value=1.5e-09 Score=100.37 Aligned_cols=211 Identities=14% Similarity=0.202 Sum_probs=136.5
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecC-CCeEEec-CCceecCCCCCchHHHHHHHHcCCCCcccccCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSP-EGLIFEK-GPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~-~G~~~D~-Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~ 156 (350)
|+++|+..|. ++|++|.|+|+++.+||.+.+.... .|..|-. |||+||..+. .+++++..+- ++-+
T Consensus 9 aGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~---~Vwdyv~~F~---e~~~--- 79 (374)
T COG0562 9 AGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNK---RVWDYVNQFT---EFNP--- 79 (374)
T ss_pred CchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCch---HHHHHHhhhh---hhhh---
Confidence 5567777766 5799999999999999999998842 5766654 9999998876 9999998762 1111
Q ss_pred CCCCCcceEEEeCCeEEECCCChhhhcccCC-CCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChHHHHHHHHHhhh
Q psy7666 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHS-PFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMIC 235 (350)
Q Consensus 157 ~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~-~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~ 235 (350)
-....+-+.+|..+++|.++-.+-.... ..+......++.+.-......+..++.+=.-+.+|+.+.+.++.++..
T Consensus 80 ---Y~hrVla~~ng~~~~lP~nl~ti~ql~G~~~~p~~a~~~i~~~~~~~~~~~~q~~ee~ais~vg~~LY~~f~kgYT~ 156 (374)
T COG0562 80 ---YQHRVLALVNGQLYPLPFNLNTINQLFGKNFTPDEARKFIEEQAAEIDIAEPQNLEEQAISLVGRDLYEAFFKGYTE 156 (374)
T ss_pred ---hccceeEEECCeeeeccccHHHHHHHhCccCCHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhccccH
Confidence 1122355679999999987543322211 222222222222211111223455666666667889999999999999
Q ss_pred hcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHh
Q psy7666 236 GICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEH 315 (350)
Q Consensus 236 ~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~ 315 (350)
..||.+++++.+..+ ..+. +.... +++ +-.+.| ..-|++|+-++++.|+++
T Consensus 157 KQWG~~p~eLpasvi-~RvP--------Vr~~~-----dn~------YF~d~y---------QGlP~~GYT~~~~kMl~h 207 (374)
T COG0562 157 KQWGLDPKELPASVI-KRLP--------VRLNF-----DNR------YFSDTY---------QGLPKDGYTAMFEKMLDH 207 (374)
T ss_pred HHhCCChHHCCHHHh-cccc--------eEEcc-----cCc------ccCccc---------ccCccccHHHHHHHHhcC
Confidence 999999999987543 1110 00000 000 001111 345899999999999986
Q ss_pred hcCCCEEEeCcceeEEEEeC
Q psy7666 316 LSNKVEVKMDTTCTNLEFLE 335 (350)
Q Consensus 316 L~~g~~I~l~~~V~~I~~~~ 335 (350)
= +.+|+||+.-..|....
T Consensus 208 p--~I~V~Lntd~~~~~~~~ 225 (374)
T COG0562 208 P--NIDVRLNTDFFDVKDQL 225 (374)
T ss_pred C--CceEEecCcHHHHhhhh
Confidence 3 47899999888776653
No 36
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.63 E-value=7e-06 Score=80.94 Aligned_cols=221 Identities=14% Similarity=0.160 Sum_probs=127.4
Q ss_pred hHhhh-cCCCCEEEEecCCCCCcceEEEec--------------------CCCeEEecCCceecCCCCCchHHHHHHHHc
Q psy7666 87 LCTVL-RISTPITLLESSSRLGGWVRSVQS--------------------PEGLIFEKGPRTIRPKGRLGANTLKLVEDL 145 (350)
Q Consensus 87 LaaA~-~~G~~VtVlEa~drvGGRi~T~~~--------------------~~G~~~D~Ga~~~~~~~~~~~~l~~l~~el 145 (350)
||+|+ +.|.+|..+++++..||...|... ...|.+|+-|..++... .+.+++-+-
T Consensus 19 la~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~a~g----~LV~lLi~S 94 (438)
T PF00996_consen 19 LAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLYARG----PLVKLLISS 94 (438)
T ss_dssp HHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEETTS----HHHHHHHHC
T ss_pred HHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhhccC----HHHHHHHhC
Confidence 34555 789999999999999999999873 12478999999998775 788999888
Q ss_pred CCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHH---HHHHHHHhh---c--C--CC--CCCCCcH
Q psy7666 146 GLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPL---IFSILHDLT---T--K--TV--PKSDESI 213 (350)
Q Consensus 146 Gl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~---~~~~l~~~~---~--~--~~--~~~~~Sv 213 (350)
|+...+.+. .-...|+|.+|+++.+|.+-.++++. +.++.-+ +.+++.... . + +. .....++
T Consensus 95 ~V~rYLEFk-----~V~~~~v~~~~~l~kVP~sr~dvf~s-~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~~~~~~~~~ 168 (438)
T PF00996_consen 95 GVTRYLEFK-----AVDGSYVYKNGKLHKVPCSREDVFKS-KLLSLFEKRRLMKFLKFVANYEEDDPSTHKGLDPEKKTF 168 (438)
T ss_dssp TGGGGSEEE-----EESEEEEEETTEEEE--SSHHHHHC--TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTTG-TTTSBH
T ss_pred CcccceEEE-----EcceeEEEeCCEEeeCCCCHHHhhcC-CCccHHHHHHHHHHHHHHhhcccCCcchhhccccccccH
Confidence 886544332 11357889999999999987666665 3444323 333333221 1 1 11 2346899
Q ss_pred HHHHHHh-hChHHHHHHHHHhhhhcccCCcc-cccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhh
Q psy7666 214 YDFVSRR-FGSEVADYAVSSMICGICAGDAK-KISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRS 291 (350)
Q Consensus 214 ~~~l~~~-~~~~~~~~~~~pl~~~~~~~~~~-~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~ 291 (350)
.+++.+. +.+...+.+...+. ++..+.. +.++...++.+..+..+.|.
T Consensus 169 ~e~~~~f~L~~~~~~~i~haia--L~~~~~~~~~p~~~~l~ri~~yl~Slgr---------------------------- 218 (438)
T PF00996_consen 169 QELLKKFGLSENLIDFIGHAIA--LSLDDSYLTEPAREGLERIKLYLSSLGR---------------------------- 218 (438)
T ss_dssp HHHHHHTTS-HHHHHHHHHHTS---SSSSGGGGSBSHHHHHHHHHHHHHHCC----------------------------
T ss_pred HHHHHhcCCCHHHHHHHHHhhh--hccCcccccccHHHHHHHHHHHHHHHhc----------------------------
Confidence 9999642 44555544433322 2222221 22444555555443221110
Q ss_pred hcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe--EEEEeCCCceec
Q psy7666 292 RIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG--VKAVDQPIHQMT 349 (350)
Q Consensus 292 ~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g--v~V~~~~G~~~~ 349 (350)
.....+.++..|.+.|++++++.-. -|+...||++|.+|..++++ +.|.. +|++++
T Consensus 219 -yG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~ 277 (438)
T PF00996_consen 219 -YGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVK 277 (438)
T ss_dssp -CSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEE
T ss_pred -cCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEE
Confidence 1112478899999999999998877 78999999999999996554 33544 776654
No 37
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.51 E-value=1.1e-07 Score=86.40 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=53.6
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLG 146 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elG 146 (350)
++|+||+||+ .+|++|||||++.-+|||+.|.+. +|.++|.|++.|.+..+ .++++++.+.
T Consensus 9 aGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl-~~g~~DhGAqYfk~~~~---~F~~~Ve~~~ 72 (331)
T COG3380 9 AGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRL-DGGRFDHGAQYFKPRDE---LFLRAVEALR 72 (331)
T ss_pred cchHHHHHHHHHHhcCcEEEEEEcCCCcccchheecc-CCccccccceeecCCch---HHHHHHHHHH
Confidence 5679999998 589999999999999999999994 78889999999998876 7887777664
No 38
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.21 E-value=1.8e-05 Score=78.11 Aligned_cols=208 Identities=19% Similarity=0.189 Sum_probs=112.8
Q ss_pred ehhhHhHhhh---c----CCCCEEEEecCCCCCcceEEEec-CCCeEEecCCceecCCCCCchHHHHHHHHcCCC-----
Q psy7666 82 LVIRILCTVL---R----ISTPITLLESSSRLGGWVRSVQS-PEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLA----- 148 (350)
Q Consensus 82 ~viaGLaaA~---~----~G~~VtVlEa~drvGGRi~T~~~-~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~----- 148 (350)
.+||+||||. + .|.+++|||+.+..||-+.+.-. ..||.+=-|-. +...+. .+++|++.+=-.
T Consensus 10 sGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~-~~~~~e---clwdLls~IPSle~p~~ 85 (500)
T PF06100_consen 10 SGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRM-MEFHYE---CLWDLLSSIPSLEDPGK 85 (500)
T ss_pred CCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCcc-ccchhH---HHHHHHHhCCCCCCCCC
Confidence 5689999986 2 48999999999999999988653 35765544433 334443 777777765310
Q ss_pred ---CcccccCCCCCCCc-ceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhh-Ch
Q psy7666 149 ---DQVIPITSSHPTAQ-NRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRF-GS 223 (350)
Q Consensus 149 ---~~l~~~~~~~p~~~-~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~-~~ 223 (350)
+++...+...|... .+++..+|+....... -.|+..+...+++-++.+...+++.++.||+...| ..
T Consensus 86 SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~~~~--------~~Ls~k~r~eL~kL~l~~E~~L~~~~I~d~F~~~FF~S 157 (500)
T PF06100_consen 86 SVLDEIYWFNKEDPNYSKARLIDKRGQIVDTDSK--------FGLSEKDRMELIKLLLTPEEDLGDKRIEDWFSESFFES 157 (500)
T ss_pred cHHHHHHHhccCCCCCcceeeeccCCccccccCc--------CCCCHHHHHHHHHHhcCCHHHhCcccHHHhcchhhhcC
Confidence 11111111223222 2333334442211110 12344445555555555555678889999988763 33
Q ss_pred HHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecC
Q psy7666 224 EVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEG 303 (350)
Q Consensus 224 ~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~G 303 (350)
.++ .+|.. .++-.+.. |+.-.-..+.++......+ +. . ..-.++.-.
T Consensus 158 nFW-~~W~T----~FAFqpWh-Sa~E~rRyl~Rf~h~~~~l------------~~--------------l-~~l~~T~YN 204 (500)
T PF06100_consen 158 NFW-YMWST----MFAFQPWH-SAVEFRRYLHRFIHEIPGL------------ND--------------L-SGLDRTKYN 204 (500)
T ss_pred chh-HhHHH----hhccCcch-hHHHHHHHHHHHHHhcCCC------------CC--------------c-cccccCccc
Confidence 333 23333 33444333 2211111111111111000 00 0 000111223
Q ss_pred cHHHHHHHHHHhhc-CCCEEEeCcceeEEEEe
Q psy7666 304 GLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFL 334 (350)
Q Consensus 304 G~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~ 334 (350)
=+++|+..|.+.|. +||++++|+.|+.|..+
T Consensus 205 QyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~ 236 (500)
T PF06100_consen 205 QYESIILPLIRYLKSQGVDFRFNTKVTDIDFD 236 (500)
T ss_pred cHHHHHHHHHHHHHHCCCEEECCCEEEEEEEE
Confidence 37899999999999 99999999999999986
No 39
>KOG4254|consensus
Probab=98.11 E-value=6.1e-05 Score=73.11 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=49.5
Q ss_pred cceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCceec
Q psy7666 295 KWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQMT 349 (350)
Q Consensus 295 ~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~~ 349 (350)
..++.|+.|||+.+.+++++.+. .|++|.+++.|++|.-+++. +-|..+||+++.
T Consensus 253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~ 309 (561)
T KOG4254|consen 253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVR 309 (561)
T ss_pred CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEE
Confidence 45789999999999999999999 99999999999999998765 678999998874
No 40
>KOG1439|consensus
Probab=97.94 E-value=0.00012 Score=70.20 Aligned_cols=222 Identities=11% Similarity=0.131 Sum_probs=129.3
Q ss_pred Hhhh-cCCCCEEEEecCCCCCcceEEEec-------C-------------CCeEEecCCceecCCCCCchHHHHHHHHcC
Q psy7666 88 CTVL-RISTPITLLESSSRLGGWVRSVQS-------P-------------EGLIFEKGPRTIRPKGRLGANTLKLVEDLG 146 (350)
Q Consensus 88 aaA~-~~G~~VtVlEa~drvGGRi~T~~~-------~-------------~G~~~D~Ga~~~~~~~~~~~~l~~l~~elG 146 (350)
++++ ..|.+|..+++++..||-..|... . ..+.+|+=|..++... .+..++-+-|
T Consensus 20 S~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lmAn~----~Lvk~Li~T~ 95 (440)
T KOG1439|consen 20 SGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLMANG----ELVKILIHTG 95 (440)
T ss_pred eeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhhccc----hHHHHHHHhc
Confidence 4444 579999999999999998888753 0 1356777777776654 5777777778
Q ss_pred CCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhccc--CCCCCHHHHHHHHHH---hhc----CCCC--CCCCcHHH
Q psy7666 147 LADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKT--HSPFSKPLIFSILHD---LTT----KTVP--KSDESIYD 215 (350)
Q Consensus 147 l~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~--~~~l~~~~~~~~l~~---~~~----~~~~--~~~~Sv~~ 215 (350)
+...+... .....++|.+|+.+.+|..-..+++. +.++.++.+.+++.- +.. .+.. ....++.+
T Consensus 96 V~~YL~fk-----~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~~~~~k~tm~~ 170 (440)
T KOG1439|consen 96 VTRYLEFK-----SISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQGYDLSKDTMRE 170 (440)
T ss_pred hhhheEEE-----eecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccccccccchHHH
Confidence 75533332 12457889999999999876555543 122233433443332 111 1111 22347888
Q ss_pred HHHHh-hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcc
Q psy7666 216 FVSRR-FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIE 294 (350)
Q Consensus 216 ~l~~~-~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~ 294 (350)
++.+- ......+.. ...+......+.-+..+.-.+..+..+..+ + +. | .
T Consensus 171 ~~~~~~l~~~~~~f~-gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S---~--~~-------------------y-----g 220 (440)
T KOG1439|consen 171 FLGKFGLLEGTIDFI-GHAIALLCDDSYLDQPAKETLERILLYVRS---F--AR-------------------Y-----G 220 (440)
T ss_pred HHHHhcccccceeee-eeeeEEEecchhccCccHHHHHHHHHHHHH---H--hh-------------------c-----C
Confidence 88653 223333221 111222222222222333333333322211 0 00 0 1
Q ss_pred cceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666 295 KWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM 348 (350)
Q Consensus 295 ~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~ 348 (350)
.....++..|++.|++..++.-. -|++..||+|+..|....++..+...+|...
T Consensus 221 ~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v 275 (440)
T KOG1439|consen 221 KSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEV 275 (440)
T ss_pred CCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCce
Confidence 11257799999999999998776 8999999999999999655655555555443
No 41
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.016 Score=55.38 Aligned_cols=210 Identities=14% Similarity=0.202 Sum_probs=127.4
Q ss_pred hHhHhhh-cCCCCEEEEecCCCCCcceEEEec-------------------CCCeEEecCCceecCCCCCchHHHHHHHH
Q psy7666 85 RILCTVL-RISTPITLLESSSRLGGWVRSVQS-------------------PEGLIFEKGPRTIRPKGRLGANTLKLVED 144 (350)
Q Consensus 85 aGLaaA~-~~G~~VtVlEa~drvGGRi~T~~~-------------------~~G~~~D~Ga~~~~~~~~~~~~l~~l~~e 144 (350)
+=|+||+ -+|.+|.+++++|..|+-..|... ...+.+|+=|..|.... .+..++-+
T Consensus 19 sils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A~s----~l~~iLi~ 94 (434)
T COG5044 19 SILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFANS----ELLKILIE 94 (434)
T ss_pred HHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcccc----hHHHHHHH
Confidence 5566676 479999999999999999888763 01256777788776654 68888888
Q ss_pred cCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhccc--CCCCCHHHHHHHHHH---hhc---CCCC-CCCCcHHH
Q psy7666 145 LGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKT--HSPFSKPLIFSILHD---LTT---KTVP-KSDESIYD 215 (350)
Q Consensus 145 lGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~--~~~l~~~~~~~~l~~---~~~---~~~~-~~~~Sv~~ 215 (350)
-|+..-+... ...+.++|.+|+.+.+|..-..++.. +.++.++...+++.- +.. .+.. ..+.+..+
T Consensus 95 t~v~~YLefk-----~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~~~~~~~~~~e~k~~~~ 169 (434)
T COG5044 95 TGVTEYLEFK-----QISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAEQKSTLQELYESKDTME 169 (434)
T ss_pred hChHhheeee-----eccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHhhhhhchhhhhcccHHH
Confidence 8886533332 12357888899999999875555543 122333433444321 111 1111 22355778
Q ss_pred HHHHhhC--hHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhc
Q psy7666 216 FVSRRFG--SEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRI 293 (350)
Q Consensus 216 ~l~~~~~--~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~ 293 (350)
++.+.|+ ....+.+...++-.. + -+..++-++..+..+.++++ .. +
T Consensus 170 ~~~ekf~L~~~~~e~i~~~i~l~l---d-l~~p~re~~erIl~Y~~Sf~-----~y----g------------------- 217 (434)
T COG5044 170 FLFEKFGLSGATEEFIGHGIALSL---D-LDIPAREALERILRYMRSFG-----DY----G------------------- 217 (434)
T ss_pred HHHHHHccCcchhhhhhhhhhhhc---c-ccCCchHHHHHHHHHHHhhc-----cc----C-------------------
Confidence 8877766 222222222222111 1 23334444444443322211 10 1
Q ss_pred ccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC
Q psy7666 294 EKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK 336 (350)
Q Consensus 294 ~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~ 336 (350)
.....++.-|++.|.+..++.-. .|++..||+++..|.....
T Consensus 218 -~~pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk~ 260 (434)
T COG5044 218 -KSPYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKD 260 (434)
T ss_pred -CCcceeeccCchhhhHHHHHhhhccCceeecCcchhhhccccc
Confidence 11356788889999999998877 8999999999999977655
No 42
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.01 E-value=0.009 Score=57.19 Aligned_cols=210 Identities=18% Similarity=0.202 Sum_probs=111.8
Q ss_pred ehhhHhHhhh-------cCCCCEEEEecCCCCCcceEEEec-CCCeEEecCCceecCCCCCchHHHHHHHHcC---CCC-
Q psy7666 82 LVIRILCTVL-------RISTPITLLESSSRLGGWVRSVQS-PEGLIFEKGPRTIRPKGRLGANTLKLVEDLG---LAD- 149 (350)
Q Consensus 82 ~viaGLaaA~-------~~G~~VtVlEa~drvGGRi~T~~~-~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elG---l~~- 149 (350)
+++||||+|. -.|-++.++|.-.-.||-...... ..||++- |+.-+-.... .+++|++.+- ++.
T Consensus 30 ~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~R-GGRemEnhfE---c~WDlfrsIPSLei~na 105 (587)
T COG4716 30 GGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVR-GGREMENHFE---CLWDLFRSIPSLEIPNA 105 (587)
T ss_pred cchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeec-CcHHHHHHHH---HHHHHHhcCccccCCCc
Confidence 4569999996 258999999999999998655431 2566554 3333333343 6788887642 221
Q ss_pred ----cccccCCCCCCCcce-EEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChH
Q psy7666 150 ----QVIPITSSHPTAQNR-LIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSE 224 (350)
Q Consensus 150 ----~l~~~~~~~p~~~~~-~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~ 224 (350)
++.+.+..+|...+. .+..+|+... ..+-. .+.......++.-+..+....++.++.||+..+|-.+
T Consensus 106 SvldEfy~~d~~dPn~s~cRli~k~g~rv~-ddg~~-------tl~~~~~~ei~kL~~t~EE~L~~~tI~d~Fse~FF~s 177 (587)
T COG4716 106 SVLDEFYWLDKDDPNSSNCRLIHKRGRRVD-DDGSF-------TLNNKARKEIIKLLMTPEEKLDDLTIEDWFSEDFFKS 177 (587)
T ss_pred HHHHHHHhccCCCCCccceeeeeccccccc-ccccc-------ccChhhHHHHHHHHcCcHHhcCCccHHHhhhHhhhhh
Confidence 344444455554433 3334444211 11100 1222222333333334445688999999999875433
Q ss_pred HHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCc
Q psy7666 225 VADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGG 304 (350)
Q Consensus 225 ~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG 304 (350)
-+=.||..+++- .... |+ .-+..... + ++.+ +..-+ + ..+ --++.-.-
T Consensus 178 NFW~yW~tmFAF----ekWh-Sa-~EmRRY~m---------R-fihh-i~gl~------d--------fs~-lkftkyNQ 225 (587)
T COG4716 178 NFWYYWQTMFAF----EKWH-SA-FEMRRYMM---------R-FIHH-ISGLP------D--------FSA-LKFTKYNQ 225 (587)
T ss_pred hHHHHHHHHHhh----hHHH-HH-HHHHHHHH---------H-HHHH-hcCCC------c--------chh-hcccccch
Confidence 332455543321 1110 11 11111100 0 0000 00000 0 000 01334456
Q ss_pred HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeC
Q psy7666 305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLE 335 (350)
Q Consensus 305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~ 335 (350)
+++|+..|..-|. .|+.+.+++.|+.|..+.
T Consensus 226 YeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~ 257 (587)
T COG4716 226 YESLVLPLITYLKSHGVDFTYDQKVEDIDVDD 257 (587)
T ss_pred HHHHHHHHHHHHHHcCCceEeccEEeeeeecc
Confidence 8999999999999 899999999999998763
No 43
>KOG0399|consensus
Probab=96.36 E-value=0.0028 Score=67.77 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=31.0
Q ss_pred Cceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 78 LLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 78 ~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
-++|||| |||+||- ++||-|+|||++||+||..+-
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 4789999 9999996 689999999999999998753
No 44
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.28 E-value=0.0036 Score=62.78 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=29.2
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
++|||| |||+||. +.|++|+|||+++.+||...-
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 567776 9999986 679999999999999998754
No 45
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.10 E-value=0.004 Score=67.62 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=30.6
Q ss_pred Cceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 78 LLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 78 ~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
-++|||| |||+||+ ++|++|||||+.+++||.++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 3779988 9999998 68999999999999999875
No 46
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.95 E-value=0.0084 Score=60.43 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=29.7
Q ss_pred ceeehh----hHhHhhh---c--CCCCEEEEecCCCCCcceEE
Q psy7666 79 LLLLVI----RILCTVL---R--ISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~--~G~~VtVlEa~drvGGRi~T 112 (350)
++|||| |||+||. + .|++|+|||+.+.+||.++.
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 678888 9999996 2 59999999999999998874
No 47
>KOG1399|consensus
Probab=95.89 E-value=0.0066 Score=60.39 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=29.5
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSV 113 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~ 113 (350)
++|||| |||+||. +.|++|+|||+++.+||..+--
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 456655 9999987 6799999999999999987654
No 48
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=95.85 E-value=0.022 Score=55.39 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=67.6
Q ss_pred CCcHHHHHHHh-hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHH
Q psy7666 210 DESIYDFVSRR-FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELY 288 (350)
Q Consensus 210 ~~Sv~~~l~~~-~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y 288 (350)
..|..+||.++ ++..+.+.++.+.++..||.+. ++++. .|+. .+ ..
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~-----------------~G~v-Sl-a~------------- 115 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHAF-----------------AGLV-SL-AG------------- 115 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhhh-----------------hhhe-ee-ee-------------
Confidence 45789999875 7899999999999999999863 34321 1222 11 00
Q ss_pred HhhhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEE-EEeCCe---EEEEeCC
Q psy7666 289 RRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNL-EFLEKG---VKAVDQP 344 (350)
Q Consensus 289 ~~~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I-~~~~~g---v~V~~~~ 344 (350)
...+.+.++||..+|++.|.+.- |.+| ++++|++| ...+++ +.|++.+
T Consensus 116 -----a~~gl~sV~GGN~qI~~~ll~~S--~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~ 167 (368)
T PF07156_consen 116 -----ATGGLWSVEGGNWQIFEGLLEAS--GANV-LNTTVTSITRRSSDGYSLYEVTYKS 167 (368)
T ss_pred -----ccCCceEecCCHHHHHHHHHHHc--cCcE-ecceeEEEEeccCCCceeEEEEEec
Confidence 02357899999999999999985 5899 99999999 444443 5666554
No 49
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.77 E-value=0.0078 Score=60.07 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=31.9
Q ss_pred Cceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 78 LLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 78 ~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
-++|||| |||+||. ++|++|||+|+.++.||++.-
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 3789999 9999998 689999999999999999875
No 50
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.66 E-value=0.0069 Score=61.75 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=27.4
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
|+|||| |||+||. +.|++|++||+++.+||-.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 567776 9999986 68999999999999999875
No 51
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.00 E-value=0.02 Score=62.26 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=30.6
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSV 113 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~ 113 (350)
++|||| |||+||+ +.|++|+|+|+.+.+||.++..
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~ 579 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI 579 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec
Confidence 568887 9999998 6799999999999999998643
No 52
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.00 E-value=0.024 Score=56.90 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=31.2
Q ss_pred Cceeehh----hHhHhhh----cCCCCEEEEecCCCCCcceEEE
Q psy7666 78 LLLLLVI----RILCTVL----RISTPITLLESSSRLGGWVRSV 113 (350)
Q Consensus 78 ~~~v~vi----aGLaaA~----~~G~~VtVlEa~drvGGRi~T~ 113 (350)
.++|||| |||.||. +.|++|+|||+.+++||.++.-
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 3679888 9999976 3599999999999999999864
No 53
>PRK12831 putative oxidoreductase; Provisional
Probab=94.91 E-value=0.025 Score=56.78 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=29.8
Q ss_pred CCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 77 DLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 77 ~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
..++|+|| |||+||+ +.|++|+|+|+.+.+||.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 33678887 8999997 57999999999999999874
No 54
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.38 E-value=0.032 Score=60.64 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=30.6
Q ss_pred Cceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 78 LLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 78 ~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
.++|+|| |||+||+ +.|++|+|+|+.+++||.++.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 3678887 9999997 679999999999999999864
No 55
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.31 E-value=0.037 Score=60.76 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=29.9
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
++|||| |||+||. ++|++|+|||+.+.+||.++.
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 678888 9999997 679999999999999998653
No 56
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=94.27 E-value=0.028 Score=50.21 Aligned_cols=53 Identities=15% Similarity=0.384 Sum_probs=38.5
Q ss_pred hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCC
Q psy7666 85 RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLAD 149 (350)
Q Consensus 85 aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~ 149 (350)
|||+||+ ++|.+|+|+|++..+||=++- +|+.|. -+--.. +..++++|+|++.
T Consensus 41 sGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~----GGmlf~----~iVv~~----~a~~iL~e~gI~y 96 (262)
T COG1635 41 SGLTAAYYLAKAGLKVAIFERKLSFGGGIWG----GGMLFN----KIVVRE----EADEILDEFGIRY 96 (262)
T ss_pred chHHHHHHHHhCCceEEEEEeecccCCcccc----cccccc----eeeecc----hHHHHHHHhCCcc
Confidence 9999998 689999999999999987542 343221 111122 6789999999965
No 57
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.16 E-value=0.089 Score=51.56 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=34.3
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCc-eecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPR-TIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~-~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
++++||++|. ++|++|+|+|+++...-. . .|.. .+. + +..++++++|+.+++.
T Consensus 26 aG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~------~------~g~~~~l~---~---~~~~~L~~lGl~~~l~ 82 (415)
T PRK07364 26 GGIVGLTLAAALKDSGLRIALIEAQPAEAAA------A------KGQAYALS---L---LSARIFEGIGVWEKIL 82 (415)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEecCCccccC------C------CCcEEEec---h---HHHHHHHHCChhhhhH
Confidence 3459999997 679999999998764210 0 1111 121 1 4578888999866544
No 58
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.11 E-value=0.046 Score=57.33 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=29.5
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
++|+|| |||+||. +.|++|+|+|+.+.+||.+..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 678887 9999997 679999999999999998653
No 59
>PLN02661 Putative thiazole synthesis
Probab=94.04 E-value=0.086 Score=50.81 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=34.7
Q ss_pred hhhHhHhhh---cC-CCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCC
Q psy7666 83 VIRILCTVL---RI-STPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLA 148 (350)
Q Consensus 83 viaGLaaA~---~~-G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~ 148 (350)
+++||+||+ +. |++|+|+|+...+||.... +|..+. .++ -.. ...++++++|++
T Consensus 101 G~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~----gg~l~~---~~v-v~~----~a~e~LeElGV~ 158 (357)
T PLN02661 101 GSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWL----GGQLFS---AMV-VRK----PAHLFLDELGVP 158 (357)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecCcccccceee----Cccccc---ccc-ccc----HHHHHHHHcCCC
Confidence 349999998 33 8999999999999885441 222111 111 111 456778888885
No 60
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.00 E-value=0.051 Score=56.80 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=29.0
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
++|+|| +||+||. +.|++|+|||+.+++||.++
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 678877 9999987 57999999999999999865
No 61
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=93.99 E-value=0.12 Score=50.05 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=45.6
Q ss_pred EEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 298 VWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 298 ~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+|......+.|+++|.+.+. .|++|+++++|.+|..++.+..|++.+|++++
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~ 155 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVK 155 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEE
Confidence 44333778899999999999 99999999999999999989999999997654
No 62
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.82 E-value=0.063 Score=53.62 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=28.6
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
++|+|| |||+||. +.|++|+|+|+.+++||.+.
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 668777 9999987 57999999999999999764
No 63
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=93.81 E-value=0.026 Score=50.41 Aligned_cols=53 Identities=15% Similarity=0.374 Sum_probs=32.5
Q ss_pred hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCC
Q psy7666 85 RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLAD 149 (350)
Q Consensus 85 aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~ 149 (350)
|||+||+ ++|.+|.|+|++..+||.++. +|..|. .+. -.. +...+++|+|++.
T Consensus 28 aGl~aA~~La~~g~kV~v~E~~~~~GGg~~~----Gg~lf~---~iV-Vq~----~a~~iL~elgi~y 83 (230)
T PF01946_consen 28 AGLTAAYYLAKAGLKVAVIERKLSPGGGMWG----GGMLFN---KIV-VQE----EADEILDELGIPY 83 (230)
T ss_dssp HHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-----CTT------EE-EET----TTHHHHHHHT---
T ss_pred hHHHHHHHHHHCCCeEEEEecCCCCCccccc----cccccc---hhh-hhh----hHHHHHHhCCcee
Confidence 9999998 579999999999999998542 333332 111 112 3568889999854
No 64
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=93.69 E-value=0.067 Score=53.78 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=28.6
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
++|+|| |||+||. ++|++|+|+|+.+++||.++
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 567777 9999987 67999999999999999764
No 65
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=93.64 E-value=0.068 Score=56.02 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=28.9
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
++|+|| |||+||. +.|++|+|+|+.+++||.++
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 678777 9999997 57999999999999999864
No 66
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.59 E-value=0.17 Score=37.57 Aligned_cols=38 Identities=26% Similarity=0.229 Sum_probs=32.0
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI 345 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G 345 (350)
+.+.+.+.+. .|++|++++.|++|..++++++|+..||
T Consensus 42 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 42 AAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 5556666666 7899999999999999988888888886
No 67
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=93.58 E-value=0.066 Score=57.05 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=29.1
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
++|+|| |||+||+ ++|++|+|+|+.+.+||.+.
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 678887 9999997 67999999999999999865
No 68
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=93.38 E-value=0.077 Score=52.97 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=32.4
Q ss_pred ceeehh----hHhHhhh---cCCCC-EEEEecCCCCCcceEEEecCCCeEEe
Q psy7666 79 LLLLVI----RILCTVL---RISTP-ITLLESSSRLGGWVRSVQSPEGLIFE 122 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~-VtVlEa~drvGGRi~T~~~~~G~~~D 122 (350)
.+|+|| |||++|+ ++|.. ++||||++++||--+..++ .+.+.|
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry-~~l~~~ 59 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRY-PGLRLD 59 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccC-CceEEC
Confidence 456666 9999987 57888 9999999999998666443 344333
No 69
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.15 E-value=0.17 Score=47.73 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=44.2
Q ss_pred eEEEecCc---HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEE-EEeCCCc
Q psy7666 297 SVWSVEGG---LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVK-AVDQPIH 346 (350)
Q Consensus 297 ~~~~~~GG---~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~-V~~~~G~ 346 (350)
.++.+.+| ...++++|.+.+. .|++|+++++|++|..++++|. |.+.+|+
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~ 189 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE 189 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc
Confidence 46667788 8889999999998 8999999999999999999998 9999987
No 70
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.94 E-value=0.075 Score=46.44 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=25.5
Q ss_pred ehhhHhHhhh---cCCCC-EEEEecCCCCCcceEEEe
Q psy7666 82 LVIRILCTVL---RISTP-ITLLESSSRLGGWVRSVQ 114 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~-VtVlEa~drvGGRi~T~~ 114 (350)
|+.|||++|. +.|.+ |+|||+++++||......
T Consensus 5 aG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~ 41 (203)
T PF13738_consen 5 AGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYY 41 (203)
T ss_dssp -SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-
T ss_pred cCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeC
Confidence 5669999987 67999 999999999999987543
No 71
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=92.92 E-value=0.2 Score=51.31 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=34.4
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCC--cceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLG--GWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvG--GRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
++++||++|. +.|++|+|+|+++.+. +|... + .+ +.+++++++|+.+++.
T Consensus 31 aGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~---------------l---~~---~~~~~l~~lGl~~~l~ 85 (547)
T PRK08132 31 AGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAIC---------------F---AK---RSLEIFDRLGCGERMV 85 (547)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEE---------------E---cH---HHHHHHHHcCCcHHHH
Confidence 3449999987 6799999999997542 22211 1 11 5678889999876543
No 72
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=92.83 E-value=0.086 Score=56.99 Aligned_cols=34 Identities=15% Similarity=-0.009 Sum_probs=28.6
Q ss_pred CCCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666 76 PDLLLLLVI----RILCTVL---RISTPITLLESSSRLGGW 109 (350)
Q Consensus 76 ~~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGR 109 (350)
+..++|+|| |||+||+ +.||+|||+|+.+..|+-
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 344779888 9999998 579999999999887775
No 73
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.82 E-value=0.098 Score=52.32 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=28.2
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
++|+|| |||+||. +.|++|+|+|+.+++||.+.
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 667777 8999987 57999999999999999754
No 74
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=92.80 E-value=0.07 Score=52.86 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=28.2
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEe
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQ 114 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~ 114 (350)
++|||+||+ +.|++|.|+|+...+|||+..+.
T Consensus 133 GvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 133 GVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred cHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 459999998 57999999999999999987654
No 75
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.79 E-value=0.1 Score=52.36 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=28.7
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
++|+|| +||+||. +.|++|+|+|+.+++||.++
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 567777 9999987 57999999999999999765
No 76
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=92.76 E-value=0.14 Score=50.42 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=32.7
Q ss_pred ehhhHhHhhh---cCC-CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCc
Q psy7666 82 LVIRILCTVL---RIS-TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ 150 (350)
Q Consensus 82 ~viaGLaaA~---~~G-~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~ 150 (350)
+.|+||++|+ ++| .+|+|||+++.++. .|.-+.+ .+ +..++++++|+.+.
T Consensus 8 gGiaGla~A~~L~~~g~~~v~v~Er~~~~~~--------~G~gi~l--------~~---~~~~~L~~lg~~~~ 61 (414)
T TIGR03219 8 GGIAGVALALNLCKHSHLNVQLFEAAPAFGE--------VGAGVSF--------GA---NAVRAIVGLGLGEA 61 (414)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEecCCcCCC--------Cccceee--------Cc---cHHHHHHHcCChhH
Confidence 3459999997 467 59999999876431 1222221 12 46788888888654
No 77
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=92.68 E-value=0.31 Score=47.55 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=36.7
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCC--CcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRL--GGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIP 153 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drv--GGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~ 153 (350)
++++||++|+ ++|++|+|+|++++. .+ +.++..+.+ +.+++++++|+.+++..
T Consensus 10 aGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~-------------~~~a~~l~~------~~~~~l~~lGl~~~l~~ 67 (392)
T PRK08243 10 AGPAGLLLGQLLHLAGIDSVVLERRSREYVEG-------------RIRAGVLEQ------GTVDLLREAGVGERMDR 67 (392)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCcccccc-------------ccceeEECH------hHHHHHHHcCChHHHHh
Confidence 4459999997 679999999998752 11 123333432 46799999999765543
No 78
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=92.43 E-value=0.098 Score=48.21 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=23.9
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWV 110 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi 110 (350)
.|||+||+ ++|.+|+|+|+.+.+||-+
T Consensus 31 pAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 31 PSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred HHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 39999997 6799999999999999864
No 79
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=92.36 E-value=0.097 Score=48.30 Aligned_cols=53 Identities=13% Similarity=0.372 Sum_probs=35.5
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCC
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLA 148 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~ 148 (350)
.|||+||+ ++|++|+|+|+...+||.+.. +|..++ ... .. ....++++++|++
T Consensus 35 pAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~----gg~~~~---~~~--v~---~~~~~~l~~~gv~ 90 (257)
T PRK04176 35 PSGLTAAYYLAKAGLKVAVFERKLSFGGGMWG----GGMLFN---KIV--VQ---EEADEILDEFGIR 90 (257)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCcccc----Cccccc---ccc--ch---HHHHHHHHHCCCC
Confidence 39999997 679999999999999986531 232221 000 11 1566788888874
No 80
>PRK06184 hypothetical protein; Provisional
Probab=91.96 E-value=0.18 Score=51.04 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=35.4
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
++++||++|. +.|++|+|+|+.+.+.-. ..+ ..+ .+ +.+++++++|+.+++.
T Consensus 11 aGpaGl~~A~~La~~Gi~v~viE~~~~~~~~------~ra-------~~l---~~---~~~e~l~~lGl~~~l~ 65 (502)
T PRK06184 11 AGPTGLTLAIELARRGVSFRLIEKAPEPFPG------SRG-------KGI---QP---RTQEVFDDLGVLDRVV 65 (502)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEeCCCCCCcC------ccc-------eee---cH---HHHHHHHHcCcHHHHH
Confidence 4459999997 689999999998764211 001 111 23 6789999999876544
No 81
>PRK08163 salicylate hydroxylase; Provisional
Probab=91.89 E-value=0.21 Score=48.58 Aligned_cols=50 Identities=26% Similarity=0.436 Sum_probs=33.7
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV 151 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l 151 (350)
+|+||++|. ++|++|+|+|+++.++- .|..+ .+ .+ +..++++++|+.+.+
T Consensus 13 GiaGl~~A~~L~~~g~~v~v~Er~~~~~~--------~g~gi-----~l---~~---~~~~~l~~lg~~~~~ 65 (396)
T PRK08163 13 GIGGLAAALALARQGIKVKLLEQAAEIGE--------IGAGI-----QL---GP---NAFSALDALGVGEAA 65 (396)
T ss_pred cHHHHHHHHHHHhCCCcEEEEeeCccccc--------cccee-----ee---Cc---hHHHHHHHcCChHHH
Confidence 349999997 67999999999875421 12111 11 22 577889999986543
No 82
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.78 E-value=0.11 Score=52.15 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=27.0
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEE
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAV 341 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~ 341 (350)
+.+.+.+.|. .|++|++++.|++|+.+++++.++
T Consensus 217 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~ 251 (466)
T PRK06115 217 TAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLT 251 (466)
T ss_pred HHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEE
Confidence 5566777777 789999999999998776666554
No 83
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=91.77 E-value=0.15 Score=47.32 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=24.3
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWVRSV 113 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T~ 113 (350)
.|||+||. +.|++|+|+|+.+ +||++...
T Consensus 10 ~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~ 41 (300)
T TIGR01292 10 PAGLTAAIYAARANLKTLIIEGME-PGGQLTTT 41 (300)
T ss_pred HHHHHHHHHHHHCCCCEEEEeccC-CCcceeec
Confidence 49999987 5799999999876 89987654
No 84
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=91.70 E-value=0.2 Score=48.24 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=36.0
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
+++|||++|+ ++|++|+|+|++...+=+ ..++ +..+..+. + +..++++++|+.+++.
T Consensus 7 aG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~------~~~~--~~~~~~l~---~---~~~~~l~~lGl~~~~~ 66 (385)
T TIGR01988 7 GGMVGLALALALARSGLKIALIEATPAEAAA------TPGF--DNRVSALS---A---ASIRLLEKLGVWDKIE 66 (385)
T ss_pred CCHHHHHHHHHHhcCCCEEEEEeCCCccccC------CCCC--CcceeecC---H---HHHHHHHHCCchhhhh
Confidence 5569999997 679999999999875411 0111 11111122 1 4678889999876543
No 85
>KOG2415|consensus
Probab=91.58 E-value=0.18 Score=49.21 Aligned_cols=76 Identities=21% Similarity=0.210 Sum_probs=48.6
Q ss_pred eecCccccccccccccccccccccccccccccccccccCCCCCCC-------------ceeehh----hHhHhhhc----
Q psy7666 34 LKIPTLSESTCLYLQPLPEARYLSFKFQDCHCETSIQKRPFPPDL-------------LLLLVI----RILCTVLR---- 92 (350)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~v~vi----aGLaaA~~---- 92 (350)
|+|-.++..-|...||++..+-++...-.....+ -.|..++. -.|.|+ |||+||.+
T Consensus 22 l~i~~~~~~l~~~s~~~r~~s~~~~~~~~tt~~~---l~~~~~d~r~~~v~~~R~~e~~Dv~IVG~GPAGLsaAIrlKQl 98 (621)
T KOG2415|consen 22 LKISRLSLPLLASSDMTRKFSNLSCRPRITTHYT---LNPLTKDERWLDVNMERESEEVDVVIVGAGPAGLSAAIRLKQL 98 (621)
T ss_pred eecccccccccccccchhhhhhhccccceeceee---ecCCCcchhhhcccchhhhccccEEEECCCchhHHHHHHHHHH
Confidence 7888899999999999887443333222222211 11222220 123333 99999972
Q ss_pred -----CCCCEEEEecCCCCCcceEE
Q psy7666 93 -----ISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 93 -----~G~~VtVlEa~drvGGRi~T 112 (350)
...+|.|+|++..+||.+-|
T Consensus 99 a~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 99 AAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred HHhcCCceEEEEEeeccccCCceec
Confidence 25899999999999999766
No 86
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=91.48 E-value=0.12 Score=51.03 Aligned_cols=65 Identities=15% Similarity=0.300 Sum_probs=35.4
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCC--------cceEEEec-C--CCeEEe--cCCceec---CCCCCchHHHHHHHH
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLG--------GWVRSVQS-P--EGLIFE--KGPRTIR---PKGRLGANTLKLVED 144 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvG--------GRi~T~~~-~--~G~~~D--~Ga~~~~---~~~~~~~~l~~l~~e 144 (350)
.|||.||. +.|.+|+|||+.+++| ||++--+. . ..|.-+ ..+..+. ... +...+.+++++
T Consensus 10 aAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f-~~~d~~~ff~~ 88 (409)
T PF03486_consen 10 AAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF-SPEDLIAFFEE 88 (409)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC-CHHHHHHHHHh
Confidence 39999998 5699999999999994 88885551 1 122222 1333331 111 12367888888
Q ss_pred cCCCC
Q psy7666 145 LGLAD 149 (350)
Q Consensus 145 lGl~~ 149 (350)
+|++.
T Consensus 89 ~Gv~~ 93 (409)
T PF03486_consen 89 LGVPT 93 (409)
T ss_dssp TT--E
T ss_pred cCCeE
Confidence 88754
No 87
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=91.42 E-value=0.13 Score=51.48 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=34.2
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.+.+.+.+.+. .|++|+++++|++|+.+++++.|+..+|++++
T Consensus 217 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~ 260 (461)
T PRK05249 217 EISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIK 260 (461)
T ss_pred HHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEE
Confidence 36667777777 78999999999999987778888777776553
No 88
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=91.38 E-value=0.19 Score=50.72 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=28.4
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
++|+|| +||+||. +.|++|+|+|+.+++||.+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 567777 8999987 57999999999999999875
No 89
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=91.36 E-value=0.14 Score=50.76 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=23.4
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
..||++||. ++|.+|+|+|+.+.+||...
T Consensus 8 G~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 8 GPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred cHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 349999988 68999999999999999764
No 90
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=91.25 E-value=0.15 Score=50.66 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.4
Q ss_pred ehhhHhHhhh---cCC-CCEEEEecCCCCCcce
Q psy7666 82 LVIRILCTVL---RIS-TPITLLESSSRLGGWV 110 (350)
Q Consensus 82 ~viaGLaaA~---~~G-~~VtVlEa~drvGGRi 110 (350)
+.+|||+||+ ++| .+|+|+|+.+..||..
T Consensus 7 ~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 7 SGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 3459999987 579 9999999999988863
No 91
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=91.00 E-value=0.16 Score=50.55 Aligned_cols=43 Identities=12% Similarity=0.211 Sum_probs=32.7
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.+.+.+.+.|. .|+++++++.|++|...++++.|+..+|+++.
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~ 251 (446)
T TIGR01424 208 DMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIV 251 (446)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEee
Confidence 35556666666 78999999999999887777778777776543
No 92
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=90.82 E-value=0.19 Score=50.21 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=30.9
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI 345 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G 345 (350)
.+.+.+.+.+. .|++|++++.|++|+.+++++.|...+|
T Consensus 212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g 251 (461)
T TIGR01350 212 EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGG 251 (461)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCC
Confidence 35556666676 7899999999999998877887776666
No 93
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=90.78 E-value=0.14 Score=50.26 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe---EEEEe-CCCcee
Q psy7666 304 GLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG---VKAVD-QPIHQM 348 (350)
Q Consensus 304 G~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g---v~V~~-~~G~~~ 348 (350)
+-..+++.|.+.+. .|++|+++++|+++..++++ +.+.. .+|+.+
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~ 188 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFV 188 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEE
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEE
Confidence 55678899999888 78999999999999998775 33442 455543
No 94
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=90.72 E-value=0.17 Score=49.54 Aligned_cols=30 Identities=13% Similarity=-0.025 Sum_probs=26.6
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
+.||++||+ ++|++|.|+|+.+.+|-+..+
T Consensus 12 GPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 12 GPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred chHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 349999998 679999999999999998777
No 95
>PRK07121 hypothetical protein; Validated
Probab=90.58 E-value=0.28 Score=49.60 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=23.3
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWV 110 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi 110 (350)
+|||+||+ ++|.+|+|+|+.+..||..
T Consensus 30 ~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 30 AAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 49999987 5699999999999988853
No 96
>PLN02985 squalene monooxygenase
Probab=90.56 E-value=0.85 Score=46.46 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=33.3
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
++++||++|. ++|++|+|+|+......+. . ...+.+ +-.+.++++|+.+.+.
T Consensus 51 AG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~------~-------g~~L~p------~g~~~L~~LGl~d~l~ 105 (514)
T PLN02985 51 AGVGGSALAYALAKDGRRVHVIERDLREPERM------M-------GEFMQP------GGRFMLSKLGLEDCLE 105 (514)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECcCCCCccc------c-------ccccCc------hHHHHHHHcCCcchhh
Confidence 3459999987 6799999999975421110 1 122322 3457889999976544
No 97
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=90.48 E-value=0.59 Score=46.31 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCce
Q psy7666 305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQ 347 (350)
Q Consensus 305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~ 347 (350)
+..+..+|++.+. +|++|++|++|+.|+..++| +.+.+.+|++
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~ 196 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEE 196 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcE
Confidence 5668889999998 89999999999999999885 6778888875
No 98
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.30 E-value=0.22 Score=54.81 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=29.1
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
.+|+|| |||+||. ++|++|+|+|+.+++||.+..
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 456666 9999998 679999999999999998864
No 99
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=90.13 E-value=0.22 Score=50.61 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.4
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWV 110 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi 110 (350)
+|||+||+ ++|.+|+|+|+.+.+||..
T Consensus 71 ~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 71 GAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 49999987 5799999999999999853
No 100
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=90.13 E-value=0.36 Score=46.49 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=28.5
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
++|+|| +||++|. +.|++|+|+|+.+++||.+..
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~ 59 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF 59 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence 567766 8999886 579999999999999998754
No 101
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=90.02 E-value=0.25 Score=48.62 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=25.1
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWV 110 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi 110 (350)
+++|||+||. +.|.+|+|+|+.+++|+.+
T Consensus 5 gG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~ 36 (400)
T TIGR00275 5 GGAAGLMAAITAAREGLSVLLLEKNKKIGKKL 36 (400)
T ss_pred EeHHHHHHHHHHHhcCCcEEEEecCccccccc
Confidence 6679999997 5799999999999998754
No 102
>PRK06753 hypothetical protein; Provisional
Probab=89.99 E-value=0.23 Score=47.91 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=21.1
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRL 106 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drv 106 (350)
+.++||++|. ++|++|+|+|+++.+
T Consensus 8 gG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 8 AGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 3459999997 689999999999764
No 103
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=89.93 E-value=0.43 Score=46.62 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=36.6
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
++++||++|. ++|++|+|+|+.+.. .. . -+.|+..+. + +.+++++++|+.+++.
T Consensus 10 aG~aGl~~A~~L~~~G~~v~viE~~~~~------~~--~---~~~~a~~l~---~---~~~~~L~~lGl~~~l~ 66 (390)
T TIGR02360 10 AGPSGLLLGQLLHKAGIDNVILERQSRD------YV--L---GRIRAGVLE---Q---GTVDLLREAGVDERMD 66 (390)
T ss_pred ccHHHHHHHHHHHHCCCCEEEEECCCCc------cc--C---CceeEeeEC---H---HHHHHHHHCCChHHHH
Confidence 4569999987 679999999998751 00 0 023444332 2 5789999999876544
No 104
>PRK05868 hypothetical protein; Validated
Probab=89.90 E-value=0.54 Score=45.67 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=33.9
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV 151 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l 151 (350)
++++||++|. ++|++|+|+|+++... ..|..+++ .+ +..++++++|+.+.+
T Consensus 9 gG~aGl~~A~~L~~~G~~v~viE~~~~~~--------~~g~~i~~--------~~---~a~~~L~~lGl~~~~ 62 (372)
T PRK05868 9 ASVAGTAAAYWLGRHGYSVTMVERHPGLR--------PGGQAIDV--------RG---PALDVLERMGLLAAA 62 (372)
T ss_pred CCHHHHHHHHHHHhCCCCEEEEcCCCCCC--------CCceeeee--------Cc---hHHHHHHhcCCHHHH
Confidence 3459999997 6799999999986631 12222221 12 456888899986543
No 105
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.78 E-value=0.34 Score=49.88 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=28.1
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
++|+|| +||++|. +.|++|+|+|+.+.+||.++
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 567777 9999987 57999999999999999754
No 106
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.77 E-value=0.59 Score=45.45 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=34.9
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV 151 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l 151 (350)
++++||++|. ++|++|+|+|+.+.. ... ..| .++.+...+. + +-+++++++|+.+.+
T Consensus 11 gG~aGl~~A~~L~~~G~~v~l~E~~~~~-----~~~-~~~-~~~~r~~~l~---~---~~~~~L~~lG~~~~~ 70 (384)
T PRK08849 11 GGMVGAATALGFAKQGRSVAVIEGGEPK-----AFE-PSQ-PMDIRVSAIS---Q---TSVDLLESLGAWSSI 70 (384)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEcCCCcc-----cCC-CCC-CCCccEEEec---H---HHHHHHHHCCCchhh
Confidence 4569999997 679999999987421 111 111 1122222222 2 568899999987654
No 107
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=89.75 E-value=0.21 Score=46.09 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=41.3
Q ss_pred EEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 299 WSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 299 ~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
|.-.-||.+|.+.|+..| +|+++++|+.|.+.++.|++++++|...+
T Consensus 101 yvg~pgmsalak~LAtdL----~V~~~~rVt~v~~~~~~W~l~~~~g~~~~ 147 (331)
T COG3380 101 YVGEPGMSALAKFLATDL----TVVLETRVTEVARTDNDWTLHTDDGTRHT 147 (331)
T ss_pred cccCcchHHHHHHHhccc----hhhhhhhhhhheecCCeeEEEecCCCccc
Confidence 556789999999999988 69999999999999999999998876543
No 108
>PRK08013 oxidoreductase; Provisional
Probab=89.75 E-value=0.52 Score=46.17 Aligned_cols=58 Identities=14% Similarity=0.030 Sum_probs=36.8
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
++++||++|. ++|++|+|+|+.+...- ..|...+.-+..+ .+ ..+++++++|+.+++.
T Consensus 11 aGpaGl~~A~~La~~G~~v~viE~~~~~~~-------~~g~~~~~r~~~l---~~---~s~~~L~~lGl~~~~~ 71 (400)
T PRK08013 11 GGMVGLAVACGLQGSGLRVAVLEQRVPEPL-------AADAPPALRVSAI---NA---ASEKLLTRLGVWQDIL 71 (400)
T ss_pred cCHHHHHHHHHHhhCCCEEEEEeCCCCccc-------ccCCCCCceeeec---ch---hHHHHHHHcCCchhhh
Confidence 4569999997 67999999999875321 0111122222223 22 5678999999876543
No 109
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.60 E-value=0.24 Score=49.19 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=26.0
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCC-CCcceE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSR-LGGWVR 111 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~dr-vGGRi~ 111 (350)
+|+|| ||++||. ++|++|+|+|+.+. +||.+-
T Consensus 5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 36666 9999997 57999999999875 699754
No 110
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=89.20 E-value=0.3 Score=50.16 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=24.4
Q ss_pred hhhHhHhhh---cCCCCEEEEecCC--CCCcceE
Q psy7666 83 VIRILCTVL---RISTPITLLESSS--RLGGWVR 111 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~d--rvGGRi~ 111 (350)
.+|||+||. ++|.+|+|+|+.+ .+||...
T Consensus 13 G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 13 GLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 349999987 5799999999999 8899653
No 111
>PRK13984 putative oxidoreductase; Provisional
Probab=89.20 E-value=0.37 Score=49.99 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=27.9
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
++|+|| +||+||. ++|++|+|+|+.+.+||...
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 556666 8999987 67999999999999999754
No 112
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.15 E-value=0.31 Score=47.81 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=34.5
Q ss_pred EEEecCc---HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC
Q psy7666 298 VWSVEGG---LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ 343 (350)
Q Consensus 298 ~~~~~GG---~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~ 343 (350)
++.+..| ...+..+|++.+. .|++|+.+++|++|+.++++|.|.+.
T Consensus 186 ~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~ 235 (410)
T PRK12409 186 YYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQ 235 (410)
T ss_pred EEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEE
Confidence 4444433 3557778888887 89999999999999988877776543
No 113
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=88.94 E-value=0.58 Score=45.83 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=33.8
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCC-CCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSS-RLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~d-rvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
++++||++|. ++|++|+|+|+.. .. +.. ..+ +.-+..+ .+ +-+++++++|+.+.+.
T Consensus 12 aG~~Gl~~A~~L~~~G~~v~viE~~~~~~-----~~~-~~~---~~r~~~l---~~---~~~~~L~~lGl~~~l~ 71 (405)
T PRK08850 12 GGMVGLALAAALKESDLRIAVIEGQLPEE-----ALN-ELP---DVRVSAL---SR---SSEHILRNLGAWQGIE 71 (405)
T ss_pred ccHHHHHHHHHHHhCCCEEEEEcCCCCcc-----ccc-CCC---Ccceecc---cH---HHHHHHHhCCchhhhh
Confidence 4569999997 6799999999862 11 000 000 1101112 22 6789999999876543
No 114
>PRK10262 thioredoxin reductase; Provisional
Probab=88.91 E-value=0.37 Score=45.59 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=26.8
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSV 113 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~ 113 (350)
++|+|| |||+||. +.|++|+|+|+ ...||.+...
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~~~ 47 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTT 47 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCceecC
Confidence 456666 9999987 57999999995 4789987654
No 115
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=88.74 E-value=0.36 Score=49.65 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=26.7
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSV 113 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~ 113 (350)
.|+|| |||+||. ++|++|+|+|+ +++||.+...
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~~~ 45 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQITIT 45 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEEec
Confidence 35555 9999997 57999999998 5899988653
No 116
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=88.74 E-value=0.37 Score=48.22 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=22.1
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCC--CCcc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSR--LGGW 109 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~dr--vGGR 109 (350)
.+|||+||+ ++|.+|+|+|+.+. .||.
T Consensus 13 G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 13 GNAALCAALAAREAGASVLLLEAAPREWRGGN 44 (466)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcc
Confidence 449999987 57999999999874 6774
No 117
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=88.63 E-value=0.31 Score=45.95 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=22.0
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
++|+|+++|+ +.|++|+|+|+. .+|+
T Consensus 7 aGi~G~~~A~~La~~G~~V~l~e~~-~~~~ 35 (358)
T PF01266_consen 7 AGIAGLSTAYELARRGHSVTLLERG-DIGS 35 (358)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEEESS-STTS
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeec-cccc
Confidence 4569999998 789999999999 5555
No 118
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=88.63 E-value=0.31 Score=45.95 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=33.9
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
++++||++|+ ++|++|+|+|+++..--. + .+..+.+ +.+++++++|+.+.+.
T Consensus 9 aG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~--------~-----~~~~l~~------~~~~~l~~lgl~~~~~ 63 (356)
T PF01494_consen 9 AGPAGLAAALALARAGIDVTIIERRPDPRPK--------G-----RGIGLSP------NSLRILQRLGLLDEIL 63 (356)
T ss_dssp -SHHHHHHHHHHHHTTCEEEEEESSSSCCCS--------S-----SSEEEEH------HHHHHHHHTTEHHHHH
T ss_pred CCHHHHHHHHHHHhcccccccchhccccccc--------c-----ccccccc------ccccccccccchhhhh
Confidence 3459999997 789999999997653211 1 1222321 5568888888765433
No 119
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.58 E-value=0.32 Score=48.61 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=30.7
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI 345 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G 345 (350)
.+.+.+.+.|. .|++|+++++|++|..+++++.|...+|
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~g 253 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDG 253 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeC
Confidence 45566666676 7899999999999998777787776655
No 120
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=88.19 E-value=0.33 Score=48.49 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=29.2
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCC
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPI 345 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G 345 (350)
+.+.+.+.|. .|+++++++.|++|..++++ +.|+..+|
T Consensus 209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g 248 (450)
T TIGR01421 209 ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDG 248 (450)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCC
Confidence 5566666776 78999999999999876544 67777666
No 121
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=88.09 E-value=0.36 Score=49.75 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=30.8
Q ss_pred EecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666 300 SVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG 337 (350)
Q Consensus 300 ~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g 337 (350)
+..+| ..|+.+|.+.+. .|++|+++++|+++..++++
T Consensus 212 ~~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~ 249 (564)
T PRK12845 212 YAAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGR 249 (564)
T ss_pred ccCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCE
Confidence 35667 889999998887 88999999999999875553
No 122
>PRK06834 hypothetical protein; Provisional
Probab=88.05 E-value=0.67 Score=46.86 Aligned_cols=24 Identities=8% Similarity=-0.117 Sum_probs=20.3
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
++++||++|. ++|++|+|+|+.+.
T Consensus 11 aGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 11 GGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4459999997 67999999999875
No 123
>PRK07236 hypothetical protein; Provisional
Probab=87.96 E-value=0.5 Score=45.94 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.0
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
++++||++|+ +.|++|+|||+++.
T Consensus 14 aG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 14 GSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3459999987 67999999999864
No 124
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=87.94 E-value=0.37 Score=49.77 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG 337 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g 337 (350)
..|.++|.+.+. .|++|+++++|++|..++++
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~ 246 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGR 246 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCE
Confidence 568888888777 78999999999999987764
No 125
>PRK08244 hypothetical protein; Provisional
Probab=87.94 E-value=0.53 Score=47.46 Aligned_cols=24 Identities=8% Similarity=-0.204 Sum_probs=20.2
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
++++||++|. ++|++|+|+|+.+.
T Consensus 10 aGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 10 GGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4459999997 68999999999865
No 126
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=87.81 E-value=1 Score=46.10 Aligned_cols=51 Identities=25% Similarity=0.304 Sum_probs=35.0
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
+++||++|. +.|++|+|+|+.+.++..-+.+. + .+ +.+++++++|+.+++.
T Consensus 19 Gp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~-------------l---~~---~~~~~L~~lGl~~~l~ 72 (538)
T PRK06183 19 GPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVG-------------I---DD---EALRVLQAIGLADEVL 72 (538)
T ss_pred CHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceee-------------e---CH---HHHHHHHHcCChhHHH
Confidence 349999987 67999999999976542211111 1 12 6788999999876544
No 127
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.79 E-value=0.4 Score=48.20 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=26.5
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
.|+|| +|++||. +.|++|+|+|+.+.+||.+.
T Consensus 6 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 6 QVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 35665 8999987 57999999999889999763
No 128
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=87.75 E-value=1.6 Score=42.34 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=40.9
Q ss_pred EEEecCcH---HHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 298 VWSVEGGL---QTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 298 ~~~~~GG~---~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
++.+.+|. ..++.+|++.+..|++|+.+++|+.|+.++++|.|++.+|.+++
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ 178 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIA 178 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEE
Confidence 44455553 56888888877657899999999999988888999988887543
No 129
>PRK12839 hypothetical protein; Provisional
Probab=87.67 E-value=0.49 Score=48.83 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeC-C---eEEEEeCCCc
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLE-K---GVKAVDQPIH 346 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~-~---gv~V~~~~G~ 346 (350)
..|+..|++.+. .|++|+++++|++|..++ + ||.+...+|.
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~ 259 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGA 259 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCc
Confidence 447778877777 789999999999998753 3 3444445554
No 130
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=87.51 E-value=0.51 Score=46.81 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=20.9
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCC
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLG 107 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvG 107 (350)
.+||++||+ ++|++|+|+|+.+.+|
T Consensus 14 GpAG~~aA~~La~~G~~V~llEr~~~~g 41 (428)
T PRK10157 14 GLAGSVAALVLAREGAQVLVIERGNSAG 41 (428)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 349999997 6799999999987654
No 131
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.46 E-value=0.43 Score=47.84 Aligned_cols=40 Identities=8% Similarity=0.047 Sum_probs=29.9
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC--CCc
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ--PIH 346 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~--~G~ 346 (350)
.+.+.+.+.|. .|++|+++++|++|..+++++.|+.. +|.
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~ 256 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGK 256 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCC
Confidence 35667777777 78999999999999877666655543 553
No 132
>PRK06475 salicylate hydroxylase; Provisional
Probab=87.39 E-value=0.44 Score=46.61 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=33.7
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
++|+||++|. ++|++|+|+|+.+.+. ..| .-... .+ +..++++++|+.+++.
T Consensus 10 gGiaGl~~A~~L~~~G~~V~i~E~~~~~~--------~~g------~gi~l--~~---~~~~~L~~~Gl~~~l~ 64 (400)
T PRK06475 10 AGVAGLSAALELAARGWAVTIIEKAQELS--------EVG------AGLQL--AP---NAMRHLERLGVADRLS 64 (400)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEecCCccC--------cCC------cccee--Ch---hHHHHHHHCCChHHHh
Confidence 3459999987 6799999999986531 112 11111 12 5678888888865443
No 133
>PRK07588 hypothetical protein; Provisional
Probab=87.31 E-value=0.44 Score=46.35 Aligned_cols=24 Identities=21% Similarity=0.086 Sum_probs=20.2
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
++++||++|. ++|++|+|+|+.++
T Consensus 8 gG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 8 AGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred ccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3459999997 67999999999865
No 134
>PRK07538 hypothetical protein; Provisional
Probab=87.24 E-value=0.46 Score=46.71 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=20.7
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRL 106 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drv 106 (350)
++++||++|. ++|++|+|+|+++.+
T Consensus 8 aG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 8 GGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 4459999997 679999999998653
No 135
>KOG2614|consensus
Probab=87.24 E-value=0.4 Score=46.70 Aligned_cols=24 Identities=33% Similarity=0.238 Sum_probs=20.3
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
++|+||++|. ++|++|+|||++..
T Consensus 10 gGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 10 GGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 4569999987 78999999999854
No 136
>PRK06116 glutathione reductase; Validated
Probab=87.16 E-value=0.35 Score=48.17 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~~ 349 (350)
.+.+.+.+.|. .|++|+++++|++|+.++++ +.|++.+|+++.
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~ 253 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLT 253 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEE
Confidence 35666777777 78999999999999887655 778877776553
No 137
>PRK06847 hypothetical protein; Provisional
Probab=86.84 E-value=0.52 Score=45.44 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.2
Q ss_pred hhHhHhhh---cCCCCEEEEecCCC
Q psy7666 84 IRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~dr 105 (350)
+|||++|. +.|++|+|+|+++.
T Consensus 14 ~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 14 IGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCC
Confidence 49999997 67999999999875
No 138
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=86.80 E-value=0.48 Score=47.55 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=26.8
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSV 113 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~ 113 (350)
+|+|| ||++||. ++|++|+|+|+. ++||.+...
T Consensus 6 dvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~ 45 (472)
T PRK05976 6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK 45 (472)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC
Confidence 46666 9999987 579999999985 899988553
No 139
>PRK06126 hypothetical protein; Provisional
Probab=86.78 E-value=0.63 Score=47.60 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=33.7
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
++++||++|+ +.|++|+|+|+.+... ..+ .+..+ .+ ..+++++++|+.+++.
T Consensus 15 aGpaGL~~Al~La~~G~~v~viEr~~~~~--------~~~-----ra~~l---~~---r~~e~L~~lGl~~~l~ 69 (545)
T PRK06126 15 GGPVGLALALDLGRRGVDSILVERKDGTA--------FNP-----KANTT---SA---RSMEHFRRLGIADEVR 69 (545)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEeCCCCCC--------CCC-----ccccC---CH---HHHHHHHhcChHHHHH
Confidence 3459999997 6799999999875321 011 11112 22 5778899999866443
No 140
>PRK09126 hypothetical protein; Provisional
Probab=86.72 E-value=0.58 Score=45.42 Aligned_cols=24 Identities=17% Similarity=-0.032 Sum_probs=20.5
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
++++||++|. ++|++|+|+|+++.
T Consensus 11 gG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 11 AGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 4459999997 67999999999875
No 141
>PRK07045 putative monooxygenase; Reviewed
Probab=86.38 E-value=0.52 Score=45.83 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=20.4
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRL 106 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drv 106 (350)
+++||++|. ++|++|+|+|+.+..
T Consensus 14 GpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 14 GIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred cHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 349999997 689999999998763
No 142
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=86.29 E-value=0.93 Score=44.13 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=33.2
Q ss_pred ehhhHhHhhh---cCC--CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RIS--TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G--~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
++++||++|. ++| ++|+|+|+++.... . .++ .+..+ .+ +..++++++|+.+.+.
T Consensus 9 aG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~-----~-~~~-----~~~~l---~~---~~~~~l~~lGl~~~~~ 67 (403)
T PRK07333 9 GGYVGLALAVALKQAAPHLPVTVVDAAPAGAW-----S-RDP-----RASAI---AA---AARRMLEALGVWDEIA 67 (403)
T ss_pred ccHHHHHHHHHHhcCCCCCEEEEEeCCCcccC-----C-CCc-----ceEEe---cH---HHHHHHHHCCChhhhh
Confidence 4569999997 454 99999999864211 0 011 11112 22 5678889999865443
No 143
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=86.17 E-value=0.54 Score=48.66 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC
Q psy7666 305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK 336 (350)
Q Consensus 305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~ 336 (350)
...++..|.+.+. .|++|+++++|++|..+++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~ 244 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPD 244 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCC
Confidence 3557777766666 7899999999999998643
No 144
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=86.08 E-value=0.61 Score=46.32 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=31.3
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH 346 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~ 346 (350)
.+.+.+.+.|. .|+++++++.|++|..+++++.|++.+++
T Consensus 200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~ 240 (441)
T PRK08010 200 DIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ 240 (441)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCe
Confidence 35667777777 78999999999999987777777765553
No 145
>PRK14727 putative mercuric reductase; Provisional
Probab=86.06 E-value=0.51 Score=47.55 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=31.2
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH 346 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~ 346 (350)
.+.+.+.+.|. .|++|+++++|++|+.+++++.|...+++
T Consensus 229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~ 269 (479)
T PRK14727 229 LLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGE 269 (479)
T ss_pred HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCe
Confidence 35566777777 78999999999999887777777766553
No 146
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=85.92 E-value=0.56 Score=43.10 Aligned_cols=27 Identities=15% Similarity=-0.139 Sum_probs=22.6
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
+.+|||++|. +.|.+|+|+|+++..+.
T Consensus 8 aG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 8 AGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 4459999997 67999999999987665
No 147
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=85.83 E-value=0.63 Score=45.28 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=26.0
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
.|+|| |||-||. ++|++|+|+|+.+.+|=++.
T Consensus 5 dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil 43 (408)
T COG2081 5 DVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKIL 43 (408)
T ss_pred eEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeE
Confidence 46666 9998886 67999999999999975544
No 148
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=85.79 E-value=0.55 Score=46.87 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=25.1
Q ss_pred eehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 81 LLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
|+|| |||+||. +.|.+|+|+|+ +++||.+.
T Consensus 6 vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 6 VIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 5555 9999987 57999999999 78999765
No 149
>PRK06175 L-aspartate oxidase; Provisional
Probab=85.62 E-value=0.62 Score=46.33 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=22.9
Q ss_pred hhhHhHhhh--cCCCCEEEEecCCCCCcc
Q psy7666 83 VIRILCTVL--RISTPITLLESSSRLGGW 109 (350)
Q Consensus 83 viaGLaaA~--~~G~~VtVlEa~drvGGR 109 (350)
++|||+||. +.|.+|+|+|+.+..||.
T Consensus 13 G~AGl~AA~~a~~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 13 GVAGLYSALNLRKDLKILMVSKGKLNECN 41 (433)
T ss_pred hHHHHHHHHHhccCCCEEEEecCCCCCCc
Confidence 349999987 469999999999988874
No 150
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=85.53 E-value=0.6 Score=45.31 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=23.1
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGW 109 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGR 109 (350)
+++|||++|+ ++|++|+|+|+.+.+||.
T Consensus 7 aG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 7 GGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 4559999987 579999999999877763
No 151
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=85.36 E-value=0.76 Score=46.75 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=23.9
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWV 110 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi 110 (350)
+. +||+||+ ++|.+|+|+|+.+.+||..
T Consensus 15 ~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 15 SG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred ch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 56 8999987 5699999999999888853
No 152
>PRK10015 oxidoreductase; Provisional
Probab=84.83 E-value=0.67 Score=46.01 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=20.3
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRL 106 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drv 106 (350)
+.||++||+ ++|++|+|+|+.+.+
T Consensus 14 GpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 14 GVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred CHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 349999997 679999999998764
No 153
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.79 E-value=0.95 Score=47.28 Aligned_cols=40 Identities=13% Similarity=-0.027 Sum_probs=27.4
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecC
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKG 124 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~G 124 (350)
++|||+||. ++|.+|+|+|+....|| +|..-.+|.....|
T Consensus 17 G~AGl~AAl~Aae~G~~V~lieK~~~~~g--~s~~a~Ggi~a~~~ 59 (626)
T PRK07803 17 GGAGLRAAIEARERGLRVAVVCKSLFGKA--HTVMAEGGCAAAMG 59 (626)
T ss_pred CHHHHHHHHHHHHCCCCEEEEeccCCCCC--cceecCccceeecc
Confidence 349999987 56999999999986655 34432345544433
No 154
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=84.59 E-value=1.6 Score=37.93 Aligned_cols=43 Identities=9% Similarity=0.197 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 305 LQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 305 ~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+....+.+++... .+|+++++|++|++++++|.|++.++++++
T Consensus 84 v~~yl~~~~~~~~--l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~ 126 (203)
T PF13738_consen 84 VLDYLQEYAERFG--LEIRFNTRVESVRRDGDGWTVTTRDGRTIR 126 (203)
T ss_dssp HHHHHHHHHHHTT--GGEETS--EEEEEEETTTEEEEETTS-EEE
T ss_pred HHHHHHHHHhhcC--cccccCCEEEEEEEeccEEEEEEEecceee
Confidence 3446666777764 679999999999999999999999996553
No 155
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=84.56 E-value=0.74 Score=47.39 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG 337 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g 337 (350)
..|+..|.+.+. .|++|+++++|++|..++++
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~ 240 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVEDGR 240 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCE
Confidence 447888888777 78999999999999987654
No 156
>PRK06370 mercuric reductase; Validated
Probab=84.46 E-value=0.71 Score=46.20 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=25.9
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEE
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAV 341 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~ 341 (350)
+.+.+.+.|. .|++|+++++|.+|..+++++.|.
T Consensus 214 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~ 248 (463)
T PRK06370 214 VAAAVREILEREGIDVRLNAECIRVERDGDGIAVG 248 (463)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEE
Confidence 4556666666 789999999999998876665444
No 157
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=84.31 E-value=0.77 Score=44.96 Aligned_cols=41 Identities=12% Similarity=0.025 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE-EEEeCCC
Q psy7666 305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV-KAVDQPI 345 (350)
Q Consensus 305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv-~V~~~~G 345 (350)
...++++|++.+. .|++|+++++|++|+.+++++ .|++.++
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~ 242 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG 242 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc
Confidence 4468888888887 889999999999999887775 4666655
No 158
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=84.31 E-value=0.92 Score=44.11 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=20.4
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
++++||++|+ ++|++|+|+|+.+.
T Consensus 14 aG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 14 GGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 4459999997 67999999999875
No 159
>PRK07395 L-aspartate oxidase; Provisional
Probab=84.21 E-value=1 Score=46.26 Aligned_cols=28 Identities=11% Similarity=-0.069 Sum_probs=23.1
Q ss_pred ehhhHhHhhh--cCCCCEEEEecCCCCCcc
Q psy7666 82 LVIRILCTVL--RISTPITLLESSSRLGGW 109 (350)
Q Consensus 82 ~viaGLaaA~--~~G~~VtVlEa~drvGGR 109 (350)
+++|||+||. ++|.+|+|+|+.+..||.
T Consensus 17 ~G~AGl~AAi~A~~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 17 SGAAGLYAALCLPSHLRVGLITKDTLKTSA 46 (553)
T ss_pred ccHHHHHHHHHhhcCCCEEEEEccCCCCCc
Confidence 3449999998 349999999999988874
No 160
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=84.20 E-value=2.3 Score=41.98 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=37.0
Q ss_pred EEEecC-cHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCcee
Q psy7666 298 VWSVEG-GLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQM 348 (350)
Q Consensus 298 ~~~~~G-G~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~ 348 (350)
-.+|.. -..+++++|.+.+. .|++|+++++|++|..++++ +.|.+.++.++
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~ 153 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEY 153 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccc
Confidence 444553 57779999999998 89999999999999998888 88888555554
No 161
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=84.16 E-value=1.3 Score=42.86 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=19.6
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSS 104 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~d 104 (350)
++++||++|. +.|++|+|+|+.+
T Consensus 9 gG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 9 CGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred CCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 4569999997 6799999999875
No 162
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.09 E-value=0.94 Score=46.94 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=21.9
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
++|||+||. ++|.+|+|+|+....||
T Consensus 12 G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 12 GLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred hHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 449999987 56999999999987665
No 163
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=83.90 E-value=0.78 Score=44.86 Aligned_cols=59 Identities=12% Similarity=0.065 Sum_probs=34.9
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV 151 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l 151 (350)
++++||++|. ++|++|+|+|+.+..++.... ....-..|. .+ .+ +-.++++++|+.+++
T Consensus 10 aG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~----~~~~~~r~~-~l---~~---~~~~~L~~lGl~~~l 71 (405)
T PRK05714 10 AGMVGSALALALQGSGLEVLLLDGGPLSVKPFDP----QAPFEPRVS-AL---SA---ASQRILERLGAWDGI 71 (405)
T ss_pred ccHHHHHHHHHHhcCCCEEEEEcCCCcccccccc----CCCCCccch-hh---hH---HHHHHHHHCChhhhh
Confidence 4569999997 679999999998743221110 000001111 11 22 567899999986544
No 164
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=83.90 E-value=0.92 Score=43.88 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=21.0
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRL 106 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drv 106 (350)
+++|||++|. +.|++|+|+|+.+..
T Consensus 13 gG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 13 GGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 4459999997 679999999998774
No 165
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=83.84 E-value=0.71 Score=45.02 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666 305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH 346 (350)
Q Consensus 305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~ 346 (350)
...+.++|.+.+. .|++|+++++|+.|+..++++.|.+.+|.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~ 190 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQGE 190 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCCE
Confidence 4668888888887 78899999999999887777878777663
No 166
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=83.75 E-value=0.81 Score=45.74 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=26.5
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEe
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVD 342 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~ 342 (350)
+.+.+.+.+. .|++|+++++|++|..+++++.|++
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~ 244 (463)
T TIGR02053 209 ISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITV 244 (463)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEE
Confidence 4556666666 7899999999999988766655554
No 167
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=83.70 E-value=0.9 Score=44.57 Aligned_cols=23 Identities=13% Similarity=-0.047 Sum_probs=19.3
Q ss_pred hHhHhhh---cCCCCEEEEecCCCCC
Q psy7666 85 RILCTVL---RISTPITLLESSSRLG 107 (350)
Q Consensus 85 aGLaaA~---~~G~~VtVlEa~drvG 107 (350)
||++||. ++|++|+|+|+....+
T Consensus 11 AG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 11 AGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 9999996 6799999999876543
No 168
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=83.45 E-value=0.79 Score=51.37 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.2
Q ss_pred hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666 85 RILCTVL---RISTPITLLESSSRLGGWV 110 (350)
Q Consensus 85 aGLaaA~---~~G~~VtVlEa~drvGGRi 110 (350)
|||+||. ++|.+|+|+|+.+.+||..
T Consensus 420 AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 420 AGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred HHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 9999987 5799999999999999964
No 169
>PTZ00367 squalene epoxidase; Provisional
Probab=83.39 E-value=1.6 Score=45.08 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=33.3
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
++++|+++|. ++|++|+|+|+... ...+. ..|. .+ .| +-.+.++++|+.+.+.
T Consensus 41 aGiaGlalA~aLar~G~~V~VlEr~~~--------~~~~r---~~G~-~L---~p---~g~~~L~~LGL~d~l~ 96 (567)
T PTZ00367 41 GSIAGPVLAKALSKQGRKVLMLERDLF--------SKPDR---IVGE-LL---QP---GGVNALKELGMEECAE 96 (567)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEccccc--------cccch---hhhh-hc---CH---HHHHHHHHCCChhhHh
Confidence 3459999987 67999999998641 00010 0111 12 22 5678999999976443
No 170
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=83.37 E-value=1.1 Score=43.43 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=20.5
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRL 106 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drv 106 (350)
++++||++|. ++|++|+|+|+.+..
T Consensus 15 aG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 15 GGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 3459999997 679999999998654
No 171
>PRK07588 hypothetical protein; Provisional
Probab=82.88 E-value=2.8 Score=40.74 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 307 TIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.|.+.|.+.+..|++|+++++|++|+.++++|.|++.+|++++
T Consensus 104 ~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ 146 (391)
T PRK07588 104 DLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRD 146 (391)
T ss_pred HHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEE
Confidence 3555565555545899999999999998889999999998654
No 172
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=82.73 E-value=0.84 Score=44.01 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=26.3
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI 345 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G 345 (350)
.+.+.|++.+. .|++++.+++|++|+.+++++.|++.+|
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~ 185 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG 185 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC
Confidence 45566665555 5677777778888777666666666555
No 173
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=82.69 E-value=0.96 Score=45.22 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=27.3
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEe
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVD 342 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~ 342 (350)
.+.+.+.+.|. .|++|++++.|++|+.++..+.++.
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~ 248 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY 248 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE
Confidence 35666777776 7899999999999987666565553
No 174
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=82.60 E-value=1 Score=43.30 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=29.5
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH 346 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~ 346 (350)
.++.++++.+. .|++|+++++|++|..+++++.|++++|.
T Consensus 150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~ 190 (376)
T PRK11259 150 LAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADGT 190 (376)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCCE
Confidence 35555555555 67888888899998887777888877763
No 175
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=82.14 E-value=1 Score=46.31 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV 338 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv 338 (350)
..+...|.+.+. .|++|.++++|++|..++++|
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v 241 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRV 241 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEE
Confidence 447777877777 789999999999999876653
No 176
>PRK13748 putative mercuric reductase; Provisional
Probab=82.11 E-value=0.89 Score=46.64 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=30.1
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI 345 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G 345 (350)
.+.+.+.+.|. .|++|+++++|++|+.+++++.+.+.++
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~ 350 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG 350 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC
Confidence 35666777777 7899999999999988766777766554
No 177
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=82.09 E-value=0.96 Score=43.67 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.7
Q ss_pred ehhhHhHhhh---cCC-CCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RIS-TPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~G-~~VtVlEa~dr 105 (350)
++++||++|. ++| ++|+|+|+.+.
T Consensus 7 aG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 7 GGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred ccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 5669999997 679 99999999865
No 178
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.06 E-value=1.2 Score=45.40 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=25.9
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
.+|+|| |||+||. +.|++|+|+|. ++||++..
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~ 251 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKD 251 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcccc
Confidence 456666 9999997 67999999984 79998763
No 179
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=81.89 E-value=1.3 Score=46.36 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=19.0
Q ss_pred hhhHhHhhh---cCCCCEEEEecCC
Q psy7666 83 VIRILCTVL---RISTPITLLESSS 104 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~d 104 (350)
+|+||++|+ +.|++|+|||+..
T Consensus 90 GIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 90 GIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CHHHHHHHHHHHhcCCeEEEEeccc
Confidence 349999997 6899999999975
No 180
>PRK14694 putative mercuric reductase; Provisional
Probab=81.53 E-value=1.4 Score=44.19 Aligned_cols=39 Identities=8% Similarity=0.145 Sum_probs=30.1
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI 345 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G 345 (350)
.+.+.+.+.+. .|++|++++.|++|+.+++.+.|.+.++
T Consensus 219 ~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~ 258 (468)
T PRK14694 219 AVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG 258 (468)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC
Confidence 46667777777 7899999999999987766666665544
No 181
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=81.40 E-value=1.1 Score=46.36 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG 337 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g 337 (350)
..|+++|.+.+. .|++|+++++|++|..++++
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~ 249 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGR 249 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE
Confidence 447888888887 89999999999999887664
No 182
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=81.31 E-value=1.3 Score=46.50 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=38.0
Q ss_pred EEEecCcH---HHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666 298 VWSVEGGL---QTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM 348 (350)
Q Consensus 298 ~~~~~GG~---~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~ 348 (350)
++.+.+|. ..++++|.+.+..|++|+.+++|++|+..+++|.|.+.+|..+
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~ 450 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLA 450 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEE
Confidence 44455542 4577777777644689999999999998888888888877654
No 183
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=81.06 E-value=2.3 Score=44.51 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=33.6
Q ss_pred ehhhHhHhhh---c-CCCCEEEEecCCCC--CcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666 82 LVIRILCTVL---R-ISTPITLLESSSRL--GGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152 (350)
Q Consensus 82 ~viaGLaaA~---~-~G~~VtVlEa~drv--GGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~ 152 (350)
|+++||++|. + .|.+|+|+|+++.. .||.. .+ .+ ..+++++.+|+.+.+.
T Consensus 40 AGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~---------------gl---~p---rtleiL~~lGl~d~l~ 95 (634)
T PRK08294 40 CGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD---------------GI---AC---RTMEMFQAFGFAERIL 95 (634)
T ss_pred CCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee---------------EE---Ch---HHHHHHHhccchHHHH
Confidence 3449999987 5 49999999987531 12211 12 23 6789999999876543
No 184
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=81.00 E-value=3.7 Score=39.88 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..+.+.|.+.+. .|++|+++++|++|+.+++++.|+..+|++++
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ 157 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLE 157 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEE
Confidence 456777777776 78999999999999998888999888887654
No 185
>PRK07236 hypothetical protein; Provisional
Probab=80.96 E-value=3.7 Score=39.81 Aligned_cols=45 Identities=13% Similarity=0.030 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 304 GLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 304 G~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+...+.+.|.+.++ +.+|+++++|++|+.++++|+|++.+|++++
T Consensus 98 ~~~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ 142 (386)
T PRK07236 98 SWNVLYRALRAAFP-AERYHLGETLVGFEQDGDRVTARFADGRRET 142 (386)
T ss_pred CHHHHHHHHHHhCC-CcEEEcCCEEEEEEecCCeEEEEECCCCEEE
Confidence 45667778887775 5689999999999998889999999998765
No 186
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=80.94 E-value=3.7 Score=39.89 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..+.+.|.+.+. .|++|+.+++|++|+.+++++.|+..+|.+++
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ 155 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLE 155 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEE
Confidence 357777777776 68999999999999998889999988887654
No 187
>PRK07804 L-aspartate oxidase; Provisional
Probab=80.88 E-value=1.2 Score=45.71 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=22.1
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
++|||+||. ++|.+|+|+|+....||
T Consensus 25 G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 25 GVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred cHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 349999987 46999999999988776
No 188
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=80.85 E-value=2 Score=42.93 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=21.1
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCC
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSS 104 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~d 104 (350)
.+|+|| ||++||. ++|++|+|+|+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 456665 9999996 6799999999874
No 189
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=80.66 E-value=1.3 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=18.4
Q ss_pred ehhhHhHhhh---cC---CCCEEEEecC
Q psy7666 82 LVIRILCTVL---RI---STPITLLESS 103 (350)
Q Consensus 82 ~viaGLaaA~---~~---G~~VtVlEa~ 103 (350)
+++|||++|+ ++ |++|+|+|+.
T Consensus 11 aG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 11 GGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4459999997 45 9999999995
No 190
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=80.65 E-value=1.2 Score=45.77 Aligned_cols=28 Identities=4% Similarity=-0.045 Sum_probs=23.0
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGW 109 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGR 109 (350)
+++|||+||+ ++|.+|+|+|+....||.
T Consensus 7 ~G~AGl~AA~~aae~G~~V~lleK~~~~~g~ 37 (566)
T TIGR01812 7 AGLAGLRAAVEAAKAGLNTAVISKVYPTRSH 37 (566)
T ss_pred ccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence 4459999987 569999999999877664
No 191
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=80.56 E-value=1.2 Score=42.81 Aligned_cols=41 Identities=17% Similarity=0.036 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhc-CC-CEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666 306 QTIVNTLGEHLS-NK-VEVKMDTTCTNLEFLEKGVKAVDQPIH 346 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g-~~I~l~~~V~~I~~~~~gv~V~~~~G~ 346 (350)
..++.++++.+. .| ..+..+++|..+...+..+.|.+.+|.
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~ 198 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT 198 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc
Confidence 568888888887 66 566779999999885345778888776
No 192
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=80.55 E-value=1.3 Score=44.56 Aligned_cols=39 Identities=8% Similarity=0.215 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCC
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQP 344 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~ 344 (350)
..+.+.+.+.|. .|++|++++.|++|+.+++++.|...+
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~ 263 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTD 263 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEe
Confidence 446667777777 789999999999999877777666443
No 193
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=80.49 E-value=3.8 Score=39.97 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..+.+.|.+.+. .|++|+.+++|++|+.++++|.|+..+|++++
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ 156 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLR 156 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEE
Confidence 356677777776 67899999999999998889999988887665
No 194
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=80.46 E-value=4.3 Score=39.49 Aligned_cols=31 Identities=23% Similarity=0.088 Sum_probs=24.7
Q ss_pred ehhhHhHhhh---cC--CCCEEEEecCCCCCcceEE
Q psy7666 82 LVIRILCTVL---RI--STPITLLESSSRLGGWVRS 112 (350)
Q Consensus 82 ~viaGLaaA~---~~--G~~VtVlEa~drvGGRi~T 112 (350)
++|+|+++|+ ++ |++|+|+|+.+.+|+....
T Consensus 10 gGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~ 45 (393)
T PRK11728 10 GGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTG 45 (393)
T ss_pred CcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccc
Confidence 4569999998 45 9999999999888775433
No 195
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=80.43 E-value=1.3 Score=45.77 Aligned_cols=26 Identities=4% Similarity=-0.051 Sum_probs=21.8
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
++|||+||. ++|.+|+|+|+....||
T Consensus 14 G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 14 GLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred cHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 349999998 46999999999987666
No 196
>PTZ00052 thioredoxin reductase; Provisional
Probab=80.34 E-value=1.2 Score=45.04 Aligned_cols=41 Identities=10% Similarity=-0.005 Sum_probs=31.4
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM 348 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~ 348 (350)
+.+.+.+.|. .|+++++++.|++|...++++.|...+|+++
T Consensus 224 ~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i 265 (499)
T PTZ00052 224 CSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTE 265 (499)
T ss_pred HHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEE
Confidence 4566677776 7899999999999987666677777777654
No 197
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=80.17 E-value=1.4 Score=42.40 Aligned_cols=24 Identities=33% Similarity=0.301 Sum_probs=20.0
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
++|+|+++|+ ++|++|+|+|+...
T Consensus 8 ~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 8 AGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4569999998 57999999999754
No 198
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=80.11 E-value=1.4 Score=43.64 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=23.4
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCC--CCcce
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSR--LGGWV 110 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~dr--vGGRi 110 (350)
+.+|||+||+ ++|.+|+|+|+.+. .||-.
T Consensus 4 ~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s 37 (432)
T TIGR02485 4 GGLAGLCAAIEARRAGASVLLLEAAPRARRGGNA 37 (432)
T ss_pred ccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCc
Confidence 5679999987 57999999999884 56643
No 199
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=79.91 E-value=1.3 Score=45.70 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG 337 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g 337 (350)
..|+.+|.+.+. .|++|+++++|+++..++++
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~ 253 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGR 253 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCE
Confidence 358888888887 78999999999998876554
No 200
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=79.88 E-value=1.4 Score=44.27 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=33.0
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+.+.+.+.|. .|++|+++++|++|+.+++++.|...+|++++
T Consensus 220 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~ 262 (466)
T PRK07845 220 AAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVE 262 (466)
T ss_pred HHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEE
Confidence 5556666776 78999999999999887778888877776553
No 201
>PRK06847 hypothetical protein; Provisional
Probab=79.69 E-value=4.3 Score=39.02 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=34.9
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.+.+.|.+.+. .|++|+++++|++|+.+++++.|++.+|++++
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 151 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGR 151 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEE
Confidence 35666666665 67899999999999998888999888887654
No 202
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=79.55 E-value=2.9 Score=41.65 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhc--CCCEEEeCcceeEEEEeCCe-EEEEeC
Q psy7666 305 LQTIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKG-VKAVDQ 343 (350)
Q Consensus 305 ~~~L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~g-v~V~~~ 343 (350)
++.|.+.|.+.+. .|.+|++++.|+.|.+.+++ |.|+..
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~ 221 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVK 221 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEE
Confidence 6789999999997 48999999999999999877 888763
No 203
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=79.44 E-value=1.3 Score=46.09 Aligned_cols=26 Identities=4% Similarity=-0.113 Sum_probs=21.7
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLG 107 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvG 107 (350)
+++|||+||. ++|.+|+|+|+.+.+|
T Consensus 6 ~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 6 TGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred ccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 4569999998 4699999999998664
No 204
>PRK05868 hypothetical protein; Validated
Probab=79.25 E-value=4.6 Score=39.17 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=33.1
Q ss_pred HHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
|.+.|.+.+..|++|+++++|+.|+.++++|+|+..+|++++
T Consensus 107 L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~ 148 (372)
T PRK05868 107 LVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAARE 148 (372)
T ss_pred HHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEE
Confidence 445555444457899999999999988888999999988764
No 205
>PTZ00058 glutathione reductase; Provisional
Probab=78.78 E-value=1.9 Score=44.42 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=28.2
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCC-eEEEEeCCC
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK-GVKAVDQPI 345 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~-gv~V~~~~G 345 (350)
.+.+.+.+.|. .|++|++++.|++|..+++ ++.+...++
T Consensus 279 ~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~ 319 (561)
T PTZ00058 279 TIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDG 319 (561)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCC
Confidence 35666777777 7899999999999987543 465554333
No 206
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=78.68 E-value=1.6 Score=45.33 Aligned_cols=27 Identities=11% Similarity=-0.085 Sum_probs=22.4
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
+++|||+||+ ++|.+|+|+|+....||
T Consensus 15 ~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 15 AGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 3459999987 46999999999987776
No 207
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=78.59 E-value=1.4 Score=42.98 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=18.6
Q ss_pred hhhHhHhhh---cCCCCEEEEecC
Q psy7666 83 VIRILCTVL---RISTPITLLESS 103 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~ 103 (350)
+++||++|. ++|++|+|+|++
T Consensus 11 G~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 11 GPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CHHHHHHHHHHHhCCCcEEEEccC
Confidence 449999987 689999999997
No 208
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=78.29 E-value=4.9 Score=38.72 Aligned_cols=44 Identities=9% Similarity=0.059 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..+.+.|.+.+. .|++++++++|++|..++++|.|+..+|.+++
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ 150 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLR 150 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEE
Confidence 457778887776 38999999999999988888999888887654
No 209
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=78.16 E-value=6.4 Score=36.92 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=37.7
Q ss_pred EEEecCc---HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE-EEEeCCC
Q psy7666 298 VWSVEGG---LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV-KAVDQPI 345 (350)
Q Consensus 298 ~~~~~GG---~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv-~V~~~~G 345 (350)
++.+.+| ...+...+++.+. .|++|+.+++|+.|..++++| .|.+.+|
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g 178 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG 178 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC
Confidence 4445555 4678888988887 899999999999999887775 4676666
No 210
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=77.94 E-value=1.8 Score=46.37 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=19.6
Q ss_pred ehhhHhHhhh---cC--CCCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RI--STPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~--G~~VtVlEa~dr 105 (350)
+++|||+||. ++ |++|+|+|+++.
T Consensus 8 aGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 8 GGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 3449999997 44 899999999875
No 211
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=77.86 E-value=2.2 Score=43.43 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=25.9
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
.+|+|| |||+||. +.|++|+|+|. ++||++..
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~ 250 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLD 250 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeec
Confidence 456666 9999997 67999999975 59998863
No 212
>PLN02815 L-aspartate oxidase
Probab=77.78 E-value=2.6 Score=43.76 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=21.1
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
++|||+||+ ++| +|+|+|+....||
T Consensus 38 G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 38 GIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred cHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 349999987 468 9999999998887
No 213
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=77.50 E-value=1.8 Score=42.16 Aligned_cols=22 Identities=18% Similarity=-0.062 Sum_probs=18.8
Q ss_pred ehhhHhHhhh---cCCCCEEEEecC
Q psy7666 82 LVIRILCTVL---RISTPITLLESS 103 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~ 103 (350)
|+.||++||+ ++|++|+|+|+.
T Consensus 8 aGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 8 GGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEECC
Confidence 3449999997 679999999997
No 214
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=77.39 E-value=1.8 Score=45.39 Aligned_cols=25 Identities=0% Similarity=-0.092 Sum_probs=20.6
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCC
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLG 107 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvG 107 (350)
++|||+||. ++|.+|+|+|+...+|
T Consensus 44 G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 44 GLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred cHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 349999987 4699999999977765
No 215
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=77.38 E-value=5.3 Score=38.35 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhc-CC-CEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLS-NK-VEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g-~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..+.+.|.+.+. .| ++|+.+++|++|..++++|.|++.+|.+++
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 151 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLR 151 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEE
Confidence 356677777765 44 899999999999998888999988887654
No 216
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=77.15 E-value=1.8 Score=44.91 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=21.1
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
++|||+||. ++|.+|+|+|+....||
T Consensus 21 G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 21 GGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred cHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 349999987 46999999999876665
No 217
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=76.83 E-value=5.2 Score=39.22 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..|.+.|.+.++ ++.|+++++|++|+.++++|.|++.+|.+++
T Consensus 105 ~~l~~~L~~~~~-~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 147 (414)
T TIGR03219 105 ADFLDALLKHLP-EGIASFGKRATQIEEQAEEVQVLFTDGTEYR 147 (414)
T ss_pred HHHHHHHHHhCC-CceEEcCCEEEEEEecCCcEEEEEcCCCEEE
Confidence 347788888875 4679999999999998889999998887654
No 218
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=76.83 E-value=1.8 Score=42.97 Aligned_cols=27 Identities=11% Similarity=-0.063 Sum_probs=21.9
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGGW 109 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGGR 109 (350)
+++|+.||+ +.|++|+|+|.++.+|-.
T Consensus 9 GlAGleaA~~LAr~G~~V~LiE~rp~~~~p 38 (433)
T TIGR00137 9 GLAGSEAAWQLAQAGVPVILYEMRPEKLTP 38 (433)
T ss_pred CHHHHHHHHHHHhCCCcEEEEeccccccCc
Confidence 348999987 679999999998876553
No 219
>PRK07190 hypothetical protein; Provisional
Probab=76.34 E-value=2.8 Score=42.36 Aligned_cols=29 Identities=10% Similarity=-0.079 Sum_probs=22.7
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCC--CcceE
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRL--GGWVR 111 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drv--GGRi~ 111 (350)
+.+||++|. ++|.+|+|+|+.+.. +||+.
T Consensus 14 GPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~ 47 (487)
T PRK07190 14 GPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRAD 47 (487)
T ss_pred CHHHHHHHHHHHHcCCCEEEEeCCCcccccccce
Confidence 349999987 679999999998763 56653
No 220
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=76.30 E-value=2 Score=44.85 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=26.3
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEe
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFE 122 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D 122 (350)
+|||+||+ ++|.+|+|+|+....||- |..-.+|+...
T Consensus 39 ~AGl~AAi~Aa~~G~~V~lveK~~~~~g~--t~~a~Ggi~a~ 78 (617)
T PTZ00139 39 GAGLRAALGLVELGYKTACISKLFPTRSH--TVAAQGGINAA 78 (617)
T ss_pred HHHHHHHHHHHHcCCcEEEEeccCCCCCC--chhhcCCeeEE
Confidence 49999988 469999999999887773 33213555443
No 221
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=76.03 E-value=2.1 Score=44.88 Aligned_cols=26 Identities=4% Similarity=-0.234 Sum_probs=21.9
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
++|||+||+ ++|.+|+|+|+..-.||
T Consensus 59 G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 59 GGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred cHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 349999987 46999999999987776
No 222
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=76.02 E-value=2.1 Score=41.67 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=24.9
Q ss_pred ehhhHhHhhh---cC--CCCEEEEecCCCCCc-ceEEE
Q psy7666 82 LVIRILCTVL---RI--STPITLLESSSRLGG-WVRSV 113 (350)
Q Consensus 82 ~viaGLaaA~---~~--G~~VtVlEa~drvGG-Ri~T~ 113 (350)
+++|||++|+ ++ |.+|+|+|+++.+|| +.+++
T Consensus 7 aG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~ 44 (370)
T TIGR01789 7 GGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSF 44 (370)
T ss_pred ccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCccccee
Confidence 5569999987 33 999999999998887 44443
No 223
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=76.02 E-value=2 Score=41.53 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=25.9
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
++++++ .||-+|. ++|++|+|+|+.+++||+..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 445555 6666665 68999999999999999865
No 224
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=75.96 E-value=2.9 Score=40.85 Aligned_cols=40 Identities=5% Similarity=-0.052 Sum_probs=27.7
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEe-CCe-EEEEeCCCc
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFL-EKG-VKAVDQPIH 346 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~-~~g-v~V~~~~G~ 346 (350)
.+..+|++.+. .|+++..+++|++|+.. +++ +.|.+.+|.
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~ 226 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGF 226 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCce
Confidence 45666666666 78888888899988764 344 346666664
No 225
>PRK06753 hypothetical protein; Provisional
Probab=75.75 E-value=6.5 Score=37.73 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..|.+.|.+.+. +.+|+++++|++|+.++++|.|++.+|+++.
T Consensus 98 ~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ 140 (373)
T PRK06753 98 QTLIDIIKSYVK-EDAIFTGKEVTKIENETDKVTIHFADGESEA 140 (373)
T ss_pred HHHHHHHHHhCC-CceEEECCEEEEEEecCCcEEEEECCCCEEe
Confidence 346667777765 4689999999999988888999999887654
No 226
>PRK09897 hypothetical protein; Provisional
Probab=75.56 E-value=2.5 Score=43.23 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=26.9
Q ss_pred ceeehh----hHhHhhhc-----CCCCEEEEecCCCCC-cceEEE
Q psy7666 79 LLLLVI----RILCTVLR-----ISTPITLLESSSRLG-GWVRSV 113 (350)
Q Consensus 79 ~~v~vi----aGLaaA~~-----~G~~VtVlEa~drvG-GRi~T~ 113 (350)
++|||| +||++|.+ ...+|+|||.+..+| |++.+-
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~ 46 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSD 46 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecC
Confidence 457777 88988862 246899999999999 776553
No 227
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=75.47 E-value=2 Score=43.03 Aligned_cols=40 Identities=20% Similarity=0.066 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH 346 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~ 346 (350)
..++..|++.+. .|++|+.+++|+.|+. ++.+.|++.+|.
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g~ 223 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDGQ 223 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCcE
Confidence 446666666665 6777777777777764 344566666654
No 228
>PLN02507 glutathione reductase
Probab=75.23 E-value=2.3 Score=43.17 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=33.2
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+.+.+.+.|. .|++|++++.|++|+.+++++.|.+.+|+++.
T Consensus 246 ~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~ 288 (499)
T PLN02507 246 MRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFV 288 (499)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEE
Confidence 5556666676 78999999999999987777888877776553
No 229
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=75.16 E-value=2.2 Score=43.37 Aligned_cols=38 Identities=8% Similarity=-0.075 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ 343 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~ 343 (350)
..++.++++... .|++|..+++|++|..++++|.|+..
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~ 193 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLE 193 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEE
Confidence 345556665555 68888888888888877766666554
No 230
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=75.07 E-value=5.9 Score=38.40 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=34.0
Q ss_pred HHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
|-..|.+.+. +|++|+.+++|++|+.++++++|+..+|.+++
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ 155 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIE 155 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEE
Confidence 4445655554 57899999999999999899999999998765
No 231
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=74.85 E-value=3 Score=42.70 Aligned_cols=27 Identities=4% Similarity=-0.098 Sum_probs=21.2
Q ss_pred hhhHhHhhh--cCCCCEEEEecCCC-CCcc
Q psy7666 83 VIRILCTVL--RISTPITLLESSSR-LGGW 109 (350)
Q Consensus 83 viaGLaaA~--~~G~~VtVlEa~dr-vGGR 109 (350)
++|||+||. ++|.+|+|+|+... .||.
T Consensus 16 G~AGl~AAi~A~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 16 GGAGARAAIEAERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred cHHHHHHHHHHhcCCCEEEEEccCCCCCcc
Confidence 349999987 46999999999865 4554
No 232
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=74.76 E-value=2 Score=41.65 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=19.5
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
++++||++|. ++|++|+|+|+...
T Consensus 13 gG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 13 GGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 3459999987 67999999998753
No 233
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=74.63 E-value=7.2 Score=37.95 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEeC-CCceec
Q psy7666 304 GLQTIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVDQ-PIHQMT 349 (350)
Q Consensus 304 G~~~L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~~-~G~~~~ 349 (350)
....|.+.|.+.+. ++++++.++.|+.|+.++++|.|+.. +|++++
T Consensus 102 ~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~ 150 (387)
T COG0654 102 PRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLD 150 (387)
T ss_pred EhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEe
Confidence 35668888888886 45899999999999999999888888 998765
No 234
>PRK08071 L-aspartate oxidase; Provisional
Probab=74.57 E-value=2.4 Score=43.16 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=23.0
Q ss_pred ehhhHhHhhh--cCCCCEEEEecCCCCCcc
Q psy7666 82 LVIRILCTVL--RISTPITLLESSSRLGGW 109 (350)
Q Consensus 82 ~viaGLaaA~--~~G~~VtVlEa~drvGGR 109 (350)
+++|||+||. +.|.+|+|+|+.+-.||.
T Consensus 11 ~G~AGl~AAl~a~~g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 11 SGIAALTVAKELCHEYNVIIITKKTKRNSN 40 (510)
T ss_pred ccHHHHHHHHHhhcCCCEEEEeccCCCCCC
Confidence 3459999998 348999999999887774
No 235
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=74.28 E-value=2.7 Score=39.79 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=26.5
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEe
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQ 114 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~ 114 (350)
+|+|| |||+||. +++.+++|++..+.+||......
T Consensus 5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 35555 9999997 67889666666778898877765
No 236
>PRK09126 hypothetical protein; Provisional
Probab=74.18 E-value=7.2 Score=37.70 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=33.7
Q ss_pred HHHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.+-+.|.+.+. .|++|+.+++|++|+.+++++.|++.+|++++
T Consensus 111 ~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ 155 (392)
T PRK09126 111 LIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLT 155 (392)
T ss_pred HHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEE
Confidence 35555655553 57999999999999988888889888887654
No 237
>PRK06185 hypothetical protein; Provisional
Probab=74.14 E-value=2.7 Score=41.00 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=19.3
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 83 VIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
+++||++|. ++|++|+|+|+.+.
T Consensus 15 G~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 15 GPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred CHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 449999987 67999999999853
No 238
>PRK08013 oxidoreductase; Provisional
Probab=73.98 E-value=6.9 Score=38.19 Aligned_cols=43 Identities=9% Similarity=0.014 Sum_probs=34.6
Q ss_pred HHHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.|-+.|.+.+. +|++|+++++|+.|+.+++++.|+..+|++++
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 156 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLT 156 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEE
Confidence 35556666665 47899999999999998889999988887764
No 239
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=73.90 E-value=2.6 Score=41.81 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=19.9
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCC
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLG 107 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvG 107 (350)
.+|+.||+ +.|++|+|+|+++...
T Consensus 12 lAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 12 LAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred HHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 49999987 6799999999876654
No 240
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=73.74 E-value=2.9 Score=42.88 Aligned_cols=24 Identities=8% Similarity=-0.276 Sum_probs=19.4
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
++|.|+++|+ +.|.+|+|+|+.+-
T Consensus 14 GGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 14 GGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 3458999998 56999999999764
No 241
>PRK08401 L-aspartate oxidase; Provisional
Probab=73.69 E-value=2.6 Score=42.25 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=19.1
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 83 VIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
++|||+||. ++|.+|+|+|+...
T Consensus 10 G~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 10 GLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 349999987 46999999999864
No 242
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=73.04 E-value=8.2 Score=37.07 Aligned_cols=28 Identities=14% Similarity=-0.085 Sum_probs=22.2
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGW 109 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGR 109 (350)
++|.|+++|+ +.|.+|+|+|+.+..++.
T Consensus 8 aGi~G~s~A~~La~~g~~V~l~e~~~~~~~~ 38 (380)
T TIGR01377 8 AGIMGCFAAYHLAKHGKKTLLLEQFDLPHSR 38 (380)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeccCCCCCC
Confidence 4569999998 569999999997765443
No 243
>PRK06834 hypothetical protein; Provisional
Probab=72.85 E-value=8 Score=39.08 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=33.7
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+-+.|.+.+. .|++|+.+++|++|+.++++|.|+..+|.+++
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ 144 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLR 144 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEE
Confidence 5555666665 57999999999999999889999888876554
No 244
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=72.49 E-value=2.8 Score=43.52 Aligned_cols=26 Identities=8% Similarity=-0.172 Sum_probs=21.1
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
++|||+||+ ++|.+|+|+|+..-.||
T Consensus 21 G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 21 GGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred cHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 349999997 46999999999876655
No 245
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=72.09 E-value=9.7 Score=37.19 Aligned_cols=45 Identities=7% Similarity=-0.051 Sum_probs=35.4
Q ss_pred EEEe-cCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCC
Q psy7666 298 VWSV-EGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQP 344 (350)
Q Consensus 298 ~~~~-~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~ 344 (350)
-.+| ..-...++++|.+.+. .|++|+++++|++| +++++.|.+.+
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~ 123 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPD 123 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECC
Confidence 3445 4567789999999998 89999999999999 34457776643
No 246
>PRK11445 putative oxidoreductase; Provisional
Probab=71.74 E-value=3.1 Score=39.95 Aligned_cols=24 Identities=4% Similarity=-0.129 Sum_probs=19.5
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRL 106 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drv 106 (350)
+++|||++|. ++ ++|+|+|+.+..
T Consensus 9 aGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 9 LGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 3459999987 56 999999998764
No 247
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.34 E-value=3.9 Score=41.47 Aligned_cols=26 Identities=15% Similarity=-0.037 Sum_probs=20.6
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
+|.|+++|+ ++|.+|+|+|+.|-.+|
T Consensus 15 Gi~G~~~A~~la~rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 15 GINGAGIARDAAGRGLKVLLCEKDDLAQG 43 (502)
T ss_pred CHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 458999988 57999999999975433
No 248
>PLN02463 lycopene beta cyclase
Probab=70.89 E-value=4.6 Score=40.38 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=18.4
Q ss_pred hhHhHhhh---cCCCCEEEEecCCC
Q psy7666 84 IRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~dr 105 (350)
.|||++|. ++|.+|+|+|++..
T Consensus 38 pAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 38 PAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred HHHHHHHHHHHHCCCeEEEeccCcc
Confidence 39999986 57999999998753
No 249
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=70.69 E-value=12 Score=39.25 Aligned_cols=31 Identities=19% Similarity=0.005 Sum_probs=24.0
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
++|+|+++|+ ++|++|+|+|+.+.+|+.+..
T Consensus 268 aGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg 301 (662)
T PRK01747 268 GGIAGAALALALARRGWQVTLYEADEAPAQGASG 301 (662)
T ss_pred ccHHHHHHHHHHHHCCCeEEEEecCCCccccCCc
Confidence 3459999998 579999999998777654433
No 250
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=70.65 E-value=2.9 Score=43.33 Aligned_cols=28 Identities=11% Similarity=-0.020 Sum_probs=21.8
Q ss_pred ehhhHhHhhhc---C--CCCEEEEecCCCCCcc
Q psy7666 82 LVIRILCTVLR---I--STPITLLESSSRLGGW 109 (350)
Q Consensus 82 ~viaGLaaA~~---~--G~~VtVlEa~drvGGR 109 (350)
+++|||+||.. + |.+|+|+|+....||.
T Consensus 12 ~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~ 44 (582)
T PRK09231 12 AGGAGLRAAIAAAEANPNLKIALISKVYPMRSH 44 (582)
T ss_pred ccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 34599999983 2 5799999999887773
No 251
>PLN02546 glutathione reductase
Probab=70.50 E-value=3.1 Score=42.82 Aligned_cols=39 Identities=8% Similarity=0.086 Sum_probs=27.1
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCC-eEEEEeCCCc
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEK-GVKAVDQPIH 346 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~-gv~V~~~~G~ 346 (350)
+.+.+.+.|. .|++|++++.|.+|...++ .+.|.+.++.
T Consensus 295 ~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~ 335 (558)
T PLN02546 295 VRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGT 335 (558)
T ss_pred HHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeE
Confidence 4445666676 7899999999999986533 4556555443
No 252
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=70.44 E-value=2.9 Score=42.23 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=34.2
Q ss_pred EEEecCc---HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC-eEEEE
Q psy7666 298 VWSVEGG---LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK-GVKAV 341 (350)
Q Consensus 298 ~~~~~GG---~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~-gv~V~ 341 (350)
++.+.+| ...+..+|++.+. .|++|+++++|++|+.+++ +|.|+
T Consensus 167 l~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~ 215 (483)
T TIGR01320 167 NWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVT 215 (483)
T ss_pred EEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEE
Confidence 4555555 4668889988887 8999999999999998654 57665
No 253
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=70.40 E-value=3.2 Score=42.93 Aligned_cols=27 Identities=7% Similarity=0.099 Sum_probs=22.0
Q ss_pred hhhHhHhhh---cCC---CCEEEEecCCCCCcc
Q psy7666 83 VIRILCTVL---RIS---TPITLLESSSRLGGW 109 (350)
Q Consensus 83 viaGLaaA~---~~G---~~VtVlEa~drvGGR 109 (350)
++|||+||. ++| .+|+|+|+....||.
T Consensus 14 G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 14 GLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred cHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 349999988 457 899999999877764
No 254
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=70.34 E-value=3.4 Score=43.45 Aligned_cols=27 Identities=7% Similarity=-0.069 Sum_probs=21.8
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
+++|||+||. ++|.+|+|+|+....||
T Consensus 13 ~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 13 AGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred ccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 3459999987 46999999999877555
No 255
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=70.18 E-value=10 Score=37.07 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=34.8
Q ss_pred HHHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.+.+.|.+.+. .|++|+++++|++|+.+++++.|+..+|++++
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 156 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALT 156 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEE
Confidence 35556666664 47899999999999998888999998988765
No 256
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=70.04 E-value=3.5 Score=41.66 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=21.5
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGW 109 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGR 109 (350)
+++|||+||+ +.|. |+|+|+.+..||.
T Consensus 10 ~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 10 SGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred ccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 3459999987 4577 9999999877774
No 257
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=70.01 E-value=12 Score=36.41 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=22.4
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGGWV 110 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGGRi 110 (350)
+|.|+++|+ ++|++|+|+|+.+.+|+-+
T Consensus 10 G~~G~~~A~~La~~g~~V~vle~~~~~~~~a 40 (410)
T PRK12409 10 GITGVTTAYALAQRGYQVTVFDRHRYAAMET 40 (410)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence 458999998 5699999999988776433
No 258
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=69.56 E-value=3.3 Score=41.85 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCcee
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQM 348 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~ 348 (350)
..+.+.+.+.|. .|++|++++.|++|..++++ +.|++.+|..+
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i 275 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTL 275 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEE
Confidence 346677777887 88999999999999876444 56666666544
No 259
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=69.53 E-value=3.9 Score=42.25 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=21.1
Q ss_pred ehhhHhHhhhc---C--CCCEEEEecCCCCCc
Q psy7666 82 LVIRILCTVLR---I--STPITLLESSSRLGG 108 (350)
Q Consensus 82 ~viaGLaaA~~---~--G~~VtVlEa~drvGG 108 (350)
+++|||+||+. + |.+|+|+|+....||
T Consensus 11 ~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 11 GGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred ccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 34599999983 2 489999999877666
No 260
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=68.99 E-value=3.6 Score=42.89 Aligned_cols=25 Identities=4% Similarity=-0.036 Sum_probs=19.8
Q ss_pred hhhHhHhhh---cC--CCCEEEEecCCCCC
Q psy7666 83 VIRILCTVL---RI--STPITLLESSSRLG 107 (350)
Q Consensus 83 viaGLaaA~---~~--G~~VtVlEa~drvG 107 (350)
++|||+||. ++ |.+|+|+|+.+..|
T Consensus 20 G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 20 GMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 349999987 44 89999999987543
No 261
>PRK07190 hypothetical protein; Provisional
Probab=68.80 E-value=12 Score=37.93 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=33.0
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+-+.|.+.+. .|++|+++++|+.|+.+++++.|+..+|++++
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~ 153 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQ 153 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEE
Confidence 4445555555 68999999999999999889888888877654
No 262
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=68.45 E-value=12 Score=36.29 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=34.1
Q ss_pred HHHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.+-+.|.+.+. +|++|+.+++|+.|+.+++++.|+..+|++++
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ 157 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQ 157 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEE
Confidence 35566666654 48899999999999988888999888887664
No 263
>PRK08163 salicylate hydroxylase; Provisional
Probab=68.30 E-value=11 Score=36.56 Aligned_cols=42 Identities=29% Similarity=0.229 Sum_probs=33.3
Q ss_pred HHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+.+.|.+.+. .+++|+++++|++|..++++|.|++.+|++++
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ 154 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWT 154 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEe
Confidence 5566666664 34899999999999988888999988887654
No 264
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=68.29 E-value=3.4 Score=42.79 Aligned_cols=29 Identities=7% Similarity=-0.043 Sum_probs=22.6
Q ss_pred ehhhHhHhhhc---C--CCCEEEEecCCCCCcce
Q psy7666 82 LVIRILCTVLR---I--STPITLLESSSRLGGWV 110 (350)
Q Consensus 82 ~viaGLaaA~~---~--G~~VtVlEa~drvGGRi 110 (350)
+++|||+||+. + |.+|+|+|+....||..
T Consensus 11 ~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 11 AGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 34599999983 2 58999999998877743
No 265
>PRK07512 L-aspartate oxidase; Provisional
Probab=68.12 E-value=4.1 Score=41.45 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.7
Q ss_pred hhhHhHhhh-cCCCCEEEEecCCC-CCc
Q psy7666 83 VIRILCTVL-RISTPITLLESSSR-LGG 108 (350)
Q Consensus 83 viaGLaaA~-~~G~~VtVlEa~dr-vGG 108 (350)
++|||+||. .+|.+|+|+|+.+. .||
T Consensus 18 G~AGl~AAl~Aa~~~V~lleK~~~~~gg 45 (513)
T PRK07512 18 GLAGLMAALKLAPRPVVVLSPAPLGEGA 45 (513)
T ss_pred hHHHHHHHHHhCcCCEEEEECCCCCCCc
Confidence 459999998 45889999999886 344
No 266
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=68.07 E-value=3.8 Score=40.65 Aligned_cols=24 Identities=13% Similarity=-0.060 Sum_probs=19.3
Q ss_pred ehhhHhHhhh---c----CCCCEEEEecCCC
Q psy7666 82 LVIRILCTVL---R----ISTPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~----~G~~VtVlEa~dr 105 (350)
++++||++|+ + +|++|+|+|+++.
T Consensus 8 aGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 8 GGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 5569999987 4 5999999999543
No 267
>PRK08275 putative oxidoreductase; Provisional
Probab=67.85 E-value=3.3 Score=42.56 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=19.2
Q ss_pred hhhHhHhhhc---C--CCCEEEEecCCCC
Q psy7666 83 VIRILCTVLR---I--STPITLLESSSRL 106 (350)
Q Consensus 83 viaGLaaA~~---~--G~~VtVlEa~drv 106 (350)
++|||+||.. + |.+|+|+|+.+..
T Consensus 18 G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 18 GTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 3499999983 2 6899999999864
No 268
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=67.66 E-value=4.1 Score=42.31 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.1
Q ss_pred hHhHhhh---cCCCCEEEEecC-CCCCcc
Q psy7666 85 RILCTVL---RISTPITLLESS-SRLGGW 109 (350)
Q Consensus 85 aGLaaA~---~~G~~VtVlEa~-drvGGR 109 (350)
||+.||. +.|.+|.|+|.. +.+|+.
T Consensus 15 AG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 15 AGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred HHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 9999987 579999999998 577764
No 269
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=67.51 E-value=13 Score=35.94 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=32.3
Q ss_pred HHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+-+.|.+.+. .|++|+++++|++|..++++|.|++.+|.+++
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ 157 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLT 157 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEE
Confidence 4455555553 47899999999999988888999888886553
No 270
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=67.45 E-value=17 Score=30.42 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCEEE-eCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLSNKVEVK-MDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~~g~~I~-l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..+.+.+.++.|++|+ ...+|+.|+..++++.|.+.+|..++
T Consensus 103 ~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~ 145 (156)
T PF13454_consen 103 RFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIR 145 (156)
T ss_pred HHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEE
Confidence 4444554444344443 67799999999999999999998764
No 271
>PRK07045 putative monooxygenase; Reviewed
Probab=67.34 E-value=12 Score=36.24 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=33.4
Q ss_pred HHHHHHHHhhc--CCCEEEeCcceeEEEEeCCe--EEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKG--VKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~g--v~V~~~~G~~~~ 349 (350)
.|.+.|.+.+. +|++|+++++|+.|+.++++ +.|+..+|++++
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~ 153 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVA 153 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEE
Confidence 46666777664 57899999999999987665 478888887664
No 272
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=66.82 E-value=18 Score=35.44 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC
Q psy7666 303 GGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ 343 (350)
Q Consensus 303 GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~ 343 (350)
.....+.+.|.+.+. .|++|+++++|++|..+++.+.|++.
T Consensus 102 ~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~ 143 (400)
T TIGR00275 102 DSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETS 143 (400)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEEC
Confidence 446779999999888 88999999999999887777877764
No 273
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=66.59 E-value=13 Score=35.56 Aligned_cols=27 Identities=11% Similarity=-0.207 Sum_probs=21.7
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
++|.|+++|+ +.|++|+|+|+.+..++
T Consensus 11 gGi~G~s~A~~L~~~g~~V~lie~~~~~~~ 40 (376)
T PRK11259 11 LGSMGSAAGYYLARRGLRVLGLDRFMPPHQ 40 (376)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEecccCCCC
Confidence 4569999998 57999999999875443
No 274
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=66.51 E-value=4.4 Score=42.63 Aligned_cols=33 Identities=9% Similarity=0.137 Sum_probs=25.6
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecC-CCCCcceEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESS-SRLGGWVRS 112 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~-drvGGRi~T 112 (350)
.|+|| +|++||. +.|.+|+|+|+. +.+||-|-.
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 46666 8999987 579999999974 478986544
No 275
>PRK09077 L-aspartate oxidase; Provisional
Probab=66.15 E-value=4.3 Score=41.58 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=21.6
Q ss_pred hhhHhHhhhc--CCCCEEEEecCCCCCcc
Q psy7666 83 VIRILCTVLR--ISTPITLLESSSRLGGW 109 (350)
Q Consensus 83 viaGLaaA~~--~G~~VtVlEa~drvGGR 109 (350)
++|||+||.. .+.+|+|+|+....||.
T Consensus 17 G~AGl~AA~~aa~~~~VilveK~~~~~g~ 45 (536)
T PRK09077 17 GAAGLSLALRLAEHRRVAVLSKGPLSEGS 45 (536)
T ss_pred hHHHHHHHHHHHHCCCEEEEeccCCCCCC
Confidence 4499999872 34899999999887873
No 276
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=65.23 E-value=5 Score=40.05 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+.+.+.+.+..|.++++++.|++|+.+++++.|+..+|++++
T Consensus 212 ~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ 253 (452)
T TIGR03452 212 ISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVT 253 (452)
T ss_pred HHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEE
Confidence 333443322356899999999999987777888877776543
No 277
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=64.83 E-value=13 Score=37.05 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=19.6
Q ss_pred hhhHhHhhh---cC--CCCEEEEecCCCCCcc
Q psy7666 83 VIRILCTVL---RI--STPITLLESSSRLGGW 109 (350)
Q Consensus 83 viaGLaaA~---~~--G~~VtVlEa~drvGGR 109 (350)
+|.||++|+ ++ |.+|+|||+. ++|+-
T Consensus 33 Gi~Gls~A~~La~~~~G~~V~vlE~~-~~g~G 63 (460)
T TIGR03329 33 GFTGLWTAIMIKQQRPALDVLVLEAD-LCGAG 63 (460)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEeCC-ccccc
Confidence 348999997 34 8999999985 55543
No 278
>PRK07846 mycothione reductase; Reviewed
Probab=64.79 E-value=4.9 Score=40.13 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+.+.+.+.+..|++++++++|++|+.+++++.|++.+|+.+.
T Consensus 209 ~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 250 (451)
T PRK07846 209 ISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVE 250 (451)
T ss_pred HHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEee
Confidence 333343333356899999999999887777888877776553
No 279
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=64.74 E-value=15 Score=35.76 Aligned_cols=31 Identities=3% Similarity=-0.082 Sum_probs=23.7
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 82 LVIRILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
++|+||++|+ ++|++|+|+|+...+|..+..
T Consensus 8 ~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS~ 41 (416)
T PRK00711 8 SGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSF 41 (416)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCCchhhhhee
Confidence 3458999998 579999999998666655444
No 280
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=64.26 E-value=6.8 Score=39.28 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=34.4
Q ss_pred cHHH-HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666 304 GLQT-IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH 346 (350)
Q Consensus 304 G~~~-L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~ 346 (350)
+.+. +.+.+.+.|. .|.+|+++++|++++..++++.|+.++|+
T Consensus 211 ~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~ 255 (454)
T COG1249 211 GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGE 255 (454)
T ss_pred cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCC
Confidence 4444 5666677776 67999999999999998887888888776
No 281
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=64.19 E-value=13 Score=37.60 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhc-CC-CEEEeCcceeEEEEeCCe-EEEEe
Q psy7666 305 LQTIVNTLGEHLS-NK-VEVKMDTTCTNLEFLEKG-VKAVD 342 (350)
Q Consensus 305 ~~~L~~aLa~~L~-~g-~~I~l~~~V~~I~~~~~g-v~V~~ 342 (350)
...+.++|++.+. .| ++|+++++|++|+.++++ |.|+.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~ 222 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTV 222 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEE
Confidence 5678889988887 55 799999999999986664 76654
No 282
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=63.87 E-value=17 Score=36.08 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=27.0
Q ss_pred eehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 81 LLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
|+|| ||++||. +.|++|+|+|+.+++||.+..
T Consensus 8 vvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 8 LVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 5555 9999987 579999999999999998744
No 283
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=62.74 E-value=7.5 Score=28.46 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=14.2
Q ss_pred cCCCCEEEEecCCCCC
Q psy7666 92 RISTPITLLESSSRLG 107 (350)
Q Consensus 92 ~~G~~VtVlEa~drvG 107 (350)
+.|.+|+|+|+++++.
T Consensus 20 ~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 20 ELGKEVTLIERSDRLL 35 (80)
T ss_dssp HTTSEEEEEESSSSSS
T ss_pred HhCcEEEEEeccchhh
Confidence 6799999999999865
No 284
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=62.45 E-value=6.9 Score=37.51 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=23.3
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCC--CCCcceE
Q psy7666 82 LVIRILCTVL---RISTPITLLESSS--RLGGWVR 111 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~d--rvGGRi~ 111 (350)
|.+|||.||- .+|.+|.|+|... .+||.+.
T Consensus 13 aglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 13 AGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred ccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 5569998886 5799999998764 4788653
No 285
>KOG2404|consensus
Probab=62.36 E-value=5.7 Score=37.88 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=22.9
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWV 110 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi 110 (350)
+|||+|+. ..|-.|+++|+...+||..
T Consensus 19 LAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 19 LAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred hhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 39999986 4677799999999999974
No 286
>PRK06184 hypothetical protein; Provisional
Probab=61.61 E-value=16 Score=36.81 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=31.2
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEe---CCCceec
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVD---QPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~---~~G~~~~ 349 (350)
+-+.|.+.+. .|++|+++++|++|+.++++|.|+. .++++++
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~ 156 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVR 156 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEE
Confidence 4445666665 6799999999999999888887776 4555443
No 287
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=61.43 E-value=5.8 Score=34.13 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=19.9
Q ss_pred hHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 85 RILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 85 aGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
|||+||+ +.|++|+|+|+.+..+.
T Consensus 10 aGl~aA~~l~~~~~~v~ii~~~~~~~~ 36 (201)
T PF07992_consen 10 AGLSAALELARPGAKVLIIEKSPGTPY 36 (201)
T ss_dssp HHHHHHHHHHHTTSEEEEESSSSHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEeccccccc
Confidence 9999998 57999999988776444
No 288
>PRK06996 hypothetical protein; Provisional
Probab=61.13 E-value=18 Score=35.22 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=30.7
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI 345 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G 345 (350)
.+-+.|.+.+. .|++++++++|+.|+.++++|+|+..+|
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~ 155 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTP 155 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCC
Confidence 35555666665 5689999999999999888999987754
No 289
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=60.73 E-value=7.2 Score=39.57 Aligned_cols=29 Identities=14% Similarity=-0.171 Sum_probs=22.3
Q ss_pred ehhhHhHhhh---c--CCCCEEEEecCCCCCcce
Q psy7666 82 LVIRILCTVL---R--ISTPITLLESSSRLGGWV 110 (350)
Q Consensus 82 ~viaGLaaA~---~--~G~~VtVlEa~drvGGRi 110 (350)
++|.|++.|+ + .|.+|+|+|+.+.+|+..
T Consensus 13 gGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~s 46 (494)
T PRK05257 13 GGIMSATLGTLLKELEPEWSITMFERLDGVALES 46 (494)
T ss_pred cHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhc
Confidence 4568899997 2 378999999988776544
No 290
>PRK06116 glutathione reductase; Validated
Probab=60.70 E-value=19 Score=35.80 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=25.7
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
.|+|| ||++||. ++|++|+|+|+. ++||-+..
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN 44 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence 35665 9999997 579999999984 89997643
No 291
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=60.03 E-value=6.6 Score=41.10 Aligned_cols=31 Identities=13% Similarity=-0.104 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeC
Q psy7666 305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLE 335 (350)
Q Consensus 305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~ 335 (350)
-..+..++++.+. .|++|+.+++|++|..++
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~ 262 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDE 262 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEec
Confidence 3457888888887 899999999999998863
No 292
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=59.83 E-value=21 Score=36.32 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhc--CCCEEEeCcceeEEEEe-CCeEEEE
Q psy7666 305 LQTIVNTLGEHLS--NKVEVKMDTTCTNLEFL-EKGVKAV 341 (350)
Q Consensus 305 ~~~L~~aLa~~L~--~g~~I~l~~~V~~I~~~-~~gv~V~ 341 (350)
...|.++|++.+. .|++|+++++|+.|+.+ +++|.|+
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~ 222 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVT 222 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEE
Confidence 4568888888884 58999999999999987 6678775
No 293
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=59.70 E-value=21 Score=36.28 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhcC-----C--CEEEeCcceeEEEEe-CCeEEEEeCCCce
Q psy7666 305 LQTIVNTLGEHLSN-----K--VEVKMDTTCTNLEFL-EKGVKAVDQPIHQ 347 (350)
Q Consensus 305 ~~~L~~aLa~~L~~-----g--~~I~l~~~V~~I~~~-~~gv~V~~~~G~~ 347 (350)
...+..++++.+.. | ++|+++++|+.|..+ ++.|.|++.+|..
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~i 260 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGEI 260 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCEE
Confidence 35577777666642 4 678999999999987 4468898888753
No 294
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=59.58 E-value=6.8 Score=40.57 Aligned_cols=27 Identities=4% Similarity=-0.166 Sum_probs=20.6
Q ss_pred ehhhHhHhhhc--CCCCEEEEecCCCCCc
Q psy7666 82 LVIRILCTVLR--ISTPITLLESSSRLGG 108 (350)
Q Consensus 82 ~viaGLaaA~~--~G~~VtVlEa~drvGG 108 (350)
+++|||+||++ .+.+|+|+|+....||
T Consensus 13 ~G~AGl~AAl~aa~~~~VilleK~~~~~g 41 (583)
T PRK08205 13 AGGAGMRAAIEAGPRARTAVLTKLYPTRS 41 (583)
T ss_pred ccHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 44599999882 3589999999875555
No 295
>PRK06475 salicylate hydroxylase; Provisional
Probab=59.14 E-value=21 Score=34.80 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEe
Q psy7666 306 QTIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVD 342 (350)
Q Consensus 306 ~~L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~ 342 (350)
..|.+.|.+.+. +|++|+++++|++|..+++++.|+.
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~ 145 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATI 145 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEE
Confidence 346677777764 4689999999999998888887765
No 296
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=58.55 E-value=22 Score=34.16 Aligned_cols=42 Identities=12% Similarity=-0.019 Sum_probs=33.0
Q ss_pred HHHHHHHHhhc-CC-CEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS-NK-VEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~-~g-~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.+.+.|.+.+. .| ++++ ++.|++|...++++.|++.+|.+++
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~ 155 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLR 155 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEE
Confidence 46677777776 44 7888 9999999988888999988886553
No 297
>PLN02507 glutathione reductase
Probab=58.20 E-value=26 Score=35.52 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=26.3
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEec---------CCCCCcceEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLES---------SSRLGGWVRS 112 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa---------~drvGGRi~T 112 (350)
.|+|| +|++||. ++|.+|+|+|+ .+.+||-+-.
T Consensus 27 DvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 27 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 46666 8999987 57999999995 4678998744
No 298
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=58.03 E-value=6.4 Score=41.05 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=19.3
Q ss_pred ehhhHhHhhhc-------CCCCEEEEecCCC
Q psy7666 82 LVIRILCTVLR-------ISTPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~~-------~G~~VtVlEa~dr 105 (350)
+++|||+||++ +|.+|+|+|+...
T Consensus 7 sG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 7 GGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 45599999872 3899999999765
No 299
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=57.98 E-value=8.1 Score=38.20 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=26.1
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI 345 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G 345 (350)
.+.+.+.+.+. .|++|+++++|++|..+++.+.|...++
T Consensus 192 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~ 231 (444)
T PRK09564 192 EITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKG 231 (444)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC
Confidence 35556666666 7899999999999965433344544443
No 300
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=57.92 E-value=21 Score=36.88 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=25.3
Q ss_pred eehh---hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 81 LLVI---RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 81 v~vi---aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
|+|| +||+||. ++|.+|+|+|+.+.+||-..
T Consensus 19 vvvvG~G~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 19 LLVVGSGTGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred EEEECCcHHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 5555 7888887 57999999999999999644
No 301
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=57.88 E-value=25 Score=33.99 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=32.9
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+.+.+.+.+. .|++|+++++|++|..+++++.|+..+|+++.
T Consensus 185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~ 227 (377)
T PRK04965 185 VSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIE 227 (377)
T ss_pred HHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEE
Confidence 4445556666 68999999999999987777888888887654
No 302
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=57.83 E-value=29 Score=34.20 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=29.7
Q ss_pred EecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEe
Q psy7666 300 SVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFL 334 (350)
Q Consensus 300 ~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~ 334 (350)
.+.++...+++.|.+.+. .|++|+++++|++|..+
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~ 152 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPE 152 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEec
Confidence 345666779999988888 88999999999999876
No 303
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=57.58 E-value=24 Score=34.01 Aligned_cols=44 Identities=7% Similarity=-0.005 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..+.+.|.+.+. .++..+++++|++|+.+++++.|+..+|++++
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ 155 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLS 155 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEE
Confidence 346667776665 33344899999999998889999988887654
No 304
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=56.14 E-value=27 Score=33.71 Aligned_cols=43 Identities=5% Similarity=-0.080 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..|-+.|.+.+. ++++++++++|++|..++++|.|+..++ +++
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~ 148 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIK 148 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEe
Confidence 457777777776 3578999999999999888898888766 443
No 305
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=55.92 E-value=26 Score=34.15 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEeCC
Q psy7666 306 QTIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVDQP 344 (350)
Q Consensus 306 ~~L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~~~ 344 (350)
..+.+.|.+.+. +|++|+++++|++|+.+++++.|+..+
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~ 161 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEI 161 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEcc
Confidence 347777777765 478999999999999988888887753
No 306
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=55.70 E-value=7.4 Score=37.78 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=20.4
Q ss_pred ehhhHhHhhhc-----CCCCEEEEecCCCC
Q psy7666 82 LVIRILCTVLR-----ISTPITLLESSSRL 106 (350)
Q Consensus 82 ~viaGLaaA~~-----~G~~VtVlEa~drv 106 (350)
++.|||++|++ .|.+|+|+|+....
T Consensus 7 aGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 7 AGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 44599999873 49999999998876
No 307
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=55.67 E-value=26 Score=35.42 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=22.1
Q ss_pred ehhhHhHhhh---cC--CCCEEEEecCCCCCcc
Q psy7666 82 LVIRILCTVL---RI--STPITLLESSSRLGGW 109 (350)
Q Consensus 82 ~viaGLaaA~---~~--G~~VtVlEa~drvGGR 109 (350)
++|.|+++|+ +. |.+|+|||+.+.+|..
T Consensus 8 gGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~ 40 (483)
T TIGR01320 8 AGIMSATLGVLLRELEPNWSITLIERLDAVAAE 40 (483)
T ss_pred chHHHHHHHHHHHHhCCCCeEEEEEcCCcchhh
Confidence 5669999997 33 9999999998876643
No 308
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=55.57 E-value=31 Score=31.37 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=27.7
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCC
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQP 344 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~ 344 (350)
+.+.|.+.+. .|++++++++|++|..+++++.+...+
T Consensus 93 l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~ 130 (295)
T TIGR02032 93 FDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRG 130 (295)
T ss_pred HHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcC
Confidence 4455555555 679999999999999988887665443
No 309
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=55.53 E-value=29 Score=34.79 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=25.6
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
+|+|| +|++||. ++|.+|+|+|+. ++||.+..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~ 41 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVL 41 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccc
Confidence 45565 8999987 579999999975 69998754
No 310
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=55.21 E-value=30 Score=34.39 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=25.9
Q ss_pred eehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 81 LLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
|+|| ||++||. ++|++|+|+|+ +++||.+..
T Consensus 5 vvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 5 LFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 5555 9999998 57999999998 689998764
No 311
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=54.50 E-value=9.5 Score=39.19 Aligned_cols=25 Identities=4% Similarity=-0.209 Sum_probs=22.1
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
.+|+++|. ++|++|.|+|+....||
T Consensus 10 p~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 10 PIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred hHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 49999986 68999999999999886
No 312
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=54.09 E-value=29 Score=33.60 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..+.+.+.+.+..++.+.+++.|++|+..++++.|++.+|++++
T Consensus 87 ~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~ 130 (374)
T PF05834_consen 87 ADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIR 130 (374)
T ss_pred HHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEE
Confidence 34666666666523578999999999999888999999998765
No 313
>KOG1800|consensus
Probab=53.97 E-value=10 Score=36.92 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=28.3
Q ss_pred ceeehh----hHhHhhh---c--CCCCEEEEecCCCCCcceEE
Q psy7666 79 LLLLVI----RILCTVL---R--ISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~--~G~~VtVlEa~drvGGRi~T 112 (350)
++|.|| ||+-+|. + .+.+|+|+|+...++|.++-
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 457777 8988886 3 46999999999999999876
No 314
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=53.37 E-value=26 Score=35.02 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCceec
Q psy7666 305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQMT 349 (350)
Q Consensus 305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~~ 349 (350)
+-.+++.|.+.|. .|++|++++.|..|+..++. ..|..++|.++.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~ 218 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIE 218 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEe
Confidence 4457778888888 89999999999999998775 567888887664
No 315
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=53.34 E-value=11 Score=38.25 Aligned_cols=30 Identities=10% Similarity=-0.146 Sum_probs=22.2
Q ss_pred ehhhHhHhhh---cC--CCCEEEEecCCCCCcceE
Q psy7666 82 LVIRILCTVL---RI--STPITLLESSSRLGGWVR 111 (350)
Q Consensus 82 ~viaGLaaA~---~~--G~~VtVlEa~drvGGRi~ 111 (350)
++|+|+++|+ +. |.+|+|+|+.+.+|-...
T Consensus 14 gGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 14 AGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 4568888887 33 799999999777765433
No 316
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=53.32 E-value=29 Score=34.52 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=26.0
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
+|+|| |||+||. +.|++|+|+|+.. +||.+..
T Consensus 6 DvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 6 DVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 36666 8999987 5699999999876 9998654
No 317
>KOG2960|consensus
Probab=53.10 E-value=6.4 Score=35.29 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=34.2
Q ss_pred hHhHhhh-----cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceec---CCCCCchHHHHHHHHcCCCC
Q psy7666 85 RILCTVL-----RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIR---PKGRLGANTLKLVEDLGLAD 149 (350)
Q Consensus 85 aGLaaA~-----~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~---~~~~~~~~l~~l~~elGl~~ 149 (350)
|||+||+ +...+|.++|++--+||-.+ +|.+.|. -+. +..=+++|+|++.
T Consensus 87 aGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW-----------LGGQLFSAMvvRK----PAhLFL~EigvpY 144 (328)
T KOG2960|consen 87 AGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW-----------LGGQLFSAMVVRK----PAHLFLQEIGVPY 144 (328)
T ss_pred cccceeeeeeccCCCceEEEEEeeecCCCccc-----------ccchhhhhhhhcC----hHHHHHHHhCCCc
Confidence 9999998 35799999999988777543 2334331 122 3456778888864
No 318
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=52.84 E-value=10 Score=38.29 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=28.7
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI 345 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G 345 (350)
+.+.+.+.|. .|++|++++.|++|...++++.|+..+|
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~ 260 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDS 260 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecC
Confidence 4556666776 7899999999999987766666665554
No 319
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=52.74 E-value=36 Score=33.66 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=27.1
Q ss_pred HHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 311 TLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 311 aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.|++.+. .|++|+.+++|++|..+++++.+...+|.+++
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~ 152 (428)
T PRK10157 113 WLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIE 152 (428)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEE
Confidence 3444444 57999999999999988777654445555553
No 320
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=52.21 E-value=36 Score=33.81 Aligned_cols=39 Identities=10% Similarity=-0.000 Sum_probs=31.9
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEE-EEeCCC
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVK-AVDQPI 345 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~-V~~~~G 345 (350)
.|.++|.+.+. .|++|..+++|++|..+++++. |.+.++
T Consensus 264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g 304 (419)
T TIGR03378 264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNH 304 (419)
T ss_pred HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCC
Confidence 37888888888 8999999999999999888765 554554
No 321
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=51.44 E-value=12 Score=38.67 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=22.5
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWV 110 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi 110 (350)
.|||.||. .+|.+|+|+|+....+|..
T Consensus 16 ~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t 45 (562)
T COG1053 16 GAGLRAAIEAAEAGLKVALLSKAPPKRGHT 45 (562)
T ss_pred HHHHHHHHHHHhcCCcEEEEEccccCCCch
Confidence 39999988 5799999999998887553
No 322
>PLN02697 lycopene epsilon cyclase
Probab=50.73 E-value=16 Score=37.33 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=19.1
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCC
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLG 107 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvG 107 (350)
+|||++|. ++|++|+|+|+....+
T Consensus 118 PAGLalA~~Lak~Gl~V~LIe~~~p~~ 144 (529)
T PLN02697 118 PAGLALAAESAKLGLNVGLIGPDLPFT 144 (529)
T ss_pred HHHHHHHHHHHhCCCcEEEecCcccCC
Confidence 39999986 6799999999864443
No 323
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=50.70 E-value=9 Score=37.61 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=18.3
Q ss_pred hhHhHhhh---cCCCCEEEE-ecCCCCCcce
Q psy7666 84 IRILCTVL---RISTPITLL-ESSSRLGGWV 110 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVl-Ea~drvGGRi 110 (350)
.||..||+ +.|.+|.|+ +..+.+|...
T Consensus 9 ~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~ 39 (392)
T PF01134_consen 9 HAGCEAALAAARMGAKVLLITHNTDTIGEMS 39 (392)
T ss_dssp HHHHHHHHHHHHTT--EEEEES-GGGTT--S
T ss_pred HHHHHHHHHHHHCCCCEEEEeeccccccccc
Confidence 39999988 689999999 7778888653
No 324
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=50.42 E-value=14 Score=36.70 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=21.7
Q ss_pred eeehh----hHhHhhh---c--CCCCEEEEecCCCCC
Q psy7666 80 LLLVI----RILCTVL---R--ISTPITLLESSSRLG 107 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~--~G~~VtVlEa~drvG 107 (350)
+|+|| ||++||. + .+++|+|+|+.+..+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 45555 9999986 2 279999999998755
No 325
>PLN02463 lycopene beta cyclase
Probab=49.94 E-value=37 Score=33.97 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=32.8
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.+-+.|.+.+. .|++++ +++|++|+..++++.|++.+|++++
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~ 157 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQ 157 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEE
Confidence 35566666666 678886 6799999998888999999987664
No 326
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=49.79 E-value=40 Score=35.58 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..|.+.|++.++ ...|+++++|++|+.++++|+|+..+|.+++
T Consensus 194 ~~L~~~L~~alg-~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~ 236 (668)
T PLN02927 194 MTLQQILARAVG-EDVIRNESNVVDFEDSGDKVTVVLENGQRYE 236 (668)
T ss_pred HHHHHHHHhhCC-CCEEEcCCEEEEEEEeCCEEEEEECCCCEEE
Confidence 357778888875 2358899999999999899999999987654
No 327
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=49.54 E-value=39 Score=33.52 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.3
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
.|||+||. +.|.+|+|+|+ +++||.+..
T Consensus 11 ~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 11 PGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred HHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 39999987 57999999999 899998754
No 328
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=49.29 E-value=33 Score=34.99 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=27.8
Q ss_pred HHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEeC--CC
Q psy7666 310 NTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVDQ--PI 345 (350)
Q Consensus 310 ~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~~--~G 345 (350)
+.|.+.+. +|++|+++++|++|++++++|+|+.. +|
T Consensus 117 ~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G 156 (538)
T PRK06183 117 AVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADG 156 (538)
T ss_pred HHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCC
Confidence 34444443 47999999999999999999888765 56
No 329
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=47.65 E-value=45 Score=32.46 Aligned_cols=41 Identities=10% Similarity=0.048 Sum_probs=30.8
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+.+.+.+.+. .|++|++++.|++|.. ++.+.|+..+|+++.
T Consensus 188 ~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~ 229 (396)
T PRK09754 188 VQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQ 229 (396)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEE
Confidence 3445566665 7899999999999976 556778888887654
No 330
>PRK09897 hypothetical protein; Provisional
Probab=47.61 E-value=47 Score=34.08 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhc-CC--CEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666 306 QTIVNTLGEHLS-NK--VEVKMDTTCTNLEFLEKGVKAVDQPI 345 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g--~~I~l~~~V~~I~~~~~gv~V~~~~G 345 (350)
....+.+.+.+. .| ++|+.+++|+.|+..++++.|++.++
T Consensus 107 ~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~g 149 (534)
T PRK09897 107 RDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQD 149 (534)
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCC
Confidence 445556666665 44 68889999999999988999987554
No 331
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=47.28 E-value=45 Score=32.97 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=26.0
Q ss_pred eehh----hHhHhhh---cCCCCEEEEecCC-CCCcceEE
Q psy7666 81 LLVI----RILCTVL---RISTPITLLESSS-RLGGWVRS 112 (350)
Q Consensus 81 v~vi----aGLaaA~---~~G~~VtVlEa~d-rvGGRi~T 112 (350)
|+|| |||+||. ++|++|+|+|+.+ .+||.+..
T Consensus 6 vvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 6 AVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred EEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 5555 9999997 5699999999976 48998754
No 332
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=47.15 E-value=41 Score=32.79 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.4
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
.+|||+||. ++|.+|+|+|+.+..||
T Consensus 8 G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 8 GLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 349999987 68999999999999999
No 333
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=46.21 E-value=40 Score=34.23 Aligned_cols=27 Identities=11% Similarity=-0.123 Sum_probs=21.8
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGGW 109 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGGR 109 (350)
+|.|+++|+ +.|.+|+|+|+.|..+|-
T Consensus 15 Gi~G~~~A~~la~rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 15 GINGAGIARDAAGRGLSVLLCEQDDLASAT 44 (508)
T ss_pred CHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 458899988 579999999998776554
No 334
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=46.10 E-value=38 Score=34.03 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=27.8
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSV 113 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~ 113 (350)
+++|| ||.+||. +.|.+|.|+|+..++||-|-.+
T Consensus 6 DvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 6 DVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 36666 8999987 5688899999998999987664
No 335
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=45.26 E-value=16 Score=33.74 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=25.1
Q ss_pred HHHHhhc-CCCEEEeCcceeEEEEe--CC---eEEEEeCCCc
Q psy7666 311 TLGEHLS-NKVEVKMDTTCTNLEFL--EK---GVKAVDQPIH 346 (350)
Q Consensus 311 aLa~~L~-~g~~I~l~~~V~~I~~~--~~---gv~V~~~~G~ 346 (350)
-|...+. .|.+|++++.|++|..+ +. +|.+...++.
T Consensus 198 ~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~ 239 (296)
T PF00732_consen 198 YLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGG 239 (296)
T ss_dssp HHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTS
T ss_pred ccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCc
Confidence 3444455 58899999999999776 33 3566666665
No 336
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=44.79 E-value=50 Score=32.07 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=19.5
Q ss_pred ehhhHhHhhh---c-CCC-CEEEEecCCCCCc
Q psy7666 82 LVIRILCTVL---R-IST-PITLLESSSRLGG 108 (350)
Q Consensus 82 ~viaGLaaA~---~-~G~-~VtVlEa~drvGG 108 (350)
++|.|+++|+ + .|. +|+|+|+.. +|+
T Consensus 38 gGi~G~s~A~~L~~~~g~~~V~vle~~~-~~~ 68 (407)
T TIGR01373 38 GGGHGLATAYYLAKEHGITNVAVLEKGW-LGG 68 (407)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEEccc-ccC
Confidence 3458999997 4 384 999999974 554
No 337
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=44.11 E-value=49 Score=32.59 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC----eEEEEeCCCc
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK----GVKAVDQPIH 346 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~----gv~V~~~~G~ 346 (350)
..+.+.|.+.+. .|++|+++++|++|..+++ +|.+...++.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~ 175 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKG 175 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCe
Confidence 357888888887 7899999999999998644 3455555554
No 338
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=43.78 E-value=18 Score=35.92 Aligned_cols=31 Identities=19% Similarity=0.047 Sum_probs=24.7
Q ss_pred ehhhHhHhhh---cCC--CCEEEEecCCCCCcceEE
Q psy7666 82 LVIRILCTVL---RIS--TPITLLESSSRLGGWVRS 112 (350)
Q Consensus 82 ~viaGLaaA~---~~G--~~VtVlEa~drvGGRi~T 112 (350)
++|-|++.|+ +.+ .+|+|+|+.+.+|--..+
T Consensus 11 gGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 11 GGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred CcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 5568888887 344 999999999998876655
No 339
>PRK11445 putative oxidoreductase; Provisional
Probab=43.35 E-value=60 Score=31.00 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=24.3
Q ss_pred CCCEEEeCcceeEEEEeCCeEEEEe-CCCc
Q psy7666 318 NKVEVKMDTTCTNLEFLEKGVKAVD-QPIH 346 (350)
Q Consensus 318 ~g~~I~l~~~V~~I~~~~~gv~V~~-~~G~ 346 (350)
.|+++++++.|++|+.+++++.|+. .+|+
T Consensus 111 ~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~ 140 (351)
T PRK11445 111 ASVEVYHNSLCRKIWREDDGYHVIFRADGW 140 (351)
T ss_pred cCCEEEcCCEEEEEEEcCCEEEEEEecCCc
Confidence 5689999999999999888888875 5564
No 340
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=43.18 E-value=46 Score=32.90 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=32.1
Q ss_pred HHHHHHHHhhc-C---CCEEEeCcceeEEEEe-------CCeEEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS-N---KVEVKMDTTCTNLEFL-------EKGVKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~-~---g~~I~l~~~V~~I~~~-------~~gv~V~~~~G~~~~ 349 (350)
.+.+.|.+.+. . +++|+++++|.+|+.+ +++++|+..+|++++
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~ 171 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLY 171 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEE
Confidence 35556666665 2 4799999999999863 457899999988765
No 341
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=42.81 E-value=21 Score=36.29 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=18.6
Q ss_pred hhhHhHhhh---cC-C-CCEEEEecCCCCC
Q psy7666 83 VIRILCTVL---RI-S-TPITLLESSSRLG 107 (350)
Q Consensus 83 viaGLaaA~---~~-G-~~VtVlEa~drvG 107 (350)
+|.|+++|+ +. + .+|+|+|+.+.+|
T Consensus 54 GI~G~a~A~~La~~~~~~~V~VlEk~~~~a 83 (497)
T PTZ00383 54 GVTGTALFYTLSKFTNLKKIALIERRSDFA 83 (497)
T ss_pred cHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence 347888887 32 3 7999999987654
No 342
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=41.93 E-value=55 Score=33.27 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
..+.+.+.+.+. .|++++++++|++|..+++.+.|+..+|+.++
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~ 311 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLK 311 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEE
Confidence 346777777776 68999999999999887777888888876553
No 343
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=41.87 E-value=55 Score=32.49 Aligned_cols=43 Identities=19% Similarity=0.116 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEE-EeCCCc
Q psy7666 303 GGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKA-VDQPIH 346 (350)
Q Consensus 303 GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V-~~~~G~ 346 (350)
.|+ .+.+.|.+.+. .|++|+++++|++++.+++++.+ ...+|+
T Consensus 257 pG~-rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~ 301 (422)
T PRK05329 257 PGL-RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHG 301 (422)
T ss_pred chH-HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCc
Confidence 455 58888888887 88999999999999988777654 334443
No 344
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=41.59 E-value=71 Score=31.78 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=30.8
Q ss_pred ecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE
Q psy7666 301 VEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV 338 (350)
Q Consensus 301 ~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv 338 (350)
+.+|-..++..|.+.+. .|++|+++++|++|..++++|
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v 164 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRF 164 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeE
Confidence 45555678888988887 789999999999999876654
No 345
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=41.01 E-value=60 Score=32.81 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=25.1
Q ss_pred eeehh----hHhHhhh---cC-CCCEEEEecC--------CCCCcceEE
Q psy7666 80 LLLVI----RILCTVL---RI-STPITLLESS--------SRLGGWVRS 112 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~-G~~VtVlEa~--------drvGGRi~T 112 (350)
.|+|| +|.+||. ++ |.+|+|+|+. +++||-|-.
T Consensus 5 DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln 53 (486)
T TIGR01423 5 DLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN 53 (486)
T ss_pred CEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence 36666 8888887 44 8999999974 679997544
No 346
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.97 E-value=20 Score=39.23 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=19.2
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCC
Q psy7666 83 VIRILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~dr 105 (350)
++|||+||+ ++|.+|+|+|+...
T Consensus 22 G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 22 GTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred CHHHHHHHHHHHHCCCeEEEEecccc
Confidence 349999998 46999999999874
No 347
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=40.65 E-value=60 Score=33.53 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=25.0
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
+|||+||. ++|.+|+|+|+.+.+||....
T Consensus 19 ~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 19 AGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence 49999987 579999999999999997653
No 348
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=40.65 E-value=56 Score=33.16 Aligned_cols=34 Identities=15% Similarity=-0.095 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE
Q psy7666 305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV 338 (350)
Q Consensus 305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv 338 (350)
-..++.++++.+. .|++|.++++|++|..+++++
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v 161 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRV 161 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEE
Confidence 3457778887777 899999999999999887763
No 349
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=40.54 E-value=53 Score=31.84 Aligned_cols=40 Identities=5% Similarity=-0.098 Sum_probs=28.9
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEE-eCCeEEEEe-CCCc
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEF-LEKGVKAVD-QPIH 346 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~-~~~gv~V~~-~~G~ 346 (350)
.+.+.|.+... .|++|+++++|++|+. +++++.|++ .+|+
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~ 146 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGE 146 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCe
Confidence 35556665555 6799999999999987 556667766 4664
No 350
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=40.51 E-value=60 Score=32.53 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=25.7
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEec------CCCCCcceEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLES------SSRLGGWVRS 112 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa------~drvGGRi~T 112 (350)
.|+|| |||+||. ++|.+|+|+|+ ...+||.+..
T Consensus 6 DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 6 DVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence 35665 9999987 57999999998 3678887644
No 351
>PRK08244 hypothetical protein; Provisional
Probab=40.41 E-value=57 Score=32.78 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=24.6
Q ss_pred HHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC
Q psy7666 311 TLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ 343 (350)
Q Consensus 311 aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~ 343 (350)
.|.+.+. .|++|+++++|++|+.+++++.|+..
T Consensus 105 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~ 138 (493)
T PRK08244 105 VLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVR 138 (493)
T ss_pred HHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEE
Confidence 3333343 47899999999999998888776553
No 352
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=39.94 E-value=66 Score=32.11 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=26.6
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSV 113 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~ 113 (350)
+|+|| ||++||. +.|.+|+|+|+ +.+||.+...
T Consensus 6 DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~~ 45 (466)
T PRK07818 6 DVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLNV 45 (466)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceecC
Confidence 36666 9999997 57999999997 5889987653
No 353
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=39.93 E-value=22 Score=35.35 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=18.2
Q ss_pred hhhHhHhhh---cCCCCEEEEecCC
Q psy7666 83 VIRILCTVL---RISTPITLLESSS 104 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~d 104 (350)
.++|++||. ++|.+|+|+|+..
T Consensus 11 G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 11 GLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred cHHHHHHHHHHHHCCCcEEEEECCC
Confidence 449999987 5799999999863
No 354
>PRK06996 hypothetical protein; Provisional
Probab=39.55 E-value=24 Score=34.37 Aligned_cols=24 Identities=21% Similarity=0.047 Sum_probs=18.1
Q ss_pred ehhhHhHhhh---cCC----CCEEEEecCCC
Q psy7666 82 LVIRILCTVL---RIS----TPITLLESSSR 105 (350)
Q Consensus 82 ~viaGLaaA~---~~G----~~VtVlEa~dr 105 (350)
++++||++|. ++| .+|+|+|+.+.
T Consensus 19 gGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 19 AGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred cCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 3449999987 445 46999999764
No 355
>PRK07846 mycothione reductase; Reviewed
Probab=39.26 E-value=75 Score=31.64 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=24.5
Q ss_pred eehh----hHhHhhh-cCCCCEEEEecCCCCCcceEEE
Q psy7666 81 LLVI----RILCTVL-RISTPITLLESSSRLGGWVRSV 113 (350)
Q Consensus 81 v~vi----aGLaaA~-~~G~~VtVlEa~drvGGRi~T~ 113 (350)
|+|| +|.+||. ++|.+|.|+|+ +.+||-|-.+
T Consensus 4 ~vVIG~G~~g~~aa~~~~G~~V~lie~-~~~GGtC~n~ 40 (451)
T PRK07846 4 LIIIGTGSGNSILDERFADKRIAIVEK-GTFGGTCLNV 40 (451)
T ss_pred EEEECCCHHHHHHHHHHCCCeEEEEeC-CCCCCcccCc
Confidence 5555 7888776 56999999997 6789976554
No 356
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=38.64 E-value=70 Score=31.84 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=25.3
Q ss_pred eehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 81 LLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
|+|| ||++||. +.|++|+|+|+ +.+||.+..
T Consensus 5 vvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~~ 42 (450)
T TIGR01421 5 YLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCVN 42 (450)
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEecc-cccccceec
Confidence 5555 9999987 57999999998 579997743
No 357
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=38.45 E-value=72 Score=32.41 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=34.5
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
.+.+.+.+.+. .|.+++++++|++|...++.+.|+..+|.+++
T Consensus 267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~ 310 (517)
T PRK15317 267 KLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLK 310 (517)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEE
Confidence 46777777776 67999999999999998778888887776554
No 358
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=38.43 E-value=32 Score=33.89 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=27.1
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM 348 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~ 348 (350)
.+.+.+.+.|. .|++|+++++|++|.. ++ |+..+|+++
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~~--v~~~~g~~i 267 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--KE--VVLKDGEVI 267 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC--CE--EEECCCCEE
Confidence 35666677777 8899999999999863 33 445566654
No 359
>PRK06126 hypothetical protein; Provisional
Probab=38.35 E-value=60 Score=33.08 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=26.1
Q ss_pred HHHHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEe
Q psy7666 308 IVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVD 342 (350)
Q Consensus 308 L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~ 342 (350)
+-+.|.+.+. .|++|+++++|++|..++++|.|+.
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~ 164 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATV 164 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEE
Confidence 4445555543 4789999999999999888877655
No 360
>PTZ00052 thioredoxin reductase; Provisional
Probab=38.32 E-value=72 Score=32.28 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=25.4
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecC-----C---CCCcceEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESS-----S---RLGGWVRS 112 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~-----d---rvGGRi~T 112 (350)
.|+|| ||++||. ++|.+|+|+|+. . ++||.+-.
T Consensus 7 DviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n 54 (499)
T PTZ00052 7 DLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVN 54 (499)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceecc
Confidence 36666 9999997 579999999963 2 58998743
No 361
>PRK14727 putative mercuric reductase; Provisional
Probab=38.04 E-value=73 Score=31.98 Aligned_cols=32 Identities=16% Similarity=0.410 Sum_probs=27.1
Q ss_pred eehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 81 LLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
|+|| +|++||. +.|.+|+|+|+.+++||-+..
T Consensus 19 vvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 19 VAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 5555 8999987 579999999999999998764
No 362
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=37.68 E-value=40 Score=33.28 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=21.5
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEe
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFL 334 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~ 334 (350)
.+.+...+.|. .|++|+++++|++|+.+
T Consensus 210 ~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~ 238 (405)
T COG1252 210 KLSKYAERALEKLGVEVLLGTPVTEVTPD 238 (405)
T ss_pred HHHHHHHHHHHHCCCEEEcCCceEEECCC
Confidence 35555566666 78999999999999754
No 363
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=37.61 E-value=74 Score=28.98 Aligned_cols=41 Identities=7% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666 307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM 348 (350)
Q Consensus 307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~ 348 (350)
.+.+.+.+.+. .|+++++ +.|.+|+..++++.|++.+|+++
T Consensus 58 ~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~ 99 (300)
T TIGR01292 58 ELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEY 99 (300)
T ss_pred HHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEE
Confidence 45566666555 6789999 89999999888888888777654
No 364
>KOG2844|consensus
Probab=37.42 E-value=55 Score=34.44 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=39.8
Q ss_pred eEEEecCc-H--HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCcee
Q psy7666 297 SVWSVEGG-L--QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQM 348 (350)
Q Consensus 297 ~~~~~~GG-~--~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~ 348 (350)
++|.|..| | ..+..+|+.... .|+.|.-++||++|+...++ +.|.+..|.+=
T Consensus 175 ~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~ie 231 (856)
T KOG2844|consen 175 GLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGSIE 231 (856)
T ss_pred eeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCccee
Confidence 35666555 3 458888888887 89999999999999987654 67888887653
No 365
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=37.38 E-value=73 Score=32.95 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=24.4
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
++|++||. ++|.+|+|+|+.+.+||....
T Consensus 22 ~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 22 AAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 38999987 579999999999999997543
No 366
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=37.38 E-value=60 Score=32.54 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=42.8
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecC---------Ccee--cCCCCCchHHHH
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKG---------PRTI--RPKGRLGANTLK 140 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~G---------a~~~--~~~~~~~~~l~~ 140 (350)
++|+|+ +|+++|. +.|++|++.+.+.-.=+-........+..++.| +..+ .|+-+..+++.+
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v~ 87 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLVE 87 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHHH
Confidence 556655 9999987 789999999977665111111100234445555 2222 343333457888
Q ss_pred HHHHcCCCC
Q psy7666 141 LVEDLGLAD 149 (350)
Q Consensus 141 l~~elGl~~ 149 (350)
.++..|++.
T Consensus 88 ~A~~~gi~i 96 (448)
T COG0771 88 AAKAAGIEI 96 (448)
T ss_pred HHHHcCCcE
Confidence 889999854
No 367
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=37.24 E-value=86 Score=31.22 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=24.6
Q ss_pred eehh----hHhHhhh-cCCCCEEEEecCCCCCcceEEE
Q psy7666 81 LLVI----RILCTVL-RISTPITLLESSSRLGGWVRSV 113 (350)
Q Consensus 81 v~vi----aGLaaA~-~~G~~VtVlEa~drvGGRi~T~ 113 (350)
|+|| +|.+||. ++|.+|+|+|+ +.+||-|-.+
T Consensus 5 ~vvIG~G~~g~~aa~~~~g~~V~lie~-~~~GGtC~n~ 41 (452)
T TIGR03452 5 LIIIGTGSGNSIPDPRFADKRIAIVEK-GTFGGTCLNV 41 (452)
T ss_pred EEEECCCHHHHHHHHHHCCCeEEEEeC-CCCCCeeecc
Confidence 5566 7777765 57999999997 6899977553
No 368
>PRK10015 oxidoreductase; Provisional
Probab=37.18 E-value=81 Score=31.20 Aligned_cols=37 Identities=14% Similarity=-0.007 Sum_probs=24.9
Q ss_pred HHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666 312 LGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM 348 (350)
Q Consensus 312 La~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~ 348 (350)
|++.+. .|++|+.+++|+.|..+++++.+...++.++
T Consensus 114 L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i 151 (429)
T PRK10015 114 LMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDIL 151 (429)
T ss_pred HHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEE
Confidence 444444 5799999999999988777765333333333
No 369
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=36.60 E-value=79 Score=32.06 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe---EEEEeCCCc
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG---VKAVDQPIH 346 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g---v~V~~~~G~ 346 (350)
..+++.|.+.+. .|++|+++++|++|..++++ |.+...+|+
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~ 234 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKE 234 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCe
Confidence 347888888877 78999999999999876654 445444443
No 370
>PF08077 Cm_res_leader: Chloramphenicol resistance gene leader peptide; InterPro: IPR012537 This family consists of chloramphenicol (Cm) resistance gene leader peptides. Inducible resistance to Cm in both Gram-positive and Gram-negative bacteria is controlled by translation attenuation. In translation attenuation, the ribosome-binding-site (RBS) for the resistance determinant is sequestered in a secondary structure domain within the mRNA. Preceding the secondary structure is a short, translated ORF termed the leader. Ribosome stalling in the leader causes the destabilisation of the downstream secondary structure, allowing initiation of translation of the Cm resistance gene [].
Probab=36.36 E-value=20 Score=17.91 Aligned_cols=16 Identities=56% Similarity=0.576 Sum_probs=10.2
Q ss_pred CCCcceeEEEEEeeccc
Q psy7666 1 MSNVQSLIYFVVTRRTT 17 (350)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (350)
||.|... .-||||||.
T Consensus 1 msgvpga-lavvtrrti 16 (17)
T PF08077_consen 1 MSGVPGA-LAVVTRRTI 16 (17)
T ss_pred CCCCCce-EEEEEEeec
Confidence 5555543 358899974
No 371
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=36.12 E-value=65 Score=32.57 Aligned_cols=40 Identities=8% Similarity=-0.027 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI 345 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G 345 (350)
..+...+++... .|++|+.+++|++|..+++.+.|+..++
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~ 195 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDA 195 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeC
Confidence 446666766666 7899999999999999877777766554
No 372
>KOG1298|consensus
Probab=35.53 E-value=34 Score=33.60 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=15.4
Q ss_pred ehhhHhH--hhh-cCCCCEEEEecC
Q psy7666 82 LVIRILC--TVL-RISTPITLLESS 103 (350)
Q Consensus 82 ~viaGLa--aA~-~~G~~VtVlEa~ 103 (350)
|+++|-+ +|+ +.|.+|+|+|+.
T Consensus 53 AGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 53 AGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcchHHHHHHHHhhCCcEEEEEecc
Confidence 4445544 444 789999999986
No 373
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=35.29 E-value=53 Score=30.55 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEe
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVD 342 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~ 342 (350)
..+-+.|.+.+. .|++|+++++|..++.+++++.+..
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~ 148 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVV 148 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEE
T ss_pred HHHHHhhhhhhhhhhhhheeeeeccccccccccccccc
Confidence 346666777766 5699999999999999988866544
No 374
>PRK02106 choline dehydrogenase; Validated
Probab=35.16 E-value=26 Score=35.98 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=17.3
Q ss_pred CCCEEEeCcceeEEEEeCCe
Q psy7666 318 NKVEVKMDTTCTNLEFLEKG 337 (350)
Q Consensus 318 ~g~~I~l~~~V~~I~~~~~g 337 (350)
.+.+|.+++.|++|..++++
T Consensus 214 ~nl~i~~~a~V~rI~~~~~~ 233 (560)
T PRK02106 214 PNLTIVTHALTDRILFEGKR 233 (560)
T ss_pred CCcEEEcCCEEEEEEEeCCe
Confidence 46899999999999998654
No 375
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=33.45 E-value=1e+02 Score=31.78 Aligned_cols=26 Identities=15% Similarity=0.232 Sum_probs=22.6
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGW 109 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGR 109 (350)
++||+||. ++|.+|+|+|+.+.+||-
T Consensus 17 ~aG~~aA~~aa~~G~~v~llEk~~~~gG~ 45 (557)
T PRK07843 17 AAGMVAALTAAHRGLSTVVVEKAPHYGGS 45 (557)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence 39999987 579999999999988885
No 376
>PRK14694 putative mercuric reductase; Provisional
Probab=32.27 E-value=97 Score=30.92 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=25.5
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
.|+|| ||++||. ++|.+|+|+|+. .+||-+..
T Consensus 8 dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 8 HIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 35555 9999987 579999999985 79997653
No 377
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=31.93 E-value=81 Score=30.00 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhc-C-CCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666 306 QTIVNTLGEHLS-N-KVEVKMDTTCTNLEFLEKGVKAVDQPIH 346 (350)
Q Consensus 306 ~~L~~aLa~~L~-~-g~~I~l~~~V~~I~~~~~gv~V~~~~G~ 346 (350)
..++.+|++.+. . |++|+.+++|++|+.. .|++.+|.
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~ 183 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGD 183 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCc
Confidence 457778887765 4 8999999999999642 45555554
No 378
>KOG4405|consensus
Probab=31.57 E-value=5.4e+02 Score=25.76 Aligned_cols=40 Identities=3% Similarity=-0.156 Sum_probs=31.4
Q ss_pred EEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666 298 VWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG 337 (350)
Q Consensus 298 ~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g 337 (350)
+.+|--|-+.|+++..+... -|+=-.|+.+|+.|..+.+.
T Consensus 278 fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s 318 (547)
T KOG4405|consen 278 FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLDKES 318 (547)
T ss_pred ceeeccCCCcchHHHHHHHHHhcceEEeccchhheeecccc
Confidence 55677788889998877665 56777899999999887653
No 379
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=31.54 E-value=99 Score=29.68 Aligned_cols=43 Identities=7% Similarity=-0.119 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEe-CCeEEEEeCCCceec
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFL-EKGVKAVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~-~~gv~V~~~~G~~~~ 349 (350)
..+.+.|.+.+. .|++++ +.+|..|..+ ++.+.|++.+|.+++
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~ 129 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQ 129 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEE
Confidence 346666766666 667775 6789999887 556888888886554
No 380
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=31.11 E-value=85 Score=31.50 Aligned_cols=41 Identities=7% Similarity=0.144 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666 305 LQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPI 345 (350)
Q Consensus 305 ~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G 345 (350)
+...++..++.......|+++++|++|+..+++|.|++.++
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~ 153 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNS 153 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcC
Confidence 33344455555431134999999999999888899987643
No 381
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=31.05 E-value=1.1e+02 Score=30.90 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=22.9
Q ss_pred eehh----hHhHhhh---cCCCCEEEEecC-----C---CCCcce
Q psy7666 81 LLVI----RILCTVL---RISTPITLLESS-----S---RLGGWV 110 (350)
Q Consensus 81 v~vi----aGLaaA~---~~G~~VtVlEa~-----d---rvGGRi 110 (350)
|+|| +|+.||. +.|.+|+|+|+. + .+||-+
T Consensus 5 vvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc 49 (484)
T TIGR01438 5 LIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTC 49 (484)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccc
Confidence 5555 8899987 579999999973 2 588864
No 382
>PLN02697 lycopene epsilon cyclase
Probab=30.63 E-value=1e+02 Score=31.57 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEE-EEeCCCceec
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVK-AVDQPIHQMT 349 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~-V~~~~G~~~~ 349 (350)
..+.+.|.+.+. .|+++ ++++|++|..+++++. |+..+|.+++
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~ 236 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIP 236 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEE
Confidence 346677777776 68888 7899999998777765 4556776654
No 383
>PRK13748 putative mercuric reductase; Provisional
Probab=29.99 E-value=1.1e+02 Score=31.33 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=26.7
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
..|+|| ||++||. ++|.+|+|+|+. ++||-+..
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 346666 8999987 579999999986 99997643
No 384
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=29.94 E-value=50 Score=22.83 Aligned_cols=32 Identities=0% Similarity=-0.058 Sum_probs=25.1
Q ss_pred CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 318 NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 318 ~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+|....+...|++.....+...|.+.||.+++
T Consensus 17 P~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~ 48 (55)
T PF09465_consen 17 PGSSLYYEGKVLSYDSKSDRYTVLYEDGTELE 48 (55)
T ss_dssp TTTS-EEEEEEEEEETTTTEEEEEETTS-EEE
T ss_pred CCCCcEEEEEEEEecccCceEEEEEcCCCEEE
Confidence 56677788888888888888999999998864
No 385
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=29.89 E-value=1.2e+02 Score=29.87 Aligned_cols=40 Identities=8% Similarity=0.064 Sum_probs=27.8
Q ss_pred HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666 308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM 348 (350)
Q Consensus 308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~ 348 (350)
+.+.+.+.+. .|++++++++|++|..+++++.++. +|+++
T Consensus 200 ~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i 240 (438)
T PRK07251 200 VAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETY 240 (438)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEE
Confidence 3444555555 6899999999999988766676654 34443
No 386
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.29 E-value=54 Score=32.86 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=38.2
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcce--EEEecCCCeEEecC--------Ccee--cCCCCCchHHH
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWV--RSVQSPEGLIFEKG--------PRTI--RPKGRLGANTL 139 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi--~T~~~~~G~~~D~G--------a~~~--~~~~~~~~~l~ 139 (350)
++|+|| +|+++|. ++|++|+++|+++...... .... ..|..+..| +..+ .+.-+..+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~-~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILE-ALGATVRLGPGPTLPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHH-HcCCEEEECCCccccCCCCEEEECCCcCCCCHHH
Confidence 345544 8888876 6799999999876433221 1111 234444333 2222 12211134667
Q ss_pred HHHHHcCCCC
Q psy7666 140 KLVEDLGLAD 149 (350)
Q Consensus 140 ~l~~elGl~~ 149 (350)
..+++.|++.
T Consensus 96 ~~a~~~gi~v 105 (480)
T PRK01438 96 AAAADAGIPV 105 (480)
T ss_pred HHHHHCCCee
Confidence 7778888754
No 387
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=28.63 E-value=43 Score=32.58 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=21.9
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGW 109 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGR 109 (350)
++|+|| .|+-.|. +.|.+|+|+|+.+++.++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~ 182 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR 182 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh
Confidence 457776 3443333 579999999999987665
No 388
>PRK07538 hypothetical protein; Provisional
Probab=28.59 E-value=1.1e+02 Score=29.79 Aligned_cols=25 Identities=8% Similarity=-0.109 Sum_probs=20.0
Q ss_pred CEEEeCcceeEEEEeCCeEEEEeCC
Q psy7666 320 VEVKMDTTCTNLEFLEKGVKAVDQP 344 (350)
Q Consensus 320 ~~I~l~~~V~~I~~~~~gv~V~~~~ 344 (350)
++|+++++|++|+.+++++.+...+
T Consensus 119 ~~i~~~~~v~~~~~~~~~~~~~~~~ 143 (413)
T PRK07538 119 DAVRTGHRVVGFEQDADVTVVFLGD 143 (413)
T ss_pred cEEEcCCEEEEEEecCCceEEEEec
Confidence 4799999999999887776665544
No 389
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=28.47 E-value=1.2e+02 Score=32.83 Aligned_cols=40 Identities=8% Similarity=0.019 Sum_probs=29.2
Q ss_pred HHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666 310 NTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT 349 (350)
Q Consensus 310 ~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~ 349 (350)
+.+.+.+. .|++|++++.|++|..++....|+..+|+++.
T Consensus 186 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~ 226 (785)
T TIGR02374 186 RLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLE 226 (785)
T ss_pred HHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEE
Confidence 33445555 68999999999999765555667778887654
No 390
>PRK06185 hypothetical protein; Provisional
Probab=27.98 E-value=1.4e+02 Score=28.75 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=28.1
Q ss_pred HHHHHHHHhhc--CCCEEEeCcceeEEEEeCCeE---EEEeCCCc
Q psy7666 307 TIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGV---KAVDQPIH 346 (350)
Q Consensus 307 ~L~~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv---~V~~~~G~ 346 (350)
.+.+.|.+.+. +|++|+.+++|++|..+++++ .+...+|+
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~ 153 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGP 153 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCc
Confidence 35556666554 478999999999999887764 44444553
No 391
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=27.93 E-value=48 Score=34.61 Aligned_cols=26 Identities=19% Similarity=0.008 Sum_probs=19.3
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGG 108 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGG 108 (350)
+.||+.||. +.|.+|+|+|.....+|
T Consensus 9 G~AGl~aA~ala~~G~~v~Lie~~~~~~g 37 (617)
T TIGR00136 9 GHAGCEAALAAARMGAKTLLLTLNLDTIG 37 (617)
T ss_pred cHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence 348888887 56999999998744333
No 392
>PRK06370 mercuric reductase; Validated
Probab=27.66 E-value=1.5e+02 Score=29.56 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=25.4
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
.|+|| ||++||. ++|++|+|+|+. .+||.+-.
T Consensus 7 DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 45 (463)
T PRK06370 7 DAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN 45 (463)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence 46666 9999987 569999999985 78887654
No 393
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.32 E-value=54 Score=31.28 Aligned_cols=26 Identities=4% Similarity=-0.032 Sum_probs=19.4
Q ss_pred Cceeehh------hHhHhhh-cCCCCEEEEecC
Q psy7666 78 LLLLLVI------RILCTVL-RISTPITLLESS 103 (350)
Q Consensus 78 ~~~v~vi------aGLaaA~-~~G~~VtVlEa~ 103 (350)
.++|+|| +|+++.. .+|++|++++.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4667777 5666544 689999999875
No 394
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=27.21 E-value=48 Score=33.97 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=23.4
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWV 110 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi 110 (350)
..|+|| .|+-.|+ .+|++|+|+|+.|-..|-.
T Consensus 13 ~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 13 FDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred CCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence 345554 6666666 4699999999999877753
No 395
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.07 E-value=44 Score=33.23 Aligned_cols=22 Identities=0% Similarity=-0.070 Sum_probs=19.1
Q ss_pred hHhHhhh---cCCCCEEEEecCCCC
Q psy7666 85 RILCTVL---RISTPITLLESSSRL 106 (350)
Q Consensus 85 aGLaaA~---~~G~~VtVlEa~drv 106 (350)
+|+++|. ++|++|+++|+++..
T Consensus 11 sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 11 SGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCch
Confidence 9999986 789999999987654
No 396
>KOG0405|consensus
Probab=26.95 E-value=72 Score=31.01 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=31.0
Q ss_pred cCcHHHHH-HHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCC
Q psy7666 302 EGGLQTIV-NTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPI 345 (350)
Q Consensus 302 ~GG~~~L~-~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G 345 (350)
-.|.+..+ +.+.+.+. .|.++|.++.+++|...+++ ..+....|
T Consensus 225 LR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~ 271 (478)
T KOG0405|consen 225 LRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHG 271 (478)
T ss_pred hcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecc
Confidence 34666644 46677887 88999999999999988776 44444443
No 397
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=26.87 E-value=1.3e+02 Score=29.91 Aligned_cols=27 Identities=15% Similarity=0.425 Sum_probs=22.6
Q ss_pred hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 85 RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 85 aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
||++||. ++|.+|+|+|+.. +||.+-.
T Consensus 11 aG~~aA~~aa~~g~~v~lie~~~-~GG~c~n 40 (463)
T TIGR02053 11 AAFAAAIKAAELGASVAMVERGP-LGGTCVN 40 (463)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence 9999987 5799999999865 8888643
No 398
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=26.62 E-value=1.1e+02 Score=30.15 Aligned_cols=27 Identities=15% Similarity=0.066 Sum_probs=20.8
Q ss_pred ceeehh----hHhHhhhc---CCCCEEEEecCCC
Q psy7666 79 LLLLVI----RILCTVLR---ISTPITLLESSSR 105 (350)
Q Consensus 79 ~~v~vi----aGLaaA~~---~G~~VtVlEa~dr 105 (350)
++|+|| |||.+|.+ .+++|||+|.++.
T Consensus 11 ~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 11 PNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 556666 89998873 3689999998775
No 399
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.20 E-value=51 Score=30.75 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=19.8
Q ss_pred ceeehh------hHhHhhh-cCCCCEEEEecCCC
Q psy7666 79 LLLLVI------RILCTVL-RISTPITLLESSSR 105 (350)
Q Consensus 79 ~~v~vi------aGLaaA~-~~G~~VtVlEa~dr 105 (350)
++|+|| +|++... .+|++|++++.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 467777 6666654 67999999987654
No 400
>PRK07121 hypothetical protein; Validated
Probab=25.90 E-value=1.3e+02 Score=30.30 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC
Q psy7666 304 GLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK 336 (350)
Q Consensus 304 G~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~ 336 (350)
+...+.+.|.+.+. .|++|.++++|++|..+++
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~ 208 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDD 208 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC
Confidence 34568888988887 7899999999999988643
No 401
>KOG1335|consensus
Probab=25.60 E-value=50 Score=32.45 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=31.3
Q ss_pred ecCcHHH-HHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEe
Q psy7666 301 VEGGLQT-IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVD 342 (350)
Q Consensus 301 ~~GG~~~-L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~ 342 (350)
+-++|+. +..+.-+.|. +|-.++|+++|+.+..+++| |.|+.
T Consensus 246 i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~v 290 (506)
T KOG1335|consen 246 IGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEV 290 (506)
T ss_pred hccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEE
Confidence 4566776 5556666666 88999999999999999884 55443
No 402
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=25.42 E-value=1.6e+02 Score=29.40 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=27.6
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
.|+|| ||++||. ++|++|+|+|+++++||.+..
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 36666 9999997 579999999998899998733
No 403
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=25.13 E-value=1.2e+02 Score=31.27 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.3
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWV 110 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi 110 (350)
++||+||+ ++|.+|+|+|+.+.+||..
T Consensus 16 ~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 16 GGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred HHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 49999987 5699999999999899953
No 404
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=24.51 E-value=1.6e+02 Score=30.45 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=24.3
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWVRS 112 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T 112 (350)
.+||+||. ++|.+|+|+|+.+.+||....
T Consensus 26 ~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 26 AAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred HHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 38998887 569999999999999996543
No 405
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=24.19 E-value=1.4e+02 Score=28.96 Aligned_cols=42 Identities=10% Similarity=-0.078 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhc-CCCEEEeCcceeEEEE-eCCeEEEEeC-CCc
Q psy7666 305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEF-LEKGVKAVDQ-PIH 346 (350)
Q Consensus 305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~-~~~gv~V~~~-~G~ 346 (350)
...+.+.|.+.+. .|+.+++++.+..+.. +++++.|+.. +|+
T Consensus 102 ~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~ 146 (390)
T TIGR02360 102 QTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGE 146 (390)
T ss_pred HHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCe
Confidence 3456677777766 6789999999888865 4556667664 665
No 406
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=24.13 E-value=1.5e+02 Score=30.65 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=23.3
Q ss_pred hhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666 83 VIRILCTVL---RISTPITLLESSSRLGGW 109 (350)
Q Consensus 83 viaGLaaA~---~~G~~VtVlEa~drvGGR 109 (350)
.+|||+||+ ++|.+|+|+|+.+.+||.
T Consensus 20 G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 20 GGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred cHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 349999987 579999999999998984
No 407
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=23.86 E-value=1.3e+02 Score=30.78 Aligned_cols=41 Identities=10% Similarity=0.166 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCCCEEEeCcceeEEEEeCC-----eEEEEeCCC
Q psy7666 305 LQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEK-----GVKAVDQPI 345 (350)
Q Consensus 305 ~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~-----gv~V~~~~G 345 (350)
+....+.-+++......|++|+.|.+|++.++ +|.|++.++
T Consensus 86 v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~ 131 (531)
T PF00743_consen 86 VLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND 131 (531)
T ss_dssp HHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT
T ss_pred HHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC
Confidence 66677777887651258999999999998753 599988654
No 408
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=23.72 E-value=1.2e+02 Score=31.01 Aligned_cols=33 Identities=9% Similarity=-0.102 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE
Q psy7666 306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV 338 (350)
Q Consensus 306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv 338 (350)
..++.++++... .|++|+++++|+.|..++++|
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v 182 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTV 182 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeE
Confidence 346777777766 799999999999999887653
No 409
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=23.29 E-value=56 Score=33.30 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.3
Q ss_pred CCCEEEeCcceeEEEEeCCe
Q psy7666 318 NKVEVKMDTTCTNLEFLEKG 337 (350)
Q Consensus 318 ~g~~I~l~~~V~~I~~~~~g 337 (350)
.|.+|.+++.|++|..++++
T Consensus 207 ~nl~i~~~~~V~rI~~~~~r 226 (532)
T TIGR01810 207 PNLEVQTRAFVTKINFEGNR 226 (532)
T ss_pred CCeEEEeCCEEEEEEecCCe
Confidence 57899999999999987654
No 410
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=23.18 E-value=1.9e+02 Score=28.73 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=24.7
Q ss_pred eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
+|+|| ||++||. ++|.+|+|+|+. .+||-+-
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~ 39 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL 39 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC
Confidence 46666 8999987 579999999975 6888764
No 411
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=23.16 E-value=45 Score=33.37 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=0.0
Q ss_pred eeehh----hHhHhhh---cCC---CCEEEEecCC
Q psy7666 80 LLLVI----RILCTVL---RIS---TPITLLESSS 104 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~G---~~VtVlEa~d 104 (350)
+|+|| ||..+|. +.+ .+|+|+|+.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
No 412
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=22.64 E-value=68 Score=30.63 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=26.8
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecC--------CCCCcceEEEe
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESS--------SRLGGWVRSVQ 114 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~--------drvGGRi~T~~ 114 (350)
-+|+|| .|.-||. -.|.+||++|.+ +-.|||+++..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence 346666 4555554 468999999998 55799999887
No 413
>PRK12839 hypothetical protein; Provisional
Probab=22.50 E-value=1.7e+02 Score=30.33 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.2
Q ss_pred hhHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666 84 IRILCTVL---RISTPITLLESSSRLGGWVR 111 (350)
Q Consensus 84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~ 111 (350)
++||+||+ ++|.+|+|+|+.+.+||...
T Consensus 18 ~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 18 AGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred HHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 38999987 57999999999999999764
No 414
>KOG2853|consensus
Probab=22.18 E-value=86 Score=30.43 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=22.0
Q ss_pred hHhHhhh-------cCCCCEEEEecCCC---------CCcceEEEe
Q psy7666 85 RILCTVL-------RISTPITLLESSSR---------LGGWVRSVQ 114 (350)
Q Consensus 85 aGLaaA~-------~~G~~VtVlEa~dr---------vGGRi~T~~ 114 (350)
.|.+.|+ +.|.+|+|+|+.+. +||-++.+.
T Consensus 97 ~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFS 142 (509)
T KOG2853|consen 97 SGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS 142 (509)
T ss_pred cchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecc
Confidence 7788886 35899999999874 455555554
No 415
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=21.64 E-value=1.8e+02 Score=28.64 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=21.5
Q ss_pred eeehh----hHhHhhh---cC--CCCEEEEecCCCCC
Q psy7666 80 LLLVI----RILCTVL---RI--STPITLLESSSRLG 107 (350)
Q Consensus 80 ~v~vi----aGLaaA~---~~--G~~VtVlEa~drvG 107 (350)
+|+|| |||+||. +. +.+|+|+|+++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 45555 9999986 33 46999999999875
No 416
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=21.60 E-value=1.7e+02 Score=29.84 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=24.5
Q ss_pred HHHHHhhc--CCCEEEeCcceeEEEEeCCeEEEEe
Q psy7666 310 NTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKAVD 342 (350)
Q Consensus 310 ~aLa~~L~--~g~~I~l~~~V~~I~~~~~gv~V~~ 342 (350)
+.|.+.+. .+++|+++++|++|+.++++|.++.
T Consensus 129 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~ 163 (547)
T PRK08132 129 GYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTV 163 (547)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEE
Confidence 34444443 3689999999999999888876654
No 417
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=21.18 E-value=72 Score=31.70 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=18.5
Q ss_pred ehhhHhHhhh---cCCCCEEEEecCC
Q psy7666 82 LVIRILCTVL---RISTPITLLESSS 104 (350)
Q Consensus 82 ~viaGLaaA~---~~G~~VtVlEa~d 104 (350)
+.++|+++|. +.|.+|+|+|+..
T Consensus 8 gG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 8 GGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred chHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3458888887 5799999999875
No 418
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=21.11 E-value=65 Score=30.72 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=0.0
Q ss_pred eeehh----hHhHhhhcC------CCCEEEEecCCCC
Q psy7666 80 LLLVI----RILCTVLRI------STPITLLESSSRL 106 (350)
Q Consensus 80 ~v~vi----aGLaaA~~~------G~~VtVlEa~drv 106 (350)
+|+|| ||+.+|.+. +++|+|+|+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
No 419
>KOG2665|consensus
Probab=20.91 E-value=77 Score=30.44 Aligned_cols=64 Identities=16% Similarity=0.006 Sum_probs=0.0
Q ss_pred ccccccccccccccccc-----cccccccccccCCCCCCCcee-ehhhHhHhhh-----cCCCCEEEEecCCCCC
Q psy7666 44 CLYLQPLPEARYLSFKF-----QDCHCETSIQKRPFPPDLLLL-LVIRILCTVL-----RISTPITLLESSSRLG 107 (350)
Q Consensus 44 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v-~viaGLaaA~-----~~G~~VtVlEa~drvG 107 (350)
||-.|-+-..|-+=.++ -+..|.-+.+..-.+.+...| +.|-|||.|. +.+.+|.|+|+...++
T Consensus 12 ~Gr~~~~l~~g~~~p~~~~~t~~R~i~gg~~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 12 LGRKRMLLSTGNLGPTWNLITIKRGISGGAESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred hhhhhhhhccCCCCCCccccceeccccCCccccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
No 420
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=20.45 E-value=2.1e+02 Score=31.27 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=28.9
Q ss_pred HHHHHhhc-CCCEEEeCcceeEEEEeCC--eEEEEeCCCceec
Q psy7666 310 NTLGEHLS-NKVEVKMDTTCTNLEFLEK--GVKAVDQPIHQMT 349 (350)
Q Consensus 310 ~aLa~~L~-~g~~I~l~~~V~~I~~~~~--gv~V~~~~G~~~~ 349 (350)
+.+.+.|. .|++|++++.|++|..++. ...|++.+|+++.
T Consensus 191 ~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~ 233 (847)
T PRK14989 191 EQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELE 233 (847)
T ss_pred HHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEE
Confidence 34555555 6899999999999986532 3567778887654
No 421
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=20.07 E-value=67 Score=27.89 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=18.3
Q ss_pred ceeehh----hHhHhhh---cCCCCEEEEecCCC
Q psy7666 79 LLLLVI----RILCTVL---RISTPITLLESSSR 105 (350)
Q Consensus 79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~dr 105 (350)
++|+|| -||..|. ++|++|+.++-...
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 356666 6776665 68999999998765
Done!