BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy767
(902 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 829 DDLMPQPLQYVPSMFIPRGQPLR-CLDKDPLRRWSCDQLLRHPYFN 873
+D+ P L++ P++ P L+ CL DP R +C+QLL HPYF
Sbjct: 245 EDMEPLELKF-PNISYPALGLLKGCLHMDPTERLTCEQLLHHPYFE 289
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 853 LDKDPLRRWSCDQLLRHPYFNG 874
++KDP +R++C+Q RHP+ G
Sbjct: 261 MEKDPNKRYTCEQAARHPWIAG 282
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 853 LDKDPLRRWSCDQLLRHPYFNG 874
++KDP +R++C+Q L+HP+ G
Sbjct: 257 MEKDPEKRFTCEQALQHPWIAG 278
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 853 LDKDPLRRWSCDQLLRHPYFNG 874
++KDP +R++C+Q L+HP+ G
Sbjct: 257 MEKDPEKRFTCEQALQHPWIAG 278
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 853 LDKDPLRRWSCDQLLRHPYFNG 874
++KDP +R++C+Q L+HP+ G
Sbjct: 257 MEKDPEKRFTCEQALQHPWIAG 278
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 853 LDKDPLRRWSCDQLLRHPYFNG 874
++KDP +R++C+Q L+HP+ G
Sbjct: 257 MEKDPEKRFTCEQALQHPWIAG 278
>pdb|3I4X|A Chain A, Crystal Structure Of The Dimethylallyl Tryptophan Synthase
Fgapt2 From Aspergillus Fumigatus In Complex With Trp
And Dmspp
pdb|3I4X|B Chain B, Crystal Structure Of The Dimethylallyl Tryptophan Synthase
Fgapt2 From Aspergillus Fumigatus In Complex With Trp
And Dmspp
pdb|3I4Z|A Chain A, Crystal Structure Of The Dimethylallyl Tryptophan Synthase
Fgapt2 From Aspergillus Fumigatus
pdb|3I4Z|B Chain B, Crystal Structure Of The Dimethylallyl Tryptophan Synthase
Fgapt2 From Aspergillus Fumigatus
Length = 465
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 173 NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSI 213
NDMA A+ + T + G A+TY + Y H D D +
Sbjct: 358 NDMAVADALTTFFERRGWSEMARTYETTLKSYYPHADHDKL 398
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 243 SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLA 288
+DMA A+ + T + G A+TY + Y H D D + L A
Sbjct: 358 NDMAVADALTTFFERRGWSEMARTYETTLKSYYPHADHDKLNYLHA 403
>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs
Resolution)
Length = 362
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 827 TSDDLMPQPLQYVP----SMFIPRGQPL------RCLDKDPLRRWSCDQLLRHPYFNGYY 876
++ D + L VP + +P P+ + L+ +P RR S +Q LRHPYF +
Sbjct: 265 SARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFESLF 324
>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With
Sb203580
Length = 362
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 827 TSDDLMPQPLQYVP----SMFIPRGQPL------RCLDKDPLRRWSCDQLLRHPYFNGYY 876
++ D + L VP + +P P+ + L+ +P RR S +Q LRHPYF +
Sbjct: 265 SARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFESLF 324
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 853 LDKDPLRRWSCDQLLRHPYFNG 874
L+KDP R++C++ L HP+ +G
Sbjct: 246 LEKDPNERYTCEKALSHPWIDG 267
>pdb|1QU1|A Chain A, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|B Chain B, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|C Chain C, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|D Chain D, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|E Chain E, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185)
Length = 155
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 78 DVPLDISHYNALLRVYLDNEHTFSPTDF-LAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
D +D+ YNA L V L+N+HT TD + KL + R +++ + S I C
Sbjct: 56 DTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEEMGNGSFKIYHKCD 115
Query: 137 DGNIE 141
+ IE
Sbjct: 116 NACIE 120
>pdb|3EYJ|B Chain B, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYK|B Chain B, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
Length = 172
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 78 DVPLDISHYNALLRVYLDNEHTFSPTD 104
D +D+ YNA L V L+N+HT TD
Sbjct: 86 DTKIDLWSYNAELLVALENQHTIDVTD 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,812,201
Number of Sequences: 62578
Number of extensions: 1007450
Number of successful extensions: 2540
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2526
Number of HSP's gapped (non-prelim): 15
length of query: 902
length of database: 14,973,337
effective HSP length: 108
effective length of query: 794
effective length of database: 8,214,913
effective search space: 6522640922
effective search space used: 6522640922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)