RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7666
(350 letters)
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 77.9 bits (190), Expect = 1e-16
Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 15/245 (6%)
Query: 97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
LLESS+RLGG V + G + E+GP + + T L L L ++
Sbjct: 26 AVLLESSARLGGAVGTHALA-GYLVEQGPNSFLDREP---ATRALAAALNLEGRIRA--- 78
Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
+ P A+ R +Y +L +P++ + + + + + DES+ F
Sbjct: 79 ADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGELFSRRAPEGVDESLAAF 138
Query: 217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKR 276
R G + ++ GI AGD +++SV L ++E+ H +I GAI+ ++R
Sbjct: 139 GRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQR 198
Query: 277 PDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEK 336
+ ++ + +GGLQ +++ L L + L +
Sbjct: 199 QAA------LPAGTAPKLSGALSTFDGGLQVLIDALAASL--GDAAHVGARVEGLAREDG 250
Query: 337 GVKAV 341
G + +
Sbjct: 251 GWRLI 255
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 68.7 bits (166), Expect = 2e-13
Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 8/247 (3%)
Query: 97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
+T+ E+ + GG +RSV GLI+++G T+ + L++ LGL ++ S
Sbjct: 27 VTVFEAEGKAGGKLRSVSQD-GLIWDEGANTMTESEG---DVTFLIDSLGLREKQQFPLS 82
Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSIL-HDLTTKTVPKSDESIYD 215
+ R S F + + L+ IL + V S ES+
Sbjct: 83 QNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSG 142
Query: 216 FVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSK 275
F R FG EV DY + + G C GD +S++ +L+ LE+ G VI GAI+ +S
Sbjct: 143 FFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSP 202
Query: 276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLE 335
+ + ++ + +S GG+QT+ + + + L + E+++++ L
Sbjct: 203 KNEKKQGPPKTSA--NKKRQRGSFSFLGGMQTLTDAICKDL-REDELRLNSRVLELSCSC 259
Query: 336 KGVKAVD 342
A+D
Sbjct: 260 TEDSAID 266
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 50.9 bits (120), Expect = 9e-08
Identities = 19/177 (10%), Positives = 60/177 (33%), Gaps = 20/177 (11%)
Query: 97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
+ +LE+ R+GG ++++ + + G + P L+L ++LGL +
Sbjct: 25 VVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN---RILRLAKELGLETYKVNEVE 81
Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSD------ 210
+ +V K + F ++ + + + D+ + +
Sbjct: 82 R------LIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLA 135
Query: 211 -----ESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHG 262
++ + + + +E A + + + ++S + + + +
Sbjct: 136 EEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTR 192
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 44.4 bits (104), Expect = 1e-05
Identities = 19/157 (12%), Positives = 44/157 (28%), Gaps = 14/157 (8%)
Query: 97 ITLLESSSRLGGWVRSVQSPE--GLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPI 154
+ +++ +GG + E ++ GP N + ++
Sbjct: 28 VHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAEM--------- 78
Query: 155 TSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIY 214
P VN ++ LP N ++ + S P L + ++
Sbjct: 79 ---MPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALIAEKGDSTIADPQTFE 135
Query: 215 DFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLM 251
+ R G E+ + ++ + L
Sbjct: 136 EEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILK 172
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 449
Score = 44.1 bits (102), Expect = 2e-05
Identities = 31/233 (13%), Positives = 76/233 (32%), Gaps = 6/233 (2%)
Query: 97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
+TLLE+ R+GG V + + + + G + G G + + + + I
Sbjct: 31 VTLLEARDRVGGRVATFRKG-NYVADLGAMVVT--GLGGNPMAVVSKQVNMELAKIKQKC 87
Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
A + + K + F L + S S L F++L++ ++ ++ E +
Sbjct: 88 PLYEANGQAVPKE-KDEMVEQEFNRLLEATSYLSHQLDFNVLNN-KPVSLGQALEVVIQL 145
Query: 217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKR 276
+ E ++ + + VN +Q +++ ++
Sbjct: 146 QEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEF 205
Query: 277 PDLSGYEE-SELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTC 328
S + + + L + + +E LQ + + +
Sbjct: 206 LVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDW 258
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 298
Score = 38.6 bits (89), Expect = 7e-04
Identities = 18/150 (12%), Positives = 44/150 (29%), Gaps = 12/150 (8%)
Query: 97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
+ ++E + +GG + I + G + + ++
Sbjct: 27 VLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDK---------YIWDYVNDLVEF-- 75
Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
+ + L KL LP N + + +I++ K K E++ +
Sbjct: 76 -NRFTNSPLAIYKDKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKKYGDKVPENLEEQ 134
Query: 217 VSRRFGSEVADYAVSSMICGICAGDAKKIS 246
G ++ + AK++
Sbjct: 135 AISLVGEDLYQALIKGYTEKQWGRSAKELP 164
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 38.2 bits (87), Expect = 0.001
Identities = 28/240 (11%), Positives = 61/240 (25%), Gaps = 13/240 (5%)
Query: 97 ITLLESSSRLGGWVRSVQSPE-GLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
+T+LE+S R GG VR+ ++ E G GP + K R + + L
Sbjct: 56 VTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHR---IVREYIRKFDLRLNEFSQE 112
Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYD 215
+ N ++ K+ P L +++ K E +
Sbjct: 113 N-----DNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKR 167
Query: 216 FVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSK 275
++ Y+ + + + + + +
Sbjct: 168 TNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYE 227
Query: 276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLE 335
+ + + + V + KV V +T +
Sbjct: 228 KRFDEIVDGMDKLPTAMYRDIQDKVH---FNAQV-IKIQQNDQKVTVVYETLSKETPSVT 283
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 34.2 bits (76), Expect = 0.018
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTI 128
+ +LE++ +GG + G+ E G +
Sbjct: 27 LLILEATDHIGGRMHKTNFA-GINVELGANWV 57
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli
[TaxId: 562]}
Length = 417
Score = 31.1 bits (69), Expect = 0.22
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 98 TLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152
+++E L G +V P + F I+ LG +T ++++LG +D I
Sbjct: 355 SVVEVEQPLRGKYLTVGCP--MKFSAFTPDIKAAPLLGEHTAAVLQELGYSDDEI 407
>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter
formigenes [TaxId: 847]}
Length = 427
Score = 29.6 bits (65), Expect = 0.67
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 98 TLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152
T++E + G +V +P F I LG +T +++++LGL D I
Sbjct: 366 TVVEVVDEIRGNHLTVGAP--FKFSGFQPEITRAPLLGEHTDEVLKELGLDDAKI 418
>d1k0ia2 d.16.1.2 (A:174-275) p-Hydroxybenzoate hydroxylase (PHBH)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 102
Score = 27.0 bits (60), Expect = 1.2
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 154 ITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESI 213
+ + P + LIY N F+L S + L+ K SDE
Sbjct: 15 LLADTPPVSHELIYANH------PRGFALCSQRSATRSQYYVQV--PLSEKVEDWSDERF 66
Query: 214 YDFVSRRFGSEVAD 227
+ + R SEVA+
Sbjct: 67 WTELKARLPSEVAE 80
>d1y6kr2 b.1.2.1 (R:101-206) Interleukin-10 receptor 1, IL-10R1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 27.1 bits (60), Expect = 1.5
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 8 IYFVVTRRTTQVESFDKKKIISSEFTLKIPTLSESTCLYLQPLPEAR 54
Y + R+ +F KK+ +F+L C+ ++P +R
Sbjct: 45 EYEIAIRKVPGQFTFTHKKVKHEQFSLLTSGEVGEFCVQVKPSVASR 91
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 347
Score = 26.5 bits (58), Expect = 4.6
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 264 VIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGL-QTIVNTLGEHLSNKVEV 322
+ A++ + S Y ELY+ +E V L + + +H+ ++
Sbjct: 11 KLHEAVRAVQSSTS--IRYNLEELYQA--VENLCSHKVSPMLYKQLRQACEDHVQAQILP 66
Query: 323 KMDTTCTNLEFLEKGVKA 340
+ + ++ FL+K
Sbjct: 67 FREDSLDSVLFLKKINTC 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.393
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,246,622
Number of extensions: 56632
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 13
Length of query: 350
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 264
Effective length of database: 1,226,816
Effective search space: 323879424
Effective search space used: 323879424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)