BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy767
(902 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28C74|LPPRC_XENTR Leucine-rich PPR motif-containing protein, mitochondrial OS=Xenopus
tropicalis GN=lrpprc PE=2 SV=1
Length = 1391
Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 109/146 (74%), Gaps = 6/146 (4%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
EL D+SHYNALL+VYL NEH FSPT++LAK+E+ ++PNRVTYQ +LI+ YC
Sbjct: 139 ELGAVFDVSHYNALLKVYLQNEHKFSPTEYLAKMEAANVQPNRVTYQ------RLIAAYC 192
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
+G+IEGA+KIL FM++K PI+E VFN L+ GH++A DM +A+ IL++M AG+EP +
Sbjct: 193 NEGDIEGASKILGFMKNKDLPITEAVFNTLVTGHARAGDMENAKNILSVMRSAGIEPGPE 252
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLK 221
TY L+ YA+ GD+++IK + +++
Sbjct: 253 TYVALLTAYAEKGDINNIKQTLENVE 278
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 23/222 (10%)
Query: 252 LTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHAL---AV 308
L M A ++P+ TY +L+ Y GD++ ++L + N D L I A+ V
Sbjct: 169 LAKMEAANVQPNRVTYQRLIAAYCNEGDIEGASKILG----FMKNKD-LPITEAVFNTLV 223
Query: 309 SGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRL 368
+GH D +A NI +M AG+EP +TY L+ YA+ GD+++I++
Sbjct: 224 TGHARAGDMENA----KNIL------SVMRSAGIEPGPETYVALLTAYAEKGDINNIKQT 273
Query: 369 LA---QNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKG 425
L +N SL + D + +I +LA +G+ +Y+ +I+ +++ GY DA N L+ +G
Sbjct: 274 LENVEKNEGSLTDRDLMQVIWSLAKAGYPQYVQDIVERMRYDRGYIPDAMNLCLSLMTQG 333
Query: 426 QIDAAYRIVNTLARSA--NINGEQLPVGGFLVRHMVKTNQPG 465
D A+ ++ + + ++ + NG+ L G F +RH V ++P
Sbjct: 334 FEDVAFLVLKSFSAASHDSPNGDSLHHGNFFLRHCVNLDKPA 375
Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 13/186 (6%)
Query: 141 EGATKILEFMRD--KTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198
E A +I E +++ F +S +NAL+ + Q S L M A ++P+ TY
Sbjct: 128 EMAHRIWEKLQELGAVFDVSH--YNALLKVYLQNEHKFSPTEYLAKMEAANVQPNRVTYQ 185
Query: 199 KLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL---VSSDMASAEGILTMM 255
+L+ Y GD++ + +K + L + + N L+ + DM +A+ IL++M
Sbjct: 186 RLIAAYCNEGDIEGASKILGFMKNKD---LPITEAVFNTLVTGHARAGDMENAKNILSVM 242
Query: 256 SQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL---AQSGSSLVNGDYLDIIHALAVSGHG 312
AG+EP +TY L+ YA+ GD++++++ L ++ SL + D + +I +LA +G+
Sbjct: 243 RSAGIEPGPETYVALLTAYAEKGDINNIKQTLENVEKNEGSLTDRDLMQVIWSLAKAGYP 302
Query: 313 EYIDEV 318
+Y+ ++
Sbjct: 303 QYVQDI 308
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 548 LIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGE 607
L+ H+ K D A+ET C ++ P ++L R ++ D LQ+ D + GE
Sbjct: 822 LVSVHLEKGDLPAAMETLFTCSKKYNCMPRLHDVLCRLVEKGDTDLLQKAMDHISQERGE 881
Query: 608 VNSLYDLMLSFL 619
+ LYDL+ +FL
Sbjct: 882 MAMLYDLLFAFL 893
>sp|Q5SGE0|LPPRC_RAT Leucine-rich PPR motif-containing protein, mitochondrial OS=Rattus
norvegicus GN=Lrpprc PE=1 SV=1
Length = 1392
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 111/161 (68%), Gaps = 10/161 (6%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+SHYNALL+VYL NE+ FSPTDFLAK+E I+PNRVTYQ +LI+ YC G+IE
Sbjct: 160 DVSHYNALLKVYLQNEYRFSPTDFLAKMEGANIQPNRVTYQ------RLIAAYCSVGDIE 213
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
GA+KIL FM+ + PI+E VF+AL+ GH++A DM SAE ILT+M QAG+EP TY L+
Sbjct: 214 GASKILGFMKTRDLPITEAVFSALVTGHARAGDMESAENILTVMKQAGIEPGPDTYLALL 273
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242
+A+ GD+D +K + ++ F+ F L I+VS
Sbjct: 274 NAHAEKGDIDHVKQILEKVEKSDHYFMDRDF----LQIIVS 310
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 17/222 (7%)
Query: 247 SAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHAL 306
S L M A ++P+ TY +L+ Y GD++ ++L + + + + +
Sbjct: 179 SPTDFLAKMEGANIQPNRVTYQRLIAAYCSVGDIEGASKILGFMKTR--DLPITEAVFSA 236
Query: 307 AVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIR 366
V+GH D SA NI +M QAG+EP TY L+ +A+ GD+D ++
Sbjct: 237 LVTGHARAGDMESA----ENIL------TVMKQAGIEPGPDTYLALLNAHAEKGDIDHVK 286
Query: 367 RLLAQNGSS---LVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLIN 423
++L + S ++ D+L II + + +G+ +Y+ EI+ KI DA N I L+
Sbjct: 287 QILEKVEKSDHYFMDRDFLQIIVSFSKAGYPQYVSEILEKITYERRSIPDAMNLILLLVT 346
Query: 424 KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPG 465
+ D A++++ L + + G F +RH V + P
Sbjct: 347 EKLEDTAFQVLLALPLARDETSSSF--GSFFLRHCVTMDTPA 386
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 11/164 (6%)
Query: 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLK 221
+NAL+ + Q S L M A ++P+ TY +L+ Y GD++ + +K
Sbjct: 164 YNALLKVYLQNEYRFSPTDFLAKMEGANIQPNRVTYQRLIAAYCSVGDIEGASKILGFMK 223
Query: 222 ----PQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 277
P +E FS +T + DM SAE ILT+M QAG+EP TY L+ +A+
Sbjct: 224 TRDLPITEA--VFSALVTGHA--RAGDMESAENILTVMKQAGIEPGPDTYLALLNAHAEK 279
Query: 278 GDMDSVRRLLAQSGSS---LVNGDYLDIIHALAVSGHGEYIDEV 318
GD+D V+++L + S ++ D+L II + + +G+ +Y+ E+
Sbjct: 280 GDIDHVKQILEKVEKSDHYFMDRDFLQIIVSFSKAGYPQYVSEI 323
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 143 ATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTY 197
A ++E +RD+ FPI F L+ GH + ++ IL +M + G++P +TY
Sbjct: 422 AKAVMEALRDEGFPIRTHYFWPLLVGHQKTKNVQGIIDILKIMKEMGVDPDQETY 476
Score = 42.4 bits (98), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 548 LIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGE 607
L+ H+ K+D A+E C +++ P ++L + I+ + +Q+ D + GE
Sbjct: 827 LVTVHLEKDDLPAALEASIACHEKYKVLPRIHDVLCKLIEKGETDLIQKAMDFVSQEQGE 886
Query: 608 VNSLYDLMLSFL 619
++ LYDL +FL
Sbjct: 887 MSMLYDLFFAFL 898
>sp|P42704|LPPRC_HUMAN Leucine-rich PPR motif-containing protein, mitochondrial OS=Homo
sapiens GN=LRPPRC PE=1 SV=3
Length = 1394
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 107/147 (72%), Gaps = 7/147 (4%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+SHYNALL+VYL NE+ FSPTDFLAK+E I+PNRVTYQ +LI+ YC G+IE
Sbjct: 161 DVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQ------RLIASYCNVGDIE 214
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
GA+KIL FM+ K P++E VF+AL+ GH++A DM +AE ILT+M AG+EP TY L+
Sbjct: 215 GASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALL 274
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFL 228
YA+ GD+D +K + ++ +SEL L
Sbjct: 275 NAYAEKGDIDHVKQTLEKVE-KSELHL 300
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 21/223 (9%)
Query: 247 SAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHAL 306
S L M +A ++P+ TY +L+ Y GD++ ++L + + + + +
Sbjct: 180 SPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTK--DLPVTEAVFSA 237
Query: 307 AVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIR 366
V+GH D +A NI +M AG+EP TY L+ YA+ GD+D ++
Sbjct: 238 LVTGHARAGDMENA----ENIL------TVMRDAGIEPGPDTYLALLNAYAEKGDIDHVK 287
Query: 367 RLLAQNGSS---LVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLIN 423
+ L + S L++ D L II + + +G+ +Y+ EI+ K+ Y DA N I L+
Sbjct: 288 QTLEKVEKSELHLMDRDLLQIIFSFSKAGYPQYVSEILEKVTCERRYIPDAMNLILLLVT 347
Query: 424 KGQIDAAYRIVNTLARSANINGEQLP--VGGFLVRHMVKTNQP 464
+ D A +I+ + ++ E P G F ++H V N P
Sbjct: 348 EKLEDVALQIL----LACPVSKEDGPSVFGSFFLQHCVTMNTP 386
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLK 221
+NAL+ + Q S L M +A ++P+ TY +L+ Y GD++ + +K
Sbjct: 165 YNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMK 224
Query: 222 ----PQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 277
P +E FS +T + DM +AE ILT+M AG+EP TY L+ YA+
Sbjct: 225 TKDLPVTEA--VFSALVTGHA--RAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEK 280
Query: 278 GDMDSVRRLLAQSGSS---LVNGDYLDIIHALAVSGHGEYIDEV-SAIVC 323
GD+D V++ L + S L++ D L II + + +G+ +Y+ E+ + C
Sbjct: 281 GDIDHVKQTLEKVEKSELHLMDRDLLQIIFSFSKAGYPQYVSEILEKVTC 330
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 548 LIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGE 607
L+ H+ K D + A+E C +++ P ++L + ++ + +Q+ D + GE
Sbjct: 828 LVTVHLEKGDLSTALEVAIDCYEKYKVLPRIHDVLCKLVEKGETDLIQKAMDFVSQEQGE 887
Query: 608 VNSLYDLMLSFL 619
+ LYDL +FL
Sbjct: 888 MVMLYDLFFAFL 899
>sp|Q6PB66|LPPRC_MOUSE Leucine-rich PPR motif-containing protein, mitochondrial OS=Mus
musculus GN=Lrpprc PE=1 SV=2
Length = 1392
Score = 166 bits (419), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 108/157 (68%), Gaps = 6/157 (3%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
+L V D+SHYNALL+VYL NE+ FSPTDFLAK+E I+PNRVTYQ +LI+ YC
Sbjct: 154 QLGVVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEGANIQPNRVTYQ------RLIAAYC 207
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
G+IEGA+KIL FM+ K PI+E VF+AL+ GH++A DM +AE ILT+M QAG+EP
Sbjct: 208 NVGDIEGASKILGFMKTKDLPITEAVFSALVTGHARAGDMENAENILTVMKQAGIEPGPD 267
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSF 232
TY L+ +A+ GD+ ++ + ++ F+ F
Sbjct: 268 TYLALLNAHAERGDIGQVRQILEKVEKSDHYFMDRDF 304
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 23/224 (10%)
Query: 247 SAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHAL 306
S L M A ++P+ TY +L+ Y GD++ ++L + L I A+
Sbjct: 179 SPTDFLAKMEGANIQPNRVTYQRLIAAYCNVGDIEGASKILG-----FMKTKDLPITEAV 233
Query: 307 ---AVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMD 363
V+GH D +A NI +M QAG+EP TY L+ +A+ GD+
Sbjct: 234 FSALVTGHARAGDMENA----ENIL------TVMKQAGIEPGPDTYLALLNAHAERGDIG 283
Query: 364 SIRRLLAQNGSS---LVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYH 420
+R++L + S ++ D+L +I + + +G+ +Y+ EI+ KI DA N I
Sbjct: 284 QVRQILEKVEKSDHYFMDRDFLQVIFSFSKAGYPQYVSEILEKITYERRSIPDAMNLILF 343
Query: 421 LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQP 464
L + D A++++ L S + + + G F +RH V + P
Sbjct: 344 LATEKLEDTAFQVLLALPLSKDESSDNF--GSFFLRHCVTLDLP 385
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLK 221
+NAL+ + Q S L M A ++P+ TY +L+ Y GD++ +KI
Sbjct: 164 YNALLKVYLQNEYKFSPTDFLAKMEGANIQPNRVTYQRLIAAYCNVGDIEG-ASKILGFM 222
Query: 222 PQSELFL---CFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG 278
+L + FS +T + DM +AE ILT+M QAG+EP TY L+ +A+ G
Sbjct: 223 KTKDLPITEAVFSALVTGHA--RAGDMENAENILTVMKQAGIEPGPDTYLALLNAHAERG 280
Query: 279 DMDSVRRLLAQSGSS---LVNGDYLDIIHALAVSGHGEYIDEV 318
D+ VR++L + S ++ D+L +I + + +G+ +Y+ E+
Sbjct: 281 DIGQVRQILEKVEKSDHYFMDRDFLQVIFSFSKAGYPQYVSEI 323
Score = 41.2 bits (95), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 118 RVTYQQLISNSKLISKYC--QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDM 175
R+ +L S+S + +C Q A ++E +R++ FPI F L+ GH + ++
Sbjct: 395 RLRDAKLHSSSLQFTLHCALQANRTALAKAVMEALREEGFPIRPHYFWPLLAGHQKTKNV 454
Query: 176 ASAEGILTMMSQAGLEPSAQTY 197
IL +M++ G++P +TY
Sbjct: 455 QGIIDILKIMNKVGVDPDQETY 476
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 548 LIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGE 607
L+ H+ K D A+E C +++ P ++L + ++ + +Q+ D + GE
Sbjct: 827 LVTVHLEKGDLPAALEASIACHKKYKVLPRIHDVLCKLVEKGETDLIQKAMDFVSQEQGE 886
Query: 608 VNSLYDLMLSFL 619
+ LYDL +FL
Sbjct: 887 MTMLYDLFFAFL 898
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 89.7 bits (221), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 109/495 (22%), Positives = 187/495 (37%), Gaps = 93/495 (18%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
YNAL+ ++ G+ PN VTY S LI +C+ G ++ A
Sbjct: 370 YNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTY------SILIDMFCRRGKLDTALS 423
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
L M D +S +N+LI GH + D+++AEG + M LEP+ TYT LM GY
Sbjct: 424 FLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYC 483
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL--ILVSSDMASAEGILTMMSQAGLEPS 263
G ++ + + ++F T LL + + + A + M++ ++P+
Sbjct: 484 SKGKINKALRLYHEMTGKGIAPSIYTF--TTLLSGLFRAGLIRDAVKLFNEMAEWNVKPN 541
Query: 264 AQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGE----YID 316
TY ++ GY + GDM L + + D Y +IH L ++G ++D
Sbjct: 542 RVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVD 601
Query: 317 EVSAIVCFVN-ICFHWL------EGPM--------------------------------- 336
+ C +N IC+ L EG +
Sbjct: 602 GLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHK 661
Query: 337 -----------MSQAGLEPSAQTYTKLMCGYAKHGDMD---SIRRLLAQNGSSLVNGDYL 382
M GL+P YT ++ +K GD I L+ G Y
Sbjct: 662 DRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYT 721
Query: 383 DIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYH-----LINKGQID--AAYRIVN 435
+I+ L +G + + SK+QP + N + + ++ KG++D A + N
Sbjct: 722 AVINGLCKAGFVNEAEVLCSKMQP----VSSVPNQVTYGCFLDILTKGEVDMQKAVELHN 777
Query: 436 TLARS--ANINGEQLPVGGFLVRHMVK------TNQPGVGYSADAANH---IYHLINKGQ 484
+ + AN + + GF + ++ T G G S D + I L +
Sbjct: 778 AILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRND 837
Query: 485 IDAAYRIVNTLARSA 499
+ A + N++
Sbjct: 838 VKKAIELWNSMTEKG 852
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 136/363 (37%), Gaps = 52/363 (14%)
Query: 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLI--------------- 125
++I YN L+ + + L + ++P+ VTY L+
Sbjct: 260 VNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEM 319
Query: 126 --------------SNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ 171
+ S L+ + G IE A +++ + D + V+NALI +
Sbjct: 320 MDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCK 379
Query: 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFS 231
AE + M + GL P+ TY+ L+ + + G +D T + L + L S
Sbjct: 380 GRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLD---TALSFLGEMVDTGLKLS 436
Query: 232 FQLTNLLI---LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLA 288
N LI D+++AEG + M LEP+ TYT LM GY G ++ RL
Sbjct: 437 VYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYH 496
Query: 289 Q-SGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQ 347
+ +G + Y + G D V M++ ++P+
Sbjct: 497 EMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLF-------------NEMAEWNVKPNRV 543
Query: 348 TYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD---YLDIIHALAVSGHGEYIDEIISKI 404
TY ++ GY + GDM L + + D Y +IH L ++G + +
Sbjct: 544 TYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGL 603
Query: 405 QPG 407
G
Sbjct: 604 HKG 606
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 115/298 (38%), Gaps = 40/298 (13%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+ Y ++R + + + +A +E+ G + N V Y LI C+ +
Sbjct: 226 DVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDG------LCKKQKVW 279
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A I + + K + L+YG + + ++ M PS + L+
Sbjct: 280 EAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLV 339
Query: 202 CGYAKHGDMD---SIKTKIPSLKPQSELFLCFSFQLTNLLI---LVSSDMASAEGILTMM 255
G K G ++ ++ ++ LF + N LI AE + M
Sbjct: 340 EGLRKRGKIEEALNLVKRVVDFGVSPNLF------VYNALIDSLCKGRKFHEAELLFDRM 393
Query: 256 SQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ---SGSSLVNGDYLDIIHALAVSGHG 312
+ GL P+ TY+ L+ + + G +D+ L + +G L Y +I+ GH
Sbjct: 394 GKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLIN-----GHC 448
Query: 313 EYIDEVSAIVCFVNICFHWLEGPM--MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRL 368
++ D +A EG M M LEP+ TYT LM GY G ++ RL
Sbjct: 449 KFGDISAA------------EGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRL 494
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 20/136 (14%)
Query: 75 GELDVPLDISHYNALLRVYLDNEHTFS--------------PTDFLAKLESQGIEPNRVT 120
GE+D+ + +NA+L+ L N T++ ++ + ++ G+ P+ +T
Sbjct: 765 GEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCIT 824
Query: 121 YQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEG 180
Y + +I++ C+ +++ A ++ M +K +N LI+G A +M A
Sbjct: 825 Y------TTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATE 878
Query: 181 ILTMMSQAGLEPSAQT 196
+ M + GL P+ +T
Sbjct: 879 LRNEMLRQGLIPNNKT 894
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 26/268 (9%)
Query: 106 LAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165
+++ QGI P+ V Y + LI +C+ G+I A+K M + + A+
Sbjct: 339 FSEMIRQGILPDTVVY------TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 392
Query: 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM-DSIKTKIPSLKPQS 224
I G Q DM A + M GLEP + T+T+L+ GY K G M D+ + ++
Sbjct: 393 ISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGC 452
Query: 225 ELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284
+ L + L D+ SA +L M + GL+P+ TY ++ G K G+++
Sbjct: 453 SPNVVTYTTLIDGLC-KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511
Query: 285 RLLAQSGSSLVNGD---YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAG 341
+L+ + ++ +N D Y ++ A SG +D+ I+ M G
Sbjct: 512 KLVGEFEAAGLNADTVTYTTLMDAYCKSGE---MDKAQEIL------------KEMLGKG 556
Query: 342 LEPSAQTYTKLMCGYAKHGDMDSIRRLL 369
L+P+ T+ LM G+ HG ++ +LL
Sbjct: 557 LQPTIVTFNVLMNGFCLHGMLEDGEKLL 584
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 150/337 (44%), Gaps = 31/337 (9%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
E+ V +++ YN ++ L +E +G P+ ++Y S +++ YC
Sbjct: 239 EVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISY------STVVNGYC 292
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
+ G ++ K++E M+ K + ++ ++I + +A AE + M + G+ P
Sbjct: 293 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTV 352
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQ--SELFLCFSFQLTNLLILVSSDMASAEGILT 253
YT L+ G+ K GD+ + + + + L ++ ++ + DM A +
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQI--GDMVEAGKLFH 410
Query: 254 MMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRL---LAQSGSSLVNGDYLDIIHALAVSG 310
M GLEP + T+T+L+ GY K G M R+ + Q+G S Y +I L G
Sbjct: 411 EMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 470
Query: 311 HGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLA 370
+ +E+ H M + GL+P+ TY ++ G K G+++ +L+
Sbjct: 471 DLDSANEL----------LH-----EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVG 515
Query: 371 QNGSSLVNGD---YLDIIHALAVSGHGEYIDEIISKI 404
+ ++ +N D Y ++ A SG + EI+ ++
Sbjct: 516 EFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 552
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 133/336 (39%), Gaps = 64/336 (19%)
Query: 67 EDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLIS 126
E+ FS + +P D Y L+ + + + F ++ S+ I P+ +TY
Sbjct: 336 EEAFSEMIRQGILP-DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY----- 389
Query: 127 NSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMS 186
+ +IS +CQ G++ A K+ M K F LI G+ +A M A + M
Sbjct: 390 -TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 448
Query: 187 QAGLEPSAQTYTKLMCGYAKHGDMDSIKT---KIPSLKPQSELF--------LCFSFQLT 235
QAG P+ TYT L+ G K GD+DS ++ + Q +F LC S +
Sbjct: 449 QAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE 508
Query: 236 NLLILV------------------------SSDMASAEGILTMMSQAGLEPSAQTYTKLM 271
+ LV S +M A+ IL M GL+P+ T+ LM
Sbjct: 509 EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLM 568
Query: 272 CGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHW 331
G+ HG + + G L+N + A ++ + + + C N
Sbjct: 569 NGFCLHG--------MLEDGEKLLNW-----MLAKGIAPNATTFNSLVKQYCIRNN---- 611
Query: 332 LEGPM-----MSQAGLEPSAQTYTKLMCGYAKHGDM 362
L+ M G+ P +TY L+ G+ K +M
Sbjct: 612 LKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 111 SQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHS 170
++GI PN T+ + L+ +YC N++ AT I + M + + L+ GH
Sbjct: 589 AKGIAPNATTF------NSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC 642
Query: 171 QANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 207
+A +M A + M G S TY+ L+ G+ K
Sbjct: 643 KARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKR 679
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 121/312 (38%), Gaps = 64/312 (20%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D YN++L Y + FL K+ S G+EP+ VTY S L+ C++G
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTY------SLLMDYLCKNGRCM 318
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A KI + M + + L+ G++ + G+L +M + G+ P ++ L+
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE 261
C YAK G +D + L FS M Q GL
Sbjct: 379 CAYAKQGKVD-------------QAMLVFS----------------------KMRQQGLN 403
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQ---SGSSLVNGDYLDIIHALAVSGHGEYIDE- 317
P+A TY ++ K G ++ Q G S N Y +IH L E +E
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 463
Query: 318 ----VSAIVCFVNICF------HWLEG---------PMMSQAGLEPSAQTYTKLMCGYAK 358
+ +C I F H EG +M + G++P+ TY L+ GY
Sbjct: 464 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCL 523
Query: 359 HGDMDSIRRLLA 370
G MD +LL+
Sbjct: 524 AGKMDEAMKLLS 535
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 133/333 (39%), Gaps = 26/333 (7%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFL---AKLESQGIEPNRVTYQQLISNSKLIS 132
EL ++ YN LL+ D + + L A G P+ V+Y + +I+
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY------TTVIN 204
Query: 133 KYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP 192
+ ++G+ + A M D+ +N++I +A M A +L M + G+ P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264
Query: 193 SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGIL 252
TY ++ GY G + ++ ++ L + + A I
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIF 324
Query: 253 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD-YLDIIHALAVSGH 311
M++ GL+P TY L+ GYA G + + LL + ++ D Y+ I A +
Sbjct: 325 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQ 384
Query: 312 GEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
G+ +D+ A++ F M Q GL P+A TY ++ K G ++ Q
Sbjct: 385 GK-VDQ--AMLVF----------SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431
Query: 372 ---NGSSLVNGDYLDIIHALAVSGHGEYIDEII 401
G S N Y +IH L E +E+I
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 83/192 (43%), Gaps = 6/192 (3%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
YN+L+ + + ++ +GI N + + +I + +C++G + + K
Sbjct: 444 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS------HCKEGRVIESEK 497
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+ E M + +N LI G+ A M A +L+ M GL+P+ TY+ L+ GY
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQ 265
K M+ ++ ++ + + + A+A+ + ++++G +
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 617
Query: 266 TYTKLMCGYAKH 277
TY ++ G K+
Sbjct: 618 TYNIILHGLCKN 629
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 48/379 (12%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
+N ++ H D ++E++GI PN VTY + LI+ C G A++
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTY------NSLINCLCNYGRWSDASR 314
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+L M +K + FNALI + + AE + M Q ++P TY L+ G+
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFC 374
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCF-SFQLTNLLILVSSDMASAEG---ILTMMSQAGLE 261
H +D K + + C + Q N LI E + MSQ GL
Sbjct: 375 MHNRLDEAKQMFKFMVSKD----CLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLV 430
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAI 321
+ TYT ++ G+ + GD DS + + Q S+ V D + +++ + G Y +A+
Sbjct: 431 GNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIM--TYSILLHGLCSYGKLDTAL 488
Query: 322 VCF---------VNICFH--WLEGPMMSQAG-------------LEPSAQTYTKLMCGYA 357
V F +NI + +EG M +AG ++P TY ++ G
Sbjct: 489 VIFKYLQKSEMELNIFIYNTMIEG--MCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLC 546
Query: 358 KH---GDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADA 414
+ D + R + ++G+ +G Y +I A E+I +++ G+ DA
Sbjct: 547 SKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSS-GFVGDA 605
Query: 415 A--NHIYHLINKGQIDAAY 431
+ + + ++++ G++D ++
Sbjct: 606 STISLVTNMLHDGRLDKSF 624
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 132/328 (40%), Gaps = 43/328 (13%)
Query: 72 VHTGELDVPLDISH----YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISN 127
+ GE L ISH Y+ + + LAK+ G EP+ VT
Sbjct: 103 ISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTL------ 156
Query: 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ 187
S L++ YC I A +++ M + + F LI+G N + A ++ M Q
Sbjct: 157 SSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ 216
Query: 188 AGLEPSAQTYTKLMCGYAKHGDMD---SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSD 244
G +P TY ++ G K GD+D ++ K+ + + ++ + + F+ + +L +
Sbjct: 217 RGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI-FNTIIDSLCKYRHVE 275
Query: 245 MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIH 304
+A + T M G+ P+ TY L+ +G RLL+ +N + + +
Sbjct: 276 VAV--DLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVV-TFN 332
Query: 305 AL--AVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDM 362
AL A G+ ++ H M Q ++P TY L+ G+ H +
Sbjct: 333 ALIDAFFKEGKLVEAEK---------LH----EEMIQRSIDPDTITYNLLINGFCMHNRL 379
Query: 363 DSIRRLLA-----------QNGSSLVNG 379
D +++ Q ++L+NG
Sbjct: 380 DEAKQMFKFMVSKDCLPNIQTYNTLING 407
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 103/263 (39%), Gaps = 36/263 (13%)
Query: 121 YQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIY--GHSQANDMASA 178
+ ++ +KL+S + E + E M +T IS ++ I+ + + ++ A
Sbjct: 80 FPSIVEFNKLLSAVAKMNKFELVISLGEQM--QTLGISHDLYTYSIFINCFCRRSQLSLA 137
Query: 179 EGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSL-----KPQSELFLCFSFQ 233
+L M + G EP T + L+ GY + + + KP +F
Sbjct: 138 LAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPD-------TFT 190
Query: 234 LTNLL--ILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291
T L+ + + + + A ++ M Q G +P TY ++ G K GD+D LL +
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKME 250
Query: 292 SSLVNGD---YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQT 348
++ + + + II +L H E A+ F M G+ P+ T
Sbjct: 251 AARIKANVVIFNTIIDSLCKYRHVEV-----AVDLFTE----------METKGIRPNVVT 295
Query: 349 YTKLMCGYAKHGDMDSIRRLLAQ 371
Y L+ +G RLL+
Sbjct: 296 YNSLINCLCNYGRWSDASRLLSN 318
Score = 40.8 bits (94), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 109/263 (41%), Gaps = 26/263 (9%)
Query: 192 PSAQTYTKLMCGYAKHGDMD---SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASA 248
PS + KL+ AK + S+ ++ +L +L+ ++ + S ++ A
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLY---TYSIFINCFCRRSQLSLA 137
Query: 249 EGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAV 308
+L M + G EP T + L+ GY + L+ Q +V Y
Sbjct: 138 LAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQ----MVEMGYKPDTFTFTT 193
Query: 309 SGHGEYI-DEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRR 367
HG ++ ++ S V V+ M Q G +P TY ++ G K GD+D
Sbjct: 194 LIHGLFLHNKASEAVALVD---------QMVQRGCQPDLVTYGTVVNGLCKRGDIDLALN 244
Query: 368 LLAQNGSSLVNGD---YLDIIHALAVSGHGEYIDEIISKIQ-PGVGYSADAANHIYH-LI 422
LL + ++ + + + II +L H E ++ ++++ G+ + N + + L
Sbjct: 245 LLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLC 304
Query: 423 NKGQIDAAYRIV-NTLARSANIN 444
N G+ A R++ N L + N N
Sbjct: 305 NYGRWSDASRLLSNMLEKKINPN 327
Score = 39.7 bits (91), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 89/217 (41%), Gaps = 9/217 (4%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
+I YN L+ + + + ++ +G+ N VTY + +I + Q G+ +
Sbjct: 397 NIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTY------TTIIQGFFQAGDCD 450
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A + + M P ++ L++G + +A I + ++ +E + Y ++
Sbjct: 451 SAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMI 510
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE 261
G K G + SL + ++ + ++ ++ L + A+ + M + G
Sbjct: 511 EGMCKAGKVGEAWDLFCSLSIKPDV-VTYNTMISGL--CSKRLLQEADDLFRKMKEDGTL 567
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD 298
P++ TY L+ + D + L+ + SS GD
Sbjct: 568 PNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGD 604
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 136/348 (39%), Gaps = 40/348 (11%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
+ L+R + + L ++ G+EP+ + L+ C++G+++ A+K
Sbjct: 170 FVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVF------GCLLDALCKNGSVKEASK 223
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+ E MR+K FP + F +L+YG + + A+ +L M +AGLEP +T L+ GYA
Sbjct: 224 VFEDMREK-FPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYA 282
Query: 206 KHGDMDSIKTKIPSLKPQ--SELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS 263
G M + ++ + C++ L L M A + M + G E
Sbjct: 283 HAGKMADAYDLMNDMRKRGFEPNVNCYTV-LIQALCRTEKRMDEAMRVFVEMERYGCEAD 341
Query: 264 AQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVC 323
TYT L+ G+ K G +D +L V + + + E +E
Sbjct: 342 IVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEE------ 395
Query: 324 FVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLD 383
C +E M + G P Y ++ K G++ RL +
Sbjct: 396 ----CLELIEK--MKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNE------------ 437
Query: 384 IIHALAVSGHGEYIDEIISKIQ--PGVGYSADAANHIYHLINKGQIDA 429
+ +G +D + I G+ +A NH ++++G A
Sbjct: 438 ----MEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSA 481
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 159/380 (41%), Gaps = 40/380 (10%)
Query: 120 TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFP--ISEGVFNALIYGHSQANDMAS 177
+Y+ S ++SK Q G + G ++E MR KT P I +F L+ + AN +
Sbjct: 130 SYEVCKSMVMILSKMRQFGAVWG---LIEEMR-KTNPELIEPELFVVLMRRFASANMVKK 185
Query: 178 AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNL 237
A +L M + GLEP + L+ K+G S+K + E F T+L
Sbjct: 186 AVEVLDEMPKYGLEPDEYVFGCLLDALCKNG---SVKEASKVFEDMREKFPPNLRYFTSL 242
Query: 238 LI--LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRL---LAQSGS 292
L + A+ +L M +AGLEP +T L+ GYA G M L + + G
Sbjct: 243 LYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGF 302
Query: 293 SLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKL 352
Y +I AL + + +DE A+ FV M + G E TYT L
Sbjct: 303 EPNVNCYTVLIQALCRT--EKRMDE--AMRVFVE----------MERYGCEADIVTYTAL 348
Query: 353 MCGYAKHGDMD---SIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQ-PGV 408
+ G+ K G +D S+ + + G Y+ I+ A E E+I K++ G
Sbjct: 349 ISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGC 408
Query: 409 GYSADAANHIYHLINK-GQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVG 467
N + L K G++ A R+ N + NG V F++ T+Q G
Sbjct: 409 HPDLLIYNVVIRLACKLGEVKEAVRLWNEM----EANGLSPGVDTFVIMINGFTSQ---G 461
Query: 468 YSADAANHIYHLINKGQIDA 487
+ +A NH ++++G A
Sbjct: 462 FLIEACNHFKEMVSRGIFSA 481
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/378 (22%), Positives = 161/378 (42%), Gaps = 43/378 (11%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
YN ++ +H + ++E++GI PN VTY S LIS C G A++
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY------SSLISCLCNYGRWSDASR 312
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+L M ++ F+ALI + + AE + M + ++PS TY+ L+ G+
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 372
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLT-NLLILVSSDMASAE---GILTMMSQAGLE 261
H +D K + + CF +T N LI E + MSQ GL
Sbjct: 373 MHDRLDEAKQMFEFMVSKH----CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLV 428
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGH------- 311
+ TY L+ G + GD D + + + S V + Y ++ L +G
Sbjct: 429 GNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVV 488
Query: 312 GEYI--DEVSAIVCFVNICFH-----------WLEGPMMSQAGLEPSAQTYTKLMCGYAK 358
EY+ ++ + NI W +S G++P Y ++ G+ +
Sbjct: 489 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 548
Query: 359 HG---DMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA 415
G + D++ + + ++G+ +G Y +I A G E E+I +++ G++ DA+
Sbjct: 549 KGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR-SCGFAGDAS 607
Query: 416 N--HIYHLINKGQIDAAY 431
+ ++++ G++D ++
Sbjct: 608 TIGLVTNMLHDGRLDKSF 625
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 116/303 (38%), Gaps = 38/303 (12%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L +P + Y+ L+ + L K+ G EPN VT S L++ YC
Sbjct: 110 LGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTL------SSLLNGYCH 163
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
I A +++ M + + FN LI+G N + A ++ M G +P T
Sbjct: 164 SKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVT 223
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSEL---FLCFSFQLTNLLILVSSDMASAEGILT 253
Y ++ G K GD D + + + Q +L L ++ + L M A +
Sbjct: 224 YGVVVNGLCKRGDTD-LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKY--KHMDDALNLFK 280
Query: 254 MMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSG 310
M G+ P+ TY+ L+ +G RLL+ +N D + +I A G
Sbjct: 281 EMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG 340
Query: 311 H----GEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIR 366
+ DE M + ++PS TY+ L+ G+ H +D +
Sbjct: 341 KLVEAEKLYDE-------------------MVKRSIDPSIVTYSSLINGFCMHDRLDEAK 381
Query: 367 RLL 369
++
Sbjct: 382 QMF 384
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 91/222 (40%), Gaps = 16/222 (7%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+ YN L++ + + + ++ +G+ N VTY LI Q G+ +
Sbjct: 395 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQG------LFQAGDCD 448
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A +I + M P + +N L+ G + + A + + ++ +EP+ TY ++
Sbjct: 449 MAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMI 508
Query: 202 CGYAKHGDMDS-----IKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
G K G ++ + +KP + ++ ++ S + A+ + M
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLKGVKPD---VVAYNTMISGFCRKGSKE--EADALFKEMK 563
Query: 257 QAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD 298
+ G P++ Y L+ + GD ++ L+ + S GD
Sbjct: 564 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGD 605
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 101/268 (37%), Gaps = 28/268 (10%)
Query: 121 YQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEG 180
+ +I SKL+S + + + E M++ P + ++ LI + + + A
Sbjct: 78 FPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALA 137
Query: 181 ILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSL-----KPQSELFLCFSFQLT 235
+L M + G EP+ T + L+ GY + + + +P + F
Sbjct: 138 VLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTF-------- 189
Query: 236 NLLI---LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292
N LI + + + A ++ M G +P TY ++ G K GD D LL +
Sbjct: 190 NTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ 249
Query: 293 SLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKL 352
+ L I+ + G +Y A+ F M G+ P+ TY+ L
Sbjct: 250 GKLEPGVL--IYNTIIDGLCKYKHMDDALNLFKE----------METKGIRPNVVTYSSL 297
Query: 353 MCGYAKHGDMDSIRRLLAQNGSSLVNGD 380
+ +G RLL+ +N D
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINPD 325
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 156/367 (42%), Gaps = 54/367 (14%)
Query: 105 FLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164
FL++++ +G+ P+ VTY + LIS Y G +E A +++ M K F +N
Sbjct: 257 FLSQVQEKGVYPDIVTY------NTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNT 310
Query: 165 LIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS 224
+I G + A+ + M ++GL P + TY L+ K GD+ + ++ +
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRD 370
Query: 225 EL--FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD- 281
+ +CFS ++ L S ++ A + +AGL P YT L+ GY + G +
Sbjct: 371 VVPDLVCFSSMMS--LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISV 428
Query: 282 --SVRRLLAQSGSSLVNGDYLDIIHALA--------------VSGHGEYIDEVSAIVCFV 325
++R + Q G ++ Y I+H L ++ + D + +
Sbjct: 429 AMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILID 488
Query: 326 NIC-FHWLEGPM-----MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNG 379
C L+ M M + + TY L+ G+ K GD+D+ + + A S +
Sbjct: 489 GHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILP 548
Query: 380 ---DYLDIIHALAVSGH----GEYIDEIISK-IQPGV-------------GYSADAANHI 418
Y +++AL GH DE+ISK I+P V G ++D + +
Sbjct: 549 TPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFL 608
Query: 419 YHLINKG 425
+I++G
Sbjct: 609 EKMISEG 615
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 32/289 (11%)
Query: 130 LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG 189
LI Y Q + A + +R K F +S NALI + + A G+ +S++G
Sbjct: 171 LIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSG 230
Query: 190 LEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSD---MA 246
+ + T ++ K G M+ + T + ++ + ++ N LI S M
Sbjct: 231 VGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTY---NTLISAYSSKGLME 287
Query: 247 SAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ---SGSSLVNGDYL--- 300
A ++ M G P TY ++ G KHG + + + A+ SG S + Y
Sbjct: 288 EAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 347
Query: 301 -------DIIHALAVSGHGEYIDEVSAIVCFVNICFHW-----LEGPMM-----SQAGLE 343
D++ V D V +VCF ++ + L+ +M +AGL
Sbjct: 348 MEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLI 407
Query: 344 PSAQTYTKLMCGYAKHGDMD---SIRRLLAQNGSSLVNGDYLDIIHALA 389
P YT L+ GY + G + ++R + Q G ++ Y I+H L
Sbjct: 408 PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLC 456
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 87 NALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKI 146
N++++ Y + + FL K+ S+G P+ ++Y LI + ++ N+ A +
Sbjct: 589 NSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYG------FVREENMSKAFGL 642
Query: 147 LEFMRDKTFPISEGVF--NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGY 204
++ M ++ + VF N++++G + N M AE +L M + G+ P TYT ++ G+
Sbjct: 643 VKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGF 702
Query: 205 AKHGDM 210
++
Sbjct: 703 VSQDNL 708
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/255 (18%), Positives = 97/255 (38%), Gaps = 43/255 (16%)
Query: 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNI 140
+D+ YN +L + ++ + + P+ T + LI +C+ GN+
Sbjct: 443 MDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTL------TILIDGHCKLGNL 496
Query: 141 EGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTY--- 197
+ A ++ + M++K + +N L+ G + D+ +A+ I M + P+ +Y
Sbjct: 497 QNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSIL 556
Query: 198 ---------------------------TKLMC-----GYAKHGDMDSIKTKIPSLKPQSE 225
T ++C GY + G+ ++ + + +
Sbjct: 557 VNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGF 616
Query: 226 LFLCFSFQLTNLLILVSSDMASAEGILTMM--SQAGLEPSAQTYTKLMCGYAKHGDMDSV 283
+ C S+ + +M+ A G++ M Q GL P TY ++ G+ + M
Sbjct: 617 VPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEA 676
Query: 284 RRLLAQSGSSLVNGD 298
+L + VN D
Sbjct: 677 EVVLRKMIERGVNPD 691
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 107/297 (36%), Gaps = 20/297 (6%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
Y L++ Y + ++ QG + VTY ++ C+ + A K
Sbjct: 413 YTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHG------LCKRKMLGEADK 466
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+ M ++ LI GH + ++ +A + M + + TY L+ G+
Sbjct: 467 LFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFG 526
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQ 265
K GD+D+ K + + L S+ + + +A A + M ++P+
Sbjct: 527 KVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVM 586
Query: 266 TYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFV 325
++ GY + G+ A G S + +I V Y + V
Sbjct: 587 ICNSMIKGYCRSGN--------ASDGESFLE----KMISEGFVPDCISYNTLIYGFVREE 634
Query: 326 NI--CFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD 380
N+ F ++ Q GL P TY ++ G+ + M +L + VN D
Sbjct: 635 NMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPD 691
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 56/237 (23%)
Query: 130 LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG 189
L+ +C +G E A I M K + V+N L+ ++++N + EG+ T M G
Sbjct: 350 LVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKG 409
Query: 190 LEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAE 249
L+PSA TY LM YA+ D ++T
Sbjct: 410 LKPSAATYNILMDAYARRMQPDIVET---------------------------------- 435
Query: 250 GILTMMSQAGLEPSAQTYTKLMCGYAKHGDM-----DSVRRLLAQSGSSLVNGDYLDIIH 304
+L M GLEP+ ++YT L+ Y + M D+ R + + G + Y +IH
Sbjct: 436 -LLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLR-MKKVGLKPSSHSYTALIH 493
Query: 305 ALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGD 361
A +VSG E A F +C + G++PS +TYT ++ + + GD
Sbjct: 494 AYSVSGWHE-----KAYASFEEMC----------KEGIKPSVETYTSVLDAFRRSGD 535
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 123/296 (41%), Gaps = 44/296 (14%)
Query: 108 KLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIY 167
++E +GI N + Y + L+ Y + +IE + MRDK S +N L+
Sbjct: 369 EMEKKGIRSNTIVY------NTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMD 422
Query: 168 GHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS------IKTKIPSLK 221
+++ E +L M GLEP+ ++YT L+ Y + M ++ K LK
Sbjct: 423 AYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLK 482
Query: 222 PQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD-- 279
P S + + VS A M + G++PS +TYT ++ + + GD
Sbjct: 483 PSSHSYTALIHAYS-----VSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTG 537
Query: 280 --MDSVRRLLAQS--GSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGP 335
M+ + +L + G+ + LD + G YI+ + F
Sbjct: 538 KLMEIWKLMLREKIKGTRITYNTLLD-----GFAKQGLYIEARDVVSEF----------- 581
Query: 336 MMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD---YLDIIHAL 388
S+ GL+PS TY LM YA+ G + +LL + + + D Y +I+A
Sbjct: 582 --SKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAF 635
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 110/280 (39%), Gaps = 43/280 (15%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLIS---NSKLISKYCQDGNIEG 142
YN L+ Y L ++E G+EPN +Y LIS +K +S D
Sbjct: 417 YNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADA---- 472
Query: 143 ATKILEFMRDKTFPI--SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL 200
F+R K + S + ALI+ +S + A M + G++PS +TYT +
Sbjct: 473 ------FLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSV 526
Query: 201 MCGYAKHGDMDSI--------KTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGIL 252
+ + + GD + + KI + L F L I A ++
Sbjct: 527 LDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLD-GFAKQGLYI-------EARDVV 578
Query: 253 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHG 312
+ S+ GL+PS TY LM YA+ G + +LL + + + D +
Sbjct: 579 SEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSIT----------- 627
Query: 313 EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKL 352
Y + A V + + MM ++G P ++Y KL
Sbjct: 628 -YSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKL 666
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 115/564 (20%), Positives = 208/564 (36%), Gaps = 135/564 (23%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
+ L+R Y T + L +ES G+ PN+V Y ++S+ +C++G + + K
Sbjct: 185 FGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSS------FCREGRNDDSEK 238
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMS---QAGL-EPSAQTYTKLM 201
++E MR++ FN+ I + + A I + M GL P++ TY ++
Sbjct: 239 MVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLML 298
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE 261
G+ K G ++ KT S++ +L S+ + ++ AE +L M+ G+
Sbjct: 299 KGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIG 358
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAI 321
PS +Y LM G K G + + ++
Sbjct: 359 PSIYSYNILMDGLCKLGMLSDAKTIVG--------------------------------- 385
Query: 322 VCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ--NGSSLVNG 379
+M + G+ P A TY L+ GY G +D+ + LL + + L N
Sbjct: 386 --------------LMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNA 431
Query: 380 DYLDII-HALAVSGHGEYIDEIISKI-QPGVGYSADAANHIYH-LINKGQIDAAYRIVNT 436
+I+ H+L G +E++ K+ + G G N I L G++D A IV
Sbjct: 432 YTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKG 491
Query: 437 L-----ARSANINGEQLPVGGFLVRHMVKTN-QPGV-------------GYSADAAN--- 474
+ A N+ + G + +++ N P + G A+A N
Sbjct: 492 MRVHGSAALGNLGNSYI---GLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFA 548
Query: 475 ----------------HIYHLINKGQIDAAYRIV---------------NTLARSANING 503
I+H +G+I +A+R++ N+L I
Sbjct: 549 EMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKN 608
Query: 504 EQLPVGGFLVRHMVKTNQP-----------------IDKVLAVCHRLTDENLHPRAFNLA 546
+ + G + K P ++ + + +N+ P F+
Sbjct: 609 QIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFK 668
Query: 547 VLIKAHVLKEDYTGAVETFEYCVN 570
LI+A D+ A E FE V+
Sbjct: 669 YLIEAFCKVPDFDMAQEVFETAVS 692
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+ Y+ LL + A++ + ++P+ V Y I + +C+ G I
Sbjct: 523 DLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHH------FCKQGKIS 576
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198
A ++L+ M K S +N+LI G N + G++ M + G+ P+ TY
Sbjct: 577 SAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYN 633
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 135/303 (44%), Gaps = 44/303 (14%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLA-KLESQGIEPNRVTYQQLISNSKLISKYCQDGNI 140
D++ +N L+ V L E +F + +L K+E G P VTY ++ YC+ G
Sbjct: 192 DVATFNILINV-LCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLH------WYCKKGRF 244
Query: 141 EGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL 200
+ A ++L+ M+ K +N LI+ ++N +A +L M + + P+ TY L
Sbjct: 245 KAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTL 304
Query: 201 MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLT------NLLI---LVSSDMASAEGI 251
+ G++ G K I S + +E+ SF L+ N LI + + A +
Sbjct: 305 INGFSNEG-----KVLIAS-QLLNEML---SFGLSPNHVTFNALIDGHISEGNFKEALKM 355
Query: 252 LTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRL---LAQSGSSLVNGDYLDIIHALAV 308
MM GL PS +Y L+ G K+ + D R + ++G + Y +I L
Sbjct: 356 FYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415
Query: 309 SGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRL 368
+G ++DE ++ MS+ G++P TY+ L+ G+ K G + + +
Sbjct: 416 NG---FLDEAVVLL------------NEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEI 460
Query: 369 LAQ 371
+ +
Sbjct: 461 VCR 463
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 12/220 (5%)
Query: 73 HTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLIS 132
H V D+ YN L+ + L + + I PN VTY LI+
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLING----- 307
Query: 133 KYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP 192
+ +G + A+++L M + FNALI GH + A + MM GL P
Sbjct: 308 -FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTP 366
Query: 193 SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFS-FQLTNLL--ILVSSDMASAE 249
S +Y L+ G K+ + D + +K +C T ++ + + + A
Sbjct: 367 SEVSYGVLLDGLCKNAEFDLARGFYMRMKRNG---VCVGRITYTGMIDGLCKNGFLDEAV 423
Query: 250 GILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289
+L MS+ G++P TY+ L+ G+ K G + + ++ +
Sbjct: 424 VLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCR 463
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 121/304 (39%), Gaps = 30/304 (9%)
Query: 80 PLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGN 139
P ++S Y LL N F +++ G+ R+TY + +I C++G
Sbjct: 366 PSEVS-YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITY------TGMIDGLCKNGF 418
Query: 140 IEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTK 199
++ A +L M ++ALI G + +A+ I+ + + GL P+ Y+
Sbjct: 419 LDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYST 478
Query: 200 LMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAG 259
L+ + G + ++ + F+F + + + +A AE + M+ G
Sbjct: 479 LIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDG 538
Query: 260 LEPSAQTYTKLMCGYAKHGD---MDSVRRLLAQSGSSLVNGDYLDIIHALAVSGH----G 312
+ P+ ++ L+ GY G+ SV + + G Y ++ L GH
Sbjct: 539 ILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAE 598
Query: 313 EYIDEVSAIVCFVN-ICFHWLEGPM---------------MSQAGLEPSAQTYTKLMCGY 356
+++ + A+ V+ + ++ L M M Q + P + TYT L+ G
Sbjct: 599 KFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGL 658
Query: 357 AKHG 360
+ G
Sbjct: 659 CRKG 662
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 15/205 (7%)
Query: 112 QGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ 171
+G+E +R T+ LIS K C +G I A +++ M + + +A++ ++
Sbjct: 818 RGVEVDRYTFNMLIS------KCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 871
Query: 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFS 231
+ + +L MS+ G+ P ++ Y L+ G + GD IKT + +C
Sbjct: 872 NHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGD---IKTAFVVKEEMIAHKICPP 928
Query: 232 FQLTNLLILVSSDMASAEG---ILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD---SVRR 285
+ ++ + A+ +L M + L P+ ++T LM K+G++ +R
Sbjct: 929 NVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRV 988
Query: 286 LLAQSGSSLVNGDYLDIIHALAVSG 310
+++ G L Y +I L G
Sbjct: 989 VMSNCGLKLDLVSYNVLITGLCAKG 1013
Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 18/226 (7%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDF-LAKLESQGIEPNRVTYQQLISNSKLISKYC 135
L + LD +A++ V L+ H F + L ++ QGI P Y LI+ C
Sbjct: 853 LGISLDKDTCDAMVSV-LNRNHRFQESRMVLHEMSKQGISPESRKYIGLING------LC 905
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
+ G+I+ A + E M +A++ ++ A +L M + L P+
Sbjct: 906 RVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIA 965
Query: 196 TYTKLMCGYAKHGD-MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTM 254
++T LM K+G+ +++++ ++ +L L S+ + + DMA A +
Sbjct: 966 SFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDL-VSYNVLITGLCAKGDMALAFELYEE 1024
Query: 255 MSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYL 300
M G +A TY L+ G + R A SG+ ++ D L
Sbjct: 1025 MKGDGFLANATTYKALIRGL--------LARETAFSGADIILKDLL 1062
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 114/321 (35%), Gaps = 56/321 (17%)
Query: 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISN---------SKLI 131
+D YN LL + + ++ + I P+ TY LIS + L
Sbjct: 611 VDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILF 670
Query: 132 SKYCQ-DGNIEGATKILEFMRDKTFPISE---GVF-----------------NALIYGHS 170
+K + GN+ + D F + G++ NA+I G+S
Sbjct: 671 AKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYS 730
Query: 171 QANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL---F 227
+ + +L M P+ TY L+ GY+K D+ + S+ L
Sbjct: 731 RMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKL 790
Query: 228 LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287
C S L I S+ + IL G+E T+ L+ +G+++
Sbjct: 791 TCHSLVLG---ICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWA---- 843
Query: 288 AQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPM----MSQAGLE 343
D++ + G D A+V +N + E M MS+ G+
Sbjct: 844 ------------FDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGIS 891
Query: 344 PSAQTYTKLMCGYAKHGDMDS 364
P ++ Y L+ G + GD+ +
Sbjct: 892 PESRKYIGLINGLCRVGDIKT 912
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 120/288 (41%), Gaps = 32/288 (11%)
Query: 113 GIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA 172
G EP+ + L+ C+ G+++ A K+ E MR + FP++ F +L+YG +
Sbjct: 213 GFEPDEYVF------GCLLDALCKHGSVKDAAKLFEDMRMR-FPVNLRYFTSLLYGWCRV 265
Query: 173 NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM----DSIK-TKIPSLKPQSELF 227
M A+ +L M++AG EP YT L+ GYA G M D ++ + +P +
Sbjct: 266 GKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNAN-- 323
Query: 228 LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287
C++ + L + M A + M + E TYT L+ G+ K G +D +L
Sbjct: 324 -CYTVLIQALCKV--DRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVL 380
Query: 288 AQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQ 347
+ L +H + E +E C +E M Q P
Sbjct: 381 DDMIKKGLMPSELTYMHIMVAHEKKESFEE----------CLELMEK--MRQIEYHPDIG 428
Query: 348 TYTKLMCGYAKHGDMDSIRRL---LAQNGSSLVNGDYLDIIHALAVSG 392
Y ++ K G++ RL + +NG S ++ +I+ LA G
Sbjct: 429 IYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQG 476
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 147/378 (38%), Gaps = 57/378 (15%)
Query: 126 SNSKLISKYCQDGNIEGATKILEFMRDKTFPISE-GVFNALIYGHSQANDMASAEGILTM 184
S K++SK Q G + G ++E MR + + E +F L+ + A+ + A +L
Sbjct: 152 SMVKILSKMRQFGAVWG---LIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDE 208
Query: 185 MSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQL-TNLLILVS- 242
M + G EP + L+ KHG S+K ++LF + NL S
Sbjct: 209 MPKFGFEPDEYVFGCLLDALCKHG----------SVKDAAKLFEDMRMRFPVNLRYFTSL 258
Query: 243 -------SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL---AQSGS 292
M A+ +L M++AG EP YT L+ GYA G M LL + G
Sbjct: 259 LYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGF 318
Query: 293 SLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKL 352
Y +I AL E A+ FV M + E TYT L
Sbjct: 319 EPNANCYTVLIQALCKVDRME-----EAMKVFVE----------MERYECEADVVTYTAL 363
Query: 353 MCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQP--GVGY 410
+ G+ K G +D +L + L +H + E +E + ++ + Y
Sbjct: 364 VSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEY 423
Query: 411 SADAANHIYHLINK-----GQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPG 465
D IY+++ + G++ A R+ N + NG V F++ +
Sbjct: 424 HPDIG--IYNVVIRLACKLGEVKEAVRLWNEMEE----NGLSPGVDTFVI---MINGLAS 474
Query: 466 VGYSADAANHIYHLINKG 483
G +A++H ++ +G
Sbjct: 475 QGCLLEASDHFKEMVTRG 492
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 12/210 (5%)
Query: 72 VHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLI 131
V E DI Y LL Y + D L + +G EPN Y + LI
Sbjct: 276 VQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCY------TVLI 329
Query: 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLE 191
C+ +E A K+ M + AL+ G + + +L M + GL
Sbjct: 330 QALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLM 389
Query: 192 PSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGI 251
PS TY +M + K +S + + ++ ++ + N++I ++ + +
Sbjct: 390 PSELTYMHIMVAHEKK---ESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEA 446
Query: 252 LTM---MSQAGLEPSAQTYTKLMCGYAKHG 278
+ + M + GL P T+ ++ G A G
Sbjct: 447 VRLWNEMEENGLSPGVDTFVIMINGLASQG 476
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 66/341 (19%)
Query: 35 LGAFLVLLVLLFVYLNSKWCSEPSLGPGNLP-CEDPFSVHTGELDVPLDISHYNALLRVY 93
L A L V +F L +K+C E GN+ + F T P +S +N L+ Y
Sbjct: 232 LDAGFPLNVYVFNILMNKFCKE-----GNISDAQKVFDEITKRSLQPTVVS-FNTLINGY 285
Query: 94 LDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK 153
+ ++E P+ TY S LI+ C++ ++GA + + M +
Sbjct: 286 CKVGNLDEGFRLKHQMEKSRTRPDVFTY------SALINALCKENKMDGAHGLFDEMCKR 339
Query: 154 TFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSI 213
++ +F LI+GHS+ ++ + M GL+P Y L+ G+ K+G
Sbjct: 340 GLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNG----- 394
Query: 214 KTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCG 273
D+ +A I+ M + GL P TYT L+ G
Sbjct: 395 ------------------------------DLVAARNIVDGMIRRGLRPDKITYTTLIDG 424
Query: 274 YAKHGDMDS---VRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFH 330
+ + GD+++ +R+ + Q+G L + ++ + G ID A+
Sbjct: 425 FCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMC--KEGRVIDAERAL--------- 473
Query: 331 WLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
M +AG++P TYT +M + K GD + +LL +
Sbjct: 474 ----REMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKE 510
Score = 73.2 bits (178), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
DI YN L+ + N + + + + +G+ P+++TY + LI +C+ G++E
Sbjct: 379 DIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITY------TTLIDGFCRGGDVE 432
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A +I + M + F+AL+ G + + AE L M +AG++P TYT +M
Sbjct: 433 TALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMM 492
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSEL--FLCFSFQLTNLLILVSSDMASAEGILTMMSQAG 259
+ K GD + + ++ + + ++ L L L M +A+ +L M G
Sbjct: 493 DAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKL--GQMKNADMLLDAMLNIG 550
Query: 260 LEPSAQTYTKLMCGYAKHGD 279
+ P TY L+ G+ +H +
Sbjct: 551 VVPDDITYNTLLEGHHRHAN 570
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 165/385 (42%), Gaps = 43/385 (11%)
Query: 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDG 138
+ D+ YN ++ +H + +++++GI P+ TY S LIS C G
Sbjct: 254 IEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTY------SSLISCLCNYG 307
Query: 139 NIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198
A+++L M ++ + F+ALI + + AE + M + ++P TY+
Sbjct: 308 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 367
Query: 199 KLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLT--NLLILVSSDMASAEG--ILTM 254
L+ G+ H +D K + + CF +T L+ EG +
Sbjct: 368 SLINGFCMHDRLDEAKHMFELMISKD----CFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423
Query: 255 MSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLD---IIHALAVSGH 311
MSQ GL + TYT L+ G+ + D D+ + + Q S V+ + L ++ L +G
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGK 483
Query: 312 -------GEYI-------DEVSAIVCFVNICFH------WLEGPMMSQAGLEPSAQTYTK 351
EY+ D + + +C W +S G+ P+ Y
Sbjct: 484 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNT 543
Query: 352 LMCGYAKHG---DMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGV 408
++ G+ + G + DS+ + + ++G +G Y +I A G E E+I +++
Sbjct: 544 MISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMR-SC 602
Query: 409 GYSADAAN--HIYHLINKGQIDAAY 431
G++ DA+ + ++++ G++D ++
Sbjct: 603 GFAGDASTIGLVTNMLHDGRLDKSF 627
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 36/309 (11%)
Query: 72 VHTGELDVPLDISH----YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISN 127
+ GE L ISH Y+ + + LAK+ G EP+ VT
Sbjct: 103 ISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTL------ 156
Query: 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ 187
S L++ YC I A +++ M + + F LI+G N + A ++ M Q
Sbjct: 157 SSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ 216
Query: 188 AGLEPSAQTYTKLMCGYAKHGDMD---SIKTKIPSLKPQSELFLCFSFQLTNLLI---LV 241
G +P TY ++ G K GD+D S+ K+ K ++++ + N +I
Sbjct: 217 RGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVV------IYNTIIDGLCK 270
Query: 242 SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLD 301
M A + T M G+ P TY+ L+ +G RLL+ +N + +
Sbjct: 271 YKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVT 330
Query: 302 IIHAL-AVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG 360
+ A G+ ++ L M+ ++ ++P TY+ L+ G+ H
Sbjct: 331 FSALIDAFVKEGKLVEA------------EKLYDEMIKRS-IDPDIFTYSSLINGFCMHD 377
Query: 361 DMDSIRRLL 369
+D + +
Sbjct: 378 RLDEAKHMF 386
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 113/275 (41%), Gaps = 40/275 (14%)
Query: 108 KLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIY 167
++ +G +P+ VTY +++ C+ G+I+ A +L+ M ++N +I
Sbjct: 213 QMVQRGCQPDLVTYGTVVNG------LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIID 266
Query: 168 GHSQANDMASAEGILTMMSQAGLEPSAQTYTKL---MCGYAKHGDM-----DSIKTKI-P 218
G + M A + T M G+ P TY+ L +C Y + D D I+ KI P
Sbjct: 267 GLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINP 326
Query: 219 SLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG 278
++ S L F + + AE + M + ++P TY+ L+ G+ H
Sbjct: 327 NVVTFSALIDAF---------VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 377
Query: 279 DMDSVRRLLAQSGSSLVNGDYLD--IIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPM 336
+D + + +++ D + ++ + G + + F
Sbjct: 378 RLDEAKHMFEL----MISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFRE---------- 423
Query: 337 MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
MSQ GL + TYT L+ G+ + D D+ + + Q
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 458
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 128/331 (38%), Gaps = 50/331 (15%)
Query: 121 YQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIY--GHSQANDMASA 178
+ ++ +KL+S + E + E M +T IS ++ I+ + + ++ A
Sbjct: 80 FPSIVEFNKLLSAVAKMNKFELVISLGEQM--QTLGISHDLYTYSIFINCFCRRSQLSLA 137
Query: 179 EGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSL-----KPQSELFLCFSFQ 233
+L M + G EP T + L+ GY + + + KP +F
Sbjct: 138 LAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPD-------TFT 190
Query: 234 LTNLL--ILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291
T L+ + + + + A ++ M Q G +P TY ++ G K GD+D LL +
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKME 250
Query: 292 SSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTK 351
+ D +I+ + G +Y A+ F M G+ P TY+
Sbjct: 251 KGKIEADV--VIYNTIIDGLCKYKHMDDALNLFTE----------MDNKGIRPDVFTYSS 298
Query: 352 LMCGYAKHGDMDSIRRLLAQNGSSLVNGD---YLDIIHALAVSGH----GEYIDEIISK- 403
L+ +G RLL+ +N + + +I A G + DE+I +
Sbjct: 299 LISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 358
Query: 404 IQPGV-GYSA-----------DAANHIYHLI 422
I P + YS+ D A H++ L+
Sbjct: 359 IDPDIFTYSSLINGFCMHDRLDEAKHMFELM 389
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 137/327 (41%), Gaps = 53/327 (16%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
E V ++ YN L+R + + K+E++G PN VTY LI YC
Sbjct: 198 ESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDG------YC 251
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
+ I+ K+L M K + +N +I G + M +LT M++ G
Sbjct: 252 KLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEV 311
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSS---------DMA 246
TY L+ GY K G+ +L +E+ LT +I +S +M
Sbjct: 312 TYNTLIKGYCKEGNFHQ------ALVMHAEM---LRHGLTPSVITYTSLIHSMCKAGNMN 362
Query: 247 SAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ---SGSSLVNGDYLDII 303
A L M GL P+ +TYT L+ G+++ G M+ R+L + +G S Y +I
Sbjct: 363 RAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALI 422
Query: 304 HALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMD 363
+ V+G E D ++ + M + GL P +Y+ ++ G+ + D+D
Sbjct: 423 NGHCVTGKME--DAIAVL-------------EDMKEKGLSPDVVSYSTVLSGFCRSYDVD 467
Query: 364 S---IRRLLAQNG--------SSLVNG 379
++R + + G SSL+ G
Sbjct: 468 EALRVKREMVEKGIKPDTITYSSLIQG 494
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 111/288 (38%), Gaps = 53/288 (18%)
Query: 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNI 140
LD YN L++ Y + A++ G+ P+ +TY + LI C+ GN+
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITY------TSLIHSMCKAGNM 361
Query: 141 EGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL 200
A + L+ MR + +E + L+ G SQ M A +L M+ G PS TY L
Sbjct: 362 NRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNAL 421
Query: 201 MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGL 260
+ G+ V+ M A +L M + GL
Sbjct: 422 INGHC-----------------------------------VTGKMEDAIAVLEDMKEKGL 446
Query: 261 EPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSA 320
P +Y+ ++ G+ + D+D R+ + + D I ++ + G E A
Sbjct: 447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPD--TITYSSLIQGFCEQRRTKEA 504
Query: 321 IVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRL 368
C + E M + GL P TYT L+ Y GD++ +L
Sbjct: 505 -------CDLYEE---MLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 122/295 (41%), Gaps = 32/295 (10%)
Query: 110 ESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGH 169
++ G P ++Y ++ ++ + SK NI A + + M + + +N LI G
Sbjct: 161 QAHGFMPGVLSYNAVL-DATIRSK----RNISFAENVFKEMLESQVSPNVFTYNILIRGF 215
Query: 170 SQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLC 229
A ++ A + M G P+ TY L+ GY K +D + S+ +
Sbjct: 216 CFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNL 275
Query: 230 FSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289
S+ + + M +LT M++ G TY L+ GY K G+ + L
Sbjct: 276 ISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNF---HQALVM 332
Query: 290 SGSSLVNG------DYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLE 343
L +G Y +IH++ +G+ +N +L+ M GL
Sbjct: 333 HAEMLRHGLTPSVITYTSLIHSMCKAGN-------------MNRAMEFLD--QMRVRGLC 377
Query: 344 PSAQTYTKLMCGYAKHGDMDSIRRLLAQ---NGSSLVNGDYLDIIHALAVSGHGE 395
P+ +TYT L+ G+++ G M+ R+L + NG S Y +I+ V+G E
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 9/154 (5%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSK---------LIS 132
D+ Y+ L+ T L KL + P+ VTY LI N LI
Sbjct: 554 DVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIK 613
Query: 133 KYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP 192
+C G + A ++ E M K +N +I+GH +A D+ A + M ++G
Sbjct: 614 GFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLL 673
Query: 193 SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL 226
T L+ K G ++ + + I + EL
Sbjct: 674 HTVTVIALVKALHKEGKVNELNSVIVHVLRSCEL 707
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 114/278 (41%), Gaps = 39/278 (14%)
Query: 112 QGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ 171
+GI+P+ +TY S LI +C+ + A + E M P E + ALI +
Sbjct: 479 KGIKPDTITY------SSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCM 532
Query: 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKT---------KIPS-LK 221
D+ A + M + G+ P TY+ L+ G K K +PS +
Sbjct: 533 EGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVT 592
Query: 222 PQSELFLCFSFQLTNLLILV-----SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 276
+ + C + + +++ L+ M A+ + M +P Y ++ G+ +
Sbjct: 593 YHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCR 652
Query: 277 HGDMDSVRRL---LAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLE 333
GD+ L + +SG L + ++ AL G ++E+++++ H L
Sbjct: 653 AGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGK---VNELNSVI------VHVLR 703
Query: 334 GPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
+S+A A+ ++ + G+MD + +LA+
Sbjct: 704 SCELSEA---EQAKVLVEI---NHREGNMDVVLDVLAE 735
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 164/391 (41%), Gaps = 54/391 (13%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
Y L++ D + ++ +G +PN TY + LI C+DG IE A
Sbjct: 304 YTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTY------TVLIDGLCRDGKIEEANG 357
Query: 146 ILEFM-RDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGY 204
+ M +D+ FP S +NALI G+ + + A +LT+M + +P+ +T+ +LM G
Sbjct: 358 VCRKMVKDRIFP-SVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416
Query: 205 AKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI---LVSSDMASAEGILTMMSQAGLE 261
+ G + LK + L N+LI M +A +L+ M+ +E
Sbjct: 417 CRVG---KPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIE 473
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQ-----------SGSSLVNG--------DYLDI 302
P T+T ++ + K G D L +G++L++G D L I
Sbjct: 474 PDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFI 533
Query: 303 IHALA-----VSGHG-EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGY 356
+ L + H I ++ + C V L +++ GL PS TYT L+ G
Sbjct: 534 LETLVKMRILTTPHSLNVILDMLSKGCKVKEELAML--GKINKLGLVPSVVTYTTLVDGL 591
Query: 357 AKHGDMDS---IRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSAD 413
+ GD+ I L+ +G Y II+ L G E ++++S +Q S
Sbjct: 592 IRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQD----SGV 647
Query: 414 AANHIYH------LINKGQIDAAYRIVNTLA 438
+ NH+ + +N G++D A V +
Sbjct: 648 SPNHVTYTVMVKGYVNNGKLDRALETVRAMV 678
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 103/503 (20%), Positives = 193/503 (38%), Gaps = 51/503 (10%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
Y ++ N +T + F++K+ G I S L+ +C+ N+ A K
Sbjct: 198 YRTIVNALCKNGYTEAAEMFMSKILKIGF-----VLDSHIGTSLLLG-FCRGLNLRDALK 251
Query: 146 ILEFM-RDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGY 204
+ + M ++ T + ++ LI+G + + A G+ M + G +PS +TYT L+
Sbjct: 252 VFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKAL 311
Query: 205 AKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSA 264
G +D + P+ ++ + + + A G+ M + + PS
Sbjct: 312 CDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSV 371
Query: 265 QTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCF 324
TY L+ GY K G + LL ++ A + +E+ +C
Sbjct: 372 ITYNALINGYCKDGRVVPAFELLT-------------VMEKRACKPNVRTFNELMEGLCR 418
Query: 325 VNICF---HWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDY 381
V + H L+ M GL P +Y L+ G + G M++ +LL+ + D
Sbjct: 419 VGKPYKAVHLLK--RMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDC 476
Query: 382 LD---IIHALAVSGHGEYIDEIIS-KIQPGVGYSADAANHIYHLINK-GQIDAAYRIVNT 436
L II+A G + + ++ G+ + + K G+ A I+ T
Sbjct: 477 LTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILET 536
Query: 437 LAR--------SANINGEQLPVGGFLVRHMV---KTNQPGVGYSADAANHIYH-LINKGQ 484
L + S N+ + L G + + K N+ G+ S + LI G
Sbjct: 537 LVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGD 596
Query: 485 IDAAYRIVNTLARSA---NINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPR 541
I ++RI+ + S N+ + + G V + +K+L+ + D + P
Sbjct: 597 ITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRV---EEAEKLLSA---MQDSGVSPN 650
Query: 542 AFNLAVLIKAHVLKEDYTGAVET 564
V++K +V A+ET
Sbjct: 651 HVTYTVMVKGYVNNGKLDRALET 673
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 102/269 (37%), Gaps = 44/269 (16%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
DI YN L+ H + L+ + IEP+ +T+ + +I+ +C+ G +
Sbjct: 440 DIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTF------TAIINAFCKQGKAD 493
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASA-------------------EGIL 182
A+ L M K + E LI G + A IL
Sbjct: 494 VASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVIL 553
Query: 183 TMMSQA----------------GLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL 226
M+S+ GL PS TYT L+ G + GD+ + +K L
Sbjct: 554 DMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCL 613
Query: 227 FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD---SV 283
+ + + + + AE +L+ M +G+ P+ TYT ++ GY +G +D
Sbjct: 614 PNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALET 673
Query: 284 RRLLAQSGSSLVNGDYLDIIHALAVSGHG 312
R + + G L + Y ++ +S G
Sbjct: 674 VRAMVERGYELNDRIYSSLLQGFVLSQKG 702
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 119/290 (41%), Gaps = 26/290 (8%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
Y +++ ++ D LE +G+ PN V Y + LI YC+ G ++ A
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMY------TALIDGYCKAGKVDEAHL 553
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+LE M K + FNALI+G + A + M + GL+P+ T T L+
Sbjct: 554 MLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLL 613
Query: 206 KHGDMDSIKTKIPSL-----KPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGL 260
K GD D ++ + KP + + F + AE ++ M + G+
Sbjct: 614 KDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCR-----EGRLLDAEDMMAKMRENGV 668
Query: 261 EPSAQTYTKLMCGYAKHGDMD---SVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDE 317
P TY+ L+ GY G + V + + +G +L +I L +G+
Sbjct: 669 SPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGS 728
Query: 318 VSAIVCFVNI-----CFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDM 362
+ N+ LE M + + P+A++Y KL+ G + G++
Sbjct: 729 EPELCAMSNMMEFDTVVELLEK--MVEHSVTPNAKSYEKLILGICEVGNL 776
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 107/440 (24%), Positives = 180/440 (40%), Gaps = 66/440 (15%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
+I YN ++ Y + +++K+ G++P+ TY + LI YCQ +++
Sbjct: 217 NIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTY------TSLIMGYCQRKDLD 270
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT--- 198
A K+ M K +E + LI+G A + A + M P+ +TYT
Sbjct: 271 SAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLI 330
Query: 199 KLMCGYAKHGDMDSIKTKIPS--LKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
K +CG + + ++ ++ +KP + L + A +L M
Sbjct: 331 KSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCS-----QCKFEKARELLGQML 385
Query: 257 QAGLEPSAQTYTKLMCGYAKHGDM-DSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYI 315
+ GL P+ TY L+ GY K G + D+V D ++++ + +S +
Sbjct: 386 EKGLMPNVITYNALINGYCKRGMIEDAV--------------DVVELMESRKLSPNTRTY 431
Query: 316 DEVSAIVCFVNICFHWLEGPM--MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLA-QN 372
+E+ C N+ H G + M + + P TY L+ G + G+ DS RLL+ N
Sbjct: 432 NELIKGYCKSNV--HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMN 489
Query: 373 GSSLV--NGDYLDIIHALAVSGHGEYIDEIISKI-QPGVG-----YSADAANHIYHLINK 424
LV Y +I +L S E ++ + Q GV Y+A I
Sbjct: 490 DRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA----LIDGYCKA 545
Query: 425 GQIDAAYRIV----------NTLARSANING----EQLPVGGFLVRHMVKTN-QPGVGYS 469
G++D A+ ++ N+L +A I+G +L L MVK QP V S
Sbjct: 546 GKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTV--S 603
Query: 470 ADAANHIYHLINKGQIDAAY 489
D I+ L+ G D AY
Sbjct: 604 TDTI-LIHRLLKDGDFDHAY 622
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 125/345 (36%), Gaps = 51/345 (14%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISN------------------ 127
YNAL+ Y D + +ES+ + PN TY +LI
Sbjct: 396 YNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLE 455
Query: 128 ----------SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMAS 177
+ LI C+ GN + A ++L M D+ + + ++I ++ +
Sbjct: 456 RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEE 515
Query: 178 AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNL 237
A + + Q G+ P+ YT L+ GY K G +D + + ++ L +F
Sbjct: 516 ACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIH 575
Query: 238 LILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNG 297
+ + A + M + GL+P+ T T L+ K GD D Q SS
Sbjct: 576 GLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKP 635
Query: 298 D---YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMC 354
D Y I G +++ A M + G+ P TY+ L+
Sbjct: 636 DAHTYTTFIQTYCREGRLLDAEDMMA---------------KMRENGVSPDLFTYSSLIK 680
Query: 355 GYAKHGD----MDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGE 395
GY G D ++R + G +L +I L +G+
Sbjct: 681 GYGDLGQTNFAFDVLKR-MRDTGCEPSQHTFLSLIKHLLEMKYGK 724
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 117/299 (39%), Gaps = 49/299 (16%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D Y ++ Y D +AK+ G+ P+ TY S LI Y G
Sbjct: 636 DAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY------SSLIKGYGDLGQTN 689
Query: 142 GATKILEFMRDKTFPISEGVFNALI-------YGHSQAN-----------DMASAEGILT 183
A +L+ MRD S+ F +LI YG + + + + +L
Sbjct: 690 FAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLE 749
Query: 184 MMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF----LCFSFQLTNLLI 239
M + + P+A++Y KL+ G + G++ + K+ ++E L F+ L+
Sbjct: 750 KMVEHSVTPNAKSYEKLILGICEVGNL-RVAEKVFDHMQRNEGISPSELVFNALLSCCCK 808
Query: 240 LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD---SVRRLLAQSGSSLVN 296
L + A+ ++ M G P ++ L+CG K G+ + SV + L Q G
Sbjct: 809 LKKHNEAAK--VVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDE 866
Query: 297 GDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCG 355
+ II + G E E+ + M + G + S+QTY+ L+ G
Sbjct: 867 LAWKIIIDGVGKQGLVEAFYELFNV---------------MEKNGCKFSSQTYSLLIEG 910
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/365 (20%), Positives = 148/365 (40%), Gaps = 55/365 (15%)
Query: 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISN-----------SK 129
LD+ Y +L+ + ++ + K+E G +P +TY +++ +
Sbjct: 206 LDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITS 265
Query: 130 LISKY------------------CQDGNI-EGATKILEFMRDKTFPISEGVFNALIYGHS 170
L+ K C+ G++ + A ++ E M+ F + +NAL+ +
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYG 325
Query: 171 QANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD---SIKTKIPSLKPQSELF 227
+++ A +L M G PS TY L+ YA+ G +D +K ++ + ++
Sbjct: 326 KSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDV- 384
Query: 228 LCFSFQLTNLL--ILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRR 285
F T LL + + SA I M AG +P+ T+ + Y G + +
Sbjct: 385 ----FTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK 440
Query: 286 LLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS 345
+ + ++ D + LAV G EVS + M +AG P
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVF------------KEMKRAGFVPE 488
Query: 346 AQTYTKLMCGYAKHGDMD---SIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIIS 402
+T+ L+ Y++ G + ++ R + G + Y ++ ALA G E +++++
Sbjct: 489 RETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLA 548
Query: 403 KIQPG 407
+++ G
Sbjct: 549 EMEDG 553
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 113/285 (39%), Gaps = 36/285 (12%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D YNALL VY + L ++ G P+ VTY LIS Y +DG ++
Sbjct: 313 DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS------AYARDGMLD 366
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A ++ M +K + L+ G +A + SA I M AG +P+ T+ +
Sbjct: 367 EAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFI 426
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCF----SFQLTNLLILVSSDMASAE--GILTMM 255
Y G + +K E+ +C LL + + +E G+ M
Sbjct: 427 KMYGNRGKFTEM------MKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480
Query: 256 SQAGLEPSAQTYTKLMCGYAKHGDMD---SVRRLLAQSGSSLVNGDYLDIIHALAVSGHG 312
+AG P +T+ L+ Y++ G + +V R + +G + Y ++ ALA G
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540
Query: 313 EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYA 357
E ++V A M +P+ TY L+ YA
Sbjct: 541 EQSEKVLA---------------EMEDGRCKPNELTYCSLLHAYA 570
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 78/179 (43%), Gaps = 6/179 (3%)
Query: 106 LAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165
++L+ +G P+ T ++S Y + + A +L++M+++ F S +N+L
Sbjct: 617 FSELKERGFSPDITTLNSMVS------IYGRRQMVAKANGVLDYMKERGFTPSMATYNSL 670
Query: 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSE 225
+Y HS++ D +E IL + G++P +Y ++ Y ++ M ++
Sbjct: 671 MYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGI 730
Query: 226 LFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284
+ ++ S A G++ M + G P+ TY ++ GY K D +
Sbjct: 731 VPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAK 789
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 115/311 (36%), Gaps = 53/311 (17%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
DI +N LL V+ N + +++ G P R T+ + LIS Y + G+ E
Sbjct: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETF------NTLISAYSRCGSFE 506
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A + M D +N ++ ++ +E +L M +P+ TY L+
Sbjct: 507 QAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLL 566
Query: 202 CGYAKH---GDMDSIKTKIPS--LKPQSELF-----LC--------------------FS 231
YA G M S+ ++ S ++P++ L +C FS
Sbjct: 567 HAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFS 626
Query: 232 FQLTNLLILVS-----SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRL 286
+T L +VS +A A G+L M + G PS TY LM +++ D +
Sbjct: 627 PDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEI 686
Query: 287 LAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSA 346
L + + + D + + + + S I M +G+ P
Sbjct: 687 LREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFS------------EMRNSGIVPDV 734
Query: 347 QTYTKLMCGYA 357
TY + YA
Sbjct: 735 ITYNTFIGSYA 745
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEG 142
++ YN+L+ ++ + + L ++ ++GI+P+ +IS + +I YC++ +
Sbjct: 664 MATYNSLMYMHSRSADFGKSEEILREILAKGIKPD------IISYNTVIYAYCRNTRMRD 717
Query: 143 ATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMC 202
A++I MR+ +N I ++ + A G++ M + G P+ TY ++
Sbjct: 718 ASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVD 777
Query: 203 GYAKHGDMDSIKTKIPSLK 221
GY K D K + L+
Sbjct: 778 GYCKLNRKDEAKLFVEDLR 796
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 29/345 (8%)
Query: 87 NALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKI 146
N +L T T+ L+K+ES+GI PN V+Y ++ +C+ N++ A +
Sbjct: 447 NTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLG------HCRQKNMDLARIV 500
Query: 147 LEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206
+ +K + ++ LI G + +D +A ++ M+ + +E + Y ++ G K
Sbjct: 501 FSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCK 560
Query: 207 HGDMDSIKTKIPSLKPQSELFL-CFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQ 265
G + + ++ + L + C S+ +M SA M G+ P+
Sbjct: 561 VGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVI 620
Query: 266 TYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDI-IHALAVSGHGEYIDEVSAIVCF 324
TYT LM G K+ MD + + + G LDI + + G + + SA F
Sbjct: 621 TYTSLMNGLCKNNRMDQALEMRDEMKNK---GVKLDIPAYGALIDGFCKRSNMESASALF 677
Query: 325 VNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDM----DSIRRLLAQNGSSLVNGD 380
+ + GL PS Y L+ G+ G+M D +++L ++G G
Sbjct: 678 SELL----------EEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKML-KDGLRCDLGT 726
Query: 381 YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKG 425
Y +I L G+ E+ +++Q VG D IY +I G
Sbjct: 727 YTTLIDGLLKDGNLILASELYTEMQ-AVGLVPDEI--IYTVIVNG 768
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 128/325 (39%), Gaps = 53/325 (16%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
Y+ L+ N + + + + S IE N V YQ +I+ C+ G A +
Sbjct: 516 YSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIING------LCKVGQTSKARE 569
Query: 146 ILEFM-RDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGY 204
+L M +K +S +N++I G + +M SA M G+ P+ TYT LM G
Sbjct: 570 LLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGL 629
Query: 205 AKHGDMDS------------IKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGIL 252
K+ MD +K IP+ + F C S+M SA +
Sbjct: 630 CKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGF-C-----------KRSNMESASALF 677
Query: 253 TMMSQAGLEPSAQTYTKLMCGYAKHGDM----DSVRRLLAQSGSSLVNGDYLDIIHALAV 308
+ + + GL PS Y L+ G+ G+M D +++L + G G Y +I L
Sbjct: 678 SELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKML-KDGLRCDLGTYTTLIDGLLK 736
Query: 309 SGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRL 368
G+ E+ M GL P YT ++ G +K G + ++
Sbjct: 737 DGNLILASELYT---------------EMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKM 781
Query: 369 LAQNGSSLVNGDYLDIIHALAVSGH 393
+ + V + L I+ ++GH
Sbjct: 782 FEEMKKNNVTPNVL--IYNAVIAGH 804
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 128/307 (41%), Gaps = 64/307 (20%)
Query: 116 PNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDM 175
P++ TY +I S + GN++ A ++ + M ++ +LI GH + ND+
Sbjct: 302 PSQETYTSVILAS------VKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDL 355
Query: 176 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSI-----KTKIPSLKP-------- 222
SA + M + G P++ T++ L+ + K+G+M+ K ++ L P
Sbjct: 356 VSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTI 415
Query: 223 ---------QSELFLCF--SFQLTNLLILVSSDMAS----------AEGILTMMSQAGLE 261
E F SF+ + V + + S A +L+ M G+
Sbjct: 416 IQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIG 475
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQ-----------SGSSLVNGDYL--DIIHALAV 308
P+ +Y +M G+ + +MD R + + + S L++G + D +AL V
Sbjct: 476 PNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEV 535
Query: 309 SGHGEYID-EVSAIV--CFVN-IC-------FHWLEGPMMSQAGLEPSAQTYTKLMCGYA 357
H + EV+ +V +N +C L M+ + L S +Y ++ G+
Sbjct: 536 VNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFF 595
Query: 358 KHGDMDS 364
K G+MDS
Sbjct: 596 KEGEMDS 602
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/328 (19%), Positives = 121/328 (36%), Gaps = 69/328 (21%)
Query: 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDG 138
+ +++ +L+ + N S K+E +G PN VT+ S LI + ++G
Sbjct: 335 ISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTF------SVLIEWFRKNG 388
Query: 139 NIEGATKILEFMR-------------------------------DKTFPISEG---VFNA 164
+E A + + M D++F V N
Sbjct: 389 EMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNT 448
Query: 165 LIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPS----- 219
++ + A +L+ M G+ P+ +Y +M G+ + +MD + +
Sbjct: 449 ILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKG 508
Query: 220 LKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 279
LKP + +++ + + D +A ++ M+ + +E + Y ++ G K G
Sbjct: 509 LKPNN-----YTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQ 563
Query: 280 MDSVRRLLA----QSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGP 335
R LLA + + Y II G + SA+ + +C +
Sbjct: 564 TSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMD-----SAVAAYEEMCGN----- 613
Query: 336 MMSQAGLEPSAQTYTKLMCGYAKHGDMD 363
G+ P+ TYT LM G K+ MD
Sbjct: 614 -----GISPNVITYTSLMNGLCKNNRMD 636
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDG 138
V LDI Y AL+ + + S + ++L +G+ P++ Y LIS + + G
Sbjct: 650 VKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNL------G 703
Query: 139 NIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198
N+ A + + M G + LI G + ++ A + T M GL P YT
Sbjct: 704 NMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYT 763
Query: 199 KLMCGYAKHG 208
++ G +K G
Sbjct: 764 VIVNGLSKKG 773
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+ Y L+ L + + ++ ++++ G+ P+ + Y + +++ + G
Sbjct: 723 DLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIY------TVIVNGLSKKGQFV 776
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
K+ E M+ + ++NA+I GH + ++ A + M G+ P T+ L+
Sbjct: 777 KVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILV 836
Query: 202 CG 203
G
Sbjct: 837 SG 838
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 115/281 (40%), Gaps = 18/281 (6%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D Y LL + DN S F +++E G P+ VT+ + L+ C+ GN
Sbjct: 327 DRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTF------TILVDALCKAGNFG 380
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A L+ MRD+ + +N LI G + + + A + M G++P+A TY +
Sbjct: 381 EAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFI 440
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE 261
Y K GD S +K + + + + + A+ I + GL
Sbjct: 441 DYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLV 500
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAI 321
P + TY +M Y+K G++D +LL++ + D + + + + +DE
Sbjct: 501 PDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEA--- 557
Query: 322 VCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDM 362
W M + L+P+ TY L+ G K+G +
Sbjct: 558 ---------WKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKI 589
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 116/292 (39%), Gaps = 33/292 (11%)
Query: 105 FLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164
L ++E+ G++PN T+ I +++ + G I A +IL+ M D+ +
Sbjct: 245 LLKEMETLGLKPNVYTFTICI---RVLGR---AGKINEAYEILKRMDDEGCGPDVVTYTV 298
Query: 165 LIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS 224
LI A + A+ + M +P TY L+ ++ + D+DS+K ++
Sbjct: 299 LIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDG 358
Query: 225 ELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284
+ +F + + + + A L +M G+ P+ TY L+CG + +D
Sbjct: 359 HVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDAL 418
Query: 285 RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCF--------------VNICFH 330
L S V I + + +G+ D VSA+ F N +
Sbjct: 419 ELFGNMESLGVKPTAYTYI--VFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLY 476
Query: 331 WLEGPM-----------MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
L + GL P + TY +M Y+K G++D +LL++
Sbjct: 477 SLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSE 528
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 121/295 (41%), Gaps = 48/295 (16%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D++ YN LL Y + + ++ + E N +T+ +IS + GN++
Sbjct: 819 DVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISG------LVKAGNVD 872
Query: 142 GATKIL-EFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL 200
A + + M D+ F + + LI G S++ + A+ + M G P+ Y L
Sbjct: 873 DALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNIL 932
Query: 201 MCGYAKHGDMDS--------IKTKI-PSLKPQSELFLCFSFQLTNLLILVSSDMASAEGI 251
+ G+ K G+ D+ +K + P LK S L C L ++ D EG+
Sbjct: 933 INGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDC-------LCMVGRVD----EGL 981
Query: 252 --LTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSL-VNGD---YLDIIHA 305
+ ++GL P Y ++ G K ++ L + +S + D Y +I
Sbjct: 982 HYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILN 1041
Query: 306 LAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG 360
L ++G ++E I + +AGLEP+ T+ L+ GY+ G
Sbjct: 1042 LGIAGM---VEEAGKIY------------NEIQRAGLEPNVFTFNALIRGYSLSG 1081
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 22/230 (9%)
Query: 138 GNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTY 197
G ++ A L MR+ F ++ +N LI+ ++ A + M G PS QTY
Sbjct: 167 GGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTY 226
Query: 198 TKLMCGYAKHGDMDSI-----KTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGIL 252
+ LM G K D+DS+ + + LKP ++F + ++ + + A IL
Sbjct: 227 SSLMVGLGKRRDIDSVMGLLKEMETLGLKPN-----VYTFTICIRVLGRAGKINEAYEIL 281
Query: 253 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHG 312
M G P TYT L+ +D + + + + D + I L
Sbjct: 282 KRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDN 341
Query: 313 EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDM 362
+D V W E M + G P T+T L+ K G+
Sbjct: 342 RDLDSVKQF---------WSE---MEKDGHVPDVVTFTILVDALCKAGNF 379
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 134/327 (40%), Gaps = 34/327 (10%)
Query: 130 LISKYCQDGNIEGATKILE-FMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188
+I C+ N+ GA + E F +D +N LI G +A+ + A+ + +
Sbjct: 755 IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814
Query: 189 GLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASA 248
G P TY L+ Y K G +D ++ L + C + +T+ +++ S + A
Sbjct: 815 GCIPDVATYNFLLDAYGKSGKID----ELFELYKEMSTHECEANTITHNIVI--SGLVKA 868
Query: 249 EGI-------LTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLD 301
+ +MS P+A TY L+ G +K G + ++L L G +
Sbjct: 869 GNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFE---GMLDYGCRPN 925
Query: 302 I-IHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG 360
I+ + ++G G+ + +A F M + G+ P +TY+ L+ G
Sbjct: 926 CAIYNILINGFGKAGEADAACALF----------KRMVKEGVRPDLKTYSVLVDCLCMVG 975
Query: 361 DMDSIRRLLAQNGSSLVNGD---YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANH 417
+D + S +N D Y II+ L S E + ++++ G + D +
Sbjct: 976 RVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTY 1035
Query: 418 IYHLIN---KGQIDAAYRIVNTLARSA 441
++N G ++ A +I N + R+
Sbjct: 1036 NSLILNLGIAGMVEEAGKIYNEIQRAG 1062
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 109/272 (40%), Gaps = 35/272 (12%)
Query: 109 LESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYG 168
L+ G+ P+ VTY ++ Y + G I+ A K+L M + V N+LI
Sbjct: 494 LKDIGLVPDSVTYNMMMKC------YSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINT 547
Query: 169 HSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSI---------KTKIPS 219
+A+ + A + M + L+P+ TY L+ G K+G + K P+
Sbjct: 548 LYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPN 607
Query: 220 LKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 279
+ LF C + + ++ A +L M G P TY ++ G K+G
Sbjct: 608 TITFNTLFDC---------LCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQ 658
Query: 280 MDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVC-FVNIC------FHW- 331
+ Q LV D++ + L I++ I+ F+ C W
Sbjct: 659 VKEAMCFFHQM-KKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWE 717
Query: 332 -LEGPMMSQAGLEPSAQTYTKLMC-GYAKHGD 361
L G ++++AG++ + +L+ G + GD
Sbjct: 718 DLIGSILAEAGIDNAVSFSERLVANGICRDGD 749
Score = 40.4 bits (93), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 12/191 (6%)
Query: 181 ILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL 240
+ +M + ++ TY + + G + + ++ + +S+ L+L
Sbjct: 140 VFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLL 199
Query: 241 VSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYL 300
S A + M G PS QTY+ LM G K D+DSV LL + + + +
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259
Query: 301 DIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG 360
+ V G I+E I+ M G P TYT L+
Sbjct: 260 TFTICIRVLGRAGKINEAYEIL------------KRMDDEGCGPDVVTYTVLIDALCTAR 307
Query: 361 DMDSIRRLLAQ 371
+D + + +
Sbjct: 308 KLDCAKEVFEK 318
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 111 SQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHS 170
S+GI P+ TY LI N + G +E A KI ++ + FNALI G+S
Sbjct: 1025 SRGITPDLYTYNSLILNLGIA------GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYS 1078
Query: 171 QANDMASAEGILTMMSQAGLEPSAQTYTKL 200
+ A + M G P+ TY +L
Sbjct: 1079 LSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+ N+L+ + +++ ++P VTY L++ ++G I+
Sbjct: 537 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLG------KNGKIQ 590
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A ++ E M K P + FN L + +++ A +L M G P TY ++
Sbjct: 591 EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650
Query: 202 CGYAKHG 208
G K+G
Sbjct: 651 FGLVKNG 657
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 84/376 (22%), Positives = 157/376 (41%), Gaps = 49/376 (13%)
Query: 75 GELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKY 134
G+L + + Y L+ N + K++ G+ PN TY +++ +
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMN------QL 278
Query: 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA 194
C+DG + A ++ + MR++ + +N LI G + + A ++ M G+ P+
Sbjct: 279 CKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNL 338
Query: 195 QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS-----SDMASAE 249
TY L+ G+ G + + LK + S L ILVS D + A
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRG-----LSPSLVTYNILVSGFCRKGDTSGAA 393
Query: 250 GILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRL-LAQSGSSLVNG--DYLDIIHAL 306
++ M + G++PS TYT L+ +A+ +M+ +L L+ LV Y +IH
Sbjct: 394 KMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGF 453
Query: 307 AVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIR 366
+ G ++E S + M + EP+ Y ++ GY K G
Sbjct: 454 CIKGQ---MNEASRLF------------KSMVEKNCEPNEVIYNTMILGYCKEGSSYRAL 498
Query: 367 RLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQ 426
+LL + + A V+ + Y+ E++ K + S +A + +I+ G
Sbjct: 499 KLLKEMEEKEL---------APNVASY-RYMIEVLCKERK----SKEAERLVEKMIDSG- 543
Query: 427 IDAAYRIVNTLARSAN 442
ID + I++ ++R+ N
Sbjct: 544 IDPSTSILSLISRAKN 559
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 118/328 (35%), Gaps = 41/328 (12%)
Query: 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDG 138
V LD+ + L++ + D L +L G PN V Y LI C+ G
Sbjct: 159 VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGC------CKKG 212
Query: 139 NIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198
IE A + M +E + LI G + + M + G+ P+ TY
Sbjct: 213 EIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYN 272
Query: 199 KLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI---LVSSDMASAEGILTMM 255
+M K G K E + + N LI + A ++ M
Sbjct: 273 CVMNQLCKDG---RTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM 329
Query: 256 SQAGLEPSAQTYTKLM---CGYAKHGDMDSVRRLLAQSG--SSLVNGDYL--DIIHALAV 308
G+ P+ TY L+ CG K G S+ R L G SLV + L
Sbjct: 330 KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDT 389
Query: 309 SGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMD-SIRR 367
SG + + E M + G++PS TYT L+ +A+ +M+ +I+
Sbjct: 390 SGAAKMVKE-------------------MEERGIKPSKVTYTILIDTFARSDNMEKAIQL 430
Query: 368 LLAQNGSSLVNG--DYLDIIHALAVSGH 393
L+ LV Y +IH + G
Sbjct: 431 RLSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 127/323 (39%), Gaps = 35/323 (10%)
Query: 130 LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG 189
LI C+ G IE + +L + + F + ++ LI G + ++ A+ + M + G
Sbjct: 169 LIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLG 228
Query: 190 LEPSAQTYTKLMCGYAKHGDMDS-----IKTKIPSLKPQSELFLCFSFQLTNLLILVSSD 244
L + +TYT L+ G K+G K + + P + C QL
Sbjct: 229 LVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCK-----DGR 283
Query: 245 MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLD 301
A + M + G+ + TY L+ G + ++ +++ Q S +N + Y
Sbjct: 284 TKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNT 343
Query: 302 IIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGD 361
+I G G+ +S +C + GL PS TY L+ G+ + GD
Sbjct: 344 LIDGFC--GVGKLGKALS-------LCRD------LKSRGLSPSLVTYNILVSGFCRKGD 388
Query: 362 MDSIRRL---LAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANH- 417
++ + + G Y +I A S + E ++ ++ +G D +
Sbjct: 389 TSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEE-LGLVPDVHTYS 447
Query: 418 --IYHLINKGQIDAAYRIVNTLA 438
I+ KGQ++ A R+ ++
Sbjct: 448 VLIHGFCIKGQMNEASRLFKSMV 470
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 85/383 (22%), Positives = 161/383 (42%), Gaps = 53/383 (13%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
YN ++ + ++ + +++++GI PN VTY LI C G A++
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC------LCNYGRWSDASR 312
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+L M ++ + F+ALI + + AE + M + ++P TY+ L+ G+
Sbjct: 313 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 372
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLT-NLLI---LVSSDMASAEGILTMMSQAGLE 261
H +D K + + CF +T N LI + + + MSQ GL
Sbjct: 373 MHDRLDEAKHMFELMISKD----CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLV 428
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGEYIDEV 318
+ TYT L+ G+ + + D+ + + Q S V D Y ++ L +G E
Sbjct: 429 GNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVE----- 483
Query: 319 SAIVCF--------------VNICFH-----------WLEGPMMSQAGLEPSAQTYTKLM 353
+A+V F NI W +S G++P+ TYT +M
Sbjct: 484 TALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 543
Query: 354 CGYAKHG---DMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGY 410
G+ + G + D++ R + + G +G Y +I A G E+I +++ +
Sbjct: 544 SGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS-CRF 602
Query: 411 SADAAN--HIYHLINKGQIDAAY 431
DA+ + ++++ G++D ++
Sbjct: 603 VGDASTIGLVTNMLHDGRLDKSF 625
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 121/308 (39%), Gaps = 34/308 (11%)
Query: 72 VHTGELDVPLDISH----YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISN 127
+ GE L ISH Y+ L+ + LAK+ G EP+ VT L++
Sbjct: 101 ISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNG 160
Query: 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ 187
+C I A ++ M + + FN LI+G + N + A ++ M
Sbjct: 161 ------FCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVV 214
Query: 188 AGLEPSAQTYTKLMCGYAKHGDMD---SIKTKIP--SLKPQSELFLCFSFQLTNLLILVS 242
G +P TY ++ G K GD+D S+ K+ ++P ++ L N
Sbjct: 215 KGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNY----- 269
Query: 243 SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDI 302
++ A + T M G+ P+ TY L+ +G RLL+ +N + +
Sbjct: 270 KNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 329
Query: 303 IHAL-AVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGD 361
+ A G+ ++ L M+ ++ ++P TY+ L+ G+ H
Sbjct: 330 SALIDAFVKEGKLVEA------------EKLYDEMIKRS-IDPDIFTYSSLINGFCMHDR 376
Query: 362 MDSIRRLL 369
+D + +
Sbjct: 377 LDEAKHMF 384
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 117/298 (39%), Gaps = 42/298 (14%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
+N L+ + + ++ +G +P+ VTY +++ C+ G+I+ A
Sbjct: 189 FNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTY------GIVVNGLCKRGDIDLALS 242
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL---MC 202
+L+ M ++N +I ++ A + T M G+ P+ TY L +C
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 302
Query: 203 GYAKHGDM-----DSIKTKI-PSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
Y + D D I+ KI P++ S L F + + AE + M
Sbjct: 303 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAF---------VKEGKLVEAEKLYDEMI 353
Query: 257 QAGLEPSAQTYTKLMCGYAKHGDMDSVRRL--LAQSGSSLVNG-DYLDIIHALAVSGHGE 313
+ ++P TY+ L+ G+ H +D + + L S N Y +I +
Sbjct: 354 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC---KAK 410
Query: 314 YIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
+DE + MSQ GL + TYT L+ G+ + + D+ + + Q
Sbjct: 411 RVDEGMELF------------REMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQ 456
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 126/311 (40%), Gaps = 29/311 (9%)
Query: 104 DFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163
+F A+L+S G EP VTY L+ + + G A +L+ M + + P +N
Sbjct: 302 EFFAELKSCGYEPGTVTYNALLQ------VFGKAGVYTEALSVLKEMEENSCPADSVTYN 355
Query: 164 ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223
L+ + +A A G++ MM++ G+ P+A TYT ++ Y K G D S+K
Sbjct: 356 ELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEA 415
Query: 224 SELFLCFSFQLT--NLLILVSSDMASAEGI--LTMMSQAGLEPSAQTYTKLMCGYAKHGD 279
C T +L L+ S E I L M G P+ T+ ++ G
Sbjct: 416 G----CVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGM 471
Query: 280 MDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQ 339
V R+ + S D D + L +S +G EV A + M++
Sbjct: 472 DKFVNRVFREMKSCGFEPDR-DTFNTL-ISAYGRCGSEVDASKMYGE----------MTR 519
Query: 340 AGLEPSAQTYTKLMCGYAKHGDMDSIRRLLA---QNGSSLVNGDYLDIIHALAVSGHGEY 396
AG TY L+ A+ GD S +++ G Y ++ A G+
Sbjct: 520 AGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLG 579
Query: 397 IDEIISKIQPG 407
I+ I ++I+ G
Sbjct: 580 IERIENRIKEG 590
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 91/429 (21%), Positives = 162/429 (37%), Gaps = 72/429 (16%)
Query: 67 EDPFSVHTGELD-VPL-----DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVT 120
E +SV LD +PL D+ Y +L Y D +++ G P VT
Sbjct: 188 ESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVT 247
Query: 121 YQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEG 180
Y ++ + + + I G +L+ MR K E + ++ ++ + A+
Sbjct: 248 YNVILDVFGKMGRSWR--KILG---VLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKE 302
Query: 181 ILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLT-NLLI 239
+ G EP TY L+ + K G + T+ S+ + E C + +T N L+
Sbjct: 303 FFAELKSCGYEPGTVTYNALLQVFGKAG----VYTEALSVLKEMEENSCPADSVTYNELV 358
Query: 240 ---LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVN 296
+ + A G++ MM++ G+ P+A TYT ++ Y K G D +L +
Sbjct: 359 AAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCV 418
Query: 297 GDYLDIIHALAVSGHGEYIDEVSAIVC----------------------------FVNIC 328
+ L++ G +E+ ++C FVN
Sbjct: 419 PNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRV 478
Query: 329 FHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG---DMDSIRRLLAQNGSSLVNGDYLDII 385
F M G EP T+ L+ Y + G D + + + G + Y ++
Sbjct: 479 FR-----EMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALL 533
Query: 386 HALAVSGHGEYIDEIISKIQPG------VGYS------ADAANH-----IYHLINKGQID 428
+ALA G + +IS ++ YS A N+ I + I +GQI
Sbjct: 534 NALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIF 593
Query: 429 AAYRIVNTL 437
++ ++ TL
Sbjct: 594 PSWMLLRTL 602
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 117/270 (43%), Gaps = 30/270 (11%)
Query: 108 KLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIY 167
+++S G EP+R T+ LIS Y + G+ A+K+ M F +NAL+
Sbjct: 481 EMKSCGFEPDRDTFNTLIS------AYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLN 534
Query: 168 GHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF 227
++ D S E +++ M G +P+ +Y+ ++ YAK G+ I+ +I + + ++F
Sbjct: 535 ALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIE-RIENRIKEGQIF 593
Query: 228 LCFSFQLTNLLILVS---SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284
S+ L L+L + +A +E T+ + G +P + ++ + ++ D
Sbjct: 594 P--SWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAE 651
Query: 285 RLLAQSGSSLVNGD---YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAG 341
+L ++ D Y ++ G +E+ + ++
Sbjct: 652 GILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKT---------------LEKSQ 696
Query: 342 LEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
L+P +Y ++ G+ + G M R+L++
Sbjct: 697 LKPDLVSYNTVIKGFCRRGLMQEAVRMLSE 726
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 17/163 (10%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+ YN+L+ +Y+ + + L LE ++P+ V+Y + I +C+ G ++
Sbjct: 665 DLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTV------IKGFCRRGLMQ 718
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A ++L M ++ +N + G++ A E ++ M++ P+ T+ ++
Sbjct: 719 EAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVV 778
Query: 202 CGYAKHGD----MDSIKTKIPSLKPQSELFLCFSFQLTNLLIL 240
GY + G MD + +KI + P CF Q L L
Sbjct: 779 DGYCRAGKYSEAMDFV-SKIKTFDP------CFDDQSIQRLAL 814
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 108/301 (35%), Gaps = 68/301 (22%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLIS--NSKLISKYCQDGNIEGA 143
YNA+L + + L ++S G PNR T+ +++ +K + K+
Sbjct: 424 YNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKF--------V 475
Query: 144 TKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCG 203
++ M+ F FN LI + + A + M++AG TY L+
Sbjct: 476 NRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNA 535
Query: 204 YAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS 263
A+ GD S E +++ M G +P+
Sbjct: 536 LARKGDW-----------------------------------RSGENVISDMKSKGFKPT 560
Query: 264 AQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDI---------IHALAVS----- 309
+Y+ ++ YAK G+ + R+ + + ++ + ALA S
Sbjct: 561 ETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFT 620
Query: 310 ---GHGEYIDEV---SAIVCFV-NICFHWLEGPMMS--QAGLEPSAQTYTKLMCGYAKHG 360
HG D V S + F N + EG + S + GL P TY LM Y + G
Sbjct: 621 LFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRG 680
Query: 361 D 361
+
Sbjct: 681 E 681
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/208 (18%), Positives = 93/208 (44%), Gaps = 8/208 (3%)
Query: 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEG 142
++ YNALL S + ++ ++S+G +P +Y S ++ Y + GN G
Sbjct: 526 VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSY------SLMLQCYAKGGNYLG 579
Query: 143 ATKILEFMRD-KTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
+I +++ + FP S + L+ + + +A +E T+ + G +P + ++
Sbjct: 580 IERIENRIKEGQIFP-SWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSML 638
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE 261
+ ++ D + + S++ ++ + + + AE IL + ++ L+
Sbjct: 639 SIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLK 698
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289
P +Y ++ G+ + G M R+L++
Sbjct: 699 PDLVSYNTVIKGFCRRGLMQEAVRMLSE 726
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/182 (18%), Positives = 76/182 (41%), Gaps = 10/182 (5%)
Query: 109 LESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYG 168
+ G +P+ V + ++S + ++ + A ILE +R+ +N+L+
Sbjct: 622 FKKHGYKPDMVIFNSMLS------IFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDM 675
Query: 169 HSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228
+ + + AE IL + ++ L+P +Y ++ G+ + G M + + +
Sbjct: 676 YVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPC 735
Query: 229 CFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD----MDSVR 284
F++ A E ++ M++ P+ T+ ++ GY + G MD V
Sbjct: 736 IFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVS 795
Query: 285 RL 286
++
Sbjct: 796 KI 797
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 128/298 (42%), Gaps = 32/298 (10%)
Query: 82 DISHYNALLRVYLD---NEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDG 138
++ YN L+ Y N + L ++ + PN T+ LI + +D
Sbjct: 257 NVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDG------FWKDD 310
Query: 139 NIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198
N+ G+ K+ + M D+ + +N+LI G ++ A + M AG++P+ TY
Sbjct: 311 NLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYN 370
Query: 199 KLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTM---M 255
L+ G+ K+ + S+K Q + + ++ N+LI + + + M
Sbjct: 371 ALINGFCKNDMLKEALDMFGSVKGQGAV---PTTRMYNMLIDAYCKLGKIDDGFALKEEM 427
Query: 256 SQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDII--HALAVSGHGE 313
+ G+ P TY L+ G ++G++++ ++L Q L + D++ H L + G+
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQ----LTSKGLPDLVTFHIL-MEGYCR 482
Query: 314 YIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
+ A + MS+ GL+P TY +M GY K G++ + + Q
Sbjct: 483 KGESRKAAMLL----------KEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQ 530
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 13/203 (6%)
Query: 68 DPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISN 127
D F G+ VP YN L+ Y ++E +GI P+ TY LI+
Sbjct: 387 DMFGSVKGQGAVP-TTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAG 445
Query: 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ 187
C++GNIE A K+ + + K P F+ L+ G+ + + A +L MS+
Sbjct: 446 ------LCRNGNIEAAKKLFDQLTSKGLP-DLVTFHILMEGYCRKGESRKAAMLLKEMSK 498
Query: 188 AGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSS---D 244
GL+P TY +M GY K G++ + ++ + L + + N+L+ S
Sbjct: 499 MGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRM--NVASYNVLLQGYSQKGK 556
Query: 245 MASAEGILTMMSQAGLEPSAQTY 267
+ A +L M + GL P+ TY
Sbjct: 557 LEDANMLLNEMLEKGLVPNRITY 579
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 7/227 (3%)
Query: 63 NLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQ 122
NLP + DV ++ YN+L+ + K+ S G++PN +TY
Sbjct: 311 NLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYN 370
Query: 123 QLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGIL 182
LI+ +C++ ++ A + ++ + + ++N LI + + + +
Sbjct: 371 ALING------FCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALK 424
Query: 183 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242
M + G+ P TY L+ G ++G++++ K L + L +F +
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILMEGYCRK 483
Query: 243 SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289
+ A +L MS+ GL+P TY +M GY K G++ + + Q
Sbjct: 484 GESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQ 530
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 119/293 (40%), Gaps = 21/293 (7%)
Query: 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDG 138
V + Y AL+ Y N + + L +++++ I P+ +TY +I+ C G
Sbjct: 172 VSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVIN-------ACARG 224
Query: 139 NI--EGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
+ EG + MR + +N L+ + AE + M+ G+ P T
Sbjct: 225 GLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTT 284
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
Y+ L+ + K ++ + + + L S+ + S + A G+ M
Sbjct: 285 YSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344
Query: 257 QAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYID 316
AG P+A TY+ L+ + + G D VR+L + SS + D + V G G Y
Sbjct: 345 AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFK 404
Query: 317 EVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLL 369
EV + FH M + +EP +TY ++ K G + R++L
Sbjct: 405 EVVTL-------FH-----DMVEENIEPDMETYEGIIFACGKGGLHEDARKIL 445
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 117/291 (40%), Gaps = 54/291 (18%)
Query: 116 PNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAN-D 174
P++ + + S + LI+ Y ++G E + ++L+ M+++ S +N +I ++ D
Sbjct: 168 PSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLD 227
Query: 175 MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQL 234
G+ M G++P TY L+ A G D
Sbjct: 228 WEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDE---------------------- 265
Query: 235 TNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ--SGS 292
AE + M+ G+ P TY+ L+ + K ++ V LL + SG
Sbjct: 266 -------------AEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGG 312
Query: 293 SLVN-GDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTK 351
SL + Y ++ A A SG I E + FH M AG P+A TY+
Sbjct: 313 SLPDITSYNVLLEAYAKSGS---IKEAMGV-------FH-----QMQAAGCTPNANTYSV 357
Query: 352 LMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIIS 402
L+ + + G D +R+L + SS + D + V G G Y E+++
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVT 408
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 80/410 (19%), Positives = 146/410 (35%), Gaps = 89/410 (21%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
DI+ YN LL Y + ++++ G PN TY S L++ + Q G +
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTY------SVLLNLFGQSGRYD 369
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQAN-------------------DMASAEGIL 182
++ M+ +N LI + DM + EGI+
Sbjct: 370 DVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGII 429
Query: 183 TMMSQAGLE----------------PSAQTYTKLMCGYAKHGDMDSIKTKIPSL-----K 221
+ GL PS++ YT ++ + + + ++
Sbjct: 430 FACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSN 489
Query: 222 PQSELF--LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 279
P E F L +SF L+ +E IL+ + +G+ + T+ + Y + G
Sbjct: 490 PSIETFHSLLYSFARGGLV-------KESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGK 542
Query: 280 MDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQ 339
+ + S + D + L+V +DE C E M
Sbjct: 543 FEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDE----------CREQFE--EMKA 590
Query: 340 AGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSS-----------LVNGDYLDIIHAL 388
+ + PS Y ++ Y K D + LL + S+ ++ GDY D +
Sbjct: 591 SDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQ 650
Query: 389 AVSGHGEYIDEIISKIQPGVG---YSADAANHIYHLINKGQIDAAYRIVN 435
V EY+ + ++ G+G Y+A + ++ L GQ + A R++N
Sbjct: 651 IV----EYVLDKLNSEGCGLGIRFYNA-LLDALWWL---GQKERAARVLN 692
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 147/361 (40%), Gaps = 28/361 (7%)
Query: 87 NALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKI 146
N + ++ + T FL +E +GIEPN V Y ++ +C+ N++ A I
Sbjct: 453 NKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNN------MMLAHCRMKNMDLARSI 506
Query: 147 LEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206
M +K + ++ LI G + D +A ++ M+ + E + Y ++ G K
Sbjct: 507 FSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCK 566
Query: 207 HGDMDSIKTKIPSL-KPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQ 265
G K + +L K + C S+ + D SA MS+ G P+
Sbjct: 567 VGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVV 626
Query: 266 TYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFV 325
T+T L+ G+ K MD + + S + D L AL + G + D +A F
Sbjct: 627 TFTSLINGFCKSNRMDLALEMTHEMKSMELKLD-LPAYGAL-IDGFCKKNDMKTAYTLFS 684
Query: 326 NICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDS---IRRLLAQNGSSLVNGDYL 382
+ + GL P+ Y L+ G+ G MD+ + + + +G S Y
Sbjct: 685 E----------LPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYT 734
Query: 383 DIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLIN----KGQIDAAYRIVNTLA 438
+I L G+ ++ S++ +G D H+ L+N KGQ A +++ +
Sbjct: 735 TMIDGLLKDGNINLASDLYSELL-DLGIVPDEILHMV-LVNGLSKKGQFLKASKMLEEMK 792
Query: 439 R 439
+
Sbjct: 793 K 793
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/394 (18%), Positives = 148/394 (37%), Gaps = 97/394 (24%)
Query: 104 DFLAKLESQ-GIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162
D L ++ + G+ ++ TY + +I + ++GN+E A ++++ M P+S
Sbjct: 295 DLLREMRGKLGVPASQETY------TSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAA 348
Query: 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS-----IKTKI 217
+L+ G+ + N++ A + M + GL P ++ ++ + K+ +M+ ++ K
Sbjct: 349 TSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKS 408
Query: 218 PSLKPQS---------------------------ELFLCFSFQLTNLLILVSSD--MASA 248
+ P S E ++ F + +L + +A
Sbjct: 409 VRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMCNKIFLLFCKQGKVDAA 468
Query: 249 EGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAV 308
L MM Q G+EP+ Y +M + + +MD R + ++
Sbjct: 469 TSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSE------------------- 509
Query: 309 SGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRL 368
M + GLEP+ TY+ L+ G+ K+ D + +
Sbjct: 510 ----------------------------MLEKGLEPNNFTYSILIDGFFKNKDEQNAWDV 541
Query: 369 LAQNGSSLVNGD---YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANH---IYHLI 422
+ Q +S + Y II+ L G E++ + YS ++ I +
Sbjct: 542 INQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFV 601
Query: 423 NKGQIDAA---YRIVNTLARSANINGEQLPVGGF 453
G D+A YR ++ +S N+ + GF
Sbjct: 602 KVGDTDSAVETYREMSENGKSPNVVTFTSLINGF 635
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 103/233 (44%), Gaps = 12/233 (5%)
Query: 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNI 140
+ + YN+++ ++ T S + ++ G PN VT+ + LI+ +C+ +
Sbjct: 588 MSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTF------TSLINGFCKSNRM 641
Query: 141 EGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL 200
+ A ++ M+ + + ALI G + NDM +A + + + + GL P+ Y L
Sbjct: 642 DLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSL 701
Query: 201 MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL--ILVSSDMASAEGILTMMSQA 258
+ G+ G MD+ K ++ C F T ++ +L ++ A + + +
Sbjct: 702 ISGFRNLGKMDAAIDLYK--KMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDL 759
Query: 259 GLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGH 311
G+ P + L+ G +K G ++L + V + L +++ ++GH
Sbjct: 760 GIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVL--LYSTVIAGH 810
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/374 (20%), Positives = 152/374 (40%), Gaps = 69/374 (18%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLI---------------- 125
++ YN ++ + ++ +++ +G+EPN TY LI
Sbjct: 483 NVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVI 542
Query: 126 -----SN--------SKLISKYCQDGNIEGATKILE-FMRDKTFPISEGVFNALIYGHSQ 171
SN + +I+ C+ G A ++L+ +++K + +S +N++I G +
Sbjct: 543 NQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVK 602
Query: 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD---SIKTKIPSLKPQSEL-- 226
D SA MS+ G P+ T+T L+ G+ K MD + ++ S++ + +L
Sbjct: 603 VGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPA 662
Query: 227 --FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284
L F N DM +A + + + + GL P+ Y L+ G+ G MD+
Sbjct: 663 YGALIDGFCKKN-------DMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAI 715
Query: 285 RLLAQSGSSLVNGD---YLDIIHALAVSGH--------------GEYIDEVSAIVCFVNI 327
L + + ++ D Y +I L G+ G DE+ +V +
Sbjct: 716 DLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGL 775
Query: 328 CF--HWLEGPM----MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDY 381
+L+ M + + P+ Y+ ++ G+ + G+++ RL + + D
Sbjct: 776 SKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHD- 834
Query: 382 LDIIHALAVSGHGE 395
D + L VSG E
Sbjct: 835 -DTVFNLLVSGRVE 847
Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
EL + ++S YN+L+ + + + D K+ + GI + TY + +I
Sbjct: 688 ELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTY------TTMIDGLL 741
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
+DGNI A+ + + D E + L+ G S+ A +L M + + P+
Sbjct: 742 KDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVL 801
Query: 196 TYTKLMCGYAKHGDMD 211
Y+ ++ G+ + G+++
Sbjct: 802 LYSTVIAGHHREGNLN 817
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 126/309 (40%), Gaps = 40/309 (12%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
++ Y AL+ YL + + + S+G PN VTY S LI +C+ G +E
Sbjct: 552 NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTY------SALIDGHCKAGQVE 605
Query: 142 GATKILEFM-RDKTFPISEGVFN---------------ALIYGHSQANDMASAEGILTMM 185
A +I E M K P + F AL+ G +++ + A +L M
Sbjct: 606 KACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAM 665
Query: 186 SQAGLEPSAQTYTKLMCGYAKHGDMD---SIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242
S G EP+ Y L+ G K G +D +KT++ + L+ +S + +
Sbjct: 666 SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT-YSSLIDRYFKVKR 724
Query: 243 SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDI 302
D+AS +L+ M + P+ YT+++ G K G D +L+ + +
Sbjct: 725 QDLASK--VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNV--V 780
Query: 303 IHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDM 362
+ + G G ++ + C LE M G+ P+ TY L+ K+G +
Sbjct: 781 TYTAMIDGFG--------MIGKIETCLELLE--RMGSKGVAPNYVTYRVLIDHCCKNGAL 830
Query: 363 DSIRRLLAQ 371
D LL +
Sbjct: 831 DVAHNLLEE 839
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 150/363 (41%), Gaps = 59/363 (16%)
Query: 67 EDPFSV---HTGELDVPLDISHYNALLRVYLDNEHTFSPTDFL-AKLESQGIEPNRVTYQ 122
E FSV G+ +P D S Y+ +L YL N L +++ G+ + TY
Sbjct: 465 EKAFSVIREMIGQGFIP-DTSTYSKVLN-YLCNASKMELAFLLFEEMKRGGLVADVYTY- 521
Query: 123 QLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGIL 182
+ ++ +C+ G IE A K MR+ + + ALI+ + +A ++ A +
Sbjct: 522 -----TIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576
Query: 183 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDS---IKTKIPSLKPQSELFLCFSFQLTN--- 236
M G P+ TY+ L+ G+ K G ++ I ++ K ++ + F N
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER 636
Query: 237 --------LL--ILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD---SV 283
LL S + A +L MS G EP+ Y L+ G K G +D V
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696
Query: 284 RRLLAQSG--------SSLVNGDYLDIIHALAVSGHGEYIDEVSA--IVCFVNICFHWLE 333
+ +++ G SSL++ + LA + ++ A +V + + ++
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEM----ID 752
Query: 334 G--------------PMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNG 379
G MM + G +P+ TYT ++ G+ G +++ LL + GS V
Sbjct: 753 GLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAP 812
Query: 380 DYL 382
+Y+
Sbjct: 813 NYV 815
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/350 (21%), Positives = 133/350 (38%), Gaps = 62/350 (17%)
Query: 104 DFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK-ILEFMRDKTFPISEGVF 162
DFL ++ + PN VTY L+ C + G K +L M + S +F
Sbjct: 323 DFLNRMRATSCLPNVVTYSTLLCG-------CLNKKQLGRCKRVLNMMMMEGCYPSPKIF 375
Query: 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKP 222
N+L++ + + D + A +L M + G P Y L+ GD DS+ + L
Sbjct: 376 NSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSIC--GDKDSLNCDLLDLAE 433
Query: 223 QSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS 282
++ S+M +A +L + + ++T+ +C K+ S
Sbjct: 434 KA-----------------YSEMLAAGVVLNKI-------NVSSFTRCLCSAGKYEKAFS 469
Query: 283 VRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGL 342
V R + G Y +++ L + E + F E M + GL
Sbjct: 470 VIREMIGQGFIPDTSTYSKVLNYLCNASKME-------------LAFLLFEE--MKRGGL 514
Query: 343 EPSAQTYTKLMCGYAKHGDMDSIRRL---LAQNGSSLVNGDYLDIIHALAVSGHGEYIDE 399
TYT ++ + K G ++ R+ + + G + Y +IHA + Y +E
Sbjct: 515 VADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANE 574
Query: 400 II-SKIQPG-----VGYSADAANHIYHLINKGQIDAAYRIVNTLARSANI 443
+ + + G V YSA H GQ++ A +I + S ++
Sbjct: 575 LFETMLSEGCLPNIVTYSALIDGH----CKAGQVEKACQIFERMCGSKDV 620
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
Query: 80 PLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGN 139
P + Y++L+ Y + + L+K+ PN V Y ++I C+ G
Sbjct: 706 PATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDG------LCKVGK 759
Query: 140 IEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTK 199
+ A K+++ M +K + + A+I G + + +L M G+ P+ TY
Sbjct: 760 TDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRV 819
Query: 200 LMCGYAKHGDMDSIKTKIPSLK 221
L+ K+G +D + +K
Sbjct: 820 LIDHCCKNGALDVAHNLLEEMK 841
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 9/203 (4%)
Query: 87 NALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKI 146
N L+R + N + L +L+ P+R TY + LI + + ++ A+ I
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTY------NCLIQAFLKADRLDSASLI 257
Query: 147 LEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206
M + Y + A LT++ P YTKL+ G +
Sbjct: 258 HREMSLANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDTVFYTKLISGLCE 314
Query: 207 HGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQT 266
+ + ++ S L ++ L + + +L MM G PS +
Sbjct: 315 ASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKI 374
Query: 267 YTKLMCGYAKHGDMDSVRRLLAQ 289
+ L+ Y GD +LL +
Sbjct: 375 FNSLVHAYCTSGDHSYAYKLLKK 397
Score = 33.9 bits (76), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 35/220 (15%)
Query: 130 LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG 189
L+ +D + + + L+ +RD + N L+ H + + A L +
Sbjct: 171 LVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFR 230
Query: 190 LEPSAQTYTKLMCGYAKHGDMDSI-----KTKIPSLKPQSELFLCFSFQLTNL------L 238
PS TY L+ + K +DS + + +L+ CF++ L + L
Sbjct: 231 FRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREAL 290
Query: 239 ILVSSD---------------------MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 277
LV ++ A L M P+ TY+ L+CG
Sbjct: 291 TLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNK 350
Query: 278 GDMDSVRRLL---AQSGSSLVNGDYLDIIHALAVSGHGEY 314
+ +R+L G + ++HA SG Y
Sbjct: 351 KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSY 390
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 135/335 (40%), Gaps = 30/335 (8%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
+++ ++ +N ++ V FL +E GI+P VTY L+ L
Sbjct: 219 MEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSL------ 272
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G IEGA I+ M+ K F +N ++ S + A +L M + GL P + +
Sbjct: 273 RGRIEGARLIISEMKSKGFQPDMQTYNPIL---SWMCNEGRASEVLREMKEIGLVPDSVS 329
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
Y L+ G + +GD++ + Q + +++ + + + + +AE ++ +
Sbjct: 330 YNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIR 389
Query: 257 QAGLEPSAQTYTKLMCGYAKHGDMDSVRRL---LAQSGSSLVNGDYLDIIHALAVSGHGE 313
+ G+ + TY L+ GY +HGD L + G Y +I+ L
Sbjct: 390 EKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTR 449
Query: 314 YIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNG 373
DE+ F + G G++P LM G+ G+MD LL +
Sbjct: 450 EADEL----------FEKVVG-----KGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMD 494
Query: 374 SSLVNGD---YLDIIHALAVSGHGEYIDEIISKIQ 405
+N D Y ++ L G E E++ +++
Sbjct: 495 MMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMK 529
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 134/320 (41%), Gaps = 34/320 (10%)
Query: 79 VPLDISHYNALLRVYLDN---EHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
VP +S YN L+R +N E F+ D + K QG+ P TY LI + +K
Sbjct: 324 VPDSVS-YNILIRGCSNNGDLEMAFAYRDEMVK---QGMVPTFYTYNTLIHGLFMENK-- 377
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
IE A ++ +R+K + +N LI G+ Q D A + M G++P+
Sbjct: 378 ----IEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQF 433
Query: 196 TYTKL---MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGIL 252
TYT L +C K + D + K+ + +L + + + I +M A +L
Sbjct: 434 TYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAI---GNMDRAFSLL 490
Query: 253 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHG 312
M + P TY LM G G + R L+ + + D+ I + +SG+
Sbjct: 491 KEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDH--ISYNTLISGYS 548
Query: 313 EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN 372
+ D A + + M+S G P+ TY L+ G +K+ + + LL +
Sbjct: 549 KKGDTKHAFM---------VRDEMLS-LGFNPTLLTYNALLKGLSKNQEGELAEELLREM 598
Query: 373 GSSLV---NGDYLDIIHALA 389
S + + + +I A++
Sbjct: 599 KSEGIVPNDSSFCSVIEAMS 618
Score = 40.4 bits (93), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 46/252 (18%), Positives = 101/252 (40%), Gaps = 26/252 (10%)
Query: 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSL 220
+F+ L+ Q + A +M + G P +T ++ ++ +++ +
Sbjct: 157 LFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADM 216
Query: 221 KPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 280
++F + ++ + A+G L +M G++P+ TY L+ G++ G +
Sbjct: 217 YRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRI 276
Query: 281 DSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHG-EYIDEVSAIVCFVNICFHWLEGPM 336
+ R ++++ S D Y I+ + G E + E
Sbjct: 277 EGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLRE------------------- 317
Query: 337 MSQAGLEPSAQTYTKLMCGYAKHGDMD---SIRRLLAQNGSSLVNGDYLDIIHALAVSGH 393
M + GL P + +Y L+ G + +GD++ + R + + G Y +IH L +
Sbjct: 318 MKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENK 377
Query: 394 GEYIDEIISKIQ 405
E + +I +I+
Sbjct: 378 IEAAEILIREIR 389
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 92/201 (45%), Gaps = 14/201 (6%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+ Y+ ++ E T +F ++ S+ ++PN V Y LI YC+ G +
Sbjct: 622 DVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR------AYCRSGRLS 675
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A ++ E M+ K + + +LI G S + + A+ + M GLEP+ YT L+
Sbjct: 676 MALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALI 735
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL----VSSDMASAEGILTMMSQ 257
GY K G M ++ + + ++ ++T +++ ++ A +L M +
Sbjct: 736 DGYGKLGQMVKVECLLREMHSKN----VHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 791
Query: 258 AGLEPSAQTYTKLMCGYAKHG 278
G+ P + TY + + GY K G
Sbjct: 792 KGIVPDSITYKEFIYGYLKQG 812
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 140/346 (40%), Gaps = 63/346 (18%)
Query: 105 FLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164
F K+ +G+EP +TY S L+ + I A +L+ M K FP + V+N
Sbjct: 330 FKEKMVERGMEPTLITY------SILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNN 383
Query: 165 LIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS 224
LI +A + A I +M GL ++ TY L+ GY K+G D+ + + +
Sbjct: 384 LIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM---- 439
Query: 225 ELFLCFSFQ---LTNLLILVSSDMA--SAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 279
L + F+ T+++ L+ S + SA + M + P T L+ G KHG
Sbjct: 440 -LSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGK 498
Query: 280 MDSVRRLLAQSGSSLVNGDYLD------IIHALA--------------VSGHGEYIDEVS 319
L Q L G +D ++H L + G G +D VS
Sbjct: 499 HSKALELWFQ---FLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVS 555
Query: 320 AIVCFVNIC--------FHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
C F +L+ M + GL+P TY+ L+CG +M+ + +
Sbjct: 556 YNTLISGCCGKKKLDEAFMFLDE--MVKRGLKPDNYTYSILICGLF---NMNKVEEAIQF 610
Query: 372 NGSSLVNGDYLDI-IHALAVSG---------HGEYIDEIISK-IQP 406
NG D+ +++ + G E+ DE++SK +QP
Sbjct: 611 WDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQP 656
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 115/293 (39%), Gaps = 44/293 (15%)
Query: 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNI 140
+D YN L+ + FL ++ +G++P+ TY LI C N+
Sbjct: 551 MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI---------CGLFNM 601
Query: 141 EGATKILEFM----RDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
+ ++F R+ P ++ +I G +A + M ++P+
Sbjct: 602 NKVEEAIQFWDDCKRNGMLP-DVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVV 660
Query: 197 YTKLMCGYAKHGDMDSI-----KTKIPSLKPQSELFLCFSFQLTNLL--ILVSSDMASAE 249
Y L+ Y + G + K + P S + T+L+ + + S + A+
Sbjct: 661 YNHLIRAYCRSGRLSMALELREDMKHKGISPNSATY-------TSLIKGMSIISRVEEAK 713
Query: 250 GILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVS 309
+ M GLEP+ YT L+ GY K G M V LL + S V+ + I + + +
Sbjct: 714 LLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN--KITYTVMIG 771
Query: 310 GHGE--YIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG 360
G+ + E S ++ M + G+ P + TY + + GY K G
Sbjct: 772 GYARDGNVTEASRLL------------NEMREKGIVPDSITYKEFIYGYLKQG 812
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 129/326 (39%), Gaps = 41/326 (12%)
Query: 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGL 190
I+ +C+ G +E A K+ M + + FN +I G A M + G+
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 339
Query: 191 EPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI---LVSSDMAS 247
EP+ TY+ L+ G + I LK ++ + + N LI + + +
Sbjct: 340 EPTLITYSILVKGLTR---AKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNK 396
Query: 248 AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALA 307
A I +M GL ++ TY L+ GY K+G D+ RLL + S N +
Sbjct: 397 AIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVN--------- 447
Query: 308 VSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAG------LEPSAQTYTKLMCGYAKHGD 361
G + ++++C +C H + + G + P T L+ G KHG
Sbjct: 448 ---QGSF----TSVICL--LCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGK 498
Query: 362 MDSIRRLLAQ--NGSSLVNGDYLD-IIHALAVSGHGEYIDEI--ISKIQPGVGYSADAAN 416
L Q N +V+ + ++H L +G +DE I K G G D +
Sbjct: 499 HSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGK---LDEAFRIQKEILGRGCVMDRVS 555
Query: 417 H---IYHLINKGQIDAAYRIVNTLAR 439
+ I K ++D A+ ++ + +
Sbjct: 556 YNTLISGCCGKKKLDEAFMFLDEMVK 581
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 129/333 (38%), Gaps = 35/333 (10%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+ YN L+ FL + S G +PN +T+ ++ + C G
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRS------MCSTGRWM 326
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A K+L M K F S FN LI + + A IL M Q G +P++ +Y L+
Sbjct: 327 DAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLL 386
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLT--NLLILVSSD--MASAEGILTMMSQ 257
G+ K MD + + + C+ +T +L + D + A IL +S
Sbjct: 387 HGFCKEKKMDRAIEYLERMVSRG----CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442
Query: 258 AGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGEY 314
G P TY ++ G AK G +LL + + + D Y ++ L+ G
Sbjct: 443 KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK--- 499
Query: 315 IDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLA---Q 371
+DE FH E + G+ P+A T+ +M G K D L
Sbjct: 500 VDEAIKF-------FHEFE-----RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMIN 547
Query: 372 NGSSLVNGDYLDIIHALAVSGHGEYIDEIISKI 404
G Y +I LA G + E+++++
Sbjct: 548 RGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 135/341 (39%), Gaps = 48/341 (14%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
+ V D+ YN +LR D+ + L ++ + P+ +TY LI + C
Sbjct: 197 RMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEAT------C 250
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
+D + A K+L+ MRD+ +N L+ G + + A L M +G +P+
Sbjct: 251 RDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVI 310
Query: 196 TYT---KLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS-----SDMAS 247
T+ + MC + MD+ K L+ FS + IL++ +
Sbjct: 311 THNIILRSMCSTGRW--MDAEKLLADMLRKG------FSPSVVTFNILINFLCRKGLLGR 362
Query: 248 AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDII---- 303
A IL M Q G +P++ +Y L+ G+ K MD L + S G Y DI+
Sbjct: 363 AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS---RGCYPDIVTYNT 419
Query: 304 HALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMD 363
A+ G+ D V + +S G P TY ++ G AK G
Sbjct: 420 MLTALCKDGKVEDAVEIL-------------NQLSSKGCSPVLITYNTVIDGLAKAGKTG 466
Query: 364 SIRRLLAQNGSSLVNGD---YLDIIHALAVSGHGEYIDEII 401
+LL + + + D Y ++ L+ G +DE I
Sbjct: 467 KAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK---VDEAI 504
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/378 (23%), Positives = 127/378 (33%), Gaps = 95/378 (25%)
Query: 72 VHTGELD--------------VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN 117
V TGEL+ VP DI L+R + T L LE G P+
Sbjct: 113 VRTGELEEGFKFLENMVYHGNVP-DIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171
Query: 118 RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV--FNALIYGHSQANDM 175
+TY +IS YC+ G I A +L+ M +S V +N ++ + +
Sbjct: 172 VITYNVMISG------YCKAGEINNALSVLDRM-----SVSPDVVTYNTILRSLCDSGKL 220
Query: 176 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLT 235
A +L M Q P TYT L+ +
Sbjct: 221 KQAMEVLDRMLQRDCYPDVITYTILIEATCR----------------------------- 251
Query: 236 NLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS-- 293
S + A +L M G P TY L+ G K G +D + L SS
Sbjct: 252 ------DSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGC 305
Query: 294 --------------LVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVN-ICFHWLEG---- 334
G ++D LA + V +N +C L G
Sbjct: 306 QPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAID 365
Query: 335 --PMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDII------H 386
M Q G +P++ +Y L+ G+ K MD L + S G Y DI+
Sbjct: 366 ILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS---RGCYPDIVTYNTMLT 422
Query: 387 ALAVSGHGEYIDEIISKI 404
AL G E EI++++
Sbjct: 423 ALCKDGKVEDAVEILNQL 440
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/365 (21%), Positives = 138/365 (37%), Gaps = 43/365 (11%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
DI YNA++ + DF ++E +GI PN VTY L++ C
Sbjct: 189 DIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG------LCNSSRWS 242
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A ++L M K + ++AL+ + + A+ + M + ++P TY+ L+
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLI 302
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE 261
G H +D + + L S+ + + + MSQ GL
Sbjct: 303 NGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLV 362
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGEY---- 314
+ TY L+ G+ + GD+D + +Q ++ D Y ++ L +G E
Sbjct: 363 SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVI 422
Query: 315 ----------IDEVSAIVCFVNICFH------WLEGPMMSQAGLEPSAQTYTKLMCGYAK 358
+D V+ +C W +S GL+P TYT +M G
Sbjct: 423 FEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCT 482
Query: 359 HGDMDSIRRL--------LAQNGSSLVNGDYL---DIIHALAVSGHGEYIDEIISKIQPG 407
G + + L L +N +L +GD ++I + G Y ++ I+ G
Sbjct: 483 KGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCG---YAPSLLKDIKSG 539
Query: 408 VGYSA 412
V A
Sbjct: 540 VCKKA 544
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 119/310 (38%), Gaps = 58/310 (18%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+ +N ++ + L K+ G EP+RVT L++ +C+ +
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNG------FCRRNRVS 172
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL- 200
A +++ M + + +NA+I + + A + + G+ P+ TYT L
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 232
Query: 201 --MCGYAKHGDM-----DSIKTKI-PSLKPQSELFLCFSFQLTNLLILVSSDMASAEGIL 252
+C ++ D D IK KI P++ S L F + + + A+ +
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF---------VKNGKVLEAKELF 283
Query: 253 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRR---LLAQSG--------SSLVNGDYLD 301
M + ++P TY+ L+ G H +D + L+ G ++L+NG
Sbjct: 284 EEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING---- 339
Query: 302 IIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGD 361
A V + E MSQ GL + TY L+ G+ + GD
Sbjct: 340 FCKAKRVEDGMKLFRE-------------------MSQRGLVSNTVTYNTLIQGFFQAGD 380
Query: 362 MDSIRRLLAQ 371
+D + +Q
Sbjct: 381 VDKAQEFFSQ 390
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 26/236 (11%)
Query: 130 LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG 189
+I Y + G++ + ++ + MR + FN LI G + M A IL M+ AG
Sbjct: 595 IIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAG 654
Query: 190 LEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAE 249
+ + TYTK+M GYA GD L+ + F+++ S M SA
Sbjct: 655 VSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSAL 714
Query: 250 GILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHAL 306
+ MS + ++ Y L+ G+A+ GD+ L+ Q V D Y I A
Sbjct: 715 AVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISAC 774
Query: 307 AVSGH----GEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAK 358
+ +G + I+E+ A+ G++P+ +TYT L+ G+A+
Sbjct: 775 SKAGDMNRATQTIEEMEAL-------------------GVKPNIKTYTTLIKGWAR 811
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 81/191 (42%), Gaps = 41/191 (21%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
Y +++ Y T ++ +L+++G++ + TY+ L+ C+ G ++ A
Sbjct: 662 YTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKAC------CKSGRMQSALA 715
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+ + M + P + V+N LI G ++ D+ A ++ M + G++P TYT + +
Sbjct: 716 VTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACS 775
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQ 265
K GDM+ A + M G++P+ +
Sbjct: 776 KAGDMN-----------------------------------RATQTIEEMEALGVKPNIK 800
Query: 266 TYTKLMCGYAK 276
TYT L+ G+A+
Sbjct: 801 TYTTLIKGWAR 811
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/369 (21%), Positives = 143/369 (38%), Gaps = 55/369 (14%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
Y +L+ Y + K++ +GIE + VTY S ++ + + G+ E A
Sbjct: 347 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTY------SVIVGGFSKAGHAEAADY 400
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+ + ++ ++ +IY H Q +M AE ++ M + G++ Y +M GY
Sbjct: 401 WFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYT 460
Query: 206 -----KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGL 260
K G + + K P + C L NL V ++ A + +M + G+
Sbjct: 461 MVADEKKGLVVFKRLKECGFTPTVVTYGC----LINLYTKVGK-ISKALEVSRVMKEEGV 515
Query: 261 EPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGEYIDE 317
+ + +TY+ ++ G+ K D + + + D Y +II A G+ +D
Sbjct: 516 KHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGN---MDR 572
Query: 318 VSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDM-------DSIRRLLA 370
V M + P+ +T+ ++ GYAK GDM D +RR
Sbjct: 573 AIQTV------------KEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGC 620
Query: 371 QNGSSLVNGDYLDIIHALAVSGHGEYIDEII-----------SKIQPG---VGYSADAAN 416
NG ++ + E +DE+ +KI G VG + A
Sbjct: 621 VPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFE 680
Query: 417 HIYHLINKG 425
+ L N+G
Sbjct: 681 YFTRLQNEG 689
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 106/263 (40%), Gaps = 30/263 (11%)
Query: 114 IEPNRVTYQQLISNSKLISK------------YCQDGNIEGATKILEFMRDKTFPISEGV 161
++ N +Q +IS + ISK Y + G++ A + E MR + + +
Sbjct: 287 LDTNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 346
Query: 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLK 221
+ +LI+ ++ DM A + M + G+E S TY+ ++ G++K G ++ K
Sbjct: 347 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAK 406
Query: 222 PQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 281
+ + + +M AE ++ M + G++ Y +M GY D
Sbjct: 407 RIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 466
Query: 282 S---VRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMS 338
V + L + G + Y +I+ G EVS + M
Sbjct: 467 KGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRV---------------MK 511
Query: 339 QAGLEPSAQTYTKLMCGYAKHGD 361
+ G++ + +TY+ ++ G+ K D
Sbjct: 512 EEGVKHNLKTYSMMINGFVKLKD 534
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 23/208 (11%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
LDV DI Y ALL+ + S ++ ++ I N Y LI + +
Sbjct: 690 LDV--DIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDG------WAR 741
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G++ A +++ M+ + + + I S+A DM A + M G++P+ +T
Sbjct: 742 RGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKT 801
Query: 197 YTKLMCGYAKHGDMDSI-----KTKIPSLKPQSELFLCFSFQLTNLLILVS-SDMASAEG 250
YT L+ G+A+ + + K +KP ++ C LT+LL S ++ G
Sbjct: 802 YTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCL---LTSLLSRASIAEAYIYSG 858
Query: 251 ILTM---MSQAGL---EPSAQTYTKLMC 272
++T+ M +AGL +A ++K +C
Sbjct: 859 VMTICKEMVEAGLIVDMGTAVHWSKCLC 886
Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 92/246 (37%), Gaps = 43/246 (17%)
Query: 337 MSQAGLEPSAQTYTKLMCGYAKHGDMD---SIRRLLAQNGSSLVNGDYLDIIHALAVSGH 393
M G+ P+++ YT L+ YA DMD S R + + G + Y I+ + +GH
Sbjct: 335 MRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGH 394
Query: 394 GEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGF 453
E D Y D A I+ +N +I+ ++ N+ +
Sbjct: 395 AEAAD-----------YWFDEAKRIHKTLNASIYG---KIIYAHCQTCNMERAEA----- 435
Query: 454 LVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVG---- 509
LVR M + G+ DA IYH + G Y +V + + G
Sbjct: 436 LVREM---EEEGI----DAPIAIYHTMMDG-----YTMVADEKKGLVVFKRLKECGFTPT 483
Query: 510 ----GFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETF 565
G L+ K + I K L V + +E + +++I V +D+ A F
Sbjct: 484 VVTYGCLINLYTKVGK-ISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVF 542
Query: 566 EYCVNQ 571
E V +
Sbjct: 543 EDMVKE 548
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/385 (22%), Positives = 155/385 (40%), Gaps = 41/385 (10%)
Query: 76 ELDVPLDISHYNALL-RVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKY 134
E + D+ Y+A++ R+ D H+ + F LE +GI PN TY +I +
Sbjct: 289 ETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE-KGIAPNVFTYNCMIDG------F 341
Query: 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA 194
C G A ++L M ++ FNALI + + AE + M + P
Sbjct: 342 CSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDT 401
Query: 195 QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTM 254
TY ++ G+ KH D K + + +F + + + +L
Sbjct: 402 VTYNSMIYGFCKHNRFDDAKHMFDLMASPDVV----TFNTIIDVYCRAKRVDEGMQLLRE 457
Query: 255 MSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEY 314
+S+ GL + TY L+ G+ + ++++ + L + S V D + L E
Sbjct: 458 ISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEK 517
Query: 315 IDEVSAIVCFV------------NICFHWL-EGPMMSQA----------GLEPSAQTYTK 351
++E + + NI H + +G + +A G+EP QTY
Sbjct: 518 LEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNV 577
Query: 352 LM---CGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGV 408
++ CG + D + + + NG N Y +I +G + E+IS+++
Sbjct: 578 MISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSN- 636
Query: 409 GYSADA--ANHIYHLINKGQIDAAY 431
G+S DA + LI G++D ++
Sbjct: 637 GFSGDAFTIKMVADLITDGRLDKSF 661
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 148/371 (39%), Gaps = 43/371 (11%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
YN ++ Y+ L ++ G+ N+VTY L+ S ++G + A K
Sbjct: 262 YNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELS------VKNGKMSDAEK 315
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+ + MR++ V+ +LI + + +M A + +++ GL PS+ TY L+ G
Sbjct: 316 LFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVC 375
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI---LVSSDMASAEGILTMMSQAGLEP 262
K G+M + + + ++ + F N LI + A I +M Q G +
Sbjct: 376 KVGEMGAAEILMNEMQSKGVNITQVVF---NTLIDGYCRKGMVDEASMIYDVMEQKGFQA 432
Query: 263 SAQTYTKLMCGYAKHGDMDSVRRLL---AQSGSSLVNGDYLDIIHALAVSGHGEYIDEVS 319
T + + + D ++ L + G L Y ++I G+ E
Sbjct: 433 DVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVE-----E 487
Query: 320 AIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ---NGSSL 376
A FV MS G++P+A TY ++ Y K G + R+L A NG
Sbjct: 488 AKRLFVE----------MSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDP 537
Query: 377 VNGDYLDIIHALAVSGHGEYIDEIISKI------QPGVGYSADAANHIYHLINKGQIDAA 430
+ Y +IH ++ + + + S++ Q V Y+ I L G+ D A
Sbjct: 538 DSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTV----MISGLSKAGKSDEA 593
Query: 431 YRIVNTLARSA 441
+ + + + R
Sbjct: 594 FGLYDEMKRKG 604
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDG 138
V L Y L+ VY + ++ S+G++PN +TY + +I YC+ G
Sbjct: 465 VKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITY------NVMIYAYCKQG 518
Query: 139 NIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198
I+ A K+ M + +LI+G A+++ A + + M GL+ ++ TYT
Sbjct: 519 KIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYT 578
Query: 199 KLMCGYAKHGDMD 211
++ G +K G D
Sbjct: 579 VMISGLSKAGKSD 591
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 44/205 (21%)
Query: 105 FLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164
+L ++ G++ + V+Y + LI YC++GN+E A ++ M K + +N
Sbjct: 456 WLFRMMEGGVKLSTVSY------TNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNV 509
Query: 165 LIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS 224
+IY + + + A + M G++P + TYT L+ HG+
Sbjct: 510 MIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLI-----HGE--------------- 549
Query: 225 ELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284
++ ++ A + + M GL+ ++ TYT ++ G +K G D
Sbjct: 550 ---------------CIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAF 594
Query: 285 RL---LAQSGSSLVNGDYLDIIHAL 306
L + + G ++ N Y +I ++
Sbjct: 595 GLYDEMKRKGYTIDNKVYTALIGSM 619
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/407 (18%), Positives = 150/407 (36%), Gaps = 79/407 (19%)
Query: 89 LLRVYLDN---EHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
+ RVY+DN E D++ K +G+ + + + +K + I+ +
Sbjct: 160 VFRVYVDNGMFEEGLRVFDYMVK---KGLSIDERSCIVFLVAAK------KRRRIDLCLE 210
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
I M D I+ ++ G + ++ ++ ++ S G++P A TY ++ Y
Sbjct: 211 IFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYV 270
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQ 265
K D ++ + +K ++ ++ L L + + M+ AE + M + G+E
Sbjct: 271 KQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVH 330
Query: 266 TYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFV 325
YT L+ + G+M L +
Sbjct: 331 VYTSLISWNCRKGNMKRAFLLFDE------------------------------------ 354
Query: 326 NICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDII 385
+++ GL PS+ TY L+ G K G+M + L+ + S VN ++
Sbjct: 355 -----------LTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVN--ITQVV 401
Query: 386 HALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANING 445
+ G+ + G+ D A+ IY ++ + A NT+A N
Sbjct: 402 FNTLIDGY----------CRKGM---VDEASMIYDVMEQKGFQADVFTCNTIASCFNRLK 448
Query: 446 EQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINK-GQIDAAYRI 491
+L R M + GV S + ++ + K G ++ A R+
Sbjct: 449 RYDEAKQWLFRMM----EGGVKLSTVSYTNLIDVYCKEGNVEEAKRL 491
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 12/207 (5%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
Y A + Y++ S ++ ++ G+ PN+V + LI++YC+ G + A
Sbjct: 525 YGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC------TGLINEYCKKGKVIEACS 578
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
M D+ + L+ G + + + AE I M G+ P +Y L+ G++
Sbjct: 579 AYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFS 638
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI---LVSSDMASAEGILTMMSQAGLEP 262
K G+M + + + L + + N+L+ S ++ A+ +L MS GL P
Sbjct: 639 KLGNMQKASSIFDEMVEEG---LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695
Query: 263 SAQTYTKLMCGYAKHGDMDSVRRLLAQ 289
+A TY ++ GY K GD+ RL +
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDE 722
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 114/271 (42%), Gaps = 24/271 (8%)
Query: 104 DFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163
+ + ++ + G PN V Y + LI + Q+ A ++L+ M+++ +N
Sbjct: 438 NIVKEMIASGCRPNVVIY------TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYN 491
Query: 164 ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223
+LI G S+A M A L M + GL+P+A TY + GY + + S + ++
Sbjct: 492 SLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMREC 551
Query: 224 SEL---FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 280
L LC L N + + +M+ Q G+ A+TYT LM G K+ +
Sbjct: 552 GVLPNKVLCTG--LINEYCKKGKVIEACSAYRSMVDQ-GILGDAKTYTVLMNGLFKNDKV 608
Query: 281 DSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQA 340
D + + + D + + ++G + + A F M +
Sbjct: 609 DDAEEIFREMRGKGIAPDVFS--YGVLINGFSKLGNMQKASSIF----------DEMVEE 656
Query: 341 GLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
GL P+ Y L+ G+ + G+++ + LL +
Sbjct: 657 GLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 121/294 (41%), Gaps = 45/294 (15%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISN-SKLISKYCQDGNI 140
D Y L+ N+ + ++ +GI P+ +Y LI+ SKL GN+
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKL-------GNM 643
Query: 141 EGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL 200
+ A+ I + M ++ + ++N L+ G ++ ++ A+ +L MS GL P+A TY +
Sbjct: 644 QKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTI 703
Query: 201 MCGYAKHGDMDSI-----KTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMM 255
+ GY K GD+ + K+ L P S ++ L+ + E +T+
Sbjct: 704 IDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVY--------TTLVDGCCRLNDVERAITIF 755
Query: 256 --SQAGLEPSAQTYTKLMCGYAKHG----DMDSVRRLLAQSGSSLVNGD---YLDIIHAL 306
++ G S + L+ K G + + RL+ S + Y +I L
Sbjct: 756 GTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYL 815
Query: 307 AVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG 360
G+ E E+ FH M A L P+ TYT L+ GY K G
Sbjct: 816 CKEGNLEAAKEL----------FH-----QMQNANLMPTVITYTSLLNGYDKMG 854
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 131/344 (38%), Gaps = 58/344 (16%)
Query: 67 EDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLIS 126
E+ F G+ P D+ Y L+ + + + ++ +G+ PN + Y L+
Sbjct: 612 EEIFREMRGKGIAP-DVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670
Query: 127 NSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMS 186
+C+ G IE A ++L+ M K + + +I G+ ++ D+A A + M
Sbjct: 671 G------FCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK 724
Query: 187 QAGLEPSAQTYTKLMCGYAKHGDMDSIKTKI--------PSLKPQSELF-LCFSFQLTNL 237
GL P + YT L+ G + D++ T S P + L F F T L
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTEL 784
Query: 238 LILV-----------------------------SSDMASAEGILTMMSQAGLEPSAQTYT 268
V ++ +A+ + M A L P+ TYT
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYT 844
Query: 269 KLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGEYIDEVSAIVCFV 325
L+ GY K G + + ++ ++ + D Y II+A G + + V
Sbjct: 845 SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGM------TTKALVLV 898
Query: 326 NICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLL 369
+ F G + S T L+ G+AK G+M+ +++
Sbjct: 899 DQMF----AKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVM 938
Score = 40.4 bits (93), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 101/283 (35%), Gaps = 64/283 (22%)
Query: 112 QGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ 171
+G+ P + TY LI C+ +E A +L M + ++ LI G +
Sbjct: 271 KGLVPLKYTYDVLIDG------LCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLK 324
Query: 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFS 231
+ +A+G++ M G+ Y +C +K G M+
Sbjct: 325 GRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVME-------------------- 364
Query: 232 FQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ-S 290
A+ + M +GL P AQ Y L+ GY + ++ LL +
Sbjct: 365 ---------------KAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMK 409
Query: 291 GSSLVNGDYL--DIIHALAVSG--HGEY--IDEVSAIVCFVNICFH------WLEGPM-- 336
++V Y ++ + SG G Y + E+ A C N+ + +L+
Sbjct: 410 KRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFG 469
Query: 337 --------MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
M + G+ P Y L+ G +K MD R L +
Sbjct: 470 DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVE 512
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 150/359 (41%), Gaps = 28/359 (7%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L +P ++ N LL + FL K+ G EP+ VT+ L++ +C+
Sbjct: 110 LGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNG------FCR 163
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
+ A + + M + + ++N +I G ++ + +A +L M + G+ P T
Sbjct: 164 GDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVT 223
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL-CFSFQLTNLLILVSSDMASAEGILTMM 255
Y L+ G G S T++ S + E++ F+F + ++ AE M
Sbjct: 224 YNSLISGLCSSGRW-SDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEM 282
Query: 256 SQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDII-HALAVSGHGEY 314
+ L+P TY+ L+ G + +D + G + G + D++ +++ ++G+ +
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMF---GFMVSKGCFPDVVTYSILINGYCKS 339
Query: 315 IDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDM---DSIRRLLAQ 371
+ F MSQ G+ + TYT L+ GY + G + + I R +
Sbjct: 340 KKVEHGMKLFCE----------MSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVF 389
Query: 372 NGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAA 430
G Y ++H L +G E I++ +Q G AD Y++I +G A
Sbjct: 390 CGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKN-GMDADIVT--YNIIIRGMCKAG 445
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 40/318 (12%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
YN ++ ++ + D L ++E GI P+ VTY LIS C G AT+
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISG------LCSSGRWSDATR 242
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
++ M + FNALI + ++ AE M + L+P TY+ L+ G
Sbjct: 243 MVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLC 302
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL----VSSDMASAEGILTMMSQAGLE 261
+ +D + + + CF +T +++ S + + MSQ G+
Sbjct: 303 MYSRLDEAEEMFGFMVSKG----CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVV 358
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSG-------- 310
+ TYT L+ GY + G ++ + + V+ + Y ++H L +G
Sbjct: 359 RNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVI 418
Query: 311 ------HGEYIDEVSAIVCFVNICF------HWLEGPMMSQAGLEPSAQTYTKLMCGYAK 358
+G D V+ + +C W ++ GL P TYT +M G K
Sbjct: 419 LADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYK 478
Query: 359 HG---DMDSIRRLLAQNG 373
G + D++ R + ++G
Sbjct: 479 KGLRREADALFRKMKEDG 496
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 152/368 (41%), Gaps = 50/368 (13%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
Y L+ +H S ++K+E G++P+ + + +I+ S + GN++ A K
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS------ESGNLDQAMK 410
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMM-SQAGLEPSAQTYTKLM--- 201
I E M++ + FN LI G+ + + + +L MM L+P+ +T L+
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAW 470
Query: 202 CGYAKHGDMDSIKTKIPS--LKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAG 259
C K + +I K+ S +KP F L + S + + I+ M
Sbjct: 471 CNQRKIEEAWNIVYKMQSYGVKPDVVTF----NTLAKAYARIGSTCTAEDMIIPRMLHNK 526
Query: 260 LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG-----------SSLVNGDYLDIIHALAV 308
++P+ +T ++ GY + G M+ R + +SL+ G +L+I +
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKG-FLNIND---M 582
Query: 309 SGHGEYIDEVSA------IVCFVNICFHWLE-GPM---------MSQAGLEPSAQTYTKL 352
G GE +D + +V F + W G M M + G++P ++ L
Sbjct: 583 DGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSIL 642
Query: 353 MCGYAKHGDMDSIRRLLAQNGSSLVNGD---YLDIIHALAVSGHGEYIDEIISKIQPGVG 409
GYA+ G+ + ++L Q V + Y II +G + ++ K+ VG
Sbjct: 643 AKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVG 702
Query: 410 YSADAANH 417
S + +
Sbjct: 703 LSPNLTTY 710
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 112/281 (39%), Gaps = 53/281 (18%)
Query: 79 VPLDISHYNALLRVYLDNEHTFSPTDFL-AKLESQGIEPNRVTYQQLISNSKLISKYCQD 137
V D+ +N L + Y T + D + ++ ++PN T +++ YC++
Sbjct: 491 VKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNG------YCEE 544
Query: 138 GNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTY 197
G +E A + M++ + VFN+LI G NDM ++ +M + G++P T+
Sbjct: 545 GKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTF 604
Query: 198 TKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQ 257
+ LM ++ G DM E I T M +
Sbjct: 605 STLMNAWSSVG-----------------------------------DMKRCEEIYTDMLE 629
Query: 258 AGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDE 317
G++P ++ L GYA+ G+ + ++L Q V + +I+ +SG +
Sbjct: 630 GGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNV--VIYTQIISGWCSAGEM 687
Query: 318 VSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAK 358
A+ + +C GL P+ TY L+ G+ +
Sbjct: 688 KKAMQVYKKMC---------GIVGLSPNLTTYETLIWGFGE 719
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 70 FSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSK 129
F EL V ++ +N+L++ +L+ + + +E G++P+ VT+ S
Sbjct: 553 FFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTF------ST 606
Query: 130 LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG 189
L++ + G+++ +I M + F+ L G+++A + AE IL M + G
Sbjct: 607 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 666
Query: 190 LEPSAQTYTKLMCGYAKHGDM 210
+ P+ YT+++ G+ G+M
Sbjct: 667 VRPNVVIYTQIISGWCSAGEM 687
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 178 AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSI-----KTKIPSLKPQSELFLCFSF 232
A I + + G +PS TYT L+ + S+ K + LKP + LF
Sbjct: 338 AHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILF----- 392
Query: 233 QLTNLLILVSSD---MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287
N +I SS+ + A I M ++G +P+A T+ L+ GY K G ++ RLL
Sbjct: 393 ---NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL 447
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 248 AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYL---DIIH 304
A I + + G +PS TYT L+ + S+ L+++ + + D + II+
Sbjct: 338 AHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIIN 397
Query: 305 ALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDS 364
A + SG+ +D+ I M ++G +P+A T+ L+ GY K G ++
Sbjct: 398 ASSESGN---LDQAMKIF------------EKMKESGCKPTASTFNTLIKGYGKIGKLEE 442
Query: 365 IRRLL 369
RLL
Sbjct: 443 SSRLL 447
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 134/330 (40%), Gaps = 35/330 (10%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
Y+ ++ H + ++E++G+ PN +TY S LIS C A++
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY------SSLISCLCNYERWSDASR 316
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+L M ++ + FNALI + + AE + M + ++P TY+ L+ G+
Sbjct: 317 LLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 376
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLT-NLLI---LVSSDMASAEGILTMMSQAGLE 261
H +D K + + CF +T N LI + + + MSQ GL
Sbjct: 377 MHDRLDEAKHMFELMISKD----CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLV 432
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGEYIDEV 318
+ TYT L+ G+ + D D+ + + Q S V+ + Y ++ L +G E
Sbjct: 433 GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE----- 487
Query: 319 SAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVN 378
A+V F + ++ +EP+ TY ++ G K G ++ L V
Sbjct: 488 KAMVVF----------EYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 537
Query: 379 GD---YLDIIHALAVSGHGEYIDEIISKIQ 405
D Y +I G E D + K++
Sbjct: 538 PDVIIYNTMISGFCRKGLKEEADALFRKMR 567
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 130/310 (41%), Gaps = 38/310 (12%)
Query: 72 VHTGELDVPLDISH----YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISN 127
+ GE L ISH YN L+ + L K+ G EP+ VT
Sbjct: 105 ISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTL------ 158
Query: 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ 187
S L++ YC I A +++ M + + F LI+G N + A ++ M Q
Sbjct: 159 SSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ 218
Query: 188 AGLEPSAQTYTKLMCGYAKHGDMD---SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSD 244
G +P+ TY ++ G K GD+D ++ K+ + K ++ + + +S + +L D
Sbjct: 219 RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI-YSTVIDSLCKYRHED 277
Query: 245 MASAEGILTMMSQAGLEPSAQTYTKL---MCGYAKHGDMDSVRRLLAQSGSSLVNGDYLD 301
A + T M G+ P+ TY+ L +C Y + D RLL+ +N + +
Sbjct: 278 --DALNLFTEMENKGVRPNVITYSSLISCLCNYERWSD---ASRLLSDMIERKINPNVV- 331
Query: 302 IIHAL--AVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKH 359
+AL A G+ ++ L M+ ++ ++P TY+ L+ G+ H
Sbjct: 332 TFNALIDAFVKEGKLVEA------------EKLYDEMIKRS-IDPDIFTYSSLINGFCMH 378
Query: 360 GDMDSIRRLL 369
+D + +
Sbjct: 379 DRLDEAKHMF 388
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 89/213 (41%), Gaps = 9/213 (4%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
DI Y++L+ + ++ + S+ PN VTY LI+ +C+ I+
Sbjct: 364 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING------FCKAKRID 417
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
++ M + + + LI+G QA D +A+ + M G+ P+ TY L+
Sbjct: 418 EGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLL 477
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE 261
G K+G ++ L+ +++ + + + + + +S G++
Sbjct: 478 DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 537
Query: 262 PSAQTYTKLMCGYAKHG---DMDSVRRLLAQSG 291
P Y ++ G+ + G + D++ R + + G
Sbjct: 538 PDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 97/248 (39%), Gaps = 23/248 (9%)
Query: 153 KTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD- 211
+ F G + ++ + + A G+ M ++ PS + KL+ AK D
Sbjct: 44 RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDL 103
Query: 212 --SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTK 269
S+ K+ L L+ ++ + S ++ A +L M + G EPS T +
Sbjct: 104 VISLGEKMQRLGISHNLY---TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS 160
Query: 270 LMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYI-DEVSAIVCFVNIC 328
L+ GY + L+ Q +V Y HG ++ ++ S V V+
Sbjct: 161 LLNGYCHGKRISDAVALVDQ----MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVD-- 214
Query: 329 FHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD---YLDII 385
M Q G +P+ TY ++ G K GD+D LL + ++ + + Y +I
Sbjct: 215 -------RMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVI 267
Query: 386 HALAVSGH 393
+L H
Sbjct: 268 DSLCKYRH 275
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 152/359 (42%), Gaps = 67/359 (18%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+ ++AL+ V++ + ++ ++GI P+ +TY LI +C++ +
Sbjct: 314 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDG------FCKENCLH 367
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A ++ + M K ++ LI + +A + + +S GL P+ TY L+
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE 261
G+ + G +++ K ELF M G+
Sbjct: 428 LGFCQSGKLNAAK----------ELF-------------------------QEMVSRGVP 452
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRL---LAQSGSSLVNGDYLDIIHALAVSGHGEYIDEV 318
PS TY L+ G +G+++ + + +S +L G Y IIH + + +D+
Sbjct: 453 PSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC---NASKVDDA 509
Query: 319 SAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDM---DSIRRLLAQNGSS 375
++ C +S G++P TY ++ G K G + D + R + ++G +
Sbjct: 510 WSLFC------------SLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCT 557
Query: 376 LVNGDYLDIIHA-LAVSGHGEYIDEIISKIQPGVGYSADAA--NHIYHLINKGQIDAAY 431
+ Y +I A L SG + E+I +++ G+SAD++ + +++ ++D ++
Sbjct: 558 PDDFTYNILIRAHLGGSGLISSV-ELIEEMKV-CGFSADSSTIKMVIDMLSDRRLDKSF 614
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/342 (20%), Positives = 118/342 (34%), Gaps = 105/342 (30%)
Query: 108 KLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIY 167
++E +GI+ + VTY S LI C DG + K+L M + F+ALI
Sbjct: 270 EMEMKGIKADVVTY------SSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALID 323
Query: 168 GHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF 227
+ + A+ + M G+ P TY L+ G+ K L +++F
Sbjct: 324 VFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN----------CLHEANQMF 373
Query: 228 LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287
+M G EP TY+ L+ Y K +D RL
Sbjct: 374 -------------------------DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLF 408
Query: 288 AQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQ 347
+ +S GL P+
Sbjct: 409 RE-----------------------------------------------ISSKGLIPNTI 421
Query: 348 TYTKLMCGYAKHGDMDSIRRLLAQNGS-----SLVNGDYLDIIHALAVSGHGEYIDEIIS 402
TY L+ G+ + G +++ + L + S S+V Y ++ L +G EI
Sbjct: 422 TYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVT--YGILLDGLCDNGELNKALEIFE 479
Query: 403 KIQP-----GVGYSADAANHIYH-LINKGQIDAAYRIVNTLA 438
K+Q G+G N I H + N ++D A+ + +L+
Sbjct: 480 KMQKSRMTLGIG----IYNIIIHGMCNASKVDDAWSLFCSLS 517
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Query: 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDG 138
+ L I YN ++ + L +G++P+ VTY +I C+ G
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGG------LCKKG 539
Query: 139 NIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
++ A + M++ + +N LI H + + S+ ++ M G + T
Sbjct: 540 SLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSST 597
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 114/272 (41%), Gaps = 45/272 (16%)
Query: 103 TDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162
T L KL+ GI Q +S S +I +C+ G E A K++ R + + V+
Sbjct: 326 TSVLFKLKLFGIS------QDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRP---NIFVY 376
Query: 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS----IKTKIP 218
++ + DM A I + + GL P YT ++ GY G D +
Sbjct: 377 SSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLK 436
Query: 219 SLKPQSELFLCFSFQLTNLLILVSS-----DMASAEGILTMMSQAGLEPSAQTYTKLMCG 273
S P S LT IL+ + ++ AE + M GL+ TY LM G
Sbjct: 437 SGNPPS---------LTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHG 487
Query: 274 YAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGEYIDEVSAIVCFVNICFH 330
Y K ++ V L+ + S+ ++ D Y +IH++ V G YIDE + I+
Sbjct: 488 YGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRG---YIDEANEII-------- 536
Query: 331 WLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDM 362
+ + G PS +T ++ G++K GD
Sbjct: 537 ----SELIRRGFVPSTLAFTDVIGGFSKRGDF 564
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 29/309 (9%)
Query: 109 LESQGIEPNRVTYQQLISNSK---------LISKYCQDGNIEGATKILEFMRDKTFPISE 159
L G+E R + ++S + I KYC DG + ++L M+
Sbjct: 247 LRVHGLELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDI 306
Query: 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPS 219
F I +A + A +L + G+ + + + ++ G+ K G + I S
Sbjct: 307 VAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHS 366
Query: 220 LKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 279
+ + +F+ SF L+N I + DM A I + + GL P YT ++ GY G
Sbjct: 367 FRLRPNIFVYSSF-LSN--ICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGR 423
Query: 280 MDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVS-AIVCFVNICFHWLEGPMMS 338
D + G+ L +G+ + + + G +S A F N M
Sbjct: 424 TD---KAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRN----------MK 470
Query: 339 QAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD---YLDIIHALAVSGHGE 395
GL+ TY LM GY K ++ + L+ + S+ ++ D Y +IH++ V G+ +
Sbjct: 471 TEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYID 530
Query: 396 YIDEIISKI 404
+EIIS++
Sbjct: 531 EANEIISEL 539
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 101/264 (38%), Gaps = 30/264 (11%)
Query: 113 GIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA 172
G+ P+ V Y + +I YC G + A + + P S LI S+
Sbjct: 403 GLLPDCVCY------TTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRF 456
Query: 173 NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSF 232
++ AE + M GL+ TY LM GY K ++ + I ++ +
Sbjct: 457 GSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAG---ISPDV 513
Query: 233 QLTNLLI---LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289
N+LI +V + A I++ + + G PS +T ++ G++K GD L
Sbjct: 514 ATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFY 573
Query: 290 SGSSLVNGDYLD---IIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSA 346
+ D + ++H + E AIV F + AGL+P
Sbjct: 574 MADLRMKPDVVTCSALLHGYCKAQRME-----KAIVLF----------NKLLDAGLKPDV 618
Query: 347 QTYTKLMCGYAKHGDMDSIRRLLA 370
Y L+ GY GD++ L+
Sbjct: 619 VLYNTLIHGYCSVGDIEKACELIG 642
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 29/162 (17%)
Query: 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISN----------- 127
+ LD+ YN L+ Y + + ++ S GI P+ TY LI +
Sbjct: 474 LKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEAN 533
Query: 128 ---SKLISK---------------YCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGH 169
S+LI + + + G+ + A + +M D +AL++G+
Sbjct: 534 EIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGY 593
Query: 170 SQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211
+A M A + + AGL+P Y L+ GY GD++
Sbjct: 594 CKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIE 635
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 124 LISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILT 183
+++ S L+ YC+ +E A + + D ++N LI+G+ D+ A ++
Sbjct: 583 VVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIG 642
Query: 184 MMSQAGLEPSAQTYTKLMCG 203
+M Q G+ P+ T+ L+ G
Sbjct: 643 LMVQRGMLPNESTHHALVLG 662
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 109 LESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYG 168
++ + PN VT+ + LI YC+ G++E A + + MR ++ + ALI G
Sbjct: 189 MKRDALSPNVVTF------TCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDG 242
Query: 169 HSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228
+ +M AE + + M + +EP++ YT ++ G+ + GD D+ + + Q
Sbjct: 243 FCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQG---- 298
Query: 229 CFSFQLTNLLILVS-----SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSV 283
+T +++S + A I+ M ++ L P +T +M Y K G M +
Sbjct: 299 -MRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAA 357
Query: 284 RRL---LAQSG--------SSLVNGDYLD-IIHALAVSGHGEYIDEVSAIVCFVNIC--- 328
+ L + G S++++G + +H V E ++V V +C
Sbjct: 358 VNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKANDVMYTVLIDALCKEG 417
Query: 329 -FHWLEG--PMMSQAGLEPSAQTYTKLMCGYAKHG---DMDSIRRLLAQNGSSLVNGDYL 382
F +E +S+AGL P YT + G K G D ++ + Q G L Y
Sbjct: 418 DFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYT 477
Query: 383 DIIHALAVSG 392
+I+ LA G
Sbjct: 478 TLIYGLASKG 487
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 113/291 (38%), Gaps = 37/291 (12%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
Y ++ + + + FLAK+ +QG+ + Y +IS C +G ++ AT+
Sbjct: 271 YTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISG------LCGNGKLKEATE 324
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
I+E M +F ++ + ++ M +A + + + G EP + ++ G A
Sbjct: 325 IVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIA 384
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQ 265
K+G + K ++ L D E + + +S+AGL P
Sbjct: 385 KNGQLHEAIVYFCIEKANDVMYTVLIDALCK-----EGDFIEVERLFSKISEAGLVPDKF 439
Query: 266 TYTKLMCGYAKHGDMDSVRRL---LAQSGSSLVNGDYLDIIHALAVSG----HGEYIDEV 318
YT + G K G++ +L + Q G L Y +I+ LA G + DE
Sbjct: 440 MYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDE- 498
Query: 319 SAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLL 369
M +G+ P + + L+ Y K G+M + LL
Sbjct: 499 ------------------MLNSGISPDSAVFDLLIRAYEKEGNMAAASDLL 531
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 120/313 (38%), Gaps = 68/313 (21%)
Query: 116 PNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDM 175
PN VTY S I +C+ G ++ A K M+ + F LI G+ +A D+
Sbjct: 161 PNVVTY------STWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDL 214
Query: 176 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLT 235
A + M + + + TYT L+ G+ K G+M
Sbjct: 215 EVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQ------------------------ 250
Query: 236 NLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ---SGS 292
AE + + M + +EP++ YT ++ G+ + GD D+ + LA+ G
Sbjct: 251 -----------RAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGM 299
Query: 293 SLVNGDYLDIIHALAVSGH----------GEYIDEVSAIVCFVNICFHWLEGPMMSQA-- 340
L Y II L +G E D V +V F + + + M A
Sbjct: 300 RLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVN 359
Query: 341 --------GLEPSAQTYTKLMCGYAKHGDM-DSIRRLLAQNGSSLVNGDYLDIIHALAVS 391
G EP + ++ G AK+G + ++I + + ++ Y +I AL
Sbjct: 360 MYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKANDVM---YTVLIDALCKE 416
Query: 392 GHGEYIDEIISKI 404
G ++ + SKI
Sbjct: 417 GDFIEVERLFSKI 429
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 140/345 (40%), Gaps = 66/345 (19%)
Query: 105 FLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164
FL++L P+ T + I +LI+ C G + + K L ++ + + FN+
Sbjct: 8 FLSRLRKSSNLPDPFTCNKHIH--QLINSNC--GIL--SLKFLAYLVSRGYTPHRSSFNS 61
Query: 165 LIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS 224
++ + + AE I+ M + G EP +Y L+ G+ ++GD+ S + SL+ S
Sbjct: 62 VVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRA-S 120
Query: 225 ELFLC-------------FS--------FQLTNLLILVSS----------DMASAEGILT 253
F+C FS F +++ S D G L
Sbjct: 121 HGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQ 180
Query: 254 M-------MSQAGLEPSAQTYTKLMCGYAKHGDMD---SVRRLLAQSGSSLVNGDYLDII 303
+ M + L P+ T+T L+ GY K GD++ S+ + + + SL Y +I
Sbjct: 181 LALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALI 240
Query: 304 HALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMD 363
G + +E+ + M + +EP++ YT ++ G+ + GD D
Sbjct: 241 DGFCKKGEMQRAEEMYS---------------RMVEDRVEPNSLVYTTIIDGFFQRGDSD 285
Query: 364 SIRRLLAQ---NGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQ 405
+ + LA+ G L Y II L +G + EI+ ++
Sbjct: 286 NAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDME 330
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 17/213 (7%)
Query: 78 DVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQD 137
D+ D+ + ++ Y + + + KL +G EP+ +++ S +I ++
Sbjct: 333 DLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPD------VVALSTMIDGIAKN 386
Query: 138 GNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTY 197
G + A I+ F +K ++ ++ LI + D E + + +S+AGL P Y
Sbjct: 387 GQLHEA--IVYFCIEKA---NDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMY 441
Query: 198 TKLMCGYAKHGDM-DSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSD--MASAEGILTM 254
T + G K G++ D+ K K ++ E L T L+ ++S M A +
Sbjct: 442 TSWIAGLCKQGNLVDAFKLKTRMVQ---EGLLLDLLAYTTLIYGLASKGLMVEARQVFDE 498
Query: 255 MSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287
M +G+ P + + L+ Y K G+M + LL
Sbjct: 499 MLNSGISPDSAVFDLLIRAYEKEGNMAAASDLL 531
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 108/284 (38%), Gaps = 36/284 (12%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
YNALL+ Y+ ++++E +G+ P+ TY S LI Y G E A
Sbjct: 342 YNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTY------SLLIDAYVNAGRWESARI 395
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+L+ M + VF+ L+ G + +L M G++P Q Y ++ +
Sbjct: 396 VLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFG 455
Query: 206 KHGDMDSIKTKI---------PSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
K +D T P + L C +++ AE + M
Sbjct: 456 KFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIV---------AEEMFEAME 506
Query: 257 QAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYID 316
+ G P A TY ++ Y D ++RLL + S + + + H V +G+
Sbjct: 507 RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV--VTHTTLVDVYGKSGR 564
Query: 317 EVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG 360
AI C M GL+PS+ Y L+ YA+ G
Sbjct: 565 FNDAIECLEE----------MKSVGLKPSSTMYNALINAYAQRG 598
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 41/186 (22%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
YN ++ Y D E L K++SQGI PN VT+ + L+ Y + G A +
Sbjct: 517 YNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTH------TTLVDVYGKSGRFNDAIE 570
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
LE M+ S ++NALI ++Q A +M+ GL+PS L+ +
Sbjct: 571 CLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFG 630
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQ 265
+ + +E F +L M + G++P
Sbjct: 631 ED-------------RRDAEAF----------------------AVLQYMKENGVKPDVV 655
Query: 266 TYTKLM 271
TYT LM
Sbjct: 656 TYTTLM 661
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/306 (17%), Positives = 118/306 (38%), Gaps = 43/306 (14%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY----QQLISNSK------------ 129
YNAL+ N + +AK+ G + + V Y Q L ++K
Sbjct: 200 YNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKE 259
Query: 130 ---------------LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAND 174
+I + + G+ A ++L + ++I + +
Sbjct: 260 IERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGR 319
Query: 175 MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQL 234
AE + + Q+G++P + Y L+ GY K G + ++ + ++ + ++ L
Sbjct: 320 TLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSL 379
Query: 235 TNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSL 294
+ + SA +L M ++P++ +++L+ G+ G+ ++L + S
Sbjct: 380 LIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIG 439
Query: 295 VNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMC 354
V D + + + G++ A+ F M+S+ G+EP T+ L+
Sbjct: 440 VKPDRQ--FYNVVIDTFGKFNCLDHAMTTF---------DRMLSE-GIEPDRVTWNTLID 487
Query: 355 GYAKHG 360
+ KHG
Sbjct: 488 CHCKHG 493
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 89/245 (36%), Gaps = 12/245 (4%)
Query: 130 LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG 189
+IS G A + E +R +NAL+ G+ + + AE +++ M + G
Sbjct: 310 IISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRG 369
Query: 190 LEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAE 249
+ P TY+ L+ Y G +S + + ++ F F +
Sbjct: 370 VSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTF 429
Query: 250 GILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVS 309
+L M G++P Q Y ++ + K +D + S + D + +
Sbjct: 430 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD--RVTWNTLID 487
Query: 310 GHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLL 369
H ++ + A F M + G P A TY ++ Y D ++RLL
Sbjct: 488 CHCKHGRHIVAEEMF----------EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLL 537
Query: 370 AQNGS 374
+ S
Sbjct: 538 GKMKS 542
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 94/253 (37%), Gaps = 54/253 (21%)
Query: 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSL 220
+NALI ++ ND+ A ++ M Q G + Y+ ++ + +DS+
Sbjct: 199 TYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSV------- 251
Query: 221 KPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 280
L L + D LE Q ++ G+AK GD
Sbjct: 252 ------------MLLRLYKEIERD--------------KLELDVQLVNDIIMGFAKSGDP 285
Query: 281 DSVRRLLAQ---SGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMM 337
+LL +G S + II ALA SG + A F +
Sbjct: 286 SKALQLLGMAQATGLSAKTATLVSIISALADSGR-----TLEAEALFEE----------L 330
Query: 338 SQAGLEPSAQTYTKLMCGYAKHG---DMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHG 394
Q+G++P + Y L+ GY K G D +S+ + + G S Y +I A +G
Sbjct: 331 RQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRW 390
Query: 395 EYIDEIISKIQPG 407
E ++ +++ G
Sbjct: 391 ESARIVLKEMEAG 403
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 138/361 (38%), Gaps = 72/361 (19%)
Query: 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEG 142
+ + N +L+V D+ + + GI P +T+ ++ + + G++E
Sbjct: 203 VRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSC------FKAGDLER 256
Query: 143 ATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMC 202
KI M+ + SE +N LI G S+ M A M ++G + ++ L+
Sbjct: 257 VDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIE 316
Query: 203 GYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEP 262
GY K G D A G+ M AG+ P
Sbjct: 317 GYCKQGLFDD-----------------------------------AWGVTDEMLNAGIYP 341
Query: 263 SAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIV 322
+ TY +C G +D R LL+ + V Y ++H G V A +
Sbjct: 342 TTSTYNIYICALCDFGRIDDARELLSSMAAPDVVS-YNTLMHGYIKMGKF-----VEASL 395
Query: 323 CFVNICFHWLEGPMMSQAG-LEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD- 380
F ++ +AG + PS TY L+ G + G+++ +RL + + L+ D
Sbjct: 396 LFDDL-----------RAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDV 444
Query: 381 --YLDIIHALAVSGH----GEYIDEIISK-IQP-GVGYSADAANHIYHLINKGQIDAAYR 432
Y ++ +G+ E DE++ K I+P G Y+ A + G D A+R
Sbjct: 445 ITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGE----LRLGDSDKAFR 500
Query: 433 I 433
+
Sbjct: 501 L 501
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 101/485 (20%), Positives = 175/485 (36%), Gaps = 60/485 (12%)
Query: 108 KLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIY 167
+++ + IE + VTY LI+ + ++G +E A + MR F ++ FN LI
Sbjct: 263 EMKRRNIEFSEVTYNILING------FSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIE 316
Query: 168 GHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF 227
G+ + A G+ M AG+ P+ TY +C G +D + + S+
Sbjct: 317 GYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAAPD--- 373
Query: 228 LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287
S+ + A + + + PS TY L+ G + G+++ +RL
Sbjct: 374 -VVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLK 432
Query: 288 AQSGSSLVNGD---YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP 344
+ + L+ D Y ++ +G+ EV M + G++P
Sbjct: 433 EEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVY---------------DEMLRKGIKP 477
Query: 345 SAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDI----IHALAVSGHGEYIDEI 400
YT G + GD D RL + ++ + L I I L G+ E
Sbjct: 478 DGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEF 537
Query: 401 ISKIQPGVGYSADAANH---IYHLINKGQIDAAYRIVNTLARS----------ANINGEQ 447
KI VG D + I + GQ A + + + R I G
Sbjct: 538 QRKIFR-VGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHA 596
Query: 448 LPVGGFLVRHMVKTNQPGVGYSADAANH---IYHLINKGQIDAAYRIVNTLARSANINGE 504
G T G + H +Y + G ID AYR + + E
Sbjct: 597 -KAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYL------CKMEEE 649
Query: 505 QLPVGGFLVRHMVKTNQPIDK---VLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGA 561
+P + ++ N +K V+ + + D+ + P + L K H+ K+ +
Sbjct: 650 GIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFK-HLEKDHESRE 708
Query: 562 VETFE 566
VE E
Sbjct: 709 VEFLE 713
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 117/296 (39%), Gaps = 29/296 (9%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+ YN L+ Y+ + L + I P+ VTY LI C+ GN+E
Sbjct: 373 DVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDG------LCESGNLE 426
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
GA ++ E M + + L+ G + +++ A + M + G++P YT
Sbjct: 427 GAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRA 486
Query: 202 CGYAKHGDMDS---IKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQA 258
G + GD D + ++ + + ++ ++ L + ++ A + +
Sbjct: 487 VGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKV--GNLVKAIEFQRKIFRV 544
Query: 259 GLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGEYI 315
GL P TYT ++ GY ++G R L + + Y +I+ A +G E
Sbjct: 545 GLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQA 604
Query: 316 DEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
+ S M + G+ P+ T+ L+ G K G++D R L +
Sbjct: 605 FQYST---------------EMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCK 645
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 18/208 (8%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D++ YN + + +F K+ G+ P+ VTY + +I Y ++G +
Sbjct: 514 DLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTY------TTVIRGYLENGQFK 567
Query: 142 GATKIL-EFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL 200
A + E +R + +P S + LIYGH++A + A T M + G+ P+ T+ L
Sbjct: 568 MARNLYDEMLRKRLYP-SVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNAL 626
Query: 201 MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTM---MSQ 257
+ G K G++D + ++ + +S+ +LI + D E ++ + M
Sbjct: 627 LYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSY---TMLISKNCDFEKWEEVVKLYKEMLD 683
Query: 258 AGLEPSAQTYTKLMCGYAKHGDMDSVRR 285
+EP T+ L KH + D R
Sbjct: 684 KEIEPDGYTHRALF----KHLEKDHESR 707
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 104/293 (35%), Gaps = 60/293 (20%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
DI YN L+ VY F ++E G+ PN VTY I + ++G +
Sbjct: 237 DIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHG------FSREGRMR 290
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
AT++ ++D + + LI G+ + ND+ A + +M G P TY ++
Sbjct: 291 EATRLFREIKDDV-TANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSIL 349
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE 261
+ G + A +LT MS +E
Sbjct: 350 RKLCEDG-----------------------------------RIREANRLLTEMSGKKIE 374
Query: 262 PSAQTYTKLMCGYAKHGDMDS---VRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEV 318
P T L+ Y K DM S V++ + +SG L Y +IH E E
Sbjct: 375 PDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKE- 433
Query: 319 SAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
E M + G P TY+ L+ G+ D I +LL +
Sbjct: 434 --------------ELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEE 472
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 12/198 (6%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
YN++LR ++ L ++ + IEP+ +T L I+ YC+ ++ A K
Sbjct: 345 YNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTL------INAYCKIEDMVSAVK 398
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+ + M + + + ALI+G + ++ +A+ L M + G P TY+ L+ G+
Sbjct: 399 VKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFY 458
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMAS---AEGILTMMSQAGLEP 262
D I + + + LC L LI + A+ + M + GL
Sbjct: 459 NQNKQDEITKLLEEFEKRG---LCADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVG 515
Query: 263 SAQTYTKLMCGYAKHGDM 280
+ +T + Y + G +
Sbjct: 516 DSVIFTTMAYAYWRTGKV 533
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/352 (21%), Positives = 143/352 (40%), Gaps = 50/352 (14%)
Query: 80 PLDISHYNALLRVYLDNEHTFSPTDFL-AKLESQGIEPNRVTYQQLISNSKLISKYCQDG 138
P D+SH + L +Y + + + ++ S G++P+ L + + L++ +
Sbjct: 129 PEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPH------LQACTVLLNSLVKQR 182
Query: 139 NIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198
+ KI + M + V+N L++ S++ D AE +L+ M + G+ P TY
Sbjct: 183 LTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYN 242
Query: 199 KLMCGYAK---HGDMDSIKTKI------PSLKPQSELFLCFSFQLTNLLILVSSDMASAE 249
L+ Y K H + S++ ++ P++ + FS + M A
Sbjct: 243 TLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSRE---------GRMREAT 293
Query: 250 GILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS---VRRLLAQSGSSLVNGDYLDIIHAL 306
+ + + + + TYT L+ GY + D+D +R ++ G S Y I+ L
Sbjct: 294 RLFREI-KDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKL 352
Query: 307 AVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDS-- 364
G I E + ++ MS +EP T L+ Y K DM S
Sbjct: 353 CEDGR---IREANRLL------------TEMSGKKIEPDNITCNTLINAYCKIEDMVSAV 397
Query: 365 -IRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYI-DEIISKIQPGV--GYSA 412
+++ + ++G L Y +IH E +E+ S I+ G GY+
Sbjct: 398 KVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYAT 449
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 135/344 (39%), Gaps = 49/344 (14%)
Query: 112 QGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ 171
+G PN V Y +I YC+ G+IE A + + ++ K F + F +I G +
Sbjct: 234 KGCIPNIVFYNTIIGG------YCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCK 287
Query: 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG----DMDSIKTKIPS-LKPQSEL 226
D +++ +L+ + + GL S ++ +HG +SI I + KP
Sbjct: 288 EGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVAT 347
Query: 227 FLCFSFQLTNLLI---LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSV 283
+ N+LI A G L S+ GL P+ +Y L+ Y K + D
Sbjct: 348 Y--------NILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIA 399
Query: 284 RRLLAQSGSSLVNGD---YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQA 340
+LL Q D Y +IH L VSGH + D V+ V ++
Sbjct: 400 SKLLLQMAERGCKPDIVTYGILIHGLVVSGHMD--DAVNMKVKLID-------------R 444
Query: 341 GLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD---YLDIIHALAVSGHGEYI 397
G+ P A Y LM G K G + L ++ + D Y +I SG +
Sbjct: 445 GVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEA 504
Query: 398 DEIIS-KIQPGVGYSADAANH---IYHLINKGQIDAAYRIVNTL 437
++ S ++ GV D +H I G +D A +N +
Sbjct: 505 RKVFSLSVEKGV--KVDVVHHNAMIKGFCRSGMLDEALACMNRM 546
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 126/334 (37%), Gaps = 62/334 (18%)
Query: 78 DVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQD 137
D D++ YN L+ FL + +G+ PN ++Y + LI YC+
Sbjct: 340 DCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSY------APLIQAYCKS 393
Query: 138 GNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTY 197
+ A+K+L M ++ + LI+G + M A + + G+ P A Y
Sbjct: 394 KEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIY 453
Query: 198 TKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQ 257
LM G K G +P A+ + + M
Sbjct: 454 NMLMSGLCKTGRF------LP-----------------------------AKLLFSEMLD 478
Query: 258 AGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALA-VSGHGE--Y 314
+ P A Y L+ G+ + GD D R++ + S+ G +D++H A + G
Sbjct: 479 RNILPDAYVYATLIDGFIRSGDFDEARKVFSL---SVEKGVKVDVVHHNAMIKGFCRSGM 535
Query: 315 IDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDS---IRRLLAQ 371
+DE A+ C M++ L P TY+ ++ GY K DM + I R + +
Sbjct: 536 LDE--ALACM----------NRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEK 583
Query: 372 NGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQ 405
N Y +I+ G + +E ++Q
Sbjct: 584 NKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQ 617
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/257 (19%), Positives = 108/257 (42%), Gaps = 21/257 (8%)
Query: 124 LISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILT 183
++ ++ +I +C+ G ++ A + M ++ + ++ +I G+ + DMA+A I
Sbjct: 520 VVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFR 579
Query: 184 MMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSF-QLTNLLILVS 242
M + +P+ TYT L+ G+ GD + ++ + + ++ L L S
Sbjct: 580 YMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKES 639
Query: 243 SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS-----GSSLVNG 297
S + A +M P+ T+ L+ G+ K + ++LA+ G S +
Sbjct: 640 STLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKK----TSGKVLAEPDGSNHGQSSLFS 695
Query: 298 DYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPM------MSQAGLEPSAQTYTK 351
++ + + S H + SA+VC +C H + M + G P ++
Sbjct: 696 EFFHRMKSDGWSDHAAAYN--SALVC---LCVHGMVKTACMFQDKMVKKGFSPDPVSFAA 750
Query: 352 LMCGYAKHGDMDSIRRL 368
++ G+ G+ R +
Sbjct: 751 ILHGFCVVGNSKQWRNM 767
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 119/285 (41%), Gaps = 42/285 (14%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
YN ++ +Y ++ ++ S +PN TY + L++ + ++G E A +
Sbjct: 267 YNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTY------TALVNAFAREGLCEKAEE 320
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
I E +++ V+NAL+ +S+A A I ++M G EP +Y ++ Y
Sbjct: 321 IFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYG 380
Query: 206 K---HGDMDSIKTKI------PSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
+ H D +++ ++ P++K L +S + D+ E I+ MS
Sbjct: 381 RAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYS---------KARDVTKCEAIVKEMS 431
Query: 257 QAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGE 313
+ G+EP ++ Y + G + ++LA+ + D Y +I+ +G E
Sbjct: 432 ENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLE 491
Query: 314 YIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAK 358
I+E+ FV + + P T+T + Y++
Sbjct: 492 RIEEL-----FVE----------LKEKNFRPDVVTWTSRIGAYSR 521
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 82/199 (41%), Gaps = 14/199 (7%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+ YNAL+ Y + + + + ++ G EP+R +Y + ++ Y + G
Sbjct: 333 DVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASY------NIMVDAYGRAGLHS 386
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A + E M+ + L+ +S+A D+ E I+ MS+ G+EP ++
Sbjct: 387 DAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSML 446
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFS-FQLTNLLILVSSD---MASAEGILTMMSQ 257
Y + G TK+ + + E C + N+LI + + E + + +
Sbjct: 447 NLYGRLGQF----TKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKE 502
Query: 258 AGLEPSAQTYTKLMCGYAK 276
P T+T + Y++
Sbjct: 503 KNFRPDVVTWTSRIGAYSR 521
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 115/280 (41%), Gaps = 29/280 (10%)
Query: 136 QDGNIEGATKILEFM-RDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA 194
+ GN E A + + M RD+ P +E +N +I + +A+ + + M +P+
Sbjct: 241 RKGNTEEAIDVFQRMKRDRCKPTTE-TYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNI 299
Query: 195 QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEG---I 251
TYT L+ +A+ G + + L+ L + N L+ S G I
Sbjct: 300 CTYTALVNAFAREGLCEKAEEIFEQLQEDG---LEPDVYVYNALMESYSRAGYPYGAAEI 356
Query: 252 LTMMSQAGLEPSAQTYTKLMCGYAK---HGDMDSVRRLLAQSGSSLVNGDYLDIIHALAV 308
++M G EP +Y ++ Y + H D ++V + + G + ++ ++ A +
Sbjct: 357 FSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYS- 415
Query: 309 SGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRL 368
+ + AIV MS+ G+EP ++ Y + G + ++
Sbjct: 416 --KARDVTKCEAIV------------KEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKI 461
Query: 369 LAQNGSSLVNGD---YLDIIHALAVSGHGEYIDEIISKIQ 405
LA+ + D Y +I+ +G E I+E+ +++
Sbjct: 462 LAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELK 501
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 24/219 (10%)
Query: 150 MRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 209
+R +F FN LI + Q AE + + ++ P+ TY L+ Y G
Sbjct: 146 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 205
Query: 210 MDSIKTKIPSLK-----PQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSA 264
++ + + ++ P++ ++ + L+ + A + M + +P+
Sbjct: 206 IERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKR-KGNTEEAIDVFQRMKRDRCKPTT 264
Query: 265 QTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGEYIDEVSAI 321
+TY ++ Y K +L + S + Y +++A A G E +E+
Sbjct: 265 ETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEI--- 321
Query: 322 VCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG 360
F L+ + GLEP Y LM Y++ G
Sbjct: 322 -------FEQLQ-----EDGLEPDVYVYNALMESYSRAG 348
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 135/333 (40%), Gaps = 37/333 (11%)
Query: 124 LISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILT 183
LI+ + LI YC+ GN E + K+ E M+ S FN L+ G +A + AE +L
Sbjct: 249 LITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLK 308
Query: 184 MMSQAGLEPSAQTYTKLMCGYAKHGDMDS----IKTKIPSLKPQSELFLCFSFQLTNLLI 239
M G P A T++ L GY+ + ++ +T + S + + C S L L
Sbjct: 309 EMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDS-GVKMNAYTC-SILLNAL-- 364
Query: 240 LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDY 299
+ AE IL GL P+ Y ++ GY + GD+ R + + D+
Sbjct: 365 CKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDH 424
Query: 300 LD---IIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGY 356
L +I G E ++ E M G+ PS +TY L+ GY
Sbjct: 425 LAYNCLIRRFCELGEMENAEK---------------EVNKMKLKGVSPSVETYNILIGGY 469
Query: 357 AKHGDMDS---IRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSAD 413
+ + D I + + NG+ Y +I+ L G +I+ + G S
Sbjct: 470 GRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLC-KGSKLLEAQIVKRDMEDRGVSPK 528
Query: 414 AANHIYHLI-----NKGQIDAAYRIVNTLARSA 441
IY+++ +KG+I+ A+R + +
Sbjct: 529 V--RIYNMLIDGCCSKGKIEDAFRFSKEMLKKG 559
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 26/189 (13%)
Query: 109 LESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYG 168
+E +G+ P Y LI C G IE A + + M K ++ +N LI G
Sbjct: 520 MEDRGVSPKVRIYNMLIDGC------CSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDG 573
Query: 169 HSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSI-----KTKIPSLKPQ 223
S ++ AE +L +S+ GL+P TY L+ GY G++ + K +KP
Sbjct: 574 LSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKP- 632
Query: 224 SELFLCFSFQLTNLLILVSSDMASAEGI-LT--MMSQAGLEPSAQTYTKLMCGYAKHGDM 280
+ + +LLI + + EGI LT + + L+P Y ++ YA HGDM
Sbjct: 633 -------TLKTYHLLI----SLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDM 681
Query: 281 DSVRRLLAQ 289
+ L Q
Sbjct: 682 EKAFNLQKQ 690
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/425 (22%), Positives = 171/425 (40%), Gaps = 62/425 (14%)
Query: 105 FLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMR-DKTFPISEGVFN 163
FL LES P++ Y + I + +S ++ ++ M+ D+ +P S ++N
Sbjct: 167 FLNILESD-FRPSKFMYGKAIQAAVKLS------DVGKGLELFNRMKHDRIYP-SVFIYN 218
Query: 164 ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSI-----KTKIP 218
LI G + M AE + M L PS TY L+ GY K G+ + + K
Sbjct: 219 VLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKAD 278
Query: 219 SLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG 278
++P + F+ L L + + AE +L M G P A T++ L GY+ +
Sbjct: 279 HIEPS---LITFNTLLKGL--FKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNE 333
Query: 279 DMDS---VRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGP 335
++ V SG + +++AL G E +E+ G
Sbjct: 334 KAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEIL--------------GR 379
Query: 336 MMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLD---IIHALAVSG 392
M++ GL P+ Y ++ GY + GD+ R + + D+L +I G
Sbjct: 380 EMAK-GLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELG 438
Query: 393 HGEYIDEIISKIQ-PGVGYSADAAN-HIYHLINKGQIDAAYRIV----------NTLARS 440
E ++ ++K++ GV S + N I K + D + I+ N ++
Sbjct: 439 EMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYG 498
Query: 441 ANINGEQLPVGGFLVR-HMVKTNQPGVGYSADAANHIYHLI-----NKGQIDAAYRIVNT 494
IN L G L+ +VK + G S IY+++ +KG+I+ A+R
Sbjct: 499 TLINC--LCKGSKLLEAQIVKRDMEDRGVSPKV--RIYNMLIDGCCSKGKIEDAFRFSKE 554
Query: 495 LARSA 499
+ +
Sbjct: 555 MLKKG 559
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 99/289 (34%), Gaps = 57/289 (19%)
Query: 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEG 142
+ YN L+ Y D L ++E G PN V+Y LI+ C+ +
Sbjct: 459 VETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSY------GTLINCLCKGSKLLE 512
Query: 143 ATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMC 202
A + M D+ ++N LI G + A M + G+E + TY L+
Sbjct: 513 AQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLID 572
Query: 203 GYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEP 262
G + G ++ AE +L +S+ GL+P
Sbjct: 573 GLSMTG-----------------------------------KLSEAEDLLLEISRKGLKP 597
Query: 263 SAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIV 322
TY L+ GY G++ L + S + L H L E I+
Sbjct: 598 DVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIK-PTLKTYHLLISLCTKEGIE------ 650
Query: 323 CFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371
L + + L+P Y ++ YA HGDM+ L Q
Sbjct: 651 ---------LTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQ 690
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 326,200,285
Number of Sequences: 539616
Number of extensions: 13945670
Number of successful extensions: 43288
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 39985
Number of HSP's gapped (non-prelim): 1682
length of query: 902
length of database: 191,569,459
effective HSP length: 127
effective length of query: 775
effective length of database: 123,038,227
effective search space: 95354625925
effective search space used: 95354625925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)