RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7666
(350 letters)
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 214 bits (546), Expect = 7e-66
Identities = 98/260 (37%), Positives = 141/260 (54%), Gaps = 6/260 (2%)
Query: 91 LRISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ 150
+ L+ESS RLGGW+RSV+ P G IFE GPR IRP G LGA TL LV +LGL +
Sbjct: 24 APCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSE 83
Query: 151 VIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSD 210
V+P+ HP AQNR +YV LH LP+ L + PFSKPL ++ L +LT + D
Sbjct: 84 VLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPD 143
Query: 211 ESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIK 270
E+++ F RR G EVA A+ S+ G+ AG+++++S+ LF+ EQ H ++ G +
Sbjct: 144 ETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLL 203
Query: 271 EMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK-VEVKMDTTCT 329
+S L R++ E+WS WS+ GGL+ + L HL+++ V V
Sbjct: 204 GAGRTPQ-----PDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVC 258
Query: 330 NLEFLEKGVKAVDQPIHQMT 349
L +G V +
Sbjct: 259 GLSLQAEGRWKVSLRDSSLE 278
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 184 bits (469), Expect = 2e-54
Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 17/247 (6%)
Query: 96 PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
LLESS+RLGG V + G + E+GP + + T L L L ++
Sbjct: 41 DAVLLESSARLGGAVGTHAL-AGYLVEQGPNSFLDREP---ATRALAAALNLEGRIRA-- 94
Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTT-KTVPKSDESIY 214
+ P A+ R +Y +L +P++ + + + +L + + DES+
Sbjct: 95 -ADPAAKRRYVYTRGRLRSVPASPPAFLAS-DILPLGARLRVAGELFSRRAPEGVDESLA 152
Query: 215 DFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMS 274
F R G + ++ GI AGD +++SV L ++E+ H +I GAI+ +
Sbjct: 153 AFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKA 212
Query: 275 KRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFL 334
+R + + ++ + +GGLQ +++ L L + L
Sbjct: 213 QRQA------ALPAGTAPKLSGALSTFDGGLQVLIDALAASL--GDAAHVGARVEGLARE 264
Query: 335 EKGVKAV 341
+ G + +
Sbjct: 265 DGGWRLI 271
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 177 bits (449), Expect = 1e-51
Identities = 61/261 (23%), Positives = 113/261 (43%), Gaps = 28/261 (10%)
Query: 97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
+TL+E+S R+GG +++V+ +G I E+GP + + + + +LV+DLGL ++
Sbjct: 37 LTLVEASPRVGGKIQTVKK-DGYIIERGPDSFLERKK---SAPQLVKDLGLEHLLV---- 88
Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTH-SPFSKPLIFSI-------LHDLTTKTVPK 208
+ + VN+ LH +P T +PF +FS+ + + + K
Sbjct: 89 -NNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTK 147
Query: 209 SDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGA 268
D+S+ +F RR G EV + + ++ GI AGD K+S+ + ++ EQ H +I G
Sbjct: 148 DDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGM 207
Query: 269 IKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTC 328
K + + ++ ++ GLQT+V + + L +V T
Sbjct: 208 KKTRPQGSGQ----------QLTAKKQGQFQTLSTGLQTLVEEIEKQLKL-TKVYKGTKV 256
Query: 329 TNLEFLEKGVKAVDQPIHQMT 349
T L +
Sbjct: 257 TKLSHSGSCYSLELDNGVTLD 277
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 173 bits (439), Expect = 6e-50
Identities = 65/253 (25%), Positives = 116/253 (45%), Gaps = 16/253 (6%)
Query: 96 PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
+T+ E+ + GG +RSV +GLI+++G T+ + L++ LGL ++
Sbjct: 38 NVTVFEAEGKAGGKLRSVSQ-DGLIWDEGANTMTESE---GDVTFLIDSLGLREKQQFPL 93
Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKT-----VPKSD 210
S + R I N LPSN L K++ + + +L + K V S
Sbjct: 94 SQN----KRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSH 149
Query: 211 ESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIK 270
ES+ F R FG EV DY + + G C GD +S++ +L+ LE+ G VI GAI+
Sbjct: 150 ESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIR 209
Query: 271 EMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTN 330
+S + + ++ + +S GG+QT+ + + + L + E+++++
Sbjct: 210 SKLSPKN--EKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLR-EDELRLNSRVLE 266
Query: 331 LEFLEKGVKAVDQ 343
L A+D
Sbjct: 267 LSCSCTEDSAIDS 279
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 164 bits (415), Expect = 1e-46
Identities = 48/249 (19%), Positives = 99/249 (39%), Gaps = 28/249 (11%)
Query: 96 PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
ITLLE+ RLGG V + + +G E+GP + + L+E +GL ++++
Sbjct: 31 NITLLEAGERLGGKVATYR-EDGFTIERGPDSYVARKH---ILTDLIEAIGLGEKLV--- 83
Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTH-SPFSKPLIFS----------ILHDLTTK 204
I LH +P T F + + + +LH +
Sbjct: 84 --RNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEEKQEVADLLLHPSDSL 141
Query: 205 TVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGV 264
+P+ D + +++ R G + + + ++ GI AG+ ++S + EQ G +
Sbjct: 142 RIPEQDIPLGEYLRPRLGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSL 201
Query: 265 IKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKM 324
+G + + + + S+E GL++++ L E L + E+++
Sbjct: 202 FEGMRLMRPLDQL-------PQTPQTTIKATGQFLSLETGLESLIERLEEVLE-RSEIRL 253
Query: 325 DTTCTNLEF 333
+T +
Sbjct: 254 ETPLLAISR 262
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 91.5 bits (226), Expect = 1e-20
Identities = 27/254 (10%), Positives = 72/254 (28%), Gaps = 30/254 (11%)
Query: 96 PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
L E + GG RS G ++ G I + +++ V+
Sbjct: 35 NWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQY---FDDVMDWAVQGWNVLQ-- 89
Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYD 215
+ ++V + P + L +T + + +
Sbjct: 90 ------RESWVWVRGRWVPYPFQN--NIHRLPEQDRKRCLDELVRSHARTYTEPPNNFEE 141
Query: 216 FVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSK 275
+R+FG +AD + + A +S ++ ++ ++ + + + +
Sbjct: 142 SFTRQFGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDL--ERIRRNIQEN---R 196
Query: 276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLE 335
G + + GG I + E L ++ ++ ++ +
Sbjct: 197 DDLGWGPNATFRF-----------PQRGGTGIIYQAIKEKLPSE-KLTFNSGFQAIAIDA 244
Query: 336 KGVKAVDQPIHQMT 349
++
Sbjct: 245 DAKTITFSNGEVVS 258
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 70.7 bits (172), Expect = 1e-13
Identities = 31/249 (12%), Positives = 68/249 (27%), Gaps = 29/249 (11%)
Query: 97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
+++S+ GG + +PEG +++ G I + +++ +
Sbjct: 37 WMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYK---YFDDCLDEALPKEDDW---- 89
Query: 157 SHPTAQNRLIYVNKKLHKLPS--NFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIY 214
+ + + + P N L K + L + ++
Sbjct: 90 -YTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKCIDGMIDAA--LEARVANTKPKTFD 146
Query: 215 DFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMS 274
+++ R G+ +AD + + A K+ +L ++ V I +
Sbjct: 147 EWIVRMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNL--KAVTTNVILGKTA 204
Query: 275 KRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEF 333
+ GG I + L K T +
Sbjct: 205 G--------------NWGPNATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNA 250
Query: 334 LEKGVKAVD 342
K V D
Sbjct: 251 NNKTVTLQD 259
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 51.4 bits (123), Expect = 2e-07
Identities = 26/244 (10%), Positives = 60/244 (24%), Gaps = 40/244 (16%)
Query: 96 PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
T+LE + +GG S G +E G P ++++ G +
Sbjct: 32 DYTILERTDHVGGKCHSPNY-HGRRYEMGAIMGVPSYD---TIQEIMDRTGDKVDGPKLR 87
Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSD-ESIY 214
+ K + P + + + V +
Sbjct: 88 REFLHEDGEIYVPEKDPVRGP-QVMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFD 146
Query: 215 DFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMS 274
+F++ D + G + +++ K + + +
Sbjct: 147 EFLALNGCEAARDL-WINPFTAFGYGHFDNVPAAYVL-KYLDFVTM----------MSFA 194
Query: 275 KRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFL 334
K +W+ G Q + L L + + + T +
Sbjct: 195 KGD--------------------LWTWADGTQAMFEHLNATL--EHPAERNVDITRITRE 232
Query: 335 EKGV 338
+ V
Sbjct: 233 DGKV 236
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 50.8 bits (122), Expect = 3e-07
Identities = 36/246 (14%), Positives = 74/246 (30%), Gaps = 47/246 (19%)
Query: 98 TLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS 157
+LE S+ +GG ++ +G G + P G L+ LG +++
Sbjct: 27 IVLEKSAMIGGRFTNLPY-KGFQLSTGALHMIPHG-EDGPLAHLLRILGAKVEIVNS--- 81
Query: 158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFV 217
+P + I K+ + S K +L ++ +PK + +++
Sbjct: 82 NPKGK---ILWEGKIFHYR-ESWKFL---SVKEKAKALKLLAEIRMNKLPKEEIPADEWI 134
Query: 218 SRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRP 277
+ G +V G A +S
Sbjct: 135 KEKIGENEFLLSVLESFAGW------------------------------ADSVSLSDLT 164
Query: 278 DLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEK 336
L + R+ + + GG + +++ L + NK ++ + EK
Sbjct: 165 ALELAK----EIRAALRWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEK 220
Query: 337 GVKAVD 342
V D
Sbjct: 221 KVYTRD 226
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 9e-05
Identities = 54/375 (14%), Positives = 98/375 (26%), Gaps = 125/375 (33%)
Query: 31 EFTLKIPTLSESTCLYLQP--LPE--ARYLSFKFQDCHCETSIQKRPFPP--DLLLLLVI 84
+F +P +E +P E ++L + + ++ +L L +
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGY------VSSLVEPSKVGQFDQVLNLCLT 89
Query: 85 RILCTVLRISTPI-TLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRP--KGRLGANTLKL 141
L I L + K I+ R+ A
Sbjct: 90 EFENCYLE-GNDIHAL----------AAKLLQENDTTLVKTKELIKNYITARIMAKR--- 135
Query: 142 VEDLGLADQVIPITSSHPTAQNRLIY-VNKKLHKL---------PSNFF----SLFKTHS 187
P +A L V + +L ++F L++T+
Sbjct: 136 -----------PFDKKSNSA---LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 188 PFSKPLIFSI---LHDLTTKTVPKSDESIY-------------------DFVSRRFGS-- 223
LI L +L E ++ D++ S
Sbjct: 182 VLVGDLIKFSAETLSELIRT--TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 224 -----EVADYAVSSMICGICAGDAKKI-------SVNFLMAKLFEL----EQLHGGVIKG 267
++A Y V++ + G G+ + S + A E V K
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK- 298
Query: 268 AIKEMMSKRPDLSGYEESELYRRSRIEKWSVW-SVEGG-----------------LQTIV 309
AI + G E Y + + + S+E +Q V
Sbjct: 299 AITVLF-----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 310 NTLGEHL--SNKVEV 322
N HL +VE+
Sbjct: 354 NKTNSHLPAGKQVEI 368
Score = 42.3 bits (99), Expect = 2e-04
Identities = 45/193 (23%), Positives = 63/193 (32%), Gaps = 45/193 (23%)
Query: 78 LLLLLVIRILCTVLRISTPITLLESSSRLGGWVRSVQSP----EGLIFEKGPRTIR---- 129
+L + +R S P ++LE S V SP L E+ +
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENN---EGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 130 --PKGR-----LGANTLK-LV-----EDL-GLADQVIPITSSHPTAQNRLIYVNKKLHKL 175
P G+ L N K LV + L GL + + Q+R+ + +KL
Sbjct: 359 HLPAGKQVEISL-VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK-- 415
Query: 176 PSNFFSL-----FKTHSPFSKPLIFSILHDLTTKTV--PKSDESI--YDFVS----RRFG 222
SN F L F HS P I DL V D I YD R
Sbjct: 416 FSNRF-LPVASPF--HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 223 SEVADYAVSSMIC 235
+++ V I
Sbjct: 473 GSISERIV-DCII 484
Score = 29.2 bits (65), Expect = 2.3
Identities = 40/285 (14%), Positives = 84/285 (29%), Gaps = 107/285 (37%)
Query: 110 VRSVQSPEGLIFEKGPRTIRPKGR-LGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYV 168
V +P L G KG+ + N ++ + + + + +
Sbjct: 1665 VI--NNPVNLTIHFGG----EKGKRIRENYSAMIFE------------TIVDGKLKTEKI 1706
Query: 169 NKKL-HKLPSNFFS-----LFKTHSPFSKPLIF----SILHDLTTKTVPKSDE-----SI 213
K++ S F L T F++P + + DL +K + +D S+
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQ--FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL 1764
Query: 214 YDFVSRRFGSEVADYAVSSMICGICAG-----DAKKISVNF---LMAKLFELEQLHGGVI 265
G E Y +++ A ++ V + M + + G
Sbjct: 1765 --------G-E---Y--AALAS--LADVMSIESLVEV-VFYRGMTMQV--AVPRDELGRS 1805
Query: 266 KGAIKEMMSKRPD---LSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEV 322
M++ P S +E+ LQ +V +G+ VE+
Sbjct: 1806 NYG---MIAINPGRVAASFSQEA-------------------LQYVVERVGKRTGWLVEI 1843
Query: 323 -----------------KMDTTCTNLEFL-EKGVKAVDQPIHQMT 349
+DT L F+ + + ++ ++
Sbjct: 1844 VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ-KSLS 1887
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 9e-05
Identities = 48/371 (12%), Positives = 114/371 (30%), Gaps = 124/371 (33%)
Query: 55 YLSFKFQDCHCETSIQKRPFPPDLLLLLVIRILCTVLR----------ISTPITLLESSS 104
+L+ K +C + P+ +L ++ + L + + + + +
Sbjct: 186 WLNLK----NCNS--------PETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 105 RLGGWVRSVQSPEGLIF---EKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTA 161
L ++S L+ + + L L + D + T++H +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 162 QNRLI-------------YVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPK 208
+ + Y++ + LP + T+ P SI+
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTN-----PRRLSII---------- 333
Query: 209 SDESIYDFVSR--RFGSEVADYAVSSMICGICAGDAKKISVNFL----MAKLFE------ 256
ESI D ++ + V ++++I + S+N L K+F+
Sbjct: 334 -AESIRDGLATWDNW-KHVNCDKLTTII---------ESSLNVLEPAEYRKMFDRLSVFP 382
Query: 257 ---------LEQLHGGVIKGAIKEMMS---------KRPDLSGYEESELYRRSR------ 292
L + VIK + +++ K+P S +Y +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 293 -------IEKWSV---WSVEGGLQT-----IVNTLGEHLSNKVEVKMDTTCT----NLEF 333
++ +++ + + + + +G HL N + T + F
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 334 LEKGVKAVDQP 344
LE+ ++
Sbjct: 503 LEQKIRHDSTA 513
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 40.6 bits (95), Expect = 6e-04
Identities = 33/257 (12%), Positives = 82/257 (31%), Gaps = 58/257 (22%)
Query: 98 TLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS 157
+LE+ R+GG ++++ + + G + P L+L ++LGL T
Sbjct: 31 VVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN---RILRLAKELGLE------TYK 81
Query: 158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVP---------- 207
+ + +V K + F ++ + + + D+ +
Sbjct: 82 VNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAE 141
Query: 208 -KSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIK 266
+ ++ + + + +E A + + + ++S + L+ ++Q G
Sbjct: 142 EWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWF---LWYVKQCGG---- 194
Query: 267 GAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDT 326
+ R+ GG + + + L ++V
Sbjct: 195 ---------TTRIISTTNGGQERK----------FVGGSGQVSERIMDLLGDRV------ 229
Query: 327 TCTNLEFLEKGVKAVDQ 343
LE+ V +DQ
Sbjct: 230 ------KLERPVIYIDQ 240
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 39.5 bits (92), Expect = 0.001
Identities = 27/263 (10%), Positives = 66/263 (25%), Gaps = 57/263 (21%)
Query: 96 PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
LLE+ R+GG S +G +E G + + + + + + + P
Sbjct: 64 KTLLLEARDRIGGRSWSSNI-DGYPYEMGGTWVHWHQS---HVWREITRYKMHNALSPSF 119
Query: 156 SSHPTAQNRLIYVNKKLHKLPSN-------------FFSLFKTHSPFSKPLIFSILHDLT 202
+ + + N ++ F ++ T+ P + +
Sbjct: 120 NFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPE 179
Query: 203 TKTVPKSDESIYDFVS--RRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQL 260
+ + S + + R S ++ + I G + S + +
Sbjct: 180 FR--KYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLH----WWAM 233
Query: 261 HGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKV 320
G G + + + + G E +
Sbjct: 234 SGY--------------TYQGCMDCLMSYK----------FKDGQSAFARRFWEEAAGTG 269
Query: 321 EVKMDTTCTNLEFLEKGVKAVDQ 343
+ V++V
Sbjct: 270 RLGY--------VFGCPVRSVVN 284
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 38.6 bits (90), Expect = 0.002
Identities = 34/237 (14%), Positives = 66/237 (27%), Gaps = 59/237 (24%)
Query: 97 ITLLESSSRLGGWVRSVQSPE--GLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIP- 153
+ LLE RLGG S +S GL E G + K ++ G+
Sbjct: 27 VLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKH--HPRLAAELDRYGIPTAAASE 84
Query: 154 ------------ITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDL 201
+ + P + + V + L + + K L L DL
Sbjct: 85 FTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDAHRI-----DLEKGLENQDLEDL 139
Query: 202 TTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLH 261
D + ++V + V+ + + + A + S +++ +L H
Sbjct: 140 --------DIPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASALWML----QLVAAH 187
Query: 262 GGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSN 318
+ G S G +V+ + + +
Sbjct: 188 HY--------------SILGVVLSLDEV-----------FSNGSADLVDAMSQEIPE 219
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 37.1 bits (85), Expect = 0.009
Identities = 22/172 (12%), Positives = 52/172 (30%), Gaps = 14/172 (8%)
Query: 95 TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPI 154
+LE+ R+GG +++V +G ++ G L L L D
Sbjct: 33 QDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHH--DTLTNPLFLEEAQLSLND----G 86
Query: 155 TSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIY 214
+ + IY++++ ++ + L + H + + +
Sbjct: 87 RTRFVFDDDNFIYIDEERGRVDHDKELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVM 146
Query: 215 DFVSRRFGSEVAD-----YAVSSMICGICAGDAKKISVNFLMAKLFELEQLH 261
++ +R D + + D K +S F + +
Sbjct: 147 KYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDT---YFGHQGRN 195
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 36.8 bits (85), Expect = 0.009
Identities = 35/244 (14%), Positives = 77/244 (31%), Gaps = 31/244 (12%)
Query: 97 ITLLESSSRLGGWVRSVQSPE-GLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
+T+LE+S R GG VR+ ++ E G GP + K R+ + + L ++ +
Sbjct: 59 VTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRI---VREYIRKFDL--RLNEFS 113
Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYD 215
+ N ++ K + K P+ S + +S + +
Sbjct: 114 QEND---NAWYFIKNIRKK----VGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVE 166
Query: 216 FVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSK 275
+ R S + + S + K +L +I + E
Sbjct: 167 ELKRTNCSYILN-------------KYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGY 213
Query: 276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLE 335
ES + + + G+ + + + +K V + ++ +
Sbjct: 214 YVSFI---ESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDK--VHFNAQVIKIQQND 268
Query: 336 KGVK 339
+ V
Sbjct: 269 QKVT 272
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 33.9 bits (78), Expect = 0.080
Identities = 20/158 (12%), Positives = 52/158 (32%), Gaps = 27/158 (17%)
Query: 98 TLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS 157
++E+ R+GG + +G + E G + + P + L+++LGL
Sbjct: 32 AVIEARDRVGGRTWTDTI-DGAVLEIGGQWVSPDQT---ALISLLDELGL-----KTFER 82
Query: 158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDL----------TTKTVP 207
+ ++ I + + + F + +K + ++ ++ P
Sbjct: 83 YREGESVYISSAGERTRYTGDSFPT----NETTKKEMDRLIDEMDDLAAQIGAEEPWAHP 138
Query: 208 KSDE----SIYDFVSRRFGSEVADYAVSSMICGICAGD 241
+ + S ++ + A + I G
Sbjct: 139 LARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTK 176
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.29
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 170 KKLHKLPSNFFSLFKTHSPFSKP 192
+ L KL + SL K ++ S P
Sbjct: 20 QALKKLQA---SL-KLYADDSAP 38
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 30.4 bits (69), Expect = 0.97
Identities = 27/250 (10%), Positives = 68/250 (27%), Gaps = 50/250 (20%)
Query: 98 TLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS 157
+ E GG ++ +G G + P G G ++++ + ++ +
Sbjct: 27 EVFERLPITGGRFTNLSY-KGFQLSSGAFHMLPNG-PGGPLACFLKEVEASVNIVRSEMT 84
Query: 158 H---PTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIY 214
P + YV ++F SL L+ ++T+ S S+
Sbjct: 85 TVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDRMKIALLI-----VSTRKNRPSGSSLQ 139
Query: 215 DFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMS 274
++ + + + K + +K
Sbjct: 140 AWIKSQVS-------------------------DEWLIKFADSFCGWALSLKS------- 167
Query: 275 KRPDLSGYEESELYR--RSRIEKWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNL 331
E++ + EGG + I++ L + +N ++ + +
Sbjct: 168 -----DEVPVEEVFEIIENMYRFGGTGIPEGGCKGIIDALETVISANGGKIHTGQEVSKI 222
Query: 332 EFLEKGVKAV 341
+
Sbjct: 223 LIENGKAAGI 232
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 352
Score = 28.4 bits (63), Expect = 3.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 257 LEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWS 297
LE L G +K + + ++R ++ SEL +KWS
Sbjct: 298 LEGLFGPEVKRVLAVLHTERENMRAGRGSELMDLLISKKWS 338
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR
{Escherichia coli}
Length = 90
Score = 26.1 bits (58), Expect = 6.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 208 KSDESIYDFVSRRFGSEV 225
KS + I D++ R+G+ V
Sbjct: 57 KSKKEIVDYMVARYGNFV 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.393
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,094,596
Number of extensions: 294458
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 27
Length of query: 350
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 256
Effective length of database: 4,077,219
Effective search space: 1043768064
Effective search space used: 1043768064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.8 bits)