Query psy767
Match_columns 902
No_of_seqs 617 out of 3656
Neff 9.3
Searched_HMMs 46136
Date Sat Aug 17 00:24:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.6E-63 3.5E-68 615.4 56.9 655 40-804 48-729 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4.1E-63 8.9E-68 611.7 55.6 599 42-740 120-768 (857)
3 PLN03218 maturation of RBCL 1; 100.0 6.1E-58 1.3E-62 554.8 53.9 606 2-747 327-957 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 8E-58 1.7E-62 553.8 54.3 522 22-641 383-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 4.2E-55 9.1E-60 528.0 42.5 466 44-589 88-558 (697)
6 PLN03081 pentatricopeptide (PP 100.0 4.4E-51 9.4E-56 493.1 48.8 499 78-738 82-603 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 2.2E-22 4.8E-27 252.6 58.2 582 52-733 304-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.7E-21 3.6E-26 244.7 62.3 477 19-564 100-619 (899)
9 KOG4318|consensus 99.9 1.4E-23 3.1E-28 233.4 24.1 415 103-826 10-427 (1088)
10 PRK11447 cellulose synthase su 99.8 8.8E-15 1.9E-19 186.2 53.3 611 22-736 41-701 (1157)
11 PRK11788 tetratricopeptide rep 99.7 6.7E-16 1.5E-20 174.6 28.2 290 92-440 44-347 (389)
12 PRK11788 tetratricopeptide rep 99.7 2.2E-14 4.8E-19 162.1 34.3 311 40-414 31-353 (389)
13 PRK11447 cellulose synthase su 99.7 5E-14 1.1E-18 179.3 39.7 456 50-549 276-758 (1157)
14 KOG4318|consensus 99.7 1E-13 2.2E-18 155.6 33.3 647 74-873 16-709 (1088)
15 PRK09782 bacteriophage N4 rece 99.7 1.2E-11 2.5E-16 151.1 51.6 597 50-733 51-704 (987)
16 KOG4422|consensus 99.7 7.6E-13 1.7E-17 137.5 34.8 362 81-497 205-589 (625)
17 TIGR00990 3a0801s09 mitochondr 99.6 2.1E-11 4.6E-16 145.8 46.0 402 86-536 130-571 (615)
18 KOG4626|consensus 99.6 1.1E-12 2.5E-17 141.8 31.1 426 22-549 61-497 (966)
19 PRK15174 Vi polysaccharide exp 99.6 2.3E-12 5E-17 153.7 36.5 322 49-440 48-381 (656)
20 PRK15174 Vi polysaccharide exp 99.6 9.3E-12 2E-16 148.6 41.6 352 58-499 20-382 (656)
21 KOG4422|consensus 99.6 1.7E-11 3.8E-16 127.6 37.0 304 83-439 116-461 (625)
22 KOG4626|consensus 99.5 8.2E-12 1.8E-16 135.3 29.5 411 87-564 52-474 (966)
23 TIGR00990 3a0801s09 mitochondr 99.5 2.7E-10 5.9E-15 136.3 46.0 377 131-564 134-560 (615)
24 PRK09782 bacteriophage N4 rece 99.5 3.8E-10 8.2E-15 138.0 47.5 209 22-257 57-275 (987)
25 PRK10049 pgaA outer membrane p 99.5 2.5E-10 5.5E-15 139.2 43.1 401 55-549 27-467 (765)
26 PRK10049 pgaA outer membrane p 99.4 7E-10 1.5E-14 135.4 41.5 156 131-292 22-178 (765)
27 PRK14574 hmsH outer membrane p 99.4 7.4E-09 1.6E-13 124.3 48.3 433 86-564 38-502 (822)
28 PRK14574 hmsH outer membrane p 99.3 1.7E-08 3.7E-13 121.2 42.7 178 337-544 318-519 (822)
29 KOG2002|consensus 99.3 1.4E-07 3.1E-12 108.7 47.1 553 59-732 146-743 (1018)
30 KOG2002|consensus 99.3 1.3E-07 2.9E-12 108.9 42.5 443 58-564 251-734 (1018)
31 PF13041 PPR_2: PPR repeat fam 99.2 2.6E-11 5.6E-16 92.2 6.5 50 157-206 1-50 (50)
32 KOG2076|consensus 99.2 1.2E-05 2.5E-10 92.8 52.4 335 79-438 135-510 (895)
33 PRK10747 putative protoheme IX 99.1 3.7E-08 8E-13 111.0 29.4 288 86-438 85-388 (398)
34 PF13041 PPR_2: PPR repeat fam 99.1 1.2E-10 2.5E-15 88.6 6.2 50 81-136 1-50 (50)
35 KOG2076|consensus 99.1 1.3E-05 2.9E-10 92.3 48.8 327 51-405 148-510 (895)
36 TIGR00540 hemY_coli hemY prote 99.1 4.4E-08 9.5E-13 110.9 27.1 199 84-293 83-292 (409)
37 PF13429 TPR_15: Tetratricopep 99.1 3.5E-10 7.5E-15 121.5 9.5 191 88-289 13-205 (280)
38 PRK10747 putative protoheme IX 99.0 5.5E-08 1.2E-12 109.6 26.1 252 93-404 128-387 (398)
39 KOG0593|consensus 99.0 2.2E-11 4.8E-16 122.2 -2.2 58 823-880 213-295 (396)
40 TIGR00540 hemY_coli hemY prote 99.0 9.9E-08 2.1E-12 108.1 26.0 289 54-405 95-397 (409)
41 KOG0495|consensus 99.0 0.0001 2.2E-09 81.9 47.3 487 79-671 376-883 (913)
42 PF13429 TPR_15: Tetratricopep 99.0 4.4E-09 9.5E-14 112.9 12.1 253 19-290 18-274 (280)
43 TIGR02521 type_IV_pilW type IV 98.9 1E-06 2.2E-11 91.1 27.6 202 81-292 29-231 (234)
44 KOG1915|consensus 98.9 2E-05 4.4E-10 84.2 36.3 421 22-499 86-537 (677)
45 COG3071 HemY Uncharacterized e 98.9 1.3E-06 2.7E-11 92.0 26.9 294 87-406 86-389 (400)
46 KOG2003|consensus 98.9 1.8E-06 4E-11 91.0 27.6 428 84-588 202-689 (840)
47 KOG0495|consensus 98.9 5.7E-05 1.2E-09 83.9 39.8 388 89-531 412-811 (913)
48 COG2956 Predicted N-acetylgluc 98.9 4.8E-06 1E-10 85.1 29.4 295 172-589 48-348 (389)
49 KOG1126|consensus 98.8 6.8E-07 1.5E-11 99.6 23.4 278 174-539 334-623 (638)
50 COG3071 HemY Uncharacterized e 98.8 4.8E-06 1.1E-10 87.7 27.9 297 172-541 97-395 (400)
51 TIGR02521 type_IV_pilW type IV 98.8 3.1E-06 6.6E-11 87.4 26.3 163 118-289 31-194 (234)
52 KOG1126|consensus 98.7 2.4E-06 5.2E-11 95.4 23.2 296 76-440 306-620 (638)
53 KOG3785|consensus 98.7 0.00027 5.8E-09 73.2 35.7 396 90-564 29-446 (557)
54 PRK12370 invasion protein regu 98.7 8.8E-06 1.9E-10 95.9 29.1 134 81-225 254-403 (553)
55 KOG2003|consensus 98.7 9.7E-06 2.1E-10 85.7 25.4 379 87-521 280-709 (840)
56 KOG0547|consensus 98.7 1.5E-05 3.3E-10 85.7 26.8 388 48-534 120-564 (606)
57 COG2956 Predicted N-acetylgluc 98.7 1.7E-05 3.7E-10 81.2 25.5 242 56-308 48-293 (389)
58 KOG1155|consensus 98.6 0.00035 7.6E-09 75.1 35.9 248 240-535 238-494 (559)
59 KOG0547|consensus 98.6 0.00025 5.5E-09 76.5 34.3 149 356-535 336-490 (606)
60 KOG1840|consensus 98.6 1.1E-05 2.5E-10 90.9 25.8 60 474-534 414-477 (508)
61 KOG1155|consensus 98.6 5.2E-05 1.1E-09 81.2 28.2 255 132-440 235-495 (559)
62 KOG1840|consensus 98.6 8E-06 1.7E-10 92.1 23.6 246 84-405 200-477 (508)
63 PRK12370 invasion protein regu 98.5 7.2E-06 1.6E-10 96.6 22.9 213 57-289 275-498 (553)
64 PF12569 NARP1: NMDA receptor- 98.5 3.9E-05 8.4E-10 87.7 27.8 310 131-498 11-334 (517)
65 PF12854 PPR_1: PPR repeat 98.5 1E-07 2.2E-12 65.3 4.0 34 153-186 1-34 (34)
66 KOG2047|consensus 98.5 0.002 4.3E-08 72.0 38.0 423 51-564 110-604 (835)
67 PF12854 PPR_1: PPR repeat 98.5 2.1E-07 4.5E-12 63.7 4.5 34 258-291 1-34 (34)
68 KOG1915|consensus 98.5 0.00063 1.4E-08 73.2 31.7 350 54-440 152-536 (677)
69 KOG1156|consensus 98.5 0.0018 3.9E-08 72.6 36.5 421 54-534 52-509 (700)
70 KOG2376|consensus 98.4 0.00045 9.7E-09 76.5 30.5 447 50-552 19-502 (652)
71 KOG3785|consensus 98.4 0.0023 5E-08 66.4 33.2 505 132-811 30-550 (557)
72 KOG3617|consensus 98.4 0.0029 6.4E-08 72.2 36.5 93 205-321 923-1015(1416)
73 KOG1129|consensus 98.4 1.5E-05 3.2E-10 81.4 16.5 223 163-440 227-458 (478)
74 KOG1156|consensus 98.4 0.001 2.3E-08 74.5 32.1 361 82-499 142-512 (700)
75 PF12569 NARP1: NMDA receptor- 98.3 0.0014 3E-08 75.2 33.3 287 91-441 12-335 (517)
76 KOG1129|consensus 98.3 2.5E-05 5.4E-10 79.8 15.3 227 47-290 227-455 (478)
77 KOG2047|consensus 98.2 0.018 4E-07 64.7 38.8 464 46-564 141-676 (835)
78 COG3063 PilF Tfp pilus assembl 98.2 0.00015 3.2E-09 71.4 19.3 182 348-564 37-225 (250)
79 KOG1173|consensus 98.2 0.0035 7.7E-08 69.3 31.9 282 193-552 243-532 (611)
80 KOG3616|consensus 98.2 0.0041 8.9E-08 70.0 31.3 190 136-371 744-933 (1636)
81 PRK11189 lipoprotein NlpI; Pro 98.1 0.00063 1.4E-08 73.4 24.2 197 83-294 64-266 (296)
82 KOG1174|consensus 98.1 0.0051 1.1E-07 65.4 29.2 275 114-415 228-505 (564)
83 KOG3616|consensus 98.1 0.041 8.8E-07 62.4 38.9 110 50-183 739-848 (1636)
84 cd05804 StaR_like StaR_like; a 98.1 0.011 2.4E-07 65.7 33.2 301 131-498 13-336 (355)
85 KOG1173|consensus 98.0 0.0028 6E-08 70.1 26.5 279 82-416 243-524 (611)
86 PRK11189 lipoprotein NlpI; Pro 98.0 0.00086 1.9E-08 72.4 22.8 210 41-272 62-278 (296)
87 KOG3617|consensus 98.0 0.0015 3.3E-08 74.4 24.7 249 50-371 735-992 (1416)
88 cd05804 StaR_like StaR_like; a 98.0 0.02 4.3E-07 63.7 33.8 199 84-292 7-214 (355)
89 KOG2376|consensus 98.0 0.051 1.1E-06 60.8 38.8 126 675-825 378-515 (652)
90 KOG4340|consensus 98.0 0.003 6.6E-08 64.2 22.8 323 131-534 17-373 (459)
91 TIGR00756 PPR pentatricopeptid 97.9 1.3E-05 2.9E-10 55.3 4.4 35 160-194 1-35 (35)
92 PF04733 Coatomer_E: Coatomer 97.9 0.00051 1.1E-08 73.2 18.3 257 131-414 8-269 (290)
93 KOG4162|consensus 97.9 0.067 1.4E-06 61.7 35.1 412 78-535 318-782 (799)
94 KOG1174|consensus 97.9 0.024 5.3E-07 60.4 29.0 247 138-440 210-467 (564)
95 KOG4162|consensus 97.9 0.0075 1.6E-07 69.2 26.7 401 42-503 322-788 (799)
96 COG3063 PilF Tfp pilus assembl 97.9 0.0048 1E-07 61.0 21.9 197 84-290 36-233 (250)
97 PF13812 PPR_3: Pentatricopept 97.8 2.5E-05 5.3E-10 53.6 4.3 33 160-192 2-34 (34)
98 PF04733 Coatomer_E: Coatomer 97.8 0.00031 6.7E-09 74.9 14.3 250 167-498 9-265 (290)
99 KOG1914|consensus 97.8 0.099 2.1E-06 58.0 35.4 400 80-535 17-500 (656)
100 PRK04841 transcriptional regul 97.8 0.032 6.9E-07 70.7 34.5 338 134-537 384-761 (903)
101 PRK04841 transcriptional regul 97.8 0.032 6.9E-07 70.6 34.3 317 88-499 414-761 (903)
102 KOG0985|consensus 97.8 0.18 3.9E-06 59.7 38.3 256 131-438 1111-1368(1666)
103 TIGR00756 PPR pentatricopeptid 97.7 4E-05 8.6E-10 52.8 4.2 35 84-118 1-35 (35)
104 PF13812 PPR_3: Pentatricopept 97.7 4.7E-05 1E-09 52.2 3.8 33 84-116 2-34 (34)
105 KOG1128|consensus 97.7 0.002 4.3E-08 73.3 18.3 211 128-406 402-615 (777)
106 KOG1070|consensus 97.6 0.0023 5.1E-08 77.3 18.7 215 261-544 1455-1671(1710)
107 TIGR03302 OM_YfiO outer membra 97.6 0.006 1.3E-07 63.4 20.3 189 261-536 30-232 (235)
108 PF01535 PPR: PPR repeat; Int 97.6 8.1E-05 1.8E-09 49.7 3.4 31 160-190 1-31 (31)
109 KOG1125|consensus 97.6 0.0042 9.2E-08 69.0 18.3 73 337-412 421-495 (579)
110 TIGR03302 OM_YfiO outer membra 97.5 0.0099 2.2E-07 61.8 20.2 170 117-293 32-232 (235)
111 KOG1070|consensus 97.4 0.026 5.6E-07 68.8 24.0 209 80-298 1455-1668(1710)
112 KOG1127|consensus 97.4 0.39 8.4E-06 57.2 31.6 89 345-437 816-910 (1238)
113 KOG2053|consensus 97.3 0.6 1.3E-05 55.1 42.3 76 660-737 494-571 (932)
114 COG4783 Putative Zn-dependent 97.3 0.15 3.3E-06 56.1 26.1 200 138-406 251-453 (484)
115 KOG4340|consensus 97.3 0.01 2.2E-07 60.5 16.0 308 348-701 12-338 (459)
116 KOG1125|consensus 97.3 0.015 3.3E-07 64.7 18.6 186 93-292 295-492 (579)
117 PF08579 RPM2: Mitochondrial r 97.3 0.0032 7E-08 55.0 10.6 77 131-207 32-117 (120)
118 PF01535 PPR: PPR repeat; Int 97.3 0.00022 4.9E-09 47.5 2.7 31 84-114 1-31 (31)
119 KOG1127|consensus 97.3 0.78 1.7E-05 54.8 32.8 196 84-289 493-696 (1238)
120 KOG0624|consensus 97.2 0.36 7.7E-06 50.7 27.1 306 160-552 39-351 (504)
121 KOG1128|consensus 97.2 0.0093 2E-07 68.1 16.5 220 226-535 395-615 (777)
122 PRK15359 type III secretion sy 97.2 0.0098 2.1E-07 56.5 14.4 100 86-195 27-126 (144)
123 PLN02789 farnesyltranstransfer 97.2 0.18 3.8E-06 54.7 25.8 193 85-289 39-246 (320)
124 PF10037 MRP-S27: Mitochondria 97.2 0.0026 5.7E-08 70.4 11.6 120 82-207 65-186 (429)
125 PRK10370 formate-dependent nit 97.2 0.066 1.4E-06 53.8 20.8 148 131-293 23-173 (198)
126 PF08579 RPM2: Mitochondrial r 97.2 0.0062 1.3E-07 53.3 11.1 90 161-277 27-117 (120)
127 COG5010 TadD Flp pilus assembl 97.2 0.03 6.5E-07 56.7 17.5 128 82-218 99-226 (257)
128 PRK15179 Vi polysaccharide bio 97.1 0.053 1.1E-06 64.9 21.6 122 131-256 93-215 (694)
129 KOG0985|consensus 97.1 1.2 2.6E-05 53.2 44.7 372 95-552 850-1259(1666)
130 KOG3081|consensus 97.1 0.28 6.1E-06 49.9 23.0 173 249-498 93-271 (299)
131 COG4783 Putative Zn-dependent 97.0 0.046 9.9E-07 60.1 18.9 110 96-214 319-428 (484)
132 TIGR02552 LcrH_SycD type III s 97.0 0.017 3.6E-07 54.1 14.1 105 84-198 18-122 (135)
133 COG5010 TadD Flp pilus assembl 97.0 0.057 1.2E-06 54.7 18.1 155 131-289 73-227 (257)
134 KOG0624|consensus 97.0 0.45 9.7E-06 50.0 24.4 299 49-439 44-369 (504)
135 PRK15359 type III secretion sy 97.0 0.014 3E-07 55.4 12.8 109 103-223 13-121 (144)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.022 4.8E-07 63.0 15.9 124 86-222 172-296 (395)
137 PLN02789 farnesyltranstransfer 96.9 0.11 2.3E-06 56.4 20.9 207 53-277 47-268 (320)
138 PRK14720 transcript cleavage f 96.9 0.11 2.4E-06 62.9 22.6 237 82-389 30-268 (906)
139 KOG3081|consensus 96.9 0.018 4E-07 58.1 13.4 50 138-188 187-236 (299)
140 PF06239 ECSIT: Evolutionarily 96.9 0.009 2E-07 58.9 11.0 90 115-210 44-154 (228)
141 PRK10370 formate-dependent nit 96.9 0.025 5.4E-07 56.9 14.6 90 131-222 80-172 (198)
142 KOG0548|consensus 96.8 1.3 2.7E-05 49.6 27.3 103 92-204 11-114 (539)
143 PRK14720 transcript cleavage f 96.8 0.25 5.5E-06 59.9 24.0 180 152-416 23-204 (906)
144 KOG0548|consensus 96.8 0.27 5.9E-06 54.7 22.0 347 16-424 9-469 (539)
145 PRK15179 Vi polysaccharide bio 96.8 0.063 1.4E-06 64.2 18.9 138 79-226 82-220 (694)
146 PF09295 ChAPs: ChAPs (Chs5p-A 96.8 0.045 9.8E-07 60.5 16.4 126 161-292 171-296 (395)
147 PF09976 TPR_21: Tetratricopep 96.7 0.075 1.6E-06 50.5 15.7 128 84-219 13-143 (145)
148 KOG2280|consensus 96.7 1.4 3.1E-05 51.1 27.7 377 49-492 395-793 (829)
149 PF14938 SNAP: Soluble NSF att 96.7 0.87 1.9E-05 48.7 25.4 96 475-576 161-264 (282)
150 TIGR02552 LcrH_SycD type III s 96.7 0.031 6.8E-07 52.2 12.7 91 131-223 24-114 (135)
151 KOG3060|consensus 96.6 0.28 6E-06 49.6 19.1 187 173-412 26-222 (289)
152 PF09976 TPR_21: Tetratricopep 96.6 0.13 2.9E-06 48.8 16.6 88 131-220 19-111 (145)
153 PF10037 MRP-S27: Mitochondria 96.6 0.025 5.3E-07 62.9 13.0 116 105-226 50-170 (429)
154 KOG2053|consensus 96.6 2.6 5.7E-05 50.1 42.0 201 86-296 44-258 (932)
155 KOG2041|consensus 96.5 0.5 1.1E-05 53.9 21.8 58 675-732 1020-1083(1189)
156 PF04840 Vps16_C: Vps16, C-ter 96.5 1.7 3.8E-05 47.0 27.1 109 346-493 177-286 (319)
157 cd00189 TPR Tetratricopeptide 96.4 0.038 8.3E-07 46.8 10.9 90 131-222 7-96 (100)
158 cd00189 TPR Tetratricopeptide 96.4 0.043 9.2E-07 46.5 11.1 96 85-188 2-97 (100)
159 PF06239 ECSIT: Evolutionarily 96.3 0.025 5.4E-07 55.9 9.7 104 157-279 45-153 (228)
160 TIGR02795 tol_pal_ybgF tol-pal 96.0 0.19 4.1E-06 45.4 13.7 99 85-189 4-106 (119)
161 KOG1538|consensus 95.9 0.55 1.2E-05 53.1 18.5 97 115-222 553-660 (1081)
162 PLN03088 SGT1, suppressor of 95.9 0.13 2.8E-06 56.9 14.2 104 90-203 9-112 (356)
163 CHL00033 ycf3 photosystem I as 95.9 0.16 3.4E-06 49.6 13.4 97 82-185 34-139 (168)
164 PF03704 BTAD: Bacterial trans 95.9 0.069 1.5E-06 50.8 10.4 115 82-197 2-139 (146)
165 PRK02603 photosystem I assembl 95.8 0.29 6.2E-06 48.0 15.0 86 82-174 34-121 (172)
166 TIGR02795 tol_pal_ybgF tol-pal 95.8 0.14 3E-06 46.3 11.8 93 131-223 9-105 (119)
167 PF05843 Suf: Suppressor of fo 95.7 0.23 4.9E-06 53.0 14.8 131 119-257 2-135 (280)
168 PF14559 TPR_19: Tetratricopep 95.7 0.033 7.1E-07 44.9 6.3 64 135-201 2-65 (68)
169 KOG1914|consensus 95.7 0.59 1.3E-05 52.1 17.4 131 160-292 367-500 (656)
170 PF12895 Apc3: Anaphase-promot 95.6 0.021 4.6E-07 48.4 5.2 51 131-183 32-82 (84)
171 PF14938 SNAP: Soluble NSF att 95.4 3.2 6.9E-05 44.4 22.3 100 265-406 156-265 (282)
172 PF05843 Suf: Suppressor of fo 95.4 0.18 3.8E-06 53.9 12.3 129 84-222 2-135 (280)
173 KOG3060|consensus 95.3 3.2 6.9E-05 42.2 19.6 162 86-257 55-219 (289)
174 CHL00033 ycf3 photosystem I as 95.3 0.55 1.2E-05 45.8 14.7 86 131-217 42-136 (168)
175 PF12895 Apc3: Anaphase-promot 95.2 0.036 7.7E-07 47.0 5.1 80 137-219 2-83 (84)
176 PRK02603 photosystem I assembl 95.0 0.71 1.5E-05 45.2 14.7 82 131-214 42-126 (172)
177 PF04840 Vps16_C: Vps16, C-ter 95.0 6.7 0.00015 42.5 27.7 51 233-287 181-231 (319)
178 PF13432 TPR_16: Tetratricopep 94.9 0.11 2.5E-06 41.3 7.1 57 131-188 4-60 (65)
179 PRK10866 outer membrane biogen 94.8 1.8 3.9E-05 45.0 17.6 179 345-534 31-239 (243)
180 PRK15363 pathogenicity island 94.6 0.48 1E-05 44.9 11.2 90 131-222 42-131 (157)
181 PF12921 ATP13: Mitochondrial 94.6 0.43 9.4E-06 43.8 10.8 87 117-209 1-103 (126)
182 PF12688 TPR_5: Tetratrico pep 94.5 0.93 2E-05 41.2 12.6 53 169-221 11-65 (120)
183 PF12921 ATP13: Mitochondrial 94.5 0.52 1.1E-05 43.3 11.1 100 193-358 1-100 (126)
184 PRK10866 outer membrane biogen 94.4 7.4 0.00016 40.4 22.2 186 82-290 31-238 (243)
185 PLN03088 SGT1, suppressor of 94.2 0.5 1.1E-05 52.3 12.6 91 131-223 9-99 (356)
186 KOG1538|consensus 94.2 1.8 4E-05 49.1 16.4 57 84-149 599-657 (1081)
187 PRK10153 DNA-binding transcrip 94.2 2.7 5.8E-05 48.9 18.7 142 153-298 331-488 (517)
188 PF12688 TPR_5: Tetratrico pep 94.1 2.2 4.7E-05 38.9 14.1 106 89-206 7-118 (120)
189 PF14559 TPR_19: Tetratricopep 94.0 0.19 4.1E-06 40.3 6.6 64 94-166 2-65 (68)
190 PRK10153 DNA-binding transcrip 93.9 2.3 4.9E-05 49.5 17.5 140 77-226 331-485 (517)
191 PF13432 TPR_16: Tetratricopep 93.4 0.18 3.9E-06 40.1 5.4 53 354-406 5-59 (65)
192 PF13371 TPR_9: Tetratricopept 93.3 0.46 9.9E-06 38.7 7.8 63 131-196 2-64 (73)
193 PF13414 TPR_11: TPR repeat; P 93.2 0.37 8.1E-06 38.7 7.1 56 131-187 10-66 (69)
194 KOG3941|consensus 93.0 0.67 1.5E-05 47.4 9.6 90 115-210 64-174 (406)
195 KOG0553|consensus 92.8 1 2.2E-05 46.9 10.9 99 93-202 91-190 (304)
196 PF13414 TPR_11: TPR repeat; P 92.8 0.17 3.6E-06 40.8 4.3 61 346-406 3-66 (69)
197 PF13170 DUF4003: Protein of u 92.5 2.6 5.5E-05 45.2 14.0 143 384-549 63-224 (297)
198 KOG1920|consensus 92.4 24 0.00052 43.8 22.8 82 352-439 971-1054(1265)
199 PF07079 DUF1347: Protein of u 92.3 22 0.00047 39.5 28.6 457 135-732 17-521 (549)
200 smart00299 CLH Clathrin heavy 92.1 8.2 0.00018 36.1 15.7 122 131-275 14-136 (140)
201 PRK10803 tol-pal system protei 92.0 1.5 3.3E-05 46.0 11.5 63 473-536 184-246 (263)
202 COG4700 Uncharacterized protei 91.7 7.7 0.00017 37.6 14.4 118 131-252 96-216 (251)
203 PRK10803 tol-pal system protei 91.7 3.1 6.7E-05 43.8 13.3 103 83-195 143-251 (263)
204 PRK15363 pathogenicity island 91.7 3.2 6.8E-05 39.4 11.9 96 85-188 37-132 (157)
205 KOG3941|consensus 91.3 1.9 4.1E-05 44.3 10.5 103 157-280 65-174 (406)
206 COG1729 Uncharacterized protei 91.2 3.1 6.8E-05 43.0 12.3 60 475-535 184-243 (262)
207 PF03704 BTAD: Bacterial trans 90.6 1.2 2.7E-05 42.0 8.5 71 85-162 64-139 (146)
208 COG4105 ComL DNA uptake lipopr 90.5 23 0.0005 36.5 18.4 180 346-536 35-233 (254)
209 PF13525 YfiO: Outer membrane 90.2 22 0.00048 35.7 19.2 49 475-524 147-195 (203)
210 KOG1130|consensus 89.7 6.7 0.00014 42.5 13.3 279 81-405 13-342 (639)
211 COG4235 Cytochrome c biogenesi 89.6 6.7 0.00015 41.1 13.2 99 82-188 155-256 (287)
212 KOG2796|consensus 89.5 28 0.0006 35.8 21.5 138 160-298 178-320 (366)
213 PF13424 TPR_12: Tetratricopep 89.1 1.1 2.3E-05 37.1 5.9 65 195-289 6-71 (78)
214 PLN03098 LPA1 LOW PSII ACCUMUL 88.7 4.9 0.00011 44.8 12.0 66 156-223 72-141 (453)
215 PF13281 DUF4071: Domain of un 88.7 33 0.00071 37.8 18.3 107 80-196 140-261 (374)
216 COG4700 Uncharacterized protei 88.6 25 0.00054 34.2 18.5 134 154-289 84-218 (251)
217 KOG2796|consensus 88.4 7.6 0.00016 39.7 12.0 160 97-272 163-327 (366)
218 PF13424 TPR_12: Tetratricopep 88.4 1.6 3.5E-05 36.0 6.6 63 119-187 6-74 (78)
219 KOG1920|consensus 88.2 43 0.00094 41.7 20.1 116 343-495 932-1052(1265)
220 PLN03098 LPA1 LOW PSII ACCUMUL 88.1 5.8 0.00013 44.2 12.2 67 79-153 71-141 (453)
221 PF13281 DUF4071: Domain of un 87.3 51 0.0011 36.3 19.1 166 131-299 148-339 (374)
222 PF10300 DUF3808: Protein of u 87.3 30 0.00065 39.9 18.1 160 128-290 192-373 (468)
223 COG4105 ComL DNA uptake lipopr 87.2 39 0.00085 34.8 18.2 162 271-498 41-233 (254)
224 COG3629 DnrI DNA-binding trans 87.1 5.5 0.00012 41.8 10.8 75 128-203 157-236 (280)
225 PF13170 DUF4003: Protein of u 86.8 36 0.00078 36.5 17.1 151 523-697 78-241 (297)
226 COG4649 Uncharacterized protei 86.8 28 0.0006 33.5 13.9 137 160-297 60-200 (221)
227 KOG2041|consensus 86.7 71 0.0015 37.4 29.0 88 115-219 689-785 (1189)
228 KOG0553|consensus 86.7 5.8 0.00012 41.5 10.4 94 170-268 92-186 (304)
229 PF04097 Nic96: Nup93/Nic96; 86.5 46 0.001 39.8 19.6 64 131-195 118-188 (613)
230 PF04053 Coatomer_WDAD: Coatom 86.4 17 0.00038 41.3 15.2 155 135-371 272-427 (443)
231 COG5107 RNA14 Pre-mRNA 3'-end 86.2 4.1 8.9E-05 44.7 9.3 151 43-209 397-550 (660)
232 PF13371 TPR_9: Tetratricopept 86.1 4.1 8.8E-05 32.9 7.6 56 238-294 4-59 (73)
233 PRK15331 chaperone protein Sic 85.6 4.2 9E-05 38.9 8.1 90 132-223 45-134 (165)
234 PF10300 DUF3808: Protein of u 85.6 26 0.00057 40.3 16.4 164 90-257 195-375 (468)
235 COG4235 Cytochrome c biogenesi 85.4 36 0.00079 35.8 15.6 106 156-295 153-258 (287)
236 KOG2610|consensus 85.2 9.2 0.0002 40.4 11.0 153 95-256 115-274 (491)
237 smart00299 CLH Clathrin heavy 85.2 32 0.0007 32.0 15.5 57 160-218 8-64 (140)
238 PF04053 Coatomer_WDAD: Coatom 84.4 7.6 0.00016 44.2 11.1 127 131-290 302-428 (443)
239 PTZ00036 glycogen synthase kin 84.4 1.6 3.4E-05 50.1 5.9 29 851-879 333-361 (440)
240 COG1729 Uncharacterized protei 83.8 7.3 0.00016 40.3 9.6 24 475-498 221-244 (262)
241 COG3898 Uncharacterized membra 83.5 74 0.0016 34.8 24.0 25 475-499 194-218 (531)
242 KOG0550|consensus 82.0 88 0.0019 34.6 21.5 70 344-416 166-238 (486)
243 PF10602 RPN7: 26S proteasome 81.6 10 0.00022 37.2 9.5 63 160-222 37-101 (177)
244 PF09205 DUF1955: Domain of un 81.4 43 0.00094 30.8 12.1 136 358-539 14-152 (161)
245 KOG0659|consensus 80.7 0.91 2E-05 46.4 1.8 37 853-889 265-301 (318)
246 KOG4555|consensus 80.1 19 0.00041 32.9 9.5 92 133-226 52-147 (175)
247 PF13762 MNE1: Mitochondrial s 79.9 44 0.00096 31.4 12.4 115 79-211 10-132 (145)
248 PF08631 SPO22: Meiosis protei 79.9 87 0.0019 33.2 24.5 160 135-297 4-190 (278)
249 COG3629 DnrI DNA-binding trans 79.6 15 0.00032 38.7 10.2 78 235-355 159-236 (280)
250 PF09205 DUF1955: Domain of un 78.8 54 0.0012 30.2 12.4 136 136-296 14-152 (161)
251 PF07079 DUF1347: Protein of u 78.4 1.2E+02 0.0026 34.0 30.7 129 387-548 388-531 (549)
252 PF13512 TPR_18: Tetratricopep 78.1 22 0.00047 33.3 9.8 77 421-520 20-96 (142)
253 KOG1941|consensus 78.1 82 0.0018 34.1 14.9 226 95-371 18-271 (518)
254 KOG2610|consensus 77.7 61 0.0013 34.6 13.7 156 135-293 114-277 (491)
255 KOG0660|consensus 77.3 1.3 2.8E-05 47.2 1.8 102 762-880 212-321 (359)
256 PF04184 ST7: ST7 protein; In 77.0 1.4E+02 0.0029 34.1 16.9 29 345-373 294-322 (539)
257 PRK15331 chaperone protein Sic 76.5 25 0.00054 33.7 9.9 53 479-535 81-133 (165)
258 PF07035 Mic1: Colon cancer-as 76.5 76 0.0016 30.7 16.6 36 251-286 16-51 (167)
259 PF13762 MNE1: Mitochondrial s 75.9 12 0.00026 35.0 7.5 93 75-173 29-129 (145)
260 PF13176 TPR_7: Tetratricopept 75.3 6.1 0.00013 27.0 4.2 26 161-186 1-26 (36)
261 COG4649 Uncharacterized protei 75.2 83 0.0018 30.5 14.2 125 134-262 68-200 (221)
262 PF13525 YfiO: Outer membrane 75.0 95 0.0021 31.1 19.1 168 89-284 11-198 (203)
263 COG3118 Thioredoxin domain-con 74.9 1.1E+02 0.0025 32.2 14.9 147 133-282 143-290 (304)
264 COG3118 Thioredoxin domain-con 74.3 1.2E+02 0.0026 32.0 18.0 123 166-292 141-264 (304)
265 COG3898 Uncharacterized membra 74.2 1.4E+02 0.0031 32.7 27.8 285 85-406 84-391 (531)
266 KOG0581|consensus 73.6 1.2 2.7E-05 47.6 0.4 29 851-879 317-345 (364)
267 cd07869 STKc_PFTAIRE1 Catalyti 73.4 1.4 3E-05 47.5 0.9 27 851-877 270-296 (303)
268 PRK11906 transcriptional regul 73.3 1.7E+02 0.0036 33.2 17.0 137 84-223 252-401 (458)
269 PF09613 HrpB1_HrpK: Bacterial 73.1 79 0.0017 30.3 12.2 110 93-214 20-129 (160)
270 PF07035 Mic1: Colon cancer-as 73.1 93 0.002 30.1 17.2 57 381-439 92-148 (167)
271 KOG0666|consensus 72.4 1.6 3.6E-05 45.5 1.0 24 851-874 319-342 (438)
272 KOG0579|consensus 72.2 1.9 4.1E-05 49.2 1.5 26 851-876 271-296 (1187)
273 KOG1130|consensus 71.2 44 0.00095 36.6 11.1 91 347-437 196-301 (639)
274 COG0457 NrfG FOG: TPR repeat [ 70.6 1.1E+02 0.0024 29.8 24.0 199 83-290 59-262 (291)
275 PF10602 RPN7: 26S proteasome 70.4 85 0.0018 30.8 12.5 98 119-222 37-141 (177)
276 PF13512 TPR_18: Tetratricopep 70.4 46 0.001 31.1 9.9 81 471-552 12-92 (142)
277 PF13176 TPR_7: Tetratricopept 70.2 7.8 0.00017 26.5 3.8 23 349-371 2-24 (36)
278 PF13428 TPR_14: Tetratricopep 70.0 15 0.00032 26.4 5.4 28 161-188 3-30 (44)
279 PF13428 TPR_14: Tetratricopep 69.9 16 0.00035 26.2 5.6 36 129-165 6-41 (44)
280 PTZ00284 protein kinase; Provi 69.7 2.2 4.7E-05 49.4 1.3 28 851-878 420-447 (467)
281 KOG0543|consensus 69.5 49 0.0011 36.4 11.3 89 131-220 215-317 (397)
282 PF09613 HrpB1_HrpK: Bacterial 69.4 71 0.0015 30.6 11.1 78 354-432 52-130 (160)
283 cd07848 STKc_CDKL5 Catalytic d 69.3 2 4.4E-05 45.7 1.0 22 851-872 266-287 (287)
284 PHA03209 serine/threonine kina 69.2 1.8 3.8E-05 48.1 0.4 25 851-875 333-357 (357)
285 KOG4570|consensus 69.0 27 0.00059 36.8 8.7 104 77-188 58-164 (418)
286 KOG1585|consensus 67.0 1.6E+02 0.0034 30.3 14.1 54 512-571 196-252 (308)
287 cd07878 STKc_p38beta_MAPK11 Ca 65.9 3.1 6.6E-05 45.8 1.5 29 851-879 280-308 (343)
288 PF11848 DUF3368: Domain of un 65.5 6.3 0.00014 29.2 2.6 31 781-811 17-47 (48)
289 cd07868 STKc_CDK8 Catalytic do 65.3 2.4 5.1E-05 46.0 0.5 22 851-872 296-317 (317)
290 cd00923 Cyt_c_Oxidase_Va Cytoc 64.2 39 0.00084 29.2 7.3 62 140-202 23-84 (103)
291 KOG1941|consensus 64.0 1.7E+02 0.0036 31.8 13.5 129 350-496 126-273 (518)
292 PF02259 FAT: FAT domain; Int 64.0 2.2E+02 0.0048 31.0 17.0 58 381-439 149-212 (352)
293 PF13374 TPR_10: Tetratricopep 62.2 17 0.00037 25.2 4.5 29 159-187 2-30 (42)
294 cd07879 STKc_p38delta_MAPK13 C 62.2 3.4 7.4E-05 45.5 1.0 30 851-880 279-308 (342)
295 cd07873 STKc_PCTAIRE1 Catalyti 61.8 3.5 7.6E-05 44.3 1.0 29 851-879 268-296 (301)
296 PF02284 COX5A: Cytochrome c o 61.7 37 0.0008 29.6 6.8 69 133-202 17-87 (108)
297 TIGR02561 HrpB1_HrpK type III 61.7 1.2E+02 0.0025 28.7 10.6 66 355-421 53-119 (153)
298 KOG0550|consensus 61.4 2.7E+02 0.0058 31.0 15.4 169 23-209 183-372 (486)
299 TIGR02561 HrpB1_HrpK type III 61.3 1.5E+02 0.0032 28.0 11.7 53 242-296 23-76 (153)
300 PHA03211 serine/threonine kina 61.1 3.5 7.6E-05 47.4 0.9 24 851-874 437-460 (461)
301 COG5108 RPO41 Mitochondrial DN 61.1 83 0.0018 36.7 11.3 86 466-552 25-113 (1117)
302 cd07875 STKc_JNK1 Catalytic do 59.7 4.6 9.9E-05 44.9 1.5 29 851-879 300-328 (364)
303 cd07867 STKc_CDC2L6 Catalytic 58.9 3.9 8.4E-05 44.3 0.7 22 851-872 296-317 (317)
304 KOG0596|consensus 58.9 4.2 9.2E-05 46.0 1.0 26 851-876 609-634 (677)
305 KOG0276|consensus 58.8 1.6E+02 0.0034 34.3 12.8 98 172-290 650-747 (794)
306 cd07871 STKc_PCTAIRE3 Catalyti 58.4 4.6 9.9E-05 43.1 1.2 22 851-872 267-288 (288)
307 KOG1167|consensus 58.3 4.4 9.6E-05 44.2 1.0 29 851-879 363-391 (418)
308 PF00637 Clathrin: Region in C 58.1 3.5 7.6E-05 38.7 0.2 53 90-148 14-66 (143)
309 KOG4555|consensus 57.7 1.6E+02 0.0034 27.2 11.6 92 91-189 51-145 (175)
310 cd08227 PK_STRAD_alpha Pseudok 57.5 3.2 6.8E-05 45.4 -0.3 26 851-876 289-314 (327)
311 KOG4570|consensus 57.4 72 0.0016 33.8 9.3 50 244-293 115-164 (418)
312 cd05572 STKc_cGK_PKG Catalytic 57.2 4.6 0.0001 42.2 0.9 26 851-876 229-259 (262)
313 PF04184 ST7: ST7 protein; In 56.7 1.2E+02 0.0027 34.4 11.6 125 88-221 173-322 (539)
314 PHA03212 serine/threonine kina 56.2 4.8 0.0001 45.3 0.9 30 851-880 358-387 (391)
315 PF13374 TPR_10: Tetratricopep 54.2 25 0.00055 24.3 4.2 29 83-111 2-30 (42)
316 PF00637 Clathrin: Region in C 53.9 4.5 9.8E-05 38.0 0.2 85 131-222 14-98 (143)
317 cd05608 STKc_GRK1 Catalytic do 52.2 5.4 0.00012 42.3 0.4 26 851-876 234-264 (280)
318 cd07839 STKc_CDK5 Catalytic do 52.1 5.8 0.00013 42.0 0.7 22 851-872 263-284 (284)
319 cd07862 STKc_CDK6 Catalytic do 52.0 6.1 0.00013 42.1 0.8 22 851-872 269-290 (290)
320 cd07860 STKc_CDK2_3 Catalytic 51.9 6.8 0.00015 41.5 1.2 22 851-872 263-284 (284)
321 cd08216 PK_STRAD Pseudokinase 51.8 5.2 0.00011 43.2 0.3 28 851-878 277-304 (314)
322 cd07834 STKc_MAPK Catalytic do 51.7 5.9 0.00013 43.2 0.7 29 851-879 271-299 (330)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 51.4 83 0.0018 27.3 7.1 62 99-167 23-84 (103)
324 PF13431 TPR_17: Tetratricopep 51.4 18 0.00038 24.5 2.7 24 156-179 10-33 (34)
325 PF00515 TPR_1: Tetratricopept 51.3 36 0.00077 22.5 4.3 29 160-188 2-30 (34)
326 KOG2280|consensus 51.1 5.1E+02 0.011 31.2 31.6 353 121-531 386-794 (829)
327 cd07872 STKc_PCTAIRE2 Catalyti 51.1 6.2 0.00014 42.6 0.7 27 851-877 268-294 (309)
328 KOG1585|consensus 51.0 3E+02 0.0065 28.4 14.6 87 349-435 153-251 (308)
329 cd07880 STKc_p38gamma_MAPK12 C 51.0 6.7 0.00015 43.2 1.0 30 851-880 280-309 (343)
330 KOG0661|consensus 50.2 24 0.00052 39.5 4.9 30 851-880 273-302 (538)
331 PLN03225 Serine/threonine-prot 50.1 7.9 0.00017 45.9 1.4 28 851-878 432-459 (566)
332 cd06610 STKc_OSR1_SPAK Catalyt 49.9 6.8 0.00015 40.9 0.8 22 851-872 246-267 (267)
333 KOG0543|consensus 49.9 1.5E+02 0.0032 32.8 10.6 56 131-187 264-319 (397)
334 KOG4648|consensus 49.7 35 0.00077 36.3 5.8 77 93-185 107-184 (536)
335 COG4455 ImpE Protein of avirul 49.6 1E+02 0.0022 31.1 8.5 72 131-203 8-81 (273)
336 cd07849 STKc_ERK1_2_like Catal 49.6 8.7 0.00019 42.0 1.6 30 851-880 274-303 (336)
337 cd07859 STKc_TDY_MAPK_plant Ca 49.5 6.8 0.00015 42.8 0.7 29 851-879 272-300 (338)
338 PF00515 TPR_1: Tetratricopept 48.9 21 0.00045 23.6 2.9 25 382-406 5-29 (34)
339 cd07858 STKc_TEY_MAPK_plant Ca 48.6 6.8 0.00015 43.0 0.5 30 851-880 273-302 (337)
340 cd07863 STKc_CDK4 Catalytic do 48.6 7.2 0.00016 41.4 0.7 22 851-872 267-288 (288)
341 PF07163 Pex26: Pex26 protein; 48.5 1.3E+02 0.0028 31.6 9.4 87 201-287 90-181 (309)
342 TIGR02508 type_III_yscG type I 48.5 1.8E+02 0.0038 25.5 8.6 88 98-199 20-107 (115)
343 COG5159 RPN6 26S proteasome re 48.5 2.4E+02 0.0052 29.6 11.3 22 268-289 129-150 (421)
344 cd07874 STKc_JNK3 Catalytic do 48.0 7.6 0.00016 42.9 0.8 28 851-878 293-320 (355)
345 KOG2063|consensus 47.9 6.5E+02 0.014 31.4 18.7 118 85-208 506-640 (877)
346 KOG0578|consensus 47.6 7 0.00015 44.4 0.4 23 851-873 505-527 (550)
347 PF13431 TPR_17: Tetratricopep 47.5 25 0.00054 23.7 3.0 24 261-284 10-33 (34)
348 PF13934 ELYS: Nuclear pore co 47.4 88 0.0019 32.0 8.4 94 339-439 72-168 (226)
349 PF13929 mRNA_stabil: mRNA sta 47.2 3.8E+02 0.0082 28.5 13.6 109 140-248 144-257 (292)
350 cd07832 STKc_CCRK Catalytic do 47.0 7.9 0.00017 41.0 0.7 23 851-873 264-286 (286)
351 cd07851 STKc_p38 Catalytic dom 46.9 11 0.00023 41.5 1.7 30 851-880 280-309 (343)
352 cd05590 STKc_nPKC_eta Catalyti 46.9 7.2 0.00016 42.4 0.4 27 851-877 229-261 (320)
353 cd07852 STKc_MAPK15 Catalytic 46.6 10 0.00022 41.5 1.6 30 851-880 277-306 (337)
354 cd00280 TRFH Telomeric Repeat 46.5 1.4E+02 0.0031 29.2 8.8 48 680-727 118-165 (200)
355 PF11207 DUF2989: Protein of u 46.1 1.4E+02 0.0031 29.7 9.1 29 338-366 170-198 (203)
356 PF00069 Pkinase: Protein kina 46.0 8.5 0.00018 40.0 0.8 22 851-872 239-260 (260)
357 PF02284 COX5A: Cytochrome c o 45.9 78 0.0017 27.7 6.3 61 101-168 28-88 (108)
358 COG3947 Response regulator con 45.9 1E+02 0.0023 32.4 8.3 115 78-196 222-355 (361)
359 cd05631 STKc_GRK4 Catalytic do 45.5 5.6 0.00012 42.4 -0.8 29 851-879 238-271 (285)
360 PHA03390 pk1 serine/threonine- 45.4 8.3 0.00018 40.6 0.6 24 851-874 243-267 (267)
361 cd05571 STKc_PKB Catalytic dom 44.7 8.6 0.00019 41.9 0.6 25 851-875 228-257 (323)
362 PF02259 FAT: FAT domain; Int 44.4 4.5E+02 0.0097 28.5 16.2 191 200-406 4-212 (352)
363 cd07861 STKc_CDK1_euk Catalyti 43.9 9.4 0.0002 40.4 0.7 22 851-872 264-285 (285)
364 PHA03207 serine/threonine kina 43.7 38 0.00083 38.0 5.7 25 851-875 357-381 (392)
365 PTZ00024 cyclin-dependent prot 43.6 12 0.00027 40.8 1.6 29 851-879 295-323 (335)
366 PF11207 DUF2989: Protein of u 43.3 1.8E+02 0.004 29.0 9.3 72 212-284 124-198 (203)
367 cd05587 STKc_cPKC Catalytic do 43.1 8.4 0.00018 41.9 0.2 27 851-877 234-265 (324)
368 PF07719 TPR_2: Tetratricopept 43.0 57 0.0012 21.2 4.3 28 161-188 3-30 (34)
369 cd07855 STKc_ERK5 Catalytic do 43.0 9.4 0.0002 41.7 0.6 30 851-880 276-305 (334)
370 KOG1464|consensus 42.8 4.1E+02 0.0089 27.7 17.1 188 76-290 19-217 (440)
371 cd07853 STKc_NLK Catalytic dom 42.7 11 0.00023 42.0 1.0 26 851-876 270-295 (372)
372 cd07865 STKc_CDK9 Catalytic do 42.7 10 0.00022 40.7 0.8 22 851-872 289-310 (310)
373 PLN00009 cyclin-dependent kina 42.2 8.1 0.00018 41.2 -0.1 27 851-877 266-292 (294)
374 KOG0592|consensus 42.1 12 0.00026 42.4 1.2 75 762-879 271-348 (604)
375 KOG1464|consensus 42.0 4.2E+02 0.0092 27.6 16.7 318 339-701 19-364 (440)
376 cd05576 STKc_RPK118_like Catal 41.6 10 0.00022 39.0 0.6 22 851-872 211-237 (237)
377 cd06636 STKc_MAP4K4_6 Catalyti 41.6 11 0.00023 39.9 0.7 22 851-872 261-282 (282)
378 cd07854 STKc_MAPK4_6 Catalytic 41.6 14 0.0003 40.7 1.6 27 851-877 282-308 (342)
379 cd07870 STKc_PFTAIRE2 Catalyti 41.1 11 0.00024 40.1 0.8 22 851-872 270-291 (291)
380 KOG4521|consensus 41.0 8.8E+02 0.019 31.0 22.6 125 709-870 1312-1437(1480)
381 PF08631 SPO22: Meiosis protei 40.8 4.6E+02 0.01 27.7 23.6 199 85-289 38-271 (278)
382 PF07719 TPR_2: Tetratricopept 40.7 31 0.00068 22.6 2.7 22 384-405 7-28 (34)
383 cd07836 STKc_Pho85 Catalytic d 40.7 11 0.00025 39.7 0.7 22 851-872 263-284 (284)
384 KOG1586|consensus 40.5 3.5E+02 0.0075 27.8 10.7 158 96-269 27-194 (288)
385 PTZ00426 cAMP-dependent protei 40.4 12 0.00027 41.0 1.0 26 851-876 261-291 (340)
386 cd05614 STKc_MSK2_N N-terminal 40.2 13 0.00028 40.6 1.1 26 851-876 244-274 (332)
387 cd07847 STKc_CDKL1_4 Catalytic 40.2 12 0.00026 39.6 0.8 22 851-872 265-286 (286)
388 cd07842 STKc_CDK8_like Catalyt 40.1 12 0.00026 40.3 0.8 22 851-872 295-316 (316)
389 COG0457 NrfG FOG: TPR repeat [ 39.7 3.5E+02 0.0076 26.0 27.5 117 97-220 37-156 (291)
390 cd05633 STKc_GRK3 Catalytic do 39.5 13 0.00028 39.4 0.9 30 851-880 232-266 (279)
391 KOG0599|consensus 39.0 9.7 0.00021 39.2 -0.1 23 851-873 265-287 (411)
392 cd07876 STKc_JNK2 Catalytic do 38.9 14 0.00031 40.8 1.2 27 851-877 297-323 (359)
393 cd05591 STKc_nPKC_epsilon Cata 38.8 11 0.00024 40.9 0.3 26 851-876 229-261 (321)
394 PF09868 DUF2095: Uncharacteri 38.6 1.1E+02 0.0024 27.1 6.1 37 463-502 58-94 (128)
395 cd05620 STKc_nPKC_delta Cataly 38.5 11 0.00025 40.7 0.3 26 851-876 229-255 (316)
396 PF07721 TPR_4: Tetratricopept 38.5 55 0.0012 20.4 3.3 21 350-370 5-25 (26)
397 COG2976 Uncharacterized protei 38.4 3.9E+02 0.0085 26.6 10.6 131 83-224 54-189 (207)
398 cd07843 STKc_CDC2L1 Catalytic 38.3 13 0.00028 39.6 0.7 22 851-872 272-293 (293)
399 cd07845 STKc_CDK10 Catalytic d 38.2 15 0.00033 39.5 1.2 28 851-878 272-299 (309)
400 COG1747 Uncharacterized N-term 38.0 6.8E+02 0.015 28.8 15.6 167 129-300 71-241 (711)
401 PLN00034 mitogen-activated pro 37.9 14 0.0003 40.8 0.9 25 851-875 310-334 (353)
402 PF04097 Nic96: Nup93/Nic96; 37.6 7.9E+02 0.017 29.5 22.9 64 82-153 111-181 (613)
403 cd07831 STKc_MOK Catalytic dom 37.3 14 0.00031 38.8 0.9 22 851-872 261-282 (282)
404 cd05123 STKc_AGC Catalytic dom 37.3 13 0.00028 38.3 0.5 22 851-872 226-250 (250)
405 cd06611 STKc_SLK_like Catalyti 37.2 13 0.00027 39.4 0.4 28 851-878 244-271 (280)
406 cd05612 STKc_PRKX_like Catalyt 37.2 14 0.0003 39.5 0.7 28 851-878 231-263 (291)
407 PHA03210 serine/threonine kina 36.6 13 0.00028 43.4 0.4 25 851-875 436-460 (501)
408 KOG0658|consensus 36.5 11 0.00025 40.4 -0.1 28 851-878 288-315 (364)
409 cd05570 STKc_PKC Catalytic dom 36.5 13 0.00028 40.4 0.3 26 851-876 229-259 (318)
410 cd07838 STKc_CDK4_6_like Catal 36.4 15 0.00032 38.8 0.8 22 851-872 266-287 (287)
411 cd06659 STKc_PAK6 Catalytic do 36.3 17 0.00037 38.9 1.3 29 851-879 253-281 (297)
412 cd07841 STKc_CDK7 Catalytic do 36.0 17 0.00037 38.7 1.2 30 851-880 264-293 (298)
413 cd08226 PK_STRAD_beta Pseudoki 35.9 8.1 0.00018 42.1 -1.4 29 851-879 290-318 (328)
414 cd07866 STKc_BUR1 Catalytic do 35.8 16 0.00035 39.2 0.9 22 851-872 290-311 (311)
415 cd07837 STKc_CdkB_plant Cataly 35.4 17 0.00036 38.7 1.0 23 851-873 273-295 (295)
416 cd05618 STKc_aPKC_iota Catalyt 35.3 16 0.00035 39.9 0.8 26 851-876 238-269 (329)
417 cd05611 STKc_Rim15_like Cataly 35.0 13 0.00029 38.6 0.2 25 851-875 230-257 (260)
418 KOG0276|consensus 34.8 3.3E+02 0.0071 31.9 10.7 102 133-255 646-747 (794)
419 KOG0671|consensus 34.8 17 0.00037 39.4 0.9 25 853-877 390-414 (415)
420 cd05574 STKc_phototropin_like 34.7 16 0.00035 39.4 0.7 29 851-879 267-299 (316)
421 cd05588 STKc_aPKC Catalytic do 34.5 15 0.00033 40.0 0.5 26 851-876 238-269 (329)
422 KOG0604|consensus 33.9 42 0.00092 35.4 3.5 60 793-877 265-330 (400)
423 cd05581 STKc_PDK1 Catalytic do 33.9 15 0.00033 38.6 0.3 22 851-872 255-280 (280)
424 KOG0198|consensus 33.9 21 0.00046 38.4 1.4 27 851-877 258-284 (313)
425 KOG2297|consensus 33.9 6.1E+02 0.013 27.1 14.4 72 19-94 40-122 (412)
426 cd06651 STKc_MEKK3 Catalytic d 33.7 18 0.00039 37.8 0.9 23 851-873 243-265 (266)
427 cd07846 STKc_CDKL2_3 Catalytic 33.6 18 0.0004 38.2 0.9 22 851-872 265-286 (286)
428 cd05630 STKc_GRK6 Catalytic do 33.5 11 0.00023 40.2 -0.9 28 851-878 238-270 (285)
429 cd07835 STKc_CDK1_like Catalyt 33.3 17 0.00037 38.4 0.7 22 851-872 262-283 (283)
430 cd06648 STKc_PAK_II Catalytic 33.2 20 0.00043 38.1 1.1 27 851-877 251-277 (285)
431 PF10579 Rapsyn_N: Rapsyn N-te 33.1 62 0.0014 26.8 3.6 53 479-532 16-68 (80)
432 cd06649 PKc_MEK2 Catalytic dom 33.1 15 0.00032 40.2 0.1 27 851-877 283-309 (331)
433 KOG1258|consensus 33.1 8.6E+02 0.019 28.5 34.4 411 82-551 44-484 (577)
434 cd05585 STKc_YPK1_like Catalyt 32.9 19 0.0004 39.0 0.9 25 851-875 226-253 (312)
435 cd07850 STKc_JNK Catalytic dom 32.8 19 0.0004 39.7 0.9 25 851-875 293-317 (353)
436 cd06630 STKc_MEKK1 Catalytic d 32.8 19 0.00041 37.6 0.9 22 851-872 246-267 (268)
437 COG4455 ImpE Protein of avirul 32.7 2E+02 0.0042 29.2 7.6 76 86-168 4-81 (273)
438 PF13181 TPR_8: Tetratricopept 32.3 1.1E+02 0.0024 19.9 4.4 27 161-187 3-29 (34)
439 cd06637 STKc_TNIK Catalytic do 32.3 19 0.00041 37.7 0.8 22 851-872 251-272 (272)
440 cd05594 STKc_PKB_alpha Catalyt 32.2 17 0.00038 39.4 0.5 26 851-876 229-259 (325)
441 cd07829 STKc_CDK_like Catalyti 32.0 20 0.00043 37.7 0.9 22 851-872 261-282 (282)
442 cd06612 STKc_MST1_2 Catalytic 31.9 17 0.00036 37.7 0.2 22 851-872 235-256 (256)
443 cd08225 STKc_Nek5 Catalytic do 31.9 19 0.00041 37.3 0.6 22 851-872 236-257 (257)
444 PF10579 Rapsyn_N: Rapsyn N-te 31.9 1.2E+02 0.0026 25.2 5.0 46 136-181 18-65 (80)
445 cd06650 PKc_MEK1 Catalytic dom 31.8 15 0.00033 40.1 -0.0 26 851-876 281-306 (333)
446 KOG1550|consensus 31.7 6.1E+02 0.013 30.0 13.3 161 88-261 253-429 (552)
447 cd05577 STKc_GRK Catalytic dom 31.6 19 0.0004 38.0 0.6 29 851-879 231-264 (277)
448 cd05579 STKc_MAST_like Catalyt 31.6 18 0.0004 37.4 0.5 25 851-875 236-263 (265)
449 cd05613 STKc_MSK1_N N-terminal 31.4 16 0.00034 38.8 0.0 29 851-879 245-278 (290)
450 KOG2114|consensus 31.4 1.1E+03 0.023 29.1 29.2 182 87-293 338-519 (933)
451 PF04762 IKI3: IKI3 family; I 31.0 4.1E+02 0.0089 33.7 12.1 126 88-223 699-843 (928)
452 PF04090 RNA_pol_I_TF: RNA pol 31.0 5.5E+02 0.012 25.7 11.8 35 484-518 154-188 (199)
453 cd06605 PKc_MAPKK Catalytic do 31.0 20 0.00043 37.3 0.7 25 851-875 239-263 (265)
454 PRK10548 flagellar biosynthesi 30.9 3.2E+02 0.0068 24.9 8.2 31 762-792 62-96 (121)
455 TIGR03504 FimV_Cterm FimV C-te 30.6 84 0.0018 22.8 3.6 24 165-188 5-28 (44)
456 cd05118 STKc_CMGC Catalytic do 30.5 21 0.00046 37.5 0.8 22 851-872 262-283 (283)
457 PF13929 mRNA_stabil: mRNA sta 30.4 6.9E+02 0.015 26.6 15.8 67 337-403 193-263 (292)
458 PF09868 DUF2095: Uncharacteri 30.4 1.8E+02 0.004 25.8 6.2 24 131-154 68-91 (128)
459 cd06644 STKc_STK10_LOK Catalyt 30.3 23 0.00051 37.6 1.1 30 851-880 251-280 (292)
460 COG3947 Response regulator con 30.1 7E+02 0.015 26.6 14.6 148 140-290 149-339 (361)
461 KOG0670|consensus 30.0 21 0.00046 40.3 0.6 23 851-873 728-750 (752)
462 KOG0667|consensus 29.9 22 0.00048 41.2 0.8 30 851-880 484-513 (586)
463 cd05605 STKc_GRK4_like Catalyt 29.8 24 0.00051 37.5 1.0 25 851-875 238-267 (285)
464 cd05593 STKc_PKB_gamma Catalyt 29.4 24 0.00053 38.4 1.1 26 851-876 228-258 (328)
465 cd05595 STKc_PKB_beta Catalyti 29.4 26 0.00056 38.1 1.3 26 851-876 228-258 (323)
466 PRK11619 lytic murein transgly 29.4 1.1E+03 0.023 28.5 33.9 60 345-404 311-372 (644)
467 cd05582 STKc_RSK_N N-terminal 29.2 23 0.0005 38.3 0.8 26 851-876 231-261 (318)
468 TIGR03504 FimV_Cterm FimV C-te 29.2 1.1E+02 0.0024 22.2 4.0 25 130-154 5-29 (44)
469 cd06616 PKc_MKK4 Catalytic dom 29.1 20 0.00044 37.9 0.4 30 851-880 249-278 (288)
470 cd07864 STKc_CDK12 Catalytic d 29.1 24 0.00053 37.6 1.0 22 851-872 281-302 (302)
471 PF10366 Vps39_1: Vacuolar sor 28.8 2.4E+02 0.0052 25.1 7.0 27 161-187 41-67 (108)
472 PF11848 DUF3368: Domain of un 28.6 1.7E+02 0.0037 21.6 5.1 33 135-167 13-45 (48)
473 cd06629 STKc_MAPKKK_Bck1_like 28.5 23 0.0005 37.1 0.6 22 851-872 251-272 (272)
474 PRK10564 maltose regulon perip 28.5 97 0.0021 32.9 5.1 47 155-201 252-299 (303)
475 cd07830 STKc_MAK_like Catalyti 28.3 28 0.0006 36.7 1.2 22 851-872 262-283 (283)
476 PRK11906 transcriptional regul 28.2 9.4E+02 0.02 27.4 16.1 148 139-289 273-432 (458)
477 KOG0403|consensus 28.1 9.2E+02 0.02 27.3 20.7 177 128-321 218-402 (645)
478 cd06631 STKc_YSK4 Catalytic do 28.0 24 0.00053 36.7 0.7 22 851-872 244-265 (265)
479 cd05580 STKc_PKA Catalytic dom 27.9 27 0.00058 37.1 1.0 26 851-876 231-261 (290)
480 PF10366 Vps39_1: Vacuolar sor 27.8 1.2E+02 0.0027 26.9 5.0 26 381-406 42-67 (108)
481 PTZ00263 protein kinase A cata 27.7 25 0.00054 38.3 0.8 25 851-875 248-277 (329)
482 KOG2168|consensus 27.6 1.2E+03 0.027 28.6 28.3 174 235-423 331-510 (835)
483 cd05601 STKc_CRIK Catalytic do 27.4 27 0.00059 38.0 1.0 24 851-875 246-269 (330)
484 cd08223 STKc_Nek4 Catalytic do 27.4 26 0.00056 36.2 0.8 22 851-872 236-257 (257)
485 PF13174 TPR_6: Tetratricopept 27.3 87 0.0019 20.1 3.2 23 166-188 7-29 (33)
486 PHA02875 ankyrin repeat protei 27.2 7.3E+02 0.016 27.7 12.7 188 304-541 4-195 (413)
487 KOG4077|consensus 27.2 3.5E+02 0.0076 24.8 7.5 46 143-188 68-113 (149)
488 COG4003 Uncharacterized protei 27.0 1.8E+02 0.0039 24.1 5.2 68 448-538 13-80 (98)
489 KOG2066|consensus 26.9 1.2E+03 0.026 28.3 19.8 263 23-308 370-744 (846)
490 cd08819 CARD_MDA5_2 Caspase ac 26.9 4E+02 0.0086 22.7 7.4 39 136-179 48-86 (88)
491 cd08218 STKc_Nek1 Catalytic do 26.9 25 0.00054 36.4 0.5 22 851-872 235-256 (256)
492 COG5159 RPN6 26S proteasome re 26.8 7.8E+02 0.017 26.0 20.8 58 680-737 253-313 (421)
493 cd06615 PKc_MEK Catalytic doma 26.8 24 0.00053 37.9 0.5 25 851-875 269-293 (308)
494 cd08215 STKc_Nek Catalytic dom 26.7 28 0.00061 35.8 0.9 22 851-872 237-258 (258)
495 cd06623 PKc_MAPKK_plant_like C 26.5 22 0.00048 36.9 0.0 26 851-876 238-263 (264)
496 cd05584 STKc_p70S6K Catalytic 26.3 30 0.00066 37.5 1.1 25 851-875 233-262 (323)
497 cd07844 STKc_PCTAIRE_like Cata 25.9 29 0.00063 36.8 0.9 22 851-872 270-291 (291)
498 TIGR02508 type_III_yscG type I 25.8 1.9E+02 0.004 25.4 5.3 67 43-121 39-105 (115)
499 PF07163 Pex26: Pex26 protein; 25.7 5.5E+02 0.012 27.2 9.7 87 88-182 88-181 (309)
500 cd06624 STKc_ASK Catalytic dom 25.7 30 0.00065 36.1 0.9 22 851-872 247-268 (268)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-63 Score=615.41 Aligned_cols=655 Identities=14% Similarity=0.107 Sum_probs=576.4
Q ss_pred HHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHH
Q psy767 40 VLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRV 119 (902)
Q Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 119 (902)
..+...++.++.++++.|++++|..+|+.|.. .|++|+..+|+.++.+|.+.+.++.+.+++..+.+.|..|+..
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~-----~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 122 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQE-----LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR 122 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHh-----cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCch
Confidence 34566788999999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q psy767 120 TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTK 199 (902)
Q Consensus 120 t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ 199 (902)
.++++ |++|++.|+++.|.++|++|.+ ||..+||+||.+|++.|++++|+++|++|...|+.||..||++
T Consensus 123 ~~n~l------i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ 192 (857)
T PLN03077 123 LGNAM------LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192 (857)
T ss_pred HHHHH------HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 99999 9999999999999999999975 5679999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q psy767 200 LMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 279 (902)
Q Consensus 200 ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~ 279 (902)
++++|+..+++..+.+++..+.+.+..++...++.++..|+++|+++.|.++|++|. .||.++||+||.+|++.|+
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~ 268 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGE 268 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999997 6899999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHc
Q psy767 280 MDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKH 359 (902)
Q Consensus 280 ~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~ 359 (902)
+++|+++|.+|...|+.|+..++..++..|...+..+.+.+++. .+.+.|+.||..+||+||.+|+++
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~------------~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG------------YVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH------------HHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999986 489999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHH
Q psy767 360 GDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNT 436 (902)
Q Consensus 360 g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~ 436 (902)
|++++|.++|++|.. ++..+|+++|.+|++.|++++|+++|++|.+ .|+.||..| ++.+|++.|++++|.++++.
T Consensus 337 g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 337 GSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred CCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999999975 4777899999999999999999999999998 899999886 58889999999999999999
Q ss_pred HHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHH
Q psy767 437 LARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRH 515 (902)
Q Consensus 437 m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~ 515 (902)
|.+. ++.++. .+++ +|.+|+++|++++|.++|+.|... +..+||++|.+
T Consensus 415 ~~~~-g~~~~~-----------------------~~~n~Li~~y~k~g~~~~A~~vf~~m~~~------d~vs~~~mi~~ 464 (857)
T PLN03077 415 AERK-GLISYV-----------------------VVANALIEMYSKCKCIDKALEVFHNIPEK------DVISWTSIIAG 464 (857)
T ss_pred HHHh-CCCcch-----------------------HHHHHHHHHHHHcCCHHHHHHHHHhCCCC------CeeeHHHHHHH
Confidence 9876 333332 3444 888899999999999999999764 45689999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcch---------------HHH
Q psy767 516 MVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPW---------------KGE 580 (902)
Q Consensus 516 ~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~---------------~~~ 580 (902)
|++.|+ .++|+.+|++|.. ++.||..||++++.++ + +.|.++. +.++ ...
T Consensus 465 ~~~~g~-~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~-~---~~g~l~~---------~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 465 LRLNNR-CFEALIFFRQMLL-TLKPNSVTLIAALSAC-A---RIGALMC---------GKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred HHHCCC-HHHHHHHHHHHHh-CCCCCHhHHHHHHHHH-h---hhchHHH---------hHHHHHHHHHhCCCccceechH
Confidence 999999 9999999999986 6999999999999998 6 6676655 3220 011
Q ss_pred HHHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhh----hHHHHHHHHHHHHHHhCCCCChHHHHHhhhccCC-CCC
Q psy767 581 LLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSF----LDAEVLRILQVAEAEFGVGSNTETLRDYVLPVLS-PPN 655 (902)
Q Consensus 581 ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~----~~~~al~ll~~m~~~~g~~P~~~t~~~lv~~~~~-~~~ 655 (902)
+++.+.+.|+.+.+..+|.-. .|+..+|+.+|.+. ..++|+++|++| .+.|+.||..||..++.+|.+ +..
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M-~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRM-VESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCCcccHHHHHHHHhhcChH
Confidence 566777788888888888765 56689999999544 499999999999 999999999999999999998 444
Q ss_pred CChHHHHHHHH-hcCCCCccchHHHHHHH-HHhcCHHHHHHHHHHhhhhhchhhccchhhhhhhccCCchhHHHHHHHHH
Q psy767 656 QVSGEVFSQLR-SVGVTIGSITSAYVVHM-LRQHNLKEAALLAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLVTVVRAVC 733 (902)
Q Consensus 656 ~~~~~~~~~l~-~~g~~~~~~~~~~l~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 733 (902)
+...++++.|+ +.|+.|+..++.+|+.+ +|.|++++|.+++++|+..++..+|...+. +|+..++.+......+.+.
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~-ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN-ACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHH
Confidence 44555899998 79999999999999999 799999999999999987788777766555 6788888887777766665
Q ss_pred hhhhcCCCcchhhhhhhhhhhhhhhhhhhHHHHH-HHHHHHHhhcCcchhhHHHHHHHHHHhccccccccch
Q psy767 734 ENWEKGEEGEKEEEGEEKTAGQLIDMDRIFAGNV-LLDIYKATRQDPNVVSHLEQLLNAFVEHAIPISAFSS 804 (902)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (902)
+ ++ |++...++ |.+++.+..+ .+...++.+.+++.|+.-++..+
T Consensus 685 ~-l~----------------------p~~~~~y~ll~n~ya~~g~----~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 685 E-LD----------------------PNSVGYYILLCNLYADAGK----WDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred h-hC----------------------CCCcchHHHHHHHHHHCCC----hHHHHHHHHHHHHcCCCCCCCcc
Confidence 2 22 22233333 4456654443 57789999999999999877654
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.1e-63 Score=611.75 Aligned_cols=599 Identities=13% Similarity=0.098 Sum_probs=518.0
Q ss_pred HHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHH
Q psy767 42 LVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY 121 (902)
Q Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 121 (902)
+..+++.+++.|++.|+++.|.++|++|.. ||+.+||++|.+|++.|++++|+++|++|...|+.||.+||
T Consensus 120 ~~~~~n~li~~~~~~g~~~~A~~~f~~m~~---------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~ 190 (857)
T PLN03077 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPE---------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190 (857)
T ss_pred CchHHHHHHHHHHhCCChHHHHHHHhcCCC---------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 455778999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHH-----------------------------hHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC
Q psy767 122 QQLIS-----------------------------NSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA 172 (902)
Q Consensus 122 ~~ll~-----------------------------~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~ 172 (902)
+++++ +|+||.+|+++|+++.|.++|++|.. ||.++||+||.+|++.
T Consensus 191 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~ 266 (857)
T PLN03077 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFEN 266 (857)
T ss_pred HHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhC
Confidence 99887 38899999999999999999999975 5669999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q psy767 173 NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGIL 252 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~ 252 (902)
|++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.+++..+.+.+..++..+|+.++..|+++|++++|.++|
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhccc
Q psy767 253 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWL 332 (902)
Q Consensus 253 ~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (902)
++|. .||..+||+||.+|++.|++++|+++|++|...++.|+..++..++..+...+..+.+.+++.
T Consensus 347 ~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~--------- 413 (857)
T PLN03077 347 SRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE--------- 413 (857)
T ss_pred hhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH---------
Confidence 9997 689999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCC
Q psy767 333 EGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSA 412 (902)
Q Consensus 333 ~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 412 (902)
.+.+.|+.|+..+|++||++|+++|++++|.++|++|... +..+|+++|.+|++.|+.++|+++|++|.. ++.|
T Consensus 414 ---~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~p 487 (857)
T PLN03077 414 ---LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKP 487 (857)
T ss_pred ---HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCC
Confidence 4899999999999999999999999999999999999864 677899999999999999999999999975 4999
Q ss_pred CHHH---HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHH
Q psy767 413 DAAN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAY 489 (902)
Q Consensus 413 d~~t---~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~ 489 (902)
|..| ++.+|++.|.++.+.+++..+.+. ++.++.. ....+|.+|+++|++++|.
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~----------------------~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGF----------------------LPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccce----------------------echHHHHHHHHcCCHHHHH
Confidence 9987 478889999999999999999875 3433321 1234889999999999999
Q ss_pred HHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhh
Q psy767 490 RIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCV 569 (902)
Q Consensus 490 ~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~ 569 (902)
++|+.+ . + +..+||++|.+|+++|+ .++|+++|++|.+.|+.||..||+++++++ + +.|.+++
T Consensus 545 ~~f~~~-~----~--d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~-~---~~g~v~e----- 607 (857)
T PLN03077 545 NQFNSH-E----K--DVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPDEVTFISLLCAC-S---RSGMVTQ----- 607 (857)
T ss_pred HHHHhc-C----C--ChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCcccHHHHHHHH-h---hcChHHH-----
Confidence 999998 2 1 56789999999999999 999999999999999999999999999998 7 8999999
Q ss_pred hhccCcchHHHHHHHHH-HhhHHHhhhhhhhcccccccchhhhHHHH----HhhhHHHHHHHHHHHHHHhCCCCChHHHH
Q psy767 570 NQFRATPWKGELLKRFI-QAEDAACLQRITDLSTSIHGEVNSLYDLM----LSFLDAEVLRILQVAEAEFGVGSNTETLR 644 (902)
Q Consensus 570 ~~~~a~~~~~~ll~~m~-~~g~~~~~~~~~~~~~~i~p~~~~~~~li----~~~~~~~al~ll~~m~~~~g~~P~~~t~~ 644 (902)
|.. +|+.|. +.| +.|+..+|+.++ ++|.+++|.+++++| +++||..+|.
T Consensus 608 ----a~~----~f~~M~~~~g--------------i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd~~~~~ 661 (857)
T PLN03077 608 ----GLE----YFHSMEEKYS--------------ITPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPDPAVWG 661 (857)
T ss_pred ----HHH----HHHHHHHHhC--------------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCCHHHHH
Confidence 888 999998 566 666688999888 455599999999998 5899999999
Q ss_pred HhhhccCC-CCCCChHHHHHHHHhcCCCCcc-chHHHHH-HHHHhcCHHHHHHHHHHhhhhhc---h-hhccc------h
Q psy767 645 DYVLPVLS-PPNQVSGEVFSQLRSVGVTIGS-ITSAYVV-HMLRQHNLKEAALLAKSFRAHYA---K-VVVRP------V 711 (902)
Q Consensus 645 ~lv~~~~~-~~~~~~~~~~~~l~~~g~~~~~-~~~~~l~-~~~~~g~~~~a~~~~~~~~~~~~---~-~~~~~------~ 711 (902)
.++.+|.. ...+..+.+.+.+-+ ..|+. .++.++. .+++.|+|++|.++.+.|+...- + ..|.. .
T Consensus 662 aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~ 739 (857)
T PLN03077 662 ALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA 739 (857)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEE
Confidence 99999866 333333334444444 45554 3333333 34799999999999999886411 1 11211 1
Q ss_pred hhhhhhccCCchhHHHHHHHHHhhhhcCC
Q psy767 712 LAVSYLRTQDLPSLVTVVRAVCENWEKGE 740 (902)
Q Consensus 712 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
|..+=+.+.+.+..-..++.+..++.+.+
T Consensus 740 f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 768 (857)
T PLN03077 740 FLTDDESHPQIKEINTVLEGFYEKMKASG 768 (857)
T ss_pred EecCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 23333344445555566666666665433
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.1e-58 Score=554.81 Aligned_cols=606 Identities=14% Similarity=0.130 Sum_probs=484.8
Q ss_pred cccccccCCCCCCCccchHHhhcHHHHHHHhccc--cchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCC-
Q psy767 2 VKLSSNVSDTATPVGITTEVSEATAEVTTVLGAL--GAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELD- 78 (902)
Q Consensus 2 ~~~~~~~~~~~~~~g~~~~~s~~~~~a~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g- 78 (902)
+|+..|..++..+.+.+...+..+.+-....... +.....+...|..+...+++.|++++|..+|++|.. .|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-----~gv 401 (1060)
T PLN03218 327 LDKKNNGVKDAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-----RGL 401 (1060)
T ss_pred hhhccCCccccccccccchhhhccchhhhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-----CCC
Confidence 4666677777777766644443333333222211 222234566777888889999999999999999987 56
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 158 (902)
++|+..+++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.+ |.+|++.|+++.|.++|+.|.+.|+.||
T Consensus 402 v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L------L~a~~k~g~~e~A~~lf~~M~~~Gl~pD 471 (1060)
T PLN03218 402 LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML------MSVCASSQDIDGALRVLRLVQEAGLKAD 471 (1060)
T ss_pred CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH------HHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 467888899999999999999999999999974 999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHH
Q psy767 159 EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL 238 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (902)
..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|+.|...+..|+..+|+.++..
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHH
Q psy767 239 ILVSSDMASAEGILTMMSQ--AGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYID 316 (902)
Q Consensus 239 ~~~~g~~~~A~~l~~~m~~--~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~ 316 (902)
+++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|++
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~--------------------------- 604 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM--------------------------- 604 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH---------------------------
Confidence 9999999999999999986 68999999999999999999999999999997
Q ss_pred HHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcc---cHHHHHHHHHHcCC
Q psy767 317 EVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNG---DYLDIIHALAVSGH 393 (902)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~---~~~~li~~~~~~g~ 393 (902)
|.+.|+.|+..+|+++|.+|++.|++++|.++|++|...+..| +|+++|.+|++.|+
T Consensus 605 --------------------M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 605 --------------------IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred --------------------HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 7778899999999999999999999999999999987665444 49999999999999
Q ss_pred hHHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcccc
Q psy767 394 GEYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSA 470 (902)
Q Consensus 394 ~~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~ 470 (902)
.++|.++|++|.+ .|+.||..+ ++.+|++.|++++|.++|++|.+. ++.|+.
T Consensus 665 ~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~Pdv----------------------- 719 (1060)
T PLN03218 665 LDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTV----------------------- 719 (1060)
T ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCH-----------------------
Confidence 9999999999998 899999875 688999999999999999999864 455443
Q ss_pred chHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q psy767 471 DAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLI 549 (902)
Q Consensus 471 ~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll 549 (902)
.+|+ +|.+|++.|++++|.++|++|...+..| +..+|+++|.+|++.|+ +++|.+++++|.+.|+.||..+|++|+
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k~G~-le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCP--NTITYSILLVASERKDD-ADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3455 7888999999999999999999888766 66899999999999999 999999999999999999999999999
Q ss_pred HHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhhhHHHHHHHHHH
Q psy767 550 KAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFLDAEVLRILQV 629 (902)
Q Consensus 550 ~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~~~~~al~ll~~ 629 (902)
.. | . +.++. +.. +.+.+. .|.. .++... ....+.|+.+|++
T Consensus 797 gl--c---~-~~y~k---------a~~----l~~~v~----------~f~~---g~~~~~-------n~w~~~Al~lf~e 837 (1060)
T PLN03218 797 GL--C---L-RRFEK---------ACA----LGEPVV----------SFDS---GRPQIE-------NKWTSWALMVYRE 837 (1060)
T ss_pred HH--H---H-HHHHH---------Hhh----hhhhhh----------hhhc---cccccc-------cchHHHHHHHHHH
Confidence 54 3 1 11222 111 111111 1100 010011 1225679999999
Q ss_pred HHHHhCCCCChHHHHHhhhccCCCCCCChHHHHHHHHhc---CCCCccchHHHHHHHHHhcCHHHHHHHHHHhhhh--hc
Q psy767 630 AEAEFGVGSNTETLRDYVLPVLSPPNQVSGEVFSQLRSV---GVTIGSITSAYVVHMLRQHNLKEAALLAKSFRAH--YA 704 (902)
Q Consensus 630 m~~~~g~~P~~~t~~~lv~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~--~~ 704 (902)
| .+.|+.||..||..++ +|+.. ..........+++. +..|+..++..++..+.. ..++|..+++.|... ++
T Consensus 838 M-~~~Gi~Pd~~T~~~vL-~cl~~-~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-~~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 838 T-ISAGTLPTMEVLSQVL-GCLQL-PHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE-YDPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred H-HHCCCCCCHHHHHHHH-HHhcc-cccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc-ChHHHHHHHHHHHHcCCCC
Confidence 9 9999999999999988 55542 11233333444444 555556777777777522 247899999999864 22
Q ss_pred hhhccch--------hhhhhhccCCchhHHHHHHHHHhhhhcCCCcchhhh
Q psy767 705 KVVVRPV--------LAVSYLRTQDLPSLVTVVRAVCENWEKGEEGEKEEE 747 (902)
Q Consensus 705 ~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (902)
...++.. |..+.+ .--+...++.++.+|.. +++.|+
T Consensus 914 ~~~~~~~~~~~d~~~~~~~aa----~~~l~~wl~~~~~~~~~---g~~lp~ 957 (1060)
T PLN03218 914 SVSFKKSPIVIDAEELPVFAA----EVYLLTILKGLKHRLAA---GAKLPN 957 (1060)
T ss_pred CcccccCceEEEcccCcchhH----HHHHHHHHHHHHHHHhc---cCcCCc
Confidence 2211111 222111 11245567777888873 455665
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8e-58 Score=553.79 Aligned_cols=522 Identities=14% Similarity=0.159 Sum_probs=452.5
Q ss_pred hhcHHHHHHHhccccchh--HHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy767 22 SEATAEVTTVLGALGAFL--VLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHT 99 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~ 99 (902)
.|++.+|.++++...... ..+...++.++..|++.|.+++|..+|..|.. ||..+||.+|.+|++.|++
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---------pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---------PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---------CCHHHHHHHHHHHHhCcCH
Confidence 478899999988775443 35778888899999999999999999998876 9999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q psy767 100 FSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAE 179 (902)
Q Consensus 100 ~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~ 179 (902)
++|.++|++|.+.|+.||..+|+++ |.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsL------I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTL------ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHH------HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhccc--CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy767 180 GILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKP--QSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQ 257 (902)
Q Consensus 180 ~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~ 257 (902)
++|++|...|+.||..||+.||.+|++.|++++|.++|++|.. .+..|+..+|++++..+++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999976 57889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchH
Q psy767 258 AGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMM 337 (902)
Q Consensus 258 ~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 337 (902)
.|+.|+..+||++|.+|++.|++++|+++|++|...|+.|+..++..++..+.+.+..+.+..++. .|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~------------eM 675 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ------------DA 675 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH------------HH
Confidence 999999999999999999999999999999999999999998888888888888888888888875 58
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC---CCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCH
Q psy767 338 SQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGS---SLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADA 414 (902)
Q Consensus 338 ~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 414 (902)
.+.|+.||..+|++||.+|+++|++++|.++|++|.. .|+..+|++||.+|++.|++++|.++|++|.. .|+.||.
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-~Gi~Pd~ 754 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-LGLCPNT 754 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCH
Confidence 9999999999999999999999999999999999854 45555699999999999999999999999998 8999998
Q ss_pred HH---HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHH
Q psy767 415 AN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRI 491 (902)
Q Consensus 415 ~t---~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l 491 (902)
.| ++.+|++.|++++|.++|+.|.+. ++.|+. .+++.+..+++ +++++|.++
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~-----------------------~tynsLIglc~-~~y~ka~~l 809 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKED-GIKPNL-----------------------VMCRCITGLCL-RRFEKACAL 809 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCH-----------------------HHHHHHHHHHH-HHHHHHhhh
Confidence 87 578899999999999999999775 455443 35554444443 245555554
Q ss_pred HHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhh
Q psy767 492 VNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQ 571 (902)
Q Consensus 492 ~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~ 571 (902)
.+.+..-...+. ....+. .++|+.+|++|.+.|+.||..||+.++.++ | ..+....
T Consensus 810 ~~~v~~f~~g~~------------~~~n~w-~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl-~---~~~~~~~------- 865 (1060)
T PLN03218 810 GEPVVSFDSGRP------------QIENKW-TSWALMVYRETISAGTLPTMEVLSQVLGCL-Q---LPHDATL------- 865 (1060)
T ss_pred hhhhhhhhcccc------------ccccch-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-c---ccccHHH-------
Confidence 433332111010 011122 577999999999999999999999999554 5 6666666
Q ss_pred ccCcchHHHHHHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhhh--HHHHHHHHHHHHHHhCCCCChH
Q psy767 572 FRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFL--DAEVLRILQVAEAEFGVGSNTE 641 (902)
Q Consensus 572 ~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~~--~~~al~ll~~m~~~~g~~P~~~ 641 (902)
+.. +++.|...+ ..|...+|+.+|.+.. .++|+.++++| .+.|+.|+..
T Consensus 866 --~~~----m~~~m~~~~--------------~~~~~~~y~~Li~g~~~~~~~A~~l~~em-~~~Gi~p~~~ 916 (1060)
T PLN03218 866 --RNR----LIENLGISA--------------DSQKQSNLSTLVDGFGEYDPRAFSLLEEA-ASLGVVPSVS 916 (1060)
T ss_pred --HHH----HHHHhccCC--------------CCcchhhhHHHHHhhccChHHHHHHHHHH-HHcCCCCCcc
Confidence 434 666666665 3444888999997654 57899999999 9999999985
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-55 Score=528.02 Aligned_cols=466 Identities=15% Similarity=0.154 Sum_probs=435.3
Q ss_pred HHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q psy767 44 LLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQ 123 (902)
Q Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ 123 (902)
..++.++.++++.|++++|..+|+.|.. ..++.||..+|++++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~----~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEA----GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4678889999999999999999998876 345789999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 124 LISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCG 203 (902)
Q Consensus 124 ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a 203 (902)
+ |.+|+++|+++.|.++|++|.+ ||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 164 L------i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 164 V------LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred H------HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 9 9999999999999999999975 67799999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q psy767 204 YAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSV 283 (902)
Q Consensus 204 ~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A 283 (902)
|++.|..+.+.+++..+.+.+..++...++.++..|+++|++++|.++|++|. .+|.++||+||.+|++.|++++|
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999997 68999999999999999999999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q psy767 284 RRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMD 363 (902)
Q Consensus 284 ~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~ 363 (902)
+++|++|...|+.|+..|+..++..+.+.+..+.+.+++. .|.+.|+.||..+|++||++|+++|+++
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~------------~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA------------GLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH------------HHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999998886 5899999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHHhc
Q psy767 364 SIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 364 ~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
+|.++|++|.. ++..+||+||.+|++.|+.++|.++|++|.+ .|+.||..| ++.+|++.|.+++|.++|+.|.+.
T Consensus 378 ~A~~vf~~m~~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 378 DARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHHHhCCC-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99999999976 4778899999999999999999999999998 999999998 478889999999999999999998
Q ss_pred cCCCCCcccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHc
Q psy767 441 ANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKT 519 (902)
Q Consensus 441 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~ 519 (902)
+++.|+. .+|+ ++.+|++.|++++|.++|+.|+.. | +..+|++|+.+|+..
T Consensus 456 ~g~~p~~-----------------------~~y~~li~~l~r~G~~~eA~~~~~~~~~~---p--~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 456 HRIKPRA-----------------------MHYACMIELLGREGLLDEAYAMIRRAPFK---P--TVNMWAALLTACRIH 507 (697)
T ss_pred cCCCCCc-----------------------cchHhHHHHHHhcCCHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHHc
Confidence 8888875 3444 788899999999999999887532 2 456899999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhh
Q psy767 520 NQPIDKVLAVCHRLTDENLHPR-AFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAE 589 (902)
Q Consensus 520 g~~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g 589 (902)
|. .+.|..++++|. ++.|+ ..+|+.|++.+ + +.|++++ |.. +++.|.+.|
T Consensus 508 g~-~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y-~---~~G~~~~---------A~~----v~~~m~~~g 558 (697)
T PLN03081 508 KN-LELGRLAAEKLY--GMGPEKLNNYVVLLNLY-N---SSGRQAE---------AAK----VVETLKRKG 558 (697)
T ss_pred CC-cHHHHHHHHHHh--CCCCCCCcchHHHHHHH-H---hCCCHHH---------HHH----HHHHHHHcC
Confidence 99 999999999986 45675 77999999998 8 9999999 888 999999999
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.4e-51 Score=493.08 Aligned_cols=499 Identities=12% Similarity=0.136 Sum_probs=414.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCC
Q psy767 78 DVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQG-IEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFP 156 (902)
Q Consensus 78 g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 156 (902)
...++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.+ +.+|++.++++.|.+++..|...|+.
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~l------l~a~~~~~~~~~a~~l~~~m~~~g~~ 155 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDAL------VEACIALKSIRCVKAVYWHVESSGFE 155 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHH------HHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 344567799999999999999999999999998864 78999999999 99999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHH
Q psy767 157 ISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTN 236 (902)
Q Consensus 157 p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 236 (902)
||..+||.||++|++.|++++|.++|++|. .||.++|++++.+|++.|++++
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~------------------------ 207 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYRE------------------------ 207 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHH------------------------
Confidence 999999999999999999999999999996 4899999999999999998884
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHH
Q psy767 237 LLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYID 316 (902)
Q Consensus 237 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~ 316 (902)
|.++|++|.+.|+.||..+|+.+|.+|++.|..+.+.+++..
T Consensus 208 -----------A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~--------------------------- 249 (697)
T PLN03081 208 -----------AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC--------------------------- 249 (697)
T ss_pred -----------HHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH---------------------------
Confidence 555666677778889999999999999999999988888875
Q ss_pred HHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHH
Q psy767 317 EVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEY 396 (902)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~ 396 (902)
+.+.|+.||..+|++||++|+++|++++|.++|++|... +..+||+||.+|++.|++++
T Consensus 250 --------------------~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 250 --------------------VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred --------------------HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCCHHH
Confidence 677888899999999999999999999999999998764 66779999999999999999
Q ss_pred HHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchH
Q psy767 397 IDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAA 473 (902)
Q Consensus 397 A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 473 (902)
|+++|++|.+ .|+.||..| ++.+|++.|++++|.+++..|.+. ++.++. .++
T Consensus 309 A~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~-----------------------~~~ 363 (697)
T PLN03081 309 ALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDI-----------------------VAN 363 (697)
T ss_pred HHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCe-----------------------eeh
Confidence 9999999988 899999887 578889999999999999999876 333332 244
Q ss_pred H-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q psy767 474 N-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAH 552 (902)
Q Consensus 474 ~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~ 552 (902)
+ +|.+|+++|++++|.++|+.|... +..+||+||.+|+++|+ .++|+++|++|.+.|+.||..||+++++++
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~~------d~~t~n~lI~~y~~~G~-~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRK------NLISWNALIAGYGNHGR-GTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCC------CeeeHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4 889999999999999999999753 45789999999999999 999999999999999999999999999998
Q ss_pred cccccccCcchhhHhhhhhccCcchHHHHHHHHHH-hhHHHhhhhhhhcccccccchhhhHHHH----HhhhHHHHHHHH
Q psy767 553 VLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQ-AEDAACLQRITDLSTSIHGEVNSLYDLM----LSFLDAEVLRIL 627 (902)
Q Consensus 553 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~-~g~~~~~~~~~~~~~~i~p~~~~~~~li----~~~~~~~al~ll 627 (902)
+ +.|.+++ |.. +|+.|.+ .| +.|+..+|+.++ ++|.+++|.+++
T Consensus 437 -~---~~g~~~~---------a~~----~f~~m~~~~g--------------~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 437 -R---YSGLSEQ---------GWE----IFQSMSENHR--------------IKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred -h---cCCcHHH---------HHH----HHHHHHHhcC--------------CCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 7 9999999 988 9999986 46 666688898888 455599999998
Q ss_pred HHHHHHhCCCCChHHHHHhhhccCC-CCCCChHHHHHHHHhcCCCCcc-chHHHHHHH-HHhcCHHHHHHHHHHhhhhhc
Q psy767 628 QVAEAEFGVGSNTETLRDYVLPVLS-PPNQVSGEVFSQLRSVGVTIGS-ITSAYVVHM-LRQHNLKEAALLAKSFRAHYA 704 (902)
Q Consensus 628 ~~m~~~~g~~P~~~t~~~lv~~~~~-~~~~~~~~~~~~l~~~g~~~~~-~~~~~l~~~-~~~g~~~~a~~~~~~~~~~~~ 704 (902)
++| ++.||..+|..++.+|.. +..+....+.+.+. ++.|+. ..+.++... ++.|++++|.++++.|+...-
T Consensus 486 ~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 486 RRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 877 899999999999999987 44434444555554 555653 444555555 899999999999999986421
Q ss_pred ----hhhccc------hhhhhhhccCCchhHHHHHHHHHhhhhc
Q psy767 705 ----KVVVRP------VLAVSYLRTQDLPSLVTVVRAVCENWEK 738 (902)
Q Consensus 705 ----~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (902)
...|.. .|..+-....+.+..-+.++.+..++.+
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 111211 2333333444444444555555555543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=2.2e-22 Score=252.64 Aligned_cols=582 Identities=12% Similarity=0.037 Sum_probs=327.8
Q ss_pred cccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHH
Q psy767 52 KWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLI 131 (902)
Q Consensus 52 ~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li 131 (902)
.+...|++++|...|..... ..+.+...+..+...+.+.|++++|...+..+.... ..+...+..+ .
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l------~ 370 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILK------YAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLL------G 370 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH------H
Confidence 33444555555555554443 112234445555555555555555555555555432 2234444444 5
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
..+.+.|++++|.++|+.+.+.+ +.+...|..+...+...|++++|.+.|+.+.+.... +......++..+.+.|+++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHH
Confidence 55555566666666665554433 234445555555555556666666666555544211 2223344455555666666
Q ss_pred HHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 212 SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
+|..+++.+.... +.+...+..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 449 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 449 KALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666665554432 2233344555555555666666666666655432 3344455555666666666666666666654
Q ss_pred cCCCCC--CHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 292 SSLVNG--DYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLL 369 (902)
Q Consensus 292 ~~~~~p--~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~ 369 (902)
...... .+..+...+...++ .+.+..++. .+... .+.+...+..+...|.+.|++++|..++
T Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~------------~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 527 TIDPKNLRAILALAGLYLRTGN---EEEAVAWLE------------KAAEL-NPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred HhCcCcHHHHHHHHHHHHHcCC---HHHHHHHHH------------HHHHh-CccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 432111 11222222222222 222222211 11111 1234556667777777777777777777
Q ss_pred HHcCC-CCCc-ccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q psy767 370 AQNGS-SLVN-GDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGE 446 (902)
Q Consensus 370 ~~m~~-~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~ 446 (902)
+++.. .+.. ..|..+...|...|++++|.+.|+++.+...-.|..+. +...+...|++++|..+++++.+.. |.
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~ 667 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK---PD 667 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC
Confidence 77532 2222 23677777777777777787777777662222222222 3444557777888877777776531 22
Q ss_pred cccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHH
Q psy767 447 QLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKV 526 (902)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A 526 (902)
.. .....+...+...|++++|.++++.+..... .+...+..+...+...|+ +++|
T Consensus 668 ~~---------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~-~~~A 722 (899)
T TIGR02917 668 NT---------------------EAQIGLAQLLLAAKRTESAKKIAKSLQKQHP---KAALGFELEGDLYLRQKD-YPAA 722 (899)
T ss_pred CH---------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---CChHHHHHHHHHHHHCCC-HHHH
Confidence 11 0123455667888888888888888877642 244567778888888888 8888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhccccccc
Q psy767 527 LAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHG 606 (902)
Q Consensus 527 ~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p 606 (902)
+..++++...+ |+..++..+..++ . ..|+.++ |.. .++.+.+.. +-+
T Consensus 723 ~~~~~~~~~~~--~~~~~~~~l~~~~-~---~~g~~~~---------A~~----~~~~~l~~~-------------~~~- 769 (899)
T TIGR02917 723 IQAYRKALKRA--PSSQNAIKLHRAL-L---ASGNTAE---------AVK----TLEAWLKTH-------------PND- 769 (899)
T ss_pred HHHHHHHHhhC--CCchHHHHHHHHH-H---HCCCHHH---------HHH----HHHHHHHhC-------------CCC-
Confidence 88888887753 5556666666665 5 7788888 666 666666543 112
Q ss_pred chhhhHHHH----HhhhHHHHHHHHHHHHHHhCCCCChHHHHHhhhccCCCCCCChHHHHHHHHhc-CCCCcc--chHHH
Q psy767 607 EVNSLYDLM----LSFLDAEVLRILQVAEAEFGVGSNTETLRDYVLPVLSPPNQVSGEVFSQLRSV-GVTIGS--ITSAY 679 (902)
Q Consensus 607 ~~~~~~~li----~~~~~~~al~ll~~m~~~~g~~P~~~t~~~lv~~~~~~~~~~~~~~~~~l~~~-g~~~~~--~~~~~ 679 (902)
...+..+. ..+..++|++.++++ .+.. .++...+..+.......... +++..+++. ...|+. ....+
T Consensus 770 -~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~-p~~~~~~~~l~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~ 843 (899)
T TIGR02917 770 -AVLRTALAELYLAQKDYDKAIKHYRTV-VKKA-PDNAVVLNNLAWLYLELKDP---RALEYAEKALKLAPNIPAILDTL 843 (899)
T ss_pred -HHHHHHHHHHHHHCcCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHhcCcH---HHHHHHHHHHhhCCCCcHHHHHH
Confidence 22222221 244499999999999 4443 23456666665555543221 233333331 223333 33344
Q ss_pred HHHHHHhcCHHHHHHHHHHhhhh-hchhhccchhhhhhhccCCchhHHHHHHHHH
Q psy767 680 VVHMLRQHNLKEAALLAKSFRAH-YAKVVVRPVLAVSYLRTQDLPSLVTVVRAVC 733 (902)
Q Consensus 680 l~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 733 (902)
.....+.|++++|.+.+++.... .....+...++..+.+.|++++.+++++.+.
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44457899999999999988763 3344455557778999999999999888764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.7e-21 Score=244.68 Aligned_cols=477 Identities=14% Similarity=0.039 Sum_probs=254.2
Q ss_pred hHHhhcHHHHHHHhcccc-chhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCC
Q psy767 19 TEVSEATAEVTTVLGALG-AFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNE 97 (902)
Q Consensus 19 ~~~s~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g 97 (902)
....|.+++|...+.... .........+..+...+...|++++|...|+.+... .+.+...|..+...+...|
T Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~~ 173 (899)
T TIGR02917 100 YLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI------DPRSLYAKLGLAQLALAEN 173 (899)
T ss_pred HHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHCC
Confidence 444577777777775443 334445556666777777788888888888777651 1234556777777777788
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHH
Q psy767 98 HTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMAS 177 (902)
Q Consensus 98 ~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~ 177 (902)
++++|..+++++.+.. +++...+..+ ...+...|++++|...|+.....+ +.+..++..++..+...|++++
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~ 245 (899)
T TIGR02917 174 RFDEARALIDEVLTAD-PGNVDALLLK------GDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEE 245 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHH------HHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 8888888887776543 3355566666 667777777777777777776654 4566677777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc------------------------------
Q psy767 178 AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF------------------------------ 227 (902)
Q Consensus 178 A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~------------------------------ 227 (902)
|...++.+.+.... +...+......+...|++++|...|+.+.......
T Consensus 246 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 324 (899)
T TIGR02917 246 AEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY 324 (899)
T ss_pred HHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777665321 22222223333445566666666665554433221
Q ss_pred ---chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC--HHHH
Q psy767 228 ---LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD--YLDI 302 (902)
Q Consensus 228 ---~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~--~~tl 302 (902)
.......+...+...|++++|...+..+.... +.+...|+.+...|.+.|++++|.++|+++........ +..+
T Consensus 325 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 403 (899)
T TIGR02917 325 APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL 403 (899)
T ss_pred CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 11222223333334444444444444444332 23344444555555555555555555554433211100 1111
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC-CCc-c
Q psy767 303 IHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQNGSS-LVN-G 379 (902)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~-~~~-~ 379 (902)
...+...++.. .+...+. .... ..| +...+..++..|.+.|++++|..+++++... |.. .
T Consensus 404 ~~~~~~~~~~~---~A~~~~~------------~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 466 (899)
T TIGR02917 404 GISKLSQGDPS---EAIADLE------------TAAQ--LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS 466 (899)
T ss_pred HHHHHhCCChH---HHHHHHH------------HHHh--hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcH
Confidence 11111122111 1111100 0111 112 2234445556666666666666666664221 222 2
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHH
Q psy767 380 DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLV 455 (902)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~ 455 (902)
.|..+...+...|++++|.+.|+++.+ ..|+... +...+...|++++|..+++.+..... ...
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~------- 533 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALS---IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP---KNL------- 533 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---CcH-------
Confidence 356666666677777777777766655 3444332 23344566677777777766655321 110
Q ss_pred HhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 456 RHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 456 ~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
.....+...+.+.|+.++|..+|+.+.... +.+...+..+...+...|+ +++|+.+++++..
T Consensus 534 --------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~ 595 (899)
T TIGR02917 534 --------------RAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQ-LKKALAILNEAAD 595 (899)
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchhHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 012224444556666666666666655442 1123445556666666666 6666666666654
Q ss_pred CCCCCChhhHHHHHHHhcccccccCcchh
Q psy767 536 ENLHPRAFNLAVLIKAHVLKEDYTGAVET 564 (902)
Q Consensus 536 ~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~ 564 (902)
.. ..+..+|..+..++ + ..|+.++
T Consensus 596 ~~-~~~~~~~~~l~~~~-~---~~~~~~~ 619 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQ-L---AAGDLNK 619 (899)
T ss_pred cC-CCCHHHHHHHHHHH-H---HcCCHHH
Confidence 32 23445555555554 4 5555555
No 9
>KOG4318|consensus
Probab=99.92 E-value=1.4e-23 Score=233.36 Aligned_cols=415 Identities=27% Similarity=0.328 Sum_probs=326.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q psy767 103 TDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGIL 182 (902)
Q Consensus 103 ~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~ 182 (902)
..++..|...|+.|+.+||.++ |.-||..|+++.|- +|..|.-+..+.+...|+.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsL------iarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSL------IARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHH------HHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---
Confidence 3567788889999999999999 99999999999999 9999999988889999999999999999988876
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q psy767 183 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEP 262 (902)
Q Consensus 183 ~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~p 262 (902)
.|...||..|+.+|...||+.. |+.
T Consensus 80 --------ep~aDtyt~Ll~ayr~hGDli~----fe~------------------------------------------- 104 (1088)
T KOG4318|consen 80 --------EPLADTYTNLLKAYRIHGDLIL----FEV------------------------------------------- 104 (1088)
T ss_pred --------CCchhHHHHHHHHHHhccchHH----HHH-------------------------------------------
Confidence 7888999999999999998862 111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCC
Q psy767 263 SAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGL 342 (902)
Q Consensus 263 d~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~ 342 (902)
+.+
T Consensus 105 --------------------veq--------------------------------------------------------- 107 (1088)
T KOG4318|consen 105 --------------------VEQ--------------------------------------------------------- 107 (1088)
T ss_pred --------------------HHH---------------------------------------------------------
Confidence 000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHH
Q psy767 343 EPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLI 422 (902)
Q Consensus 343 ~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~ 422 (902)
+...++..+...|.......++..+.-..++.||..
T Consensus 108 -------------------------------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~------- 143 (1088)
T KOG4318|consen 108 -------------------------------------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE------- 143 (1088)
T ss_pred -------------------------------------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH-------
Confidence 111233344444444444445544433355666444
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCC
Q psy767 423 NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANIN 502 (902)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~ 502 (902)
+.+..+.-.|.++.+.+++..+|......
T Consensus 144 ---------------------------------------------------n~illlv~eglwaqllkll~~~Pvsa~~~ 172 (1088)
T KOG4318|consen 144 ---------------------------------------------------NAILLLVLEGLWAQLLKLLAKVPVSAWNA 172 (1088)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHHhhCCcccccc
Confidence 44444555566666666666666554333
Q ss_pred CCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHH
Q psy767 503 GEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELL 582 (902)
Q Consensus 503 ~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll 582 (902)
+ +-.+++.+.....|+++-..+++...+ .|++.+|..++.+. . .+|+++. |.+ ++
T Consensus 173 p-----~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a-l---aag~~d~---------Ak~----ll 227 (1088)
T KOG4318|consen 173 P-----FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA-L---AAGDVDG---------AKN----LL 227 (1088)
T ss_pred h-----HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH-H---hcCchhh---------HHH----HH
Confidence 1 122588888888888888888888877 69999999999887 6 8999999 988 99
Q ss_pred HHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhhh-HHHHHHHHHHHHHHhCCCCChHHHHHhhhccCCCCCCChHHH
Q psy767 583 KRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFL-DAEVLRILQVAEAEFGVGSNTETLRDYVLPVLSPPNQVSGEV 661 (902)
Q Consensus 583 ~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~~-~~~al~ll~~m~~~~g~~P~~~t~~~lv~~~~~~~~~~~~~~ 661 (902)
.+|++.| ++++ +|+||+++.+-. ...+..+++.| ++.|+.|+.+|+..++.+|+. + |+
T Consensus 228 ~emke~g------------fpir--~HyFwpLl~g~~~~q~~e~vlrgm-qe~gv~p~seT~adyvip~l~--N--~~-- 286 (1088)
T KOG4318|consen 228 YEMKEKG------------FPIR--AHYFWPLLLGINAAQVFEFVLRGM-QEKGVQPGSETQADYVIPQLS--N--GQ-- 286 (1088)
T ss_pred HHHHHcC------------CCcc--cccchhhhhcCccchHHHHHHHHH-HHhcCCCCcchhHHHHHhhhc--c--hh--
Confidence 9999999 9999 999999998654 77788888888 999999999999999999998 2 33
Q ss_pred HHHHHhcCCCCccchHHHHHHHHHhcCHHHHHHHHHHhhhhhchhhccchhhhhhhccCCchhHHHHHHHHHhhhhcCCC
Q psy767 662 FSQLRSVGVTIGSITSAYVVHMLRQHNLKEAALLAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLVTVVRAVCENWEKGEE 741 (902)
Q Consensus 662 ~~~l~~~g~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (902)
-...+.|...+....+-+++++-.| ..|.+++++....+....++++|..++...+ ..|+...+.+++ ++
T Consensus 287 -t~~~~e~sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~--aiws~c~~l~hQ-----gk 356 (1088)
T KOG4318|consen 287 -TKYGEEGSQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILE--AIWSMCEKLRHQ-----GK 356 (1088)
T ss_pred -hhhcccccchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccch--HHHHHHHHHHHc-----CC
Confidence 4556677777777777777776566 7888899988888899999999999988888 777777777761 11
Q ss_pred cchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhhcC--cchhhHHHHHHHHHHhccccccccchHHHHhhhhhhhhHHH
Q psy767 742 GEKEEEGEEKTAGQLIDMDRIFAGNVLLDIYKATRQD--PNVVSHLEQLLNAFVEHAIPISAFSSDYIQNGLGSALTSDI 819 (902)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (902)
+-+.+.++.+++....++... ++...+++|++++.+.+...+-..+.++|++.++++.|+.+
T Consensus 357 ----------------~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~v 420 (1088)
T KOG4318|consen 357 ----------------GEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRV 420 (1088)
T ss_pred ----------------CchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHH
Confidence 224567777777777776666 77888999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy767 820 SKALGAL 826 (902)
Q Consensus 820 ~~~l~~~ 826 (902)
+++|.++
T Consensus 421 sell~~l 427 (1088)
T KOG4318|consen 421 SELLENL 427 (1088)
T ss_pred HHHHHHh
Confidence 9998776
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.79 E-value=8.8e-15 Score=186.21 Aligned_cols=611 Identities=12% Similarity=0.023 Sum_probs=359.5
Q ss_pred hhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHH---------------
Q psy767 22 SEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHY--------------- 86 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~y--------------- 86 (902)
.++++.|.+.+..+....+.+.-+...+...+...|+.++|...++.... +.|+...+
T Consensus 41 ~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~-------~~P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQ-------LAPDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred hCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-------hCCCChHHHHHHHHHHhcCCchh
Confidence 46777777777766655666666667777777888888888888888876 33333221
Q ss_pred --HHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 87 --NALLRVYLDNEHTFSPTDFLAKLESQGIEPNRV-TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 87 --n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
-.....+...|++++|...|+.+.... +|+.. ..... .......|+.++|.+.|+.+.+.. |-+...+.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~------~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYW------RLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHH------HHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 223345777888888888888887543 33321 11111 112224588888888888887764 55667778
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHH-----------------HHHHHHHHHHcCChhHHHHHHHhcccCC
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAGLEPS--AQT-----------------YTKLMCGYAKHGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~t-----------------y~~ll~a~~~~g~~~~a~~l~~~~~~~~ 224 (902)
.+...+...|+.++|+..|+++........ ... +...+..+-.......+...+.......
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 888888888888888888888765421000 001 1111111111112233444443332221
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHH
Q psy767 225 ELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIH 304 (902)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~ 304 (902)
..+... .......+...|++++|...|++..+.. +.+..++..|...|.+.|++++|+..|++...........
T Consensus 266 ~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~---- 339 (1157)
T PRK11447 266 ADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR---- 339 (1157)
T ss_pred cCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch----
Confidence 112111 1122344556899999999999988764 4477888999999999999999999998854432111000
Q ss_pred HHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCccc-HH
Q psy767 305 ALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGD-YL 382 (902)
Q Consensus 305 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~-~~ 382 (902)
.....+.. .........+...+.+.|++++|...|++. ...|..+. +.
T Consensus 340 -----------~~~~~ll~-------------------~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~ 389 (1157)
T PRK11447 340 -----------DKWESLLK-------------------VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVL 389 (1157)
T ss_pred -----------hHHHHHHH-------------------hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 00000000 000001122345678999999999999983 44444333 66
Q ss_pred HHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHH---HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhh
Q psy767 383 DIIHALAVSGHGEYIDEIISKIQPGVGYSADAANH---IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMV 459 (902)
Q Consensus 383 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~---i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~ 459 (902)
.+...+...|++++|++.|++..+ ..|+.... +..+...++.++|..+++.+......... .....
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~---~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~------~~~~~-- 458 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALR---MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID------DIERS-- 458 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH------HHHHH--
Confidence 788999999999999999999988 56765432 22233567889999888765432100000 00000
Q ss_pred hcCCCCCccccc-hHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q psy767 460 KTNQPGVGYSAD-AANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENL 538 (902)
Q Consensus 460 ~~~~~~~g~~~~-~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~ 538 (902)
.... .......+...|++++|.+.|++..... |.++..+..+...|.+.|+ .++|+..++++.+.
T Consensus 459 --------l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G~-~~~A~~~l~~al~~-- 524 (1157)
T PRK11447 459 --------LQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAGQ-RSQADALMRRLAQQ-- 524 (1157)
T ss_pred --------hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc--
Confidence 0001 1224445788999999999999998763 3345567788889999999 99999999998764
Q ss_pred CCChh-hHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccc--cchhhhHHHH
Q psy767 539 HPRAF-NLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIH--GEVNSLYDLM 615 (902)
Q Consensus 539 ~Pd~~-t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~--p~~~~~~~li 615 (902)
.|+.. .+..+.-.+ . ..|+.++ |.. .++.+.... ..+.+..+...+. ........+.
T Consensus 525 ~P~~~~~~~a~al~l-~---~~~~~~~---------Al~----~l~~l~~~~---~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 525 KPNDPEQVYAYGLYL-S---GSDRDRA---------ALA----HLNTLPRAQ---WNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred CCCCHHHHHHHHHHH-H---hCCCHHH---------HHH----HHHhCCchh---cChhHHHHHHHHhhhHHHHHHHHHH
Confidence 34322 222111111 2 5677777 555 444432211 0000000000000 0001122333
Q ss_pred HhhhHHHHHHHHHHHHHHhCCCCChHHHHHhhhccCCCCCCChHHHHHHHHh-cCCCCcc--chHHHHHHHHHhcCHHHH
Q psy767 616 LSFLDAEVLRILQVAEAEFGVGSNTETLRDYVLPVLSPPNQVSGEVFSQLRS-VGVTIGS--ITSAYVVHMLRQHNLKEA 692 (902)
Q Consensus 616 ~~~~~~~al~ll~~m~~~~g~~P~~~t~~~lv~~~~~~~~~~~~~~~~~l~~-~g~~~~~--~~~~~l~~~~~~g~~~~a 692 (902)
..+..++|+++++.- .++...+..+........+ .+++++.+++ ....|+. ....+...+...|++++|
T Consensus 585 ~~G~~~eA~~~l~~~------p~~~~~~~~La~~~~~~g~--~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 585 DSGKEAEAEALLRQQ------PPSTRIDLTLADWAQQRGD--YAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HCCCHHHHHHHHHhC------CCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 455588888887722 2333333333333333222 3344444443 2233443 555666666899999999
Q ss_pred HHHHHHhhhh-hchhhccchhhhhhhccCCchhHHHHHHHHHhhh
Q psy767 693 ALLAKSFRAH-YAKVVVRPVLAVSYLRTQDLPSLVTVVRAVCENW 736 (902)
Q Consensus 693 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
++.++..... .+.......++.++...++++..++.++.+....
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999976653 3344444556777889999999999999887443
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=6.7e-16 Score=174.55 Aligned_cols=290 Identities=14% Similarity=0.088 Sum_probs=196.2
Q ss_pred HHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHH
Q psy767 92 VYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS---EGVFNALIYG 168 (902)
Q Consensus 92 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~yn~Li~~ 168 (902)
.+...|++++|...|.++.+.+ +.+..++..+ ...+...|++++|..+++.+...+..++ ...|..+...
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLAL------GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHH------HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 4456677788888888877653 1244566667 7777788888888888877766432221 2456777777
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccch----hhHHHHHHHHHhcCC
Q psy767 169 HSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLC----FSFQLTNLLILVSSD 244 (902)
Q Consensus 169 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~ 244 (902)
|.+.|++++|+.+|+++.+.. .++..++..++..+.+.|++++|.+.++.+...+..... ..+..+...+...|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 888888888888888877652 335667777778888888888888888777665433221 123344455566788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy767 245 MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCF 324 (902)
Q Consensus 245 ~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~ 324 (902)
+++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++..
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------------------------- 242 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE-------------------------------- 242 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------------
Confidence 888888888877653 33456777777888888888888888887422
Q ss_pred hhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcccHHHHHHHHHHcCChHHHHHHHHH
Q psy767 325 VNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGDYLDIIHALAVSGHGEYIDEIISK 403 (902)
Q Consensus 325 ~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 403 (902)
.+......+++.++.+|.+.|++++|...++++ ...|....+..++..+.+.|++++|.+++++
T Consensus 243 ---------------~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 243 ---------------QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred ---------------HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 111112355677788888888888888888774 2334444467777888888888888888888
Q ss_pred cccCCCCCCCHHHH---HHHHHH---cCCHHHHHHHHHHHHhc
Q psy767 404 IQPGVGYSADAANH---IYHLIN---KGQIDAAYRIVNTLARS 440 (902)
Q Consensus 404 m~~~~g~~pd~~t~---i~~l~~---~g~~~~A~~~~~~m~~~ 440 (902)
+.+ ..|+..++ +..+.. .|+.+++..+++.|.+.
T Consensus 308 ~l~---~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 308 QLR---RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHH---hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 776 46776543 333332 45788888888877764
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.70 E-value=2.2e-14 Score=162.11 Aligned_cols=311 Identities=15% Similarity=0.104 Sum_probs=250.8
Q ss_pred HHHHHHHHH-HHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC-
Q psy767 40 VLLVLLFVY-LNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN- 117 (902)
Q Consensus 40 ~~~~~~~~~-l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd- 117 (902)
..+.+...+ ....+...|++++|...|..+... -+.+..+|..+...|...|++++|..+++.+...+..++
T Consensus 31 ~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 104 (389)
T PRK11788 31 ESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE 104 (389)
T ss_pred hhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH
Confidence 344444444 577788999999999999999981 233556899999999999999999999999987543322
Q ss_pred --HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-
Q psy767 118 --RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA- 194 (902)
Q Consensus 118 --~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~- 194 (902)
...+..+ ...|.+.|+++.|..+|+.+.+.. +++..+++.++..|.+.|++++|.+.|+.+.+.+..+..
T Consensus 105 ~~~~~~~~L------a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (389)
T PRK11788 105 QRLLALQEL------GQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV 177 (389)
T ss_pred HHHHHHHHH------HHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH
Confidence 2446666 999999999999999999998764 567889999999999999999999999999987543322
Q ss_pred ---HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 195 ---QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLM 271 (902)
Q Consensus 195 ---~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI 271 (902)
..|..+...+.+.|++++|.+.|+++.+.... ....+..+..++...|++++|.++++++...+......+++.++
T Consensus 178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 256 (389)
T PRK11788 178 EIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLM 256 (389)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHH
Confidence 24556777889999999999999999875432 34566677788889999999999999999764333356789999
Q ss_pred HHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHH
Q psy767 272 CGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTK 351 (902)
Q Consensus 272 ~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~ 351 (902)
.+|...|++++|...++++ .+. .|+...+..
T Consensus 257 ~~~~~~g~~~~A~~~l~~~-----------------------------------------------~~~--~p~~~~~~~ 287 (389)
T PRK11788 257 ECYQALGDEAEGLEFLRRA-----------------------------------------------LEE--YPGADLLLA 287 (389)
T ss_pred HHHHHcCCHHHHHHHHHHH-----------------------------------------------HHh--CCCchHHHH
Confidence 9999999999999999873 222 467677789
Q ss_pred HHHHHHHcCCHHHHHHHHHH-cCCCCCcccHHHHHHHHHH---cCChHHHHHHHHHcccCCCCCCCH
Q psy767 352 LMCGYAKHGDMDSIRRLLAQ-NGSSLVNGDYLDIIHALAV---SGHGEYIDEIISKIQPGVGYSADA 414 (902)
Q Consensus 352 Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~~g~~pd~ 414 (902)
+...|.+.|++++|..+|++ +...|....++.++..+.. .|+.+++..++++|.+ .++.|+.
T Consensus 288 la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~-~~~~~~p 353 (389)
T PRK11788 288 LAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG-EQLKRKP 353 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH-HHHhCCC
Confidence 99999999999999999987 5556777778888877775 5588999999999998 6666654
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.69 E-value=5e-14 Score=179.34 Aligned_cols=456 Identities=14% Similarity=0.052 Sum_probs=309.3
Q ss_pred HhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHh-
Q psy767 50 NSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISN- 127 (902)
Q Consensus 50 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~- 127 (902)
...+...|++++|...|+.... --+.+...+..+...|.+.|++++|...|++..+..... +...|..++..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVR------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 4455678999999999999887 123377889999999999999999999999998864322 22222222210
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 128 -----SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMC 202 (902)
Q Consensus 128 -----~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~ 202 (902)
..+...+.+.|++++|...|++..... +.+...+..+...+...|++++|++.|++..+.. ..+...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 112456788999999999999998875 5567788889999999999999999999998863 224556667777
Q ss_pred HHHHcCChhHHHHHHHhcccCCCc--------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q psy767 203 GYAKHGDMDSIKTKIPSLKPQSEL--------FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGY 274 (902)
Q Consensus 203 a~~~~g~~~~a~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~ 274 (902)
.|. .++.++|..+++.+...... .....+......+...|++++|...|++..+.. +-+...+..+...|
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 664 46789999888876543211 112344556667778999999999999998764 33566788899999
Q ss_pred HHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHH
Q psy767 275 AKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMC 354 (902)
Q Consensus 275 ~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~ 354 (902)
.+.|++++|...|++............+..++... ..+..+++...+.-+.. ..|. ..+...........+..+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~-~~~~~~~Al~~l~~l~~-~~~~--~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLS-GSDRDRAALAHLNTLPR-AQWN--SNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHhCCc-hhcC--hhHHHHHHHHhhhHHHHHHH
Confidence 99999999999999976533222222222222221 12233333222211000 0000 00000000111122345677
Q ss_pred HHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHH
Q psy767 355 GYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAA 430 (902)
Q Consensus 355 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A 430 (902)
.+...|+.++|..+++.-. .....+..+...+...|++++|++.|++..+ ..|+... +...+...|+.++|
T Consensus 582 ~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 8899999999999998422 1223367788999999999999999999988 5676543 45667799999999
Q ss_pred HHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC---ccc
Q psy767 431 YRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGE---QLP 507 (902)
Q Consensus 431 ~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~---~~~ 507 (902)
...++...+. .|..+. ....+...+...|++++|.++++.+.......+. ...
T Consensus 657 ~~~l~~ll~~---~p~~~~---------------------~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~ 712 (1157)
T PRK11447 657 RAQLAKLPAT---ANDSLN---------------------TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL 712 (1157)
T ss_pred HHHHHHHhcc---CCCChH---------------------HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH
Confidence 9999977653 222111 1233455578999999999999998875422211 123
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHH-HHHCCCCCC----hhhHHHHH
Q psy767 508 VGGFLVRHMVKTNQPIDKVLAVCHR-LTDENLHPR----AFNLAVLI 549 (902)
Q Consensus 508 ~~n~li~~~~~~g~~~~~A~~l~~~-m~~~g~~Pd----~~t~~~ll 549 (902)
.+..+...+...|+ +++|+..|++ |...|+.|+ ..+++.++
T Consensus 713 ~~~~~a~~~~~~G~-~~~A~~~y~~Al~~~~~~~~~p~~~~~~~~l~ 758 (1157)
T PRK11447 713 VLRDAARFEAQTGQ-PQQALETYKDAMVASGITPTRPQDNDTFTRLT 758 (1157)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhhcCCCCCCCCCchHHHHHh
Confidence 45556777888999 9999999999 556666543 23455544
No 14
>KOG4318|consensus
Probab=99.67 E-value=1e-13 Score=155.64 Aligned_cols=647 Identities=12% Similarity=0.037 Sum_probs=348.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC
Q psy767 74 TGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK 153 (902)
Q Consensus 74 ~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~ 153 (902)
++..|+.|+-+||..+|.-|+..|+.+.|- +|.-|.-.....+...|+.+ +.+..+.++.+.+.
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~l------v~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGL------VASHKEANDAENPK--------- 79 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHH------HhcccccccccCCC---------
Confidence 345788999999999999999999998888 88888887777788888888 88888888877776
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHH----HCCC-----------------CCCHHHHHHHHHHHHHcCC
Q psy767 154 TFPISEGVFNALIYGHSQANDMAS---AEGILTMMS----QAGL-----------------EPSAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 154 ~~~p~~~~yn~Li~~~~~~g~~~~---A~~l~~~M~----~~g~-----------------~pd~~ty~~ll~a~~~~g~ 209 (902)
.|...+|+.|..+|.+.||+.. +.+.+.... ..|+ -||. ..++.-....|.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~egl 154 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGL 154 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHH
Confidence 6777899999999999998654 333222221 1222 1222 223444556677
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILV-SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLA 288 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~ 288 (902)
|+.+.+++..+........... ++.. .-...-.+++.+......-.|+..+|.+++..-.-+|+.+.|..++.
T Consensus 155 waqllkll~~~Pvsa~~~p~~v------fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQV------FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHH------HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence 7888888776654322221111 1222 22223333444433332116999999999999999999999999999
Q ss_pred HhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy767 289 QSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRL 368 (902)
Q Consensus 289 ~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~ 368 (902)
+|.+.|......-+-.+++..+...-.+.+. +.|...|+.|+..|+...+..+...|....+...
T Consensus 229 emke~gfpir~HyFwpLl~g~~~~q~~e~vl---------------rgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~ 293 (1088)
T KOG4318|consen 229 EMKEKGFPIRAHYFWPLLLGINAAQVFEFVL---------------RGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG 293 (1088)
T ss_pred HHHHcCCCcccccchhhhhcCccchHHHHHH---------------HHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc
Confidence 9999998877665555555544333333332 3589999999999999988888875552222111
Q ss_pred HHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcc
Q psy767 369 LAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQL 448 (902)
Q Consensus 369 ~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~ 448 (902)
. +....+++-+.+-+..| ..|.+.++.-....-+......|+.+. +
T Consensus 294 s------q~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~----------------------d---- 339 (1088)
T KOG4318|consen 294 S------QLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGT----------------------D---- 339 (1088)
T ss_pred c------chhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhcc----------------------c----
Confidence 1 01111222222222222 233333322211000000000011110 0
Q ss_pred cchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCC-CCCccchHHHHHHHHHHcCCCHHHHH
Q psy767 449 PVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANI-NGEQLPVGGFLVRHMVKTNQPIDKVL 527 (902)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~-~~~~~~~~n~li~~~~~~g~~~~~A~ 527 (902)
+....+.++.-+..+|+-++..++...+...... .+..+..|..++..|
T Consensus 340 -------------------~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy----------- 389 (1088)
T KOG4318|consen 340 -------------------ILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY----------- 389 (1088)
T ss_pred -------------------cchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH-----------
Confidence 0001233333344467777777777776654321 112233343333333
Q ss_pred HHHHHHHHCCCCCChhhHH--HHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccc
Q psy767 528 AVCHRLTDENLHPRAFNLA--VLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIH 605 (902)
Q Consensus 528 ~l~~~m~~~g~~Pd~~t~~--~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~ 605 (902)
|.+....- +...|. ..++-. + ....+.. ..+ ++.....+-.+....++.. +...+
T Consensus 390 --Frr~e~~~---~~~i~~~~qgls~~-l---~se~tp~---------vse----ll~~lrkns~lr~lv~Lss-~Eler 446 (1088)
T KOG4318|consen 390 --FRRIERHI---CSRIYYAGQGLSLN-L---NSEDTPR---------VSE----LLENLRKNSFLRQLVGLSS-TELER 446 (1088)
T ss_pred --HHHHHhhH---HHHHHHHHHHHHhh-h---chhhhHH---------HHH----HHHHhCcchHHHHHhhhhH-HHHhc
Confidence 22222110 001111 000000 0 0011111 000 1222211111112222111 13345
Q ss_pred cchhhhHHHHHhhh----HHHHHHHHHHHHHHhCCCCChHHHHHhhhccCCCCCCChHHHHHHHHhcCCCCccchHHHHH
Q psy767 606 GEVNSLYDLMLSFL----DAEVLRILQVAEAEFGVGSNTETLRDYVLPVLSPPNQVSGEVFSQLRSVGVTIGSITSAYVV 681 (902)
Q Consensus 606 p~~~~~~~li~~~~----~~~al~ll~~m~~~~g~~P~~~t~~~lv~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~ 681 (902)
+|.+|+++...- -+.-+.+..+| ....+..+.++|.++..+-.....-..-+..+.+++++..++.+.+.-..
T Consensus 447 --~he~~~~~~h~irdi~~ql~l~l~se~-n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s 523 (1088)
T KOG4318|consen 447 --SHEPWPLIAHLIRDIANQLHLTLNSEY-NKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDES 523 (1088)
T ss_pred --ccccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchh
Confidence 667776664332 44456677777 77777778888887777633311111224566666666666654444444
Q ss_pred HHHHhcCHHHHHHHHHHhhhhhchhhccchhhhhhhccCCchhHHHHHHHHHhhhhcCCCcchhhhhhhhhhhhhh-hhh
Q psy767 682 HMLRQHNLKEAALLAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLVTVVRAVCENWEKGEEGEKEEEGEEKTAGQLI-DMD 760 (902)
Q Consensus 682 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 760 (902)
..+..++.-+..+++.++...++...+.+...- ..-+.....+.+++-+-.-.+ .+ .++. ..-
T Consensus 524 ~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks--~a~n~~~~a~~~f~~lns~a~---ag-----------qqe~Lkkl 587 (1088)
T KOG4318|consen 524 IHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS--SAENEPLVAIILFPLLNSGAP---AG-----------QQEKLKKL 587 (1088)
T ss_pred hhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH--HhhCCchHHHHHHHHHhhhhh---cc-----------CHHHHHHH
Confidence 444444444444444444443333333222211 111122222333333322111 00 0000 223
Q ss_pred hhHHHHHHHHH-HH----HhhcCcchhhHHHHHHHHHHhccccccccchHHHHhhhhh------hhhHHHHHHHhh-hhc
Q psy767 761 RIFAGNVLLDI-YK----ATRQDPNVVSHLEQLLNAFVEHAIPISAFSSDYIQNGLGS------ALTSDISKALGA-LTS 828 (902)
Q Consensus 761 ~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~-~~~ 828 (902)
.++++++.+.. .+ ..+.+ . ....+-+.+...+-+.+++-..+.+.....+ ..+.++++.+++ +..
T Consensus 588 ~d~lvslgl~etgPl~~vhLrkd--d-~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~ 664 (1088)
T KOG4318|consen 588 ADILVSLGLSETGPLWMVHLRKD--D-QSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKL 664 (1088)
T ss_pred HHHHHHhhhhhcccceEEEeecc--c-hhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhc
Confidence 45666666655 11 22222 2 2355666777788889999999988887743 356678888887 888
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCcchhhhHHHhhc--CCCcc
Q psy767 829 DDLMPQPLQYVPSMFIPRGQPLRCLDKDPLRRWSCDQLLR--HPYFN 873 (902)
Q Consensus 829 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 873 (902)
|.+..+.+.- ..++....|+++++.|..++++-|++++ ||-|.
T Consensus 665 g~~~~a~di~--etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~ 709 (1088)
T KOG4318|consen 665 GSCVDAGDIT--ETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGK 709 (1088)
T ss_pred ccccchhhcc--ccCcccccCCCccccccCccccHHHHHHHHhHhHH
Confidence 8888776542 2456677888999999999999998875 44443
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.65 E-value=1.2e-11 Score=151.11 Aligned_cols=597 Identities=10% Similarity=-0.024 Sum_probs=361.7
Q ss_pred HhcccCCCCCCcCcccccCccccccCCCCCCC-CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhH
Q psy767 50 NSKWCSEPSLGPGNLPCEDPFSVHTGELDVPL-DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNS 128 (902)
Q Consensus 50 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~p-d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~ 128 (902)
...+...|++++|...|+.... +.| +...+..+...|...|++++|+..+++..+. .|+...|..+
T Consensus 51 a~~~~~~Gd~~~A~~~l~~Al~-------~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~---- 117 (987)
T PRK09782 51 ALKAQKNNDEATAIREFEYIHQ-------QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERS---- 117 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH----
Confidence 4444556999999999999987 344 4567889999999999999999999999865 5655555444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q psy767 129 KLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYG--------HSQANDMASAEGILTMMSQAGLEPSAQTYTKL 200 (902)
Q Consensus 129 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~--------~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 200 (902)
+ +..++.++|..+++++.... |-+..++..+... |.+. ++|.+.++ .......|+..+....
T Consensus 118 --L---a~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~ 187 (987)
T PRK09782 118 --L---AAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTD 187 (987)
T ss_pred --H---HHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHH
Confidence 3 22299999999999998875 4456666666665 6666 55555555 4444344556655554
Q ss_pred -HHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q psy767 201 -MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV-SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG 278 (902)
Q Consensus 201 -l~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g 278 (902)
...|.+.++|++|.+++.++.+.+..... ....+..++.. .++ +.+..+++. .+.-|...+.++...|.+.|
T Consensus 188 ~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~-~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 188 LLQRAIYLKQWSQADTLYNEARQQNTLSAA-ERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCC
Confidence 89999999999999999999998765543 34444446665 466 777777553 33578999999999999999
Q ss_pred CHHHHHHHHHHhccCCCC-CCHHHHHHHHHHcCCcccHHH--------------HHHHHHHhhhhhcccccchHHhcCCC
Q psy767 279 DMDSVRRLLAQSGSSLVN-GDYLDIIHALAVSGHGEYIDE--------------VSAIVCFVNICFHWLEGPMMSQAGLE 343 (902)
Q Consensus 279 ~~~~A~~lf~~m~~~~~~-p~~~tl~~~l~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~m~~~g~~ 343 (902)
+.++|.++++++...... |...+.+-.+.+.+....... ...+......-..+....++ ..+.
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 339 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL--LATL 339 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH--hcCC
Confidence 999999999998776444 555566656665554421100 01111111111111111112 2344
Q ss_pred CCHHHHHHHHHHHH--HcCCHHHHHHHHHHcCCC-CCcc-cHHHHHHHHHHcCChHHHHHHHHHcccC-CCCCC-CHH--
Q psy767 344 PSAQTYTKLMCGYA--KHGDMDSIRRLLAQNGSS-LVNG-DYLDIIHALAVSGHGEYIDEIISKIQPG-VGYSA-DAA-- 415 (902)
Q Consensus 344 p~~~t~~~Li~~y~--~~g~~~~A~~~~~~m~~~-~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~-~g~~p-d~~-- 415 (902)
|.... ..+..+. ..+...++...++.|-.. +... ..-.+.....+.|+.++|..+|+..... ..-.+ ...
T Consensus 340 ~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 340 PANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 44332 1222222 224445555444443222 3222 2444555566888888888888887651 11111 111
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHhcc------CCCCCcccchhhHHHhhhhcCCCC-Cc--cccchHHHHHHHHhcC
Q psy767 416 NHIYHLINKGQ---IDAAYRIVNTLARSA------NINGEQLPVGGFLVRHMVKTNQPG-VG--YSADAANHIYHLINKG 483 (902)
Q Consensus 416 t~i~~l~~~g~---~~~A~~~~~~m~~~~------~i~~~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~li~~~~k~g 483 (902)
.++..|.+.+. ..++..+-..+.... ...+..+ . ...+..-.|. ++ .....+++..++.. |
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~ 490 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD-----N-CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-T 490 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh-----h-HHHHHHhcccCCCCCCHHHHHHHHHHHHh-C
Confidence 14445555555 333333311111000 0000000 0 0000011111 11 22223444444544 8
Q ss_pred ChHHHHHHHHHHHHccCCCCCccchHHHH--HHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCc
Q psy767 484 QIDAAYRIVNTLARSANINGEQLPVGGFL--VRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGA 561 (902)
Q Consensus 484 ~~~~A~~l~~~m~~~~~~~~~~~~~~n~l--i~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~ 561 (902)
+.++|...+......... .++.+ ...+...|+ .++|+..|+++... .|+...+..+..++ . ..|+
T Consensus 491 ~~~eAi~a~~~Al~~~Pd------~~~~L~lA~al~~~Gr-~eeAi~~~rka~~~--~p~~~a~~~la~al-l---~~Gd 557 (987)
T PRK09782 491 LPGVALYAWLQAEQRQPD------AWQHRAVAYQAYQVED-YATALAAWQKISLH--DMSNEDLLAAANTA-Q---AAGN 557 (987)
T ss_pred CcHHHHHHHHHHHHhCCc------hHHHHHHHHHHHHCCC-HHHHHHHHHHHhcc--CCCcHHHHHHHHHH-H---HCCC
Confidence 999999988777665321 23333 444468899 99999999997554 34444444444344 5 7888
Q ss_pred chhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccccchhhhHHHH--Hh---hhHHHHHHHHHHHHHHhCC
Q psy767 562 VETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLM--LS---FLDAEVLRILQVAEAEFGV 636 (902)
Q Consensus 562 ~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li--~~---~~~~~al~ll~~m~~~~g~ 636 (902)
.++ |.. +++...+.. |........+ .. +..++|+..+++. . .+
T Consensus 558 ~~e---------A~~----~l~qAL~l~----------------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A-L--~l 605 (987)
T PRK09782 558 GAA---------RDR----WLQQAEQRG----------------LGDNALYWWLHAQRYIPGQPELALNDLTRS-L--NI 605 (987)
T ss_pred HHH---------HHH----HHHHHHhcC----------------CccHHHHHHHHHHHHhCCCHHHHHHHHHHH-H--Hh
Confidence 888 777 776666543 1122222222 23 6699999999998 3 44
Q ss_pred CCChHHHHHhhhccCCCCCCChHHHHHHHHh-cCCCCcc--chHHHHHHHHHhcCHHHHHHHHHHhhh-hhchhhccchh
Q psy767 637 GSNTETLRDYVLPVLSPPNQVSGEVFSQLRS-VGVTIGS--ITSAYVVHMLRQHNLKEAALLAKSFRA-HYAKVVVRPVL 712 (902)
Q Consensus 637 ~P~~~t~~~lv~~~~~~~~~~~~~~~~~l~~-~g~~~~~--~~~~~l~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~l 712 (902)
.|+...|..+...+..... .+++...+++ ....|+. ....+-..+...|++++|++.+++... .++.......+
T Consensus 606 ~P~~~a~~~LA~~l~~lG~--~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 606 APSANAYVARATIYRQRHN--VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred CCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5677777777665555333 4445555553 3445555 444555556899999999999998765 35555667778
Q ss_pred hhhhhccCCchhHHHHHHHHH
Q psy767 713 AVSYLRTQDLPSLVTVVRAVC 733 (902)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~ 733 (902)
+.++...|+++..++.++...
T Consensus 684 A~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 889999999999999888876
No 16
>KOG4422|consensus
Probab=99.65 E-value=7.6e-13 Score=137.51 Aligned_cols=362 Identities=14% Similarity=0.106 Sum_probs=251.1
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
.+..+|.+||.|+++.-..+.|.+++.+-.....+.+..+||.+ |.+-.-.. ..+++.+|....++||..
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~l------I~~~S~~~----~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGL------IGASSYSV----GKKLVAEMISQKMTPNLF 274 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhh------hhHHHhhc----cHHHHHHHHHhhcCCchH
Confidence 37789999999999999999999999999988888999999999 66544332 278999999999999999
Q ss_pred HHHHHHHHHHhCCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH-HH----HHHHhcccCCCcc----
Q psy767 161 VFNALIYGHSQANDMAS----AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS-IK----TKIPSLKPQSELF---- 227 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~----A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~-a~----~l~~~~~~~~~~~---- 227 (902)
|+|+++++.++.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +. ++...+..+...|
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998865 56788999999999999999999999999988754 33 3444444433332
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHH
Q psy767 228 LCFSFQLTNLLILVSSDMASAEGILTMMSQAG----LEPSA---QTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYL 300 (902)
Q Consensus 228 ~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g----~~pd~---~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~ 300 (902)
+...+...+.++....+.+.|.++..-+.... +.|+. .-|.-+....|+....+.-+.+|+.|..+-..|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 34456667777778899999999887776532 23332 335667888899999999999999999998889888
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCccc
Q psy767 301 DIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD 380 (902)
Q Consensus 301 tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~ 380 (902)
+++..+.+..-.+.++.+..++. .+...|...+.....-++. ++-.-+..|..+.
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~------------D~~~~ght~r~~l~eeil~-------------~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWK------------DSKEYGHTFRSDLREEILM-------------LLARDKLHPLTPE 489 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHH------------HHHHhhhhhhHHHHHHHHH-------------HHhcCCCCCCChH
Confidence 88888887777777766666553 3555554444333333332 2222333444343
Q ss_pred HHHHHHHHHHcC-Ch-HHHHHHHHHcccCCCCCCCHHHH-HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHh
Q psy767 381 YLDIIHALAVSG-HG-EYIDEIISKIQPGVGYSADAANH-IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRH 457 (902)
Q Consensus 381 ~~~li~~~~~~g-~~-~~A~~l~~~m~~~~g~~pd~~t~-i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~ 457 (902)
-..+-...+++- ++ +.....-.+|.. ..+.|...+. ...+.+.|+.++|.++|..+.+.+...|..|.. +
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~-~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l-n----- 562 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRA-QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL-N----- 562 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHh-ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch-h-----
Confidence 223333332221 12 222333345554 6677777764 344568999999999998887766555554422 0
Q ss_pred hhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHH
Q psy767 458 MVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLAR 497 (902)
Q Consensus 458 ~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~ 497 (902)
....+++.-.+......|...++-|..
T Consensus 563 -------------Am~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 563 -------------AMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred -------------hHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 112244444455566666666666644
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.60 E-value=2.1e-11 Score=145.79 Aligned_cols=402 Identities=11% Similarity=-0.046 Sum_probs=259.1
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
+......|.+.|++++|+..|++..+ +.|+...|..+ ..+|.+.|++++|...++...+.+ +.+...|..+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~------a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~ 200 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNR------AACHNALGDWEKVVEDTTAALELD-PDYSKALNRR 200 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHH------HHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 44566778889999999999999885 46788888888 899999999999999999988765 5567789999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCC---------------------
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS--------------------- 224 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~--------------------- 224 (902)
-.+|...|++++|+.-|......+-..+.. ...++..+........+...++.-....
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 999999999999998887665442111111 1111111111000111111111110000
Q ss_pred ------Cccc-hhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 225 ------ELFL-CFSFQLTNLL---ILVSSDMASAEGILTMMSQAG-LEP-SAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 225 ------~~~~-~~~~~~~~~~---~~~~g~~~~A~~l~~~m~~~g-~~p-d~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
..+. ...+..+... ....+++++|...|+.....+ ..| +...|+.+...+...|++++|+..|++...
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000 0000000000 012468889999999888765 233 456788888888899999999999998765
Q ss_pred CCCCC--CHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 293 SLVNG--DYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLL 369 (902)
Q Consensus 293 ~~~~p--~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~ 369 (902)
..... .+..+...+...++. +.+...+. .... ..| +..+|..+...|...|++++|...|
T Consensus 360 l~P~~~~~~~~la~~~~~~g~~---~eA~~~~~------------~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGDP---DKAEEDFD------------KALK--LNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCCH---HHHHHHHH------------HHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 43211 122333333333333 33332221 1111 233 5788999999999999999999999
Q ss_pred HH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q psy767 370 AQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGE 446 (902)
Q Consensus 370 ~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~ 446 (902)
++ +...|.... |..+...+.+.|++++|+..|++......-.|+.+. +-..+...|++++|...|+...... |.
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---p~ 499 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE---KE 499 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---Cc
Confidence 98 444444333 667888899999999999999998873222233333 3445668999999999999987642 11
Q ss_pred cccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHH
Q psy767 447 QLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDK 525 (902)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~ 525 (902)
..... ... ....+ ....+...|++++|.++++...... +.....+..+...+...|+ .++
T Consensus 500 ~~~~~--------------~~~-~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~---p~~~~a~~~la~~~~~~g~-~~e 560 (615)
T TIGR00990 500 TKPMY--------------MNV-LPLINKALALFQWKQDFIEAENLCEKALIID---PECDIAVATMAQLLLQQGD-VDE 560 (615)
T ss_pred ccccc--------------ccH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHccC-HHH
Confidence 10000 000 00111 2222445799999999999987653 2345578899999999999 999
Q ss_pred HHHHHHHHHHC
Q psy767 526 VLAVCHRLTDE 536 (902)
Q Consensus 526 A~~l~~~m~~~ 536 (902)
|+.+|++..+.
T Consensus 561 Ai~~~e~A~~l 571 (615)
T TIGR00990 561 ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999997654
No 18
>KOG4626|consensus
Probab=99.60 E-value=1.1e-12 Score=141.75 Aligned_cols=426 Identities=13% Similarity=0.073 Sum_probs=302.9
Q ss_pred hhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchH
Q psy767 22 SEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFS 101 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~ 101 (902)
+|.|.+|.+.+.......+.+.-....+-..+....+++....--..... ..+.-..+|..+...+-..|++++
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r------~~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR------KNPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh------ccchHHHHHHHHHHHHHHhchHHH
Confidence 47778888777666555544433333333444444333332221111111 123345678889999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH-HHHHHHhCCCHHHHH
Q psy767 102 PTDFLAKLESQGIEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA-LIYGHSQANDMASAE 179 (902)
Q Consensus 102 A~~l~~~M~~~g~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~-Li~~~~~~g~~~~A~ 179 (902)
|+.+++.|.+. +| ....|..+ ..++...|+.+.|...|.+..+.+ |+.....+ +-..+-..|++++|.
T Consensus 135 al~~y~~aiel--~p~fida~inl------a~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 135 ALALYRAAIEL--KPKFIDAYINL------AAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHHHHHHHHhc--CchhhHHHhhH------HHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhH
Confidence 99999999975 34 56778888 899999999999999998877654 55544433 334444578999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q psy767 180 GILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQA 258 (902)
Q Consensus 180 ~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~ 258 (902)
..|.+..+. .|. .+.|+.|-..+-..|++-.|++.|++....++... ..|.-+..++...+.++.|...|......
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~-dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL-DAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch-HHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 999888876 454 35788888889999999999999999888665543 35666777888889999999888877765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHH
Q psy767 259 GLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMS 338 (902)
Q Consensus 259 g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~ 338 (902)
. +-..+++..|...|...|.++-|+..|++...
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---------------------------------------------- 314 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---------------------------------------------- 314 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHh----------------------------------------------
Confidence 2 33466788888899999999999999987322
Q ss_pred hcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH
Q psy767 339 QAGLEPS-AQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA 415 (902)
Q Consensus 339 ~~g~~p~-~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 415 (902)
+.|+ ...|+.|..++-..|++.+|.+.+.+ +...+..++ .+.|...|...|..++|..+|....+ +.|+..
T Consensus 315 ---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~a 388 (966)
T KOG4626|consen 315 ---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFA 388 (966)
T ss_pred ---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhh
Confidence 3444 35788888888888888888888877 444444444 67788888888888888888888877 777654
Q ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHH
Q psy767 416 ----NHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRI 491 (902)
Q Consensus 416 ----t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l 491 (902)
++-..|-.+|++++|...+++..+ |.|+-.+ ...|+-..|-..|+.+.|.+.
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAd---------------------a~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFAD---------------------ALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHH---------------------HHHhcchHHHHhhhHHHHHHH
Confidence 255566688888888888887765 3443211 123466668888999999888
Q ss_pred HHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh-hhHHHHH
Q psy767 492 VNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRA-FNLAVLI 549 (902)
Q Consensus 492 ~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll 549 (902)
+.....- +|.-..+.+.|...|-..|. ..+|+.-++.... ++||- ..|-.++
T Consensus 445 y~rAI~~---nPt~AeAhsNLasi~kDsGn-i~~AI~sY~~aLk--lkPDfpdA~cNll 497 (966)
T KOG4626|consen 445 YTRAIQI---NPTFAEAHSNLASIYKDSGN-IPEAIQSYRTALK--LKPDFPDAYCNLL 497 (966)
T ss_pred HHHHHhc---CcHHHHHHhhHHHHhhccCC-cHHHHHHHHHHHc--cCCCCchhhhHHH
Confidence 8776653 33345677888888989998 9999999998655 56763 3344444
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.59 E-value=2.3e-12 Score=153.74 Aligned_cols=322 Identities=10% Similarity=-0.015 Sum_probs=203.6
Q ss_pred HHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHh
Q psy767 49 LNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISN 127 (902)
Q Consensus 49 l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~ 127 (902)
++..+.+.|++++|..++..... ..+-+...+..++.++...|++++|...|+++... .| +...+..+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~------~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~l--- 116 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVL------TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLV--- 116 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHH------hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHH---
Confidence 34455566666666666666655 12223333444445555567777777777776653 23 33445555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 128 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~ 207 (902)
...+...|++++|...++...... +.+...|..+...+...|++++|...++.+...... +...+.. +..+...
T Consensus 117 ---a~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~ 190 (656)
T PRK15174 117 ---ASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNK 190 (656)
T ss_pred ---HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHc
Confidence 666666677777777776666543 344556666666677777777777777666554221 1222222 2335666
Q ss_pred CChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----H
Q psy767 208 GDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS----V 283 (902)
Q Consensus 208 g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~----A 283 (902)
|++++|...++.+..................+...|++++|...++...... +.+...+..+...|.+.|++++ |
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 7777777666665554333333333333445555666777776666666543 3445556666666666666664 5
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCH
Q psy767 284 RRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDM 362 (902)
Q Consensus 284 ~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~ 362 (902)
...|++. .. +.| +..++..+...+.+.|++
T Consensus 270 ~~~~~~A-----------------------------------------------l~--l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 270 AEHWRHA-----------------------------------------------LQ--FNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHHHHH-----------------------------------------------Hh--hCCCCHHHHHHHHHHHHHCCCH
Confidence 5555542 11 233 567889999999999999
Q ss_pred HHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHH
Q psy767 363 DSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNT 436 (902)
Q Consensus 363 ~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~ 436 (902)
++|...+++ +...|..+. +..+..++...|++++|.+.|+++.. ..|+... ....+...|+.++|...|+.
T Consensus 301 ~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~---~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 301 EKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR---EKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998 444555544 66788899999999999999999987 4565433 23456799999999999999
Q ss_pred HHhc
Q psy767 437 LARS 440 (902)
Q Consensus 437 m~~~ 440 (902)
..+.
T Consensus 378 al~~ 381 (656)
T PRK15174 378 YIQA 381 (656)
T ss_pred HHHh
Confidence 8775
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.59 E-value=9.3e-12 Score=148.56 Aligned_cols=352 Identities=10% Similarity=-0.046 Sum_probs=261.5
Q ss_pred CCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHc
Q psy767 58 SLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQD 137 (902)
Q Consensus 58 ~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~ 137 (902)
+++.--..|...++...++.|-..+. -.++..+.+.|++.+|+.+++........+ ...+..+ ..++...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l------~~~~l~~ 89 (656)
T PRK15174 20 DWEGLCLYFSQHPEKVRDSAGNEQNI---ILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRW------VISPLAS 89 (656)
T ss_pred chhhHhHHhhcccHhhhhhcccccCH---HHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHH------hhhHhhc
Confidence 33333334444444444444433333 356778889999999999999998765443 3334445 5666779
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHH
Q psy767 138 GNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTK 216 (902)
Q Consensus 138 g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l 216 (902)
|+++.|...|+.+.... |.+...|..+...+.+.|++++|...|++..+. .|+ ...+..+...+...|+.++|...
T Consensus 90 g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~ 166 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISL 166 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHH
Confidence 99999999999998875 566788999999999999999999999999886 444 56788899999999999999999
Q ss_pred HHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCC
Q psy767 217 IPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVN 296 (902)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~ 296 (902)
++.+...........+. . ..+...|++++|..+++.+....-.++...+..+..++.+.|++++|+..|++....
T Consensus 167 ~~~~~~~~P~~~~a~~~-~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--- 241 (656)
T PRK15174 167 ARTQAQEVPPRGDMIAT-C-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--- 241 (656)
T ss_pred HHHHHHhCCCCHHHHHH-H-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 99876654433332222 2 346778999999999999887654455566666778899999999999999973221
Q ss_pred CCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHH-
Q psy767 297 GDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDS----IRRLLAQ- 371 (902)
Q Consensus 297 p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~----A~~~~~~- 371 (902)
.+.+...+..+..+|...|++++ |...|++
T Consensus 242 ---------------------------------------------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 242 ---------------------------------------------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred ---------------------------------------------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 12256777888999999999986 7888887
Q ss_pred cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q psy767 372 NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGE 446 (902)
Q Consensus 372 m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~ 446 (902)
+...|..+. +..+...+...|++++|...+++... ..|+... +...+...|++++|...++.+.... |.
T Consensus 277 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~ 350 (656)
T PRK15174 277 LQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK---GV 350 (656)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cc
Confidence 444444443 78899999999999999999999987 5666543 3455679999999999999887752 22
Q ss_pred cccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHcc
Q psy767 447 QLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSA 499 (902)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~ 499 (902)
.+. ........+...|+.++|...|+......
T Consensus 351 ~~~---------------------~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSK---------------------WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chH---------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 110 11223445889999999999999987763
No 21
>KOG4422|consensus
Probab=99.59 E-value=1.7e-11 Score=127.59 Aligned_cols=304 Identities=13% Similarity=0.168 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHH-HHHHHHhhhCC-------
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGA-TKILEFMRDKT------- 154 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A-~~l~~~m~~~~------- 154 (902)
+.+=|.|+.. ...|.+..+.-+|+.|...|+..+...-..|++ +-.|-...++--| ++-|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~----LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFR----LVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHH----HHHhhcCCCCcchhHHHHhhcccccccccccc
Confidence 3455666665 456889999999999999998777766666633 1111111111111 11111221111
Q ss_pred ------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 155 ------------FPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 155 ------------~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
.|-+..+|.+||.|+|+.-..+.|.++|++-.....+.+..+||.+|.+-.-..+ .+++.+|..
T Consensus 191 K~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis 266 (625)
T KOG4422|consen 191 KSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMIS 266 (625)
T ss_pred ccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHH
Confidence 2335589999999999999999999999999888788899999999887654433 455555555
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHhccCCCCC
Q psy767 223 QSELFLCFSFQLTNLLILVSSDMAS----AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS-VRRLLAQSGSSLVNG 297 (902)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~-A~~lf~~m~~~~~~p 297 (902)
....|+..+++.+.....+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ |..+..++.+
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N----- 341 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN----- 341 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH-----
Confidence 5555555555555555555554432 34455556666666666666666666655555433 2222222211
Q ss_pred CHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcC---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q psy767 298 DYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAG---LEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQNG 373 (902)
Q Consensus 298 ~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g---~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~m~ 373 (902)
.+.... +.| |...|..-++.|.+..+.+-|.++-.-.+
T Consensus 342 --------------------------------------~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~ 383 (625)
T KOG4422|consen 342 --------------------------------------SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLK 383 (625)
T ss_pred --------------------------------------hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 111222 222 44556666677777777777776654321
Q ss_pred CC------C--Cccc--HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHHh
Q psy767 374 SS------L--VNGD--YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLAR 439 (902)
Q Consensus 374 ~~------~--~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~~ 439 (902)
.. | ...+ |..+....|+....+..+..|+.|.. .-+-|+..+ ++.++...|.++-.-+++..+..
T Consensus 384 tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 384 TGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred cCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 11 0 1111 45677888888889999999999988 667787776 35566677888877777777654
No 22
>KOG4626|consensus
Probab=99.53 E-value=8.2e-12 Score=135.26 Aligned_cols=411 Identities=12% Similarity=0.100 Sum_probs=269.5
Q ss_pred HHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q psy767 87 NALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALI 166 (902)
Q Consensus 87 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li 166 (902)
..|.+-.-+.|++.+|++.....-.... -+....-.+ -..+.+..+++....--....+ ..+.-..+|..+.
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll------~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~a 123 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLL------SAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLA 123 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeee------hhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHH
Confidence 3455555667777777766554433221 111111112 2334444444443332222222 2234456777777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCH
Q psy767 167 YGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDM 245 (902)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 245 (902)
+.+-..|++.+|+.+|+.|.+. .| ....|..+..++...|+.+.|.+.|-...+.++..- ...+.+..++...|++
T Consensus 124 N~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~-ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLY-CARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchh-hhhcchhHHHHhhccc
Confidence 7777777777777777777765 34 344677777777777777777776666655433211 1222233444456777
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhccC--CCCCCHHHHHHHHHHcCCcccHHHHHHHH
Q psy767 246 ASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSVRRLLAQSGSS--LVNGDYLDIIHALAVSGHGEYIDEVSAIV 322 (902)
Q Consensus 246 ~~A~~l~~~m~~~g~~pd-~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~--~~~p~~~tl~~~l~~~~~~~~~~~~~~l~ 322 (902)
++|...|.+..+. .|. .+.|+.|-..+-..|+...|+.-|++...- ...+.|..+-..+...+..+.+-...
T Consensus 201 ~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y--- 275 (966)
T KOG4626|consen 201 EEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY--- 275 (966)
T ss_pred chhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH---
Confidence 7777766666554 333 456777777777777777777777775432 22333555555555555444333221
Q ss_pred HHhhhhhcccccchHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHH
Q psy767 323 CFVNICFHWLEGPMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDE 399 (902)
Q Consensus 323 ~~~~~~~~~~~~~~m~~~g~~p~-~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~ 399 (902)
.......|+ ..+|..|...|...|.+|-|++.+++ +...|.-+. |+.|..++...|+..+|..
T Consensus 276 --------------~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 276 --------------LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred --------------HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHH
Confidence 334455675 57788888899999999999999998 666666665 9999999999999999999
Q ss_pred HHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHH
Q psy767 400 IISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANH 475 (902)
Q Consensus 400 l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 475 (902)
.|.+... +.|+... +-..+...|++++|..+|.....-+ |. ....+.|+
T Consensus 342 cYnkaL~---l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~---p~---------------------~aaa~nNL 394 (966)
T KOG4626|consen 342 CYNKALR---LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF---PE---------------------FAAAHNNL 394 (966)
T ss_pred HHHHHHH---hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC---hh---------------------hhhhhhhH
Confidence 9999988 5565543 5566679999999999998877642 11 11134567
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcc
Q psy767 476 IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPR-AFNLAVLIKAHVL 554 (902)
Q Consensus 476 i~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~ 554 (902)
-..|-.+|++++|..-+++.... .|.-...|+.+...|-..|+ .+.|++.+.+... +.|. +..++.|.+.+ -
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI---~P~fAda~~NmGnt~ke~g~-v~~A~q~y~rAI~--~nPt~AeAhsNLasi~-k 467 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRI---KPTFADALSNMGNTYKEMGD-VSAAIQCYTRAIQ--INPTFAEAHSNLASIY-K 467 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhc---CchHHHHHHhcchHHHHhhh-HHHHHHHHHHHHh--cCcHHHHHHhhHHHHh-h
Confidence 77799999999999999988775 33345789999999999999 9999999998766 3554 45667777666 4
Q ss_pred cccccCcchh
Q psy767 555 KEDYTGAVET 564 (902)
Q Consensus 555 ~~~~~g~~~~ 564 (902)
..|++.+
T Consensus 468 ---DsGni~~ 474 (966)
T KOG4626|consen 468 ---DSGNIPE 474 (966)
T ss_pred ---ccCCcHH
Confidence 7889998
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.53 E-value=2.7e-10 Score=136.27 Aligned_cols=377 Identities=12% Similarity=0.028 Sum_probs=228.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~ 209 (902)
-..+.+.|+++.|...|+..... .|+...|..+..+|.+.|++++|++.++...+. .| +...|..+..+|...|+
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCC
Confidence 67788999999999999998764 578889999999999999999999999999886 45 45688889999999999
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC------------------------------
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAG------------------------------ 259 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g------------------------------ 259 (902)
+++|..-|......+..........+...+.. .+........+..
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKK-----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH-----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 99999877655433222221111111111110 1111111111100
Q ss_pred -CCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHhccCC-CCCCHHHHHHHHHHc-CCcccHHHHHHHHHHhhhhhccc
Q psy767 260 -LEPSA-QTYTKLMCG---YAKHGDMDSVRRLLAQSGSSL-VNGDYLDIIHALAVS-GHGEYIDEVSAIVCFVNICFHWL 332 (902)
Q Consensus 260 -~~pd~-~ty~~LI~a---~~~~g~~~~A~~lf~~m~~~~-~~p~~~tl~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~ 332 (902)
..+.. ..+..+... ....+++++|.+.|++....+ ..|........+..+ ...+..+.+...+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~--------- 355 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS--------- 355 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH---------
Confidence 00000 000000000 123468999999999987654 234322211111111 11222333322211
Q ss_pred ccchHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCC
Q psy767 333 EGPMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVG 409 (902)
Q Consensus 333 ~~~~m~~~g~~p~-~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g 409 (902)
....+.|+ ...|..+...|...|++++|...|++ +...|..+. |..+...+...|++++|.+.|++...
T Consensus 356 -----kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--- 427 (615)
T TIGR00990 356 -----KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--- 427 (615)
T ss_pred -----HHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence 11223454 55778888888888999999888887 344444443 77788888888999999999988877
Q ss_pred CCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCCh
Q psy767 410 YSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQI 485 (902)
Q Consensus 410 ~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~ 485 (902)
..|+... +...+.+.|++++|...|+...+.+ |..+. ....+...+...|++
T Consensus 428 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---P~~~~---------------------~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF---PEAPD---------------------VYNYYGELLLDQNKF 483 (615)
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChH---------------------HHHHHHHHHHHccCH
Confidence 6676543 2334558888999998888877643 22110 122345557788889
Q ss_pred HHHHHHHHHHHHccCCCC-Cccc---hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccccccC
Q psy767 486 DAAYRIVNTLARSANING-EQLP---VGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRA-FNLAVLIKAHVLKEDYTG 560 (902)
Q Consensus 486 ~~A~~l~~~m~~~~~~~~-~~~~---~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~~~~~g 560 (902)
++|.+.|+.......... .... .++.....+...|+ +++|+.++++.... .|+. ..+..+...+ . ..|
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~-~~eA~~~~~kAl~l--~p~~~~a~~~la~~~-~---~~g 556 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD-FIEAENLCEKALII--DPECDIAVATMAQLL-L---QQG 556 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-H---Hcc
Confidence 999888888776532211 0111 12222223334577 88898888887664 3443 3466666666 5 788
Q ss_pred cchh
Q psy767 561 AVET 564 (902)
Q Consensus 561 ~~~~ 564 (902)
+.++
T Consensus 557 ~~~e 560 (615)
T TIGR00990 557 DVDE 560 (615)
T ss_pred CHHH
Confidence 8888
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.53 E-value=3.8e-10 Score=138.02 Aligned_cols=209 Identities=11% Similarity=-0.059 Sum_probs=137.7
Q ss_pred hhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchH
Q psy767 22 SEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFS 101 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~ 101 (902)
.|++++|...+..+....+.+..++..+...|...|+.++|+..+++... ..|+...|..++..+ +++.+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~-------ldP~n~~~~~~La~i---~~~~k 126 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK-------RHPGDARLERSLAAI---PVEVK 126 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCcccHHHHHHHHHh---ccChh
Confidence 48899999999988888888899999999999999999999999999987 456555555555444 88999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHH--------HHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH-HHHHHhC
Q psy767 102 PTDFLAKLESQGIEPNRVTYQQLISNSKLISK--------YCQDGNIEGATKILEFMRDKTFPISEGVFNAL-IYGHSQA 172 (902)
Q Consensus 102 A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~--------~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L-i~~~~~~ 172 (902)
|..+++++...... +..++..+ ... |.+. +.|.+.++ .......|+..+.... .+.|.+.
T Consensus 127 A~~~ye~l~~~~P~-n~~~~~~l------a~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 127 SVTTVEELLAQQKA-CDAVPTLR------CRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHH------HHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 99999999976432 33344333 332 4443 55555554 3222223334444444 7778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q psy767 173 NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK-HGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGI 251 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~-~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l 251 (902)
|++++|++++.++.+.+.. +..-...|-.+|.. .++ +++..++.. ....+......+...+...|+.+.|..+
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred hCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888777532 33334455556665 355 555555332 1123445555666666667777777777
Q ss_pred HHHHHH
Q psy767 252 LTMMSQ 257 (902)
Q Consensus 252 ~~~m~~ 257 (902)
+.++..
T Consensus 270 L~~~~~ 275 (987)
T PRK09782 270 LIENKP 275 (987)
T ss_pred HHhCcc
Confidence 766654
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.50 E-value=2.5e-10 Score=139.19 Aligned_cols=401 Identities=11% Similarity=-0.019 Sum_probs=261.7
Q ss_pred CCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHH
Q psy767 55 SEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKY 134 (902)
Q Consensus 55 ~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~ 134 (902)
..|+.++|..++..... .-+.+...+..+...+...|++++|..+|++..+.. +.+...+..+ ...+
T Consensus 27 ~~g~~~~A~~~~~~~~~------~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l------a~~l 93 (765)
T PRK10049 27 WAGQDAEVITVYNRYRV------HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL------ILTL 93 (765)
T ss_pred HcCCHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH------HHHH
Confidence 35666667666665553 123445568888888888888888888888877542 2234455556 7778
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHH
Q psy767 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSI 213 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~~~~a 213 (902)
...|++++|...++...+.. +.+.. |..+..++...|+.++|+..|+++.+. .| +...+..+..++...+..+.|
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHH
Confidence 88888888888888887763 45556 888888888888888888888888876 34 344556667777788888888
Q ss_pred HHHHHhcccCCCccc---hhhHHHHHHHHHh-----cCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHH
Q psy767 214 KTKIPSLKPQSELFL---CFSFQLTNLLILV-----SSDM---ASAEGILTMMSQA-GLEPSAQ-TY----TKLMCGYAK 276 (902)
Q Consensus 214 ~~l~~~~~~~~~~~~---~~~~~~~~~~~~~-----~g~~---~~A~~l~~~m~~~-g~~pd~~-ty----~~LI~a~~~ 276 (902)
.+.++.......... .........+... .+++ +.|...++.+.+. .-.|+.. .+ ...+.++..
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 888877665211000 0011111111111 1223 6677777777753 2223221 11 111345567
Q ss_pred cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHH
Q psy767 277 HGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGY 356 (902)
Q Consensus 277 ~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y 356 (902)
.|++++|...|+++...+. ..|+. .-..+..+|
T Consensus 250 ~g~~~eA~~~~~~ll~~~~----------------------------------------------~~P~~-a~~~la~~y 282 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQ----------------------------------------------IIPPW-AQRWVASAY 282 (765)
T ss_pred hhhHHHHHHHHHHhhccCC----------------------------------------------CCCHH-HHHHHHHHH
Confidence 7888888888887433211 11322 112246689
Q ss_pred HHcCCHHHHHHHHHHcC-CCCCc-----ccHHHHHHHHHHcCChHHHHHHHHHcccCCC----------CCCCHH-----
Q psy767 357 AKHGDMDSIRRLLAQNG-SSLVN-----GDYLDIIHALAVSGHGEYIDEIISKIQPGVG----------YSADAA----- 415 (902)
Q Consensus 357 ~~~g~~~~A~~~~~~m~-~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g----------~~pd~~----- 415 (902)
...|++++|..+|++.. ..+.. ..+..+..++...|++++|.++++.+..... -.|+..
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999853 23222 1245567788999999999999999876321 123321
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHH
Q psy767 416 -NHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNT 494 (902)
Q Consensus 416 -t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~ 494 (902)
.....+...|+.++|.++++++.... |..+. ..+.+...+...|+.++|++.++.
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~---P~n~~---------------------l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNA---PGNQG---------------------LRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH---------------------HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 12445668999999999999988752 22211 234456668899999999999999
Q ss_pred HHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q psy767 495 LARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLI 549 (902)
Q Consensus 495 m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll 549 (902)
..... |.++..+-.....+...|+ +++|+.+++++.+. .|+......+-
T Consensus 419 al~l~---Pd~~~l~~~~a~~al~~~~-~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 419 AEVLE---PRNINLEVEQAWTALDLQE-WRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred HHhhC---CCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88864 3345566677778888999 99999999998874 56665554444
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.44 E-value=7e-10 Score=135.39 Aligned_cols=156 Identities=9% Similarity=-0.001 Sum_probs=129.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~ 209 (902)
+......|+.++|+++|....... +.+...+..+...+.+.|++++|..+|++..+. .| +...+..+...+...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 667788999999999999987633 556677999999999999999999999998876 34 45677788889999999
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
.++|...++......+.... +..+..++...|+.++|...++++.+.. +.+...+..+..++...|..++|++.++.
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN--LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 99999999999876444333 7777778888999999999999999874 44566667788888899999999999986
Q ss_pred hcc
Q psy767 290 SGS 292 (902)
Q Consensus 290 m~~ 292 (902)
...
T Consensus 176 ~~~ 178 (765)
T PRK10049 176 ANL 178 (765)
T ss_pred CCC
Confidence 543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.43 E-value=7.4e-09 Score=124.29 Aligned_cols=433 Identities=12% Similarity=0.082 Sum_probs=293.0
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNR--VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
|...|. ..+.|++..|+..|++..+. .|+. ..+ .+ +..+...|+.++|+.+++...... +.......
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dl------l~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DW------LQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HH------HHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 444443 46789999999999999865 4553 234 66 888889999999999999987322 22334444
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcC
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSS 243 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 243 (902)
++...|...|++++|+++|+++.+.... +...+..++..+...++.++|.+.++.+...... ...+..+..++...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHHHHHHHHHHhcc
Confidence 4466888999999999999999988422 4567778889999999999999999999887655 333344444444467
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHH----HHHHHHcC---Cc----
Q psy767 244 DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDI----IHALAVSG---HG---- 312 (902)
Q Consensus 244 ~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl----~~~l~~~~---~~---- 312 (902)
+..+|...++++.+.. +-+...+..+..+..+.|-...|+++..+-..--...+...+ +.-..+.+ ..
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 7767999999999885 556778899999999999999999888874322222221111 11111111 10
Q ss_pred --ccHHHHHHHHHHhhhhhcccccchHHhcCCCCCH-HH----HHHHHHHHHHcCCHHHHHHHHHHcCCCCC-cccHH--
Q psy767 313 --EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSA-QT----YTKLMCGYAKHGDMDSIRRLLAQNGSSLV-NGDYL-- 382 (902)
Q Consensus 313 --~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~-~t----~~~Li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~-- 382 (902)
..++.+..-.. ..+...+-.|.. .. .--.+-++...|++.++++.|+.+...+. .|.|.
T Consensus 263 r~~~~d~ala~~~-----------~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 263 RFDIADKALADYQ-----------NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred hHHHHHHHHHHHH-----------HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 11222221111 012223333432 22 22345678899999999999999987774 47775
Q ss_pred HHHHHHHHcCChHHHHHHHHHcccCCC---CCCCHH----HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc-chhhH
Q psy767 383 DIIHALAVSGHGEYIDEIISKIQPGVG---YSADAA----NHIYHLINKGQIDAAYRIVNTLARSANINGEQLP-VGGFL 454 (902)
Q Consensus 383 ~li~~~~~~g~~~~A~~l~~~m~~~~g---~~pd~~----t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~-~~~~~ 454 (902)
.+.++|...+++++|..+|+.+....+ ..|+.. .+..++...+++++|..+++.+.+. .|.... .+
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~---~p~~~~~~~--- 405 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ---TPYQVGVYG--- 405 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCcEEeccC---
Confidence 699999999999999999999865332 122222 3678888999999999999999874 111000 00
Q ss_pred HHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy767 455 VRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLT 534 (902)
Q Consensus 455 ~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~ 534 (902)
.....|+..+.-.....+..+...|++.+|++.++.+.... |.+......+...+...|. +.+|.+.++...
T Consensus 406 ----~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a---P~n~~l~~~~A~v~~~Rg~-p~~A~~~~k~a~ 477 (822)
T PRK14574 406 ----LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA---PANQNLRIALASIYLARDL-PRKAEQELKAVE 477 (822)
T ss_pred ----CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence 00012222222111224455889999999999999997763 2345678889999999999 999999997665
Q ss_pred HCCCCCChh-hHHHHHHHhcccccccCcchh
Q psy767 535 DENLHPRAF-NLAVLIKAHVLKEDYTGAVET 564 (902)
Q Consensus 535 ~~g~~Pd~~-t~~~ll~a~~~~~~~~g~~~~ 564 (902)
.. .|+.. +......++ . ..|++.+
T Consensus 478 ~l--~P~~~~~~~~~~~~a-l---~l~e~~~ 502 (822)
T PRK14574 478 SL--APRSLILERAQAETA-M---ALQEWHQ 502 (822)
T ss_pred hh--CCccHHHHHHHHHHH-H---hhhhHHH
Confidence 54 67643 334444444 4 6677777
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.34 E-value=1.7e-08 Score=121.24 Aligned_cols=178 Identities=10% Similarity=0.028 Sum_probs=103.1
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC-CC----Cccc---HHHHHHHHHHcCChHHHHHHHHHcccCC
Q psy767 337 MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGS-SL----VNGD---YLDIIHALAVSGHGEYIDEIISKIQPGV 408 (902)
Q Consensus 337 m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~-~~----~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~ 408 (902)
+...|......+-.++.++|...++.++|..+|+..-. .+ ..++ ...|..+|..++++++|..+++.+.+..
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 44444444445666677777777777777777776421 11 1111 3556777777777777777777776521
Q ss_pred C------------CCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccch
Q psy767 409 G------------YSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADA 472 (902)
Q Consensus 409 g------------~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 472 (902)
. ..||-.. .+..+...|+..+|++.++.+.....-++. ..
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~------------------------l~ 453 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQN------------------------LR 453 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------------HH
Confidence 1 1111111 244456777788888877777654211111 01
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhh
Q psy767 473 ANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFN 544 (902)
Q Consensus 473 ~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t 544 (902)
...-..+...|...+|+..++..... .|.+..+.-.....+...++ +++|..+.+.+.+. .|+...
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l---~P~~~~~~~~~~~~al~l~e-~~~A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESL---APRSLILERAQAETAMALQE-WHQMELLTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh---CCccHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhh--CCCchh
Confidence 12333366777888888887665554 22344455566666667777 78887777776654 455443
No 29
>KOG2002|consensus
Probab=99.33 E-value=1.4e-07 Score=108.65 Aligned_cols=553 Identities=13% Similarity=0.071 Sum_probs=307.7
Q ss_pred CCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHH--CCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHhHHHHHHH
Q psy767 59 LGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLD--NEHTFSPTDFLAKLESQ--GIEPNRVTYQQLISNSKLISKY 134 (902)
Q Consensus 59 ~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~--~g~~~~A~~l~~~M~~~--g~~pd~~t~~~ll~~~~li~~~ 134 (902)
++.|...|..... .-++|+.. .+.+++.. .+++..|+.+|...... ...||..+- + -..+
T Consensus 146 ~~~A~a~F~~Vl~------~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--i------g~Cf 209 (1018)
T KOG2002|consen 146 MDDADAQFHFVLK------QSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--I------GHCF 209 (1018)
T ss_pred HHHHHHHHHHHHh------hCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--h------hhHH
Confidence 4677777777765 23334433 44555443 56788888888886543 345565432 1 2344
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA---NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~---g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
.+.|+.+.|...|+...+.+ |-++.++-.|--.-... ..+..++.++...-... .-|++..+.|.+-|.-.|++.
T Consensus 210 ~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~ 287 (1018)
T KOG2002|consen 210 WKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYE 287 (1018)
T ss_pred HhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHH
Confidence 67888888888888877765 22233332222221222 23455666655554432 236667777788888888888
Q ss_pred HHHHHHHhcccCCCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 212 SIKTKIPSLKPQSEL--FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS--AQTYTKLMCGYAKHGDMDSVRRLL 287 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~ty~~LI~a~~~~g~~~~A~~lf 287 (902)
.+..+...+...... .-...|.-+...+-..|+++.|...|.+..... +| +..+-.|...|.+.|+++.+...|
T Consensus 288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHH
Confidence 888877777654422 223345566666777888888888887776653 33 334455778888888888888888
Q ss_pred HHhccCCC-CCCHHHHHHHH-HHc-CCcccHHHHHHHHHHhhhhhcccccchHHhcCC---CCCHHHHHHHHHHHHHcCC
Q psy767 288 AQSGSSLV-NGDYLDIIHAL-AVS-GHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGL---EPSAQTYTKLMCGYAKHGD 361 (902)
Q Consensus 288 ~~m~~~~~-~p~~~tl~~~l-~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~---~p~~~t~~~Li~~y~~~g~ 361 (902)
+....... .+.-..++..+ ... ......+.+..+. .... +.|...|-.+-..|....-
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l----------------~K~~~~~~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVL----------------GKVLEQTPVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHH----------------HHHHhcccccHHHHHHHHHHHHhcCh
Confidence 87654321 11111122222 222 1222333333322 2222 3355666666666554443
Q ss_pred H------HHHHHHHHHcCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccC--CCCCCCH-----HH--H--HHHHHH
Q psy767 362 M------DSIRRLLAQNGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPG--VGYSADA-----AN--H--IYHLIN 423 (902)
Q Consensus 362 ~------~~A~~~~~~m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~--~g~~pd~-----~t--~--i~~l~~ 423 (902)
+ ..|..++...... .++- .|.+.......|.+++|.+.|+..... ...++|. .| + -..+-.
T Consensus 430 ~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~ 508 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE 508 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh
Confidence 3 3344444443333 3333 577777778888888888888776542 0123333 22 2 222236
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchH-HHHHHHHhcCChHHHHHHHHHHHHccCCC
Q psy767 424 KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAA-NHIYHLINKGQIDAAYRIVNTLARSANIN 502 (902)
Q Consensus 424 ~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~li~~~~k~g~~~~A~~l~~~m~~~~~~~ 502 (902)
.++.+.|.+.++.+.+.+ +||. +.| .+.-+.-..+...+|...++.....+..
T Consensus 509 l~~~~~A~e~Yk~Ilkeh------------------------p~YI-d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~- 562 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKEH------------------------PGYI-DAYLRLGCMARDKNNLYEASLLLKDALNIDSS- 562 (1018)
T ss_pred hhhhhHHHHHHHHHHHHC------------------------chhH-HHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-
Confidence 678888888888888752 1121 111 1111122335677888888877765433
Q ss_pred CCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHH
Q psy767 503 GEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE-NLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGEL 581 (902)
Q Consensus 503 ~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~-g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~l 581 (902)
++..+..+...+.+... +..|.+-|+...+. -..+|+.+...|-.. .
T Consensus 563 --np~arsl~G~~~l~k~~-~~~a~k~f~~i~~~~~~~~D~YsliaLGN~-----------------------------~ 610 (1018)
T KOG2002|consen 563 --NPNARSLLGNLHLKKSE-WKPAKKKFETILKKTSTKTDAYSLIALGNV-----------------------------Y 610 (1018)
T ss_pred --CcHHHHHHHHHHHhhhh-hcccccHHHHHHhhhccCCchhHHHHhhHH-----------------------------H
Confidence 34566666656666555 66676655554332 122344333333321 2
Q ss_pred HHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhhhHHHHHHHHHHHHHHhCCCCC----hHHHHHhhhccCCCCCCC
Q psy767 582 LKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFLDAEVLRILQVAEAEFGVGSN----TETLRDYVLPVLSPPNQV 657 (902)
Q Consensus 582 l~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~~~~~al~ll~~m~~~~g~~P~----~~t~~~lv~~~~~~~~~~ 657 (902)
++.+... .+. + .-..+..++|+.++.+.. ...|- .... ..|.+.......
T Consensus 611 ~~~l~~~---------------~rn-~-----ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGI-giVLA~kg~~~~- 664 (1018)
T KOG2002|consen 611 IQALHNP---------------SRN-P-----EKEKKHQEKALQLYGKVL---RNDPKNMYAANGI-GIVLAEKGRFSE- 664 (1018)
T ss_pred HHHhccc---------------ccC-h-----HHHHHHHHHHHHHHHHHH---hcCcchhhhccch-hhhhhhccCchH-
Confidence 2222211 110 0 112334777777777762 22322 1111 223333333333
Q ss_pred hHHHHHHHHhcCCCCccchHHHHHHHHHhcCHHHHHHHHHHhhh-hh--chhhccchhhhhhhccCCchhHHH-HHHHH
Q psy767 658 SGEVFSQLRSVGVTIGSITSAYVVHMLRQHNLKEAALLAKSFRA-HY--AKVVVRPVLAVSYLRTQDLPSLVT-VVRAV 732 (902)
Q Consensus 658 ~~~~~~~l~~~g~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~ 732 (902)
...+|.+.++.......++.++...++..|++-.|+++.+.-.. ++ +...+..+|+.++-+.+.|....+ ++.++
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34488888888877777788888888888999999998887554 33 344566677777777777666544 44444
No 30
>KOG2002|consensus
Probab=99.27 E-value=1.3e-07 Score=108.89 Aligned_cols=443 Identities=14% Similarity=0.072 Sum_probs=270.2
Q ss_pred CCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCC--CCHHHHHHHHHhHHHHHHHH
Q psy767 58 SLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIE--PNRVTYQQLISNSKLISKYC 135 (902)
Q Consensus 58 ~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~--pd~~t~~~ll~~~~li~~~~ 135 (902)
.+..|..++..... ..+ -+++.-|.|-+.|.-.|++..++.+...+...... --+.+|-.+ -.+|-
T Consensus 251 s~~~~~~ll~~ay~----~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~------gRs~H 318 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYK----ENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQL------GRSYH 318 (1018)
T ss_pred HHHHHHHHHHHHHh----hcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH------HHHHH
Confidence 34444444444444 122 25566778888899999999999999988775411 123346667 88999
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC----
Q psy767 136 QDGNIEGATKILEFMRDKTFPISE--GVFNALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHG---- 208 (902)
Q Consensus 136 ~~g~~~~A~~l~~~m~~~~~~p~~--~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g---- 208 (902)
..|+++.|...|-+-.+.+ |+. ..+--|...|.+.|+++.+...|+...+. .|| ..|...|-..|+..+
T Consensus 319 a~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred hhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhH
Confidence 9999999999987765543 333 34456778999999999999999998886 454 456666766777665
Q ss_pred ChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 209 DMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILT----MMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 209 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~----~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
..+.|..++....... +.+...|..+..++... +...++.+|. .|...+..+.....|.+-..+...|++.+|.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 4566777776666544 33444555555555443 3333355544 4456677788899999999999999999999
Q ss_pred HHHHHhccC---CCCCCH-----HHHHHHHHHcCCc-ccHHHHHHHHHHhhhhhcccccchHHhcCCCCC-HHHHHHHHH
Q psy767 285 RLLAQSGSS---LVNGDY-----LDIIHALAVSGHG-EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS-AQTYTKLMC 354 (902)
Q Consensus 285 ~lf~~m~~~---~~~p~~-----~tl~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~-~~t~~~Li~ 354 (902)
..|.+.... ...++. .|+---++++... ...+.+..++.- +. .-.|+ +..|--+..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~------------Il--kehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS------------IL--KEHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH------------HH--HHCchhHHHHHHhhH
Confidence 999886543 112222 2222222222111 112222222110 11 11233 334444544
Q ss_pred HHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHH---HHH-------
Q psy767 355 GYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIY---HLI------- 422 (902)
Q Consensus 355 ~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~---~l~------- 422 (902)
+....+...+|...++. +......|+ |+-+...+.+...+..|.+-|..........+|.+++|. .+.
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 44555777778877777 344444444 555555777777777777766655543444477776421 111
Q ss_pred -----HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHH
Q psy767 423 -----NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLAR 497 (902)
Q Consensus 423 -----~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~ 497 (902)
..+..++|+++|.+..+.. |.+.. ....+-..++.+|++.+|..+|....+
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~~d---pkN~y---------------------AANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLRND---PKNMY---------------------AANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHhcC---cchhh---------------------hccchhhhhhhccCchHHHHHHHHHHH
Confidence 3345677777777766642 22110 011244457778888888888888777
Q ss_pred ccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHH-HHHCCCCCChhhHHHHHHHhcccccccCcchh
Q psy767 498 SANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHR-LTDENLHPRAFNLAVLIKAHVLKEDYTGAVET 564 (902)
Q Consensus 498 ~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~-m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~ 564 (902)
.... ...+|-.+.+.|+..|. +..|+++|+. |....-.-+......|.+++ . +.|.+.+
T Consensus 675 a~~~---~~dv~lNlah~~~e~~q-y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~-y---~~~~~~e 734 (1018)
T KOG2002|consen 675 ATSD---FEDVWLNLAHCYVEQGQ-YRLAIQMYENCLKKFYKKNRSEVLHYLARAW-Y---EAGKLQE 734 (1018)
T ss_pred HHhh---CCceeeeHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCHHHHHHHHHHH-H---HhhhHHH
Confidence 6431 22456667777888888 8888888887 45555455566667777776 5 5666655
No 31
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=2.6e-11 Score=92.21 Aligned_cols=50 Identities=28% Similarity=0.454 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 157 ISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206 (902)
Q Consensus 157 p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~ 206 (902)
||+++||+||++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 32
>KOG2076|consensus
Probab=99.18 E-value=1.2e-05 Score=92.77 Aligned_cols=335 Identities=14% Similarity=0.090 Sum_probs=240.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 158 (902)
+.|.+..--.........|+.++|.+++.+..+.... +...|.+| -..|-..|+.+++...+-.....+ |-|
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL------~~IyEqrGd~eK~l~~~llAAHL~-p~d 206 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTL------GEIYEQRGDIEKALNFWLLAAHLN-PKD 206 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHH------HHHHHHcccHHHHHHHHHHHHhcC-CCC
Confidence 4444544444444444459999999999999986433 56678888 999999999999998776554443 667
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHH--
Q psy767 159 EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTN-- 236 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~-- 236 (902)
...|-.+-....+.|.++.|.-.|.+..+.. .++...+--=...|-+.|+...|...|.++....+..+..-+...+
T Consensus 207 ~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 207 YELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 7999999999999999999999999999874 2343444455677889999999999999998876644443333332
Q ss_pred --HHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC---------------
Q psy767 237 --LLILVSSDMASAEGILTMMSQ-AGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD--------------- 298 (902)
Q Consensus 237 --~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~--------------- 298 (902)
..+...++.+.|.+.+..... .+-..+...++.++..|.+...++.|......+......++
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 233335666888888887765 23356677888999999999999999998888766222221
Q ss_pred ------------HHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC--CHHHHHHHHHHHHHcCCHHH
Q psy767 299 ------------YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP--SAQTYTKLMCGYAKHGDMDS 364 (902)
Q Consensus 299 ------------~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p--~~~t~~~Li~~y~~~g~~~~ 364 (902)
... +....-.-+.+..+....+..+ .....+.| +...|.-+.++|...|++.+
T Consensus 366 ~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~------------l~~~n~~~~d~~dL~~d~a~al~~~~~~~~ 432 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHF------------LVEDNVWVSDDVDLYLDLADALTNIGKYKE 432 (895)
T ss_pred ccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHH------------HHHhcCChhhhHHHHHHHHHHHHhcccHHH
Confidence 111 1111111222222222222222 33444333 56788999999999999999
Q ss_pred HHHHHHHcCCCCCccc---HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHH
Q psy767 365 IRRLLAQNGSSLVNGD---YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTL 437 (902)
Q Consensus 365 A~~~~~~m~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m 437 (902)
|+.+|..+...+...+ |--+...|...|.++.|.+.|++... ..|+... +-..+-+.|+.++|.+.+..+
T Consensus 433 Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 433 ALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 9999999766555444 88899999999999999999999988 7777653 555667999999999999886
Q ss_pred H
Q psy767 438 A 438 (902)
Q Consensus 438 ~ 438 (902)
.
T Consensus 510 ~ 510 (895)
T KOG2076|consen 510 I 510 (895)
T ss_pred c
Confidence 5
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.13 E-value=3.7e-08 Score=110.95 Aligned_cols=288 Identities=10% Similarity=0.011 Sum_probs=186.4
Q ss_pred HHHHHHHHHH--CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 86 YNALLRVYLD--NEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 86 yn~li~~~~~--~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
+..+..|... .|+++.|.+.+....+..-.| ...|-.. ..+..+.|+++.|...|..+.+. .|+...+-
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p-~l~~lla------A~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~ 155 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQP-VVNYLLA------AEAAQQRGDEARANQHLERAAEL--ADNDQLPV 155 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccch-HHHHHHH------HHHHHHCCCHHHHHHHHHHHHhc--CCcchHHH
Confidence 3344444332 589999998887765542222 2223222 44447889999999999998764 45543332
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchh-------hHHH
Q psy767 164 --ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCF-------SFQL 234 (902)
Q Consensus 164 --~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~-------~~~~ 234 (902)
.....+...|+++.|...++++.+.. +-+...+..+...|.+.|+|++|.+++..+.+........ .+..
T Consensus 156 ~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 156 EITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 33567888899999999999998875 2255677888889999999999999999988876654331 2222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCccc
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEY 314 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~ 314 (902)
+........+.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+.
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--------------------- 292 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--------------------- 292 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------
Confidence 233333345566677777766543 2567888899999999999999999999874332
Q ss_pred HHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcC
Q psy767 315 IDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSG 392 (902)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g 392 (902)
.|+... .++.+....++.+++.+..+. .+..|..+. +.++...|...+
T Consensus 293 ----------------------------~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 293 ----------------------------QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG 342 (398)
T ss_pred ----------------------------CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 222211 122233344666666666665 344455554 556667777777
Q ss_pred ChHHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHH
Q psy767 393 HGEYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLA 438 (902)
Q Consensus 393 ~~~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~ 438 (902)
++++|.+.|+...+ ..|+..+ +...+.+.|+.++|..++++-.
T Consensus 343 ~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 343 EWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777766 5566554 2344557777777777776553
No 34
>PF13041 PPR_2: PPR repeat family
Probab=99.12 E-value=1.2e-10 Score=88.56 Aligned_cols=50 Identities=26% Similarity=0.535 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~ 136 (902)
||+.+||++|++|++.|++++|+++|++|.+.|+.||..||+++ |++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l------i~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL------INGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH------HHHHcC
Confidence 89999999999999999999999999999999999999999999 999875
No 35
>KOG2076|consensus
Probab=99.11 E-value=1.3e-05 Score=92.27 Aligned_cols=327 Identities=12% Similarity=0.053 Sum_probs=216.9
Q ss_pred hcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHhHH
Q psy767 51 SKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISNSK 129 (902)
Q Consensus 51 ~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~ 129 (902)
..+++ |++++|.+++.+... -.+.....|-+|-..|-..|+.++++..+-..- ...| |..-|..+
T Consensus 148 ~lfar-g~~eeA~~i~~EvIk------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~l----- 213 (895)
T KOG2076|consen 148 NLFAR-GDLEEAEEILMEVIK------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRL----- 213 (895)
T ss_pred HHHHh-CCHHHHHHHHHHHHH------hCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHH-----
Confidence 33444 888888888888887 244466778889999999998888887774433 3333 55667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH
Q psy767 130 LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ----TYTKLMCGYA 205 (902)
Q Consensus 130 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~----ty~~ll~a~~ 205 (902)
-....+.|.++.|.-.|.+..+.+ |++...+--=+..|-+.|+...|...|.++.......|.. +--.++..+.
T Consensus 214 -adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 214 -ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred -HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 788888888999998888888776 6666665566677888888888888888887763211221 2223456666
Q ss_pred HcCChhHHHHHHHhccc-CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------------
Q psy767 206 KHGDMDSIKTKIPSLKP-QSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS--------------------- 263 (902)
Q Consensus 206 ~~g~~~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------------- 263 (902)
..++.+.|.+.++.... .+.......++++..++.+...++.|......+.....++|
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 77777778877776665 33445566777888888888888888888777776332222
Q ss_pred ------HHHHHHHHH-HHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccch
Q psy767 264 ------AQTYTKLMC-GYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPM 336 (902)
Q Consensus 264 ------~~ty~~LI~-a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (902)
..+...+|. ...+.+...+++.-|-.-..-.+.-++..+..+-.+.-+.+....+..+++ .
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~------------~ 439 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS------------P 439 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH------------H
Confidence 222111221 222334444554444433332222233333333333444444445544443 2
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 337 MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 337 m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
+......-+..+|--+..+|...|.++.|.+.|++ +...|+..+ -.+|-..+.+.|+.++|++.+..|.
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 34444444688999999999999999999999998 455555555 4568888999999999999999975
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.07 E-value=4.4e-08 Score=110.92 Aligned_cols=199 Identities=12% Similarity=-0.021 Sum_probs=137.7
Q ss_pred HHHHHHHHHHH--HCCCchHHHHHHHHHHHCCCCCCHHH-HHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH-
Q psy767 84 SHYNALLRVYL--DNEHTFSPTDFLAKLESQGIEPNRVT-YQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE- 159 (902)
Q Consensus 84 ~~yn~li~~~~--~~g~~~~A~~l~~~M~~~g~~pd~~t-~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~- 159 (902)
..+..+..|.. ..|+++.|.+.+....+. .|+... +-.. ..++.+.|+.+.|.+.+....+.. |+.
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~lla------A~aa~~~g~~~~A~~~l~~a~~~~--p~~~ 152 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKA------AEAAQQRGDEARANQHLEEAAELA--GNDN 152 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHH------HHHHHHCCCHHHHHHHHHHHHHhC--CcCc
Confidence 34555666654 479999999999887765 444333 3333 566778899999999999976543 333
Q ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHH
Q psy767 160 -GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL 238 (902)
Q Consensus 160 -~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (902)
...-+....+...|+++.|...++.+.+... -+...+..+...+...|++++|.+++..+.+.+..........-...
T Consensus 153 l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a 231 (409)
T TIGR00540 153 ILVEIARTRILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA 231 (409)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 2344457788889999999999999998852 25567888999999999999999999999987654333222111111
Q ss_pred H---HhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 239 I---LVSSDMASAEGILTMMSQAG---LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 239 ~---~~~g~~~~A~~l~~~m~~~g---~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
. ...+..+.....+..+.... .+.+...+..+...+...|+.++|.+++++..+.
T Consensus 232 ~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 232 EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 1 11222222233444444332 1248889999999999999999999999986554
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.07 E-value=3.5e-10 Score=121.47 Aligned_cols=191 Identities=15% Similarity=0.083 Sum_probs=46.6
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q psy767 88 ALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY-QQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALI 166 (902)
Q Consensus 88 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~-~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li 166 (902)
.+-..+.+.|++++|+++++.-......|+...| ..+ ...+-..++++.|...++.+...+ +-+...+..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~------a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLL------ADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccc-ccccccccccc
Confidence 4466677788888888888654433323433333 333 445556778888888888887665 23556677777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCC-ccchhhHHHHHHHHHhcCCH
Q psy767 167 YGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSE-LFLCFSFQLTNLLILVSSDM 245 (902)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 245 (902)
.. ...+++++|.+++...-+. .++...+..++..+.+.++++++..+++.+..... ..+...+.....++...|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 76 6778888888887776554 34566667777778888888877777777654221 22334444445555556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 246 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 246 ~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
++|...+++..+.. +-|....+.++..+...|+.+++.+++..
T Consensus 163 ~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~ 205 (280)
T PF13429_consen 163 DKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKR 205 (280)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 66666666555542 22355555566666666666655555543
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.04 E-value=5.5e-08 Score=109.55 Aligned_cols=252 Identities=12% Similarity=0.014 Sum_probs=132.1
Q ss_pred HHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC
Q psy767 93 YLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA 172 (902)
Q Consensus 93 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~ 172 (902)
..+.|+++.|...|.++.+. .|+...+..+ .....+...|+++.|...++.+.+.+-......... ...|.+.
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l----~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll-~~~~~~~ 200 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEI----TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLA-EQAYIRT 200 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHH----HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHH
Confidence 35566666666666666543 3343322211 003455566666666666666655432111222222 2344555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCH
Q psy767 173 NDMASAEGILTMMSQAGLEPSA-------QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDM 245 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd~-------~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 245 (902)
|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+...- ..++.....+...+...|+.
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCH
Confidence 6666666666666665443221 133333444444444455555555544321 22344445555555666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHh
Q psy767 246 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFV 325 (902)
Q Consensus 246 ~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~ 325 (902)
+.|..++.+..+. +||... .++.+.+..++.+++++..+...+.
T Consensus 280 ~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-------------------------------- 323 (398)
T PRK10747 280 DTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-------------------------------- 323 (398)
T ss_pred HHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--------------------------------
Confidence 6666666666553 344311 1233334446677776666653211
Q ss_pred hhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCcccHHHHHHHHHHcCChHHHHHHHHHc
Q psy767 326 NICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGDYLDIIHALAVSGHGEYIDEIISKI 404 (902)
Q Consensus 326 ~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 404 (902)
.+-|...+.++-..|.+.|++++|.+.|+. +...|+..+|..+...+.+.|+.++|.+++++-
T Consensus 324 ----------------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 324 ----------------HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred ----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112344556666677777777777777766 344455555666777777777777777777654
No 39
>KOG0593|consensus
Probab=99.02 E-value=2.2e-11 Score=122.19 Aligned_cols=58 Identities=34% Similarity=0.655 Sum_probs=54.5
Q ss_pred HhhhhcCCCcccccC------CCCCCCCCCCCCC-------------------CCCCCCcchhhhHHHhhcCCCccCCCC
Q psy767 823 LGALTSDDLMPQPLQ------YVPSMFIPRGQPL-------------------RCLDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 823 l~~~~~~~l~~~~~~------~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
++.+|.|+|+|+|++ +|.|+.+|+|+|| +||+|||.+|++|+||+.|||||+|.+
T Consensus 213 ~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H~yFd~~~e 292 (396)
T KOG0593|consen 213 LIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHHPYFDGFIE 292 (396)
T ss_pred HHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhcChHHHHHHH
Confidence 688999999999987 8999999999998 999999999999999999999999998
Q ss_pred CCC
Q psy767 878 EVP 880 (902)
Q Consensus 878 ~~~ 880 (902)
...
T Consensus 293 r~~ 295 (396)
T KOG0593|consen 293 REL 295 (396)
T ss_pred HHH
Confidence 754
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.00 E-value=9.9e-08 Score=108.05 Aligned_cols=289 Identities=10% Similarity=-0.003 Sum_probs=202.6
Q ss_pred cCCCCCCcCcccccCccccccCCCCCCCCH-HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHH
Q psy767 54 CSEPSLGPGNLPCEDPFSVHTGELDVPLDI-SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLIS 132 (902)
Q Consensus 54 ~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~-~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~ 132 (902)
...|+++.|++.+..... ..|+. ..|-....++.+.|+++.|.+.+.+..+....+.....-.. ..
T Consensus 95 ~~~g~~~~A~~~l~~~~~-------~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~------a~ 161 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD-------HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR------TR 161 (409)
T ss_pred HhCCCHHHHHHHHHHHhh-------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH------HH
Confidence 357888888888876655 33443 34445566678889999999999998765433222233334 67
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HHcC
Q psy767 133 KYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT-KLMCGY---AKHG 208 (902)
Q Consensus 133 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~-~ll~a~---~~~g 208 (902)
.+...|+++.|...++.+.+.. |-+...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..++ ...+
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999998886 557778899999999999999999999999998754 333332 111222 2223
Q ss_pred ChhHHHHHHHhcccCCCc---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHH
Q psy767 209 DMDSIKTKIPSLKPQSEL---FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQT---YTKLMCGYAKHGDMDS 282 (902)
Q Consensus 209 ~~~~a~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t---y~~LI~a~~~~g~~~~ 282 (902)
..+++...+..+....+. .+...+..+...+...|+.+.|..++++..+.. ||... ...........++.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHH
Confidence 333333344444333222 256677777788889999999999999999863 44332 1222233344577888
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCH
Q psy767 283 VRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDM 362 (902)
Q Consensus 283 A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~ 362 (902)
+.+.++.. .....-.|+.....++...|.+.|++
T Consensus 318 ~~~~~e~~----------------------------------------------lk~~p~~~~~~ll~sLg~l~~~~~~~ 351 (409)
T TIGR00540 318 LEKLIEKQ----------------------------------------------AKNVDDKPKCCINRALGQLLMKHGEF 351 (409)
T ss_pred HHHHHHHH----------------------------------------------HHhCCCChhHHHHHHHHHHHHHcccH
Confidence 88888752 23333334335667888899999999
Q ss_pred HHHHHHHHH---cCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 363 DSIRRLLAQ---NGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 363 ~~A~~~~~~---m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++-.
T Consensus 352 ~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999993 4556677778899999999999999999998753
No 41
>KOG0495|consensus
Probab=98.99 E-value=0.0001 Score=81.94 Aligned_cols=487 Identities=11% Similarity=0.049 Sum_probs=310.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 158 (902)
++.++..|-.. ......+.|.-++.+..+. -|.+. -| .-+|++..-++.|.++++...+. ++-+
T Consensus 376 iP~sv~LWKaA----VelE~~~darilL~rAvec--cp~s~---dL------wlAlarLetYenAkkvLNkaRe~-iptd 439 (913)
T KOG0495|consen 376 IPRSVRLWKAA----VELEEPEDARILLERAVEC--CPQSM---DL------WLALARLETYENAKKVLNKAREI-IPTD 439 (913)
T ss_pred CCchHHHHHHH----HhccChHHHHHHHHHHHHh--ccchH---HH------HHHHHHHHHHHHHHHHHHHHHhh-CCCC
Confidence 44455556544 3456667788888777754 23221 12 44567778888888888887664 6778
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccc--hhhH
Q psy767 159 EGVFNALIYGHSQANDMASAEGILTM----MSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL--CFSF 232 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~~A~~l~~~----M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~--~~~~ 232 (902)
...|.+-...=-.+|+.+...++..+ +...|+.-+...|-.=..+|-+.|..-....+.......+.... ..++
T Consensus 440 ~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw 519 (913)
T KOG0495|consen 440 REIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTW 519 (913)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHH
Confidence 88888888888888888888887764 45668888888888777888888877777777777666554432 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHH--HHHHHHcC
Q psy767 233 QLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDI--IHALAVSG 310 (902)
Q Consensus 233 ~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl--~~~l~~~~ 310 (902)
..-...+.+.+.++-|..+|....+. ++.+...|...+..=-..|..++...+|++....-......-+ ....-..
T Consensus 520 ~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a- 597 (913)
T KOG0495|consen 520 LDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA- 597 (913)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-
Confidence 44555566677788888888877754 2556777888888778888888888888886554332221111 1112222
Q ss_pred CcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcccHHHHHHHH
Q psy767 311 HGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGDYLDIIHAL 388 (902)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~~~~li~~~ 388 (902)
+++..+..++. ......| +...|-+-+..-....+++.|..+|.+- ...|...-|.--+...
T Consensus 598 --gdv~~ar~il~--------------~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 598 --GDVPAARVILD--------------QAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLE 661 (913)
T ss_pred --CCcHHHHHHHH--------------HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHH
Confidence 33333333331 1122233 5678999999999999999999999884 4455666677777777
Q ss_pred HHcCChHHHHHHHHHcccCCCCCCCHHHHHHH----HHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCC
Q psy767 389 AVSGHGEYIDEIISKIQPGVGYSADAANHIYH----LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQP 464 (902)
Q Consensus 389 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~----l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~ 464 (902)
--.++.++|.+++++..+ .-|+...+... +-..++++.|...+..=.+.. |..+
T Consensus 662 r~ld~~eeA~rllEe~lk---~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c---P~~i---------------- 719 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALK---SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC---PNSI---------------- 719 (913)
T ss_pred HHhhhHHHHHHHHHHHHH---hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC---CCCc----------------
Confidence 778899999999999887 66776654322 236677777777665443331 1111
Q ss_pred CCccccchHHHHHH-HHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChh
Q psy767 465 GVGYSADAANHIYH-LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAF 543 (902)
Q Consensus 465 ~~g~~~~~~~li~~-~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~ 543 (902)
-..-++.- =.+.|.+-.|..+|+....+ +|.....|-..|+.-.+.|. .+.|..+..+..+. +.-+..
T Consensus 720 ------pLWllLakleEk~~~~~rAR~ildrarlk---NPk~~~lwle~Ir~ElR~gn-~~~a~~lmakALQe-cp~sg~ 788 (913)
T KOG0495|consen 720 ------PLWLLLAKLEEKDGQLVRARSILDRARLK---NPKNALLWLESIRMELRAGN-KEQAELLMAKALQE-CPSSGL 788 (913)
T ss_pred ------hHHHHHHHHHHHhcchhhHHHHHHHHHhc---CCCcchhHHHHHHHHHHcCC-HHHHHHHHHHHHHh-CCccch
Confidence 11222222 34778999999999988876 34456789999999999999 99999988885543 333445
Q ss_pred hHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhh----h
Q psy767 544 NLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSF----L 619 (902)
Q Consensus 544 t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~----~ 619 (902)
-|.--|+.. .+.++-.. ..+.|+++. -+ +|++..+-+.. .
T Consensus 789 LWaEaI~le----~~~~rkTk----------------s~DALkkce--------------~d--phVllaia~lfw~e~k 832 (913)
T KOG0495|consen 789 LWAEAIWLE----PRPQRKTK----------------SIDALKKCE--------------HD--PHVLLAIAKLFWSEKK 832 (913)
T ss_pred hHHHHHHhc----cCcccchH----------------HHHHHHhcc--------------CC--chhHHHHHHHHHHHHH
Confidence 555555332 24444333 556666665 23 66555544332 2
Q ss_pred HHHHHHHHHHHHHHhCCCCC-hHHHHHhhhcc-CCCCCCChHHHHHHHHhcCCC
Q psy767 620 DAEVLRILQVAEAEFGVGSN-TETLRDYVLPV-LSPPNQVSGEVFSQLRSVGVT 671 (902)
Q Consensus 620 ~~~al~ll~~m~~~~g~~P~-~~t~~~lv~~~-~~~~~~~~~~~~~~l~~~g~~ 671 (902)
.+.|++.|.+. - .+.|| -.+|.-+..-. .++.++.-.+++.....+...
T Consensus 833 ~~kar~Wf~Ra-v--k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 833 IEKAREWFERA-V--KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHHHHH-H--ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 88899999888 2 34454 22333333222 224443344455555544333
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.95 E-value=4.4e-09 Score=112.91 Aligned_cols=253 Identities=15% Similarity=0.047 Sum_probs=108.9
Q ss_pred hHHhhcHHHHHHHhc-cccch-hHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHC
Q psy767 19 TEVSEATAEVTTVLG-ALGAF-LVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDN 96 (902)
Q Consensus 19 ~~~s~~~~~a~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~ 96 (902)
.-..+.+..|..++. ..... .+.+..++..+..-....++++.|...++.+.. .+.. +...+..++.. ...
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-----~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-----SDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccc-ccccccccccc-ccc
Confidence 334588888888884 34444 466777777777777889999999999999987 2211 34556677776 788
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhCCCH
Q psy767 97 EHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT-FPISEGVFNALIYGHSQANDM 175 (902)
Q Consensus 97 g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~yn~Li~~~~~~g~~ 175 (902)
+++++|.+++....+.. ++...+... +..+.+.++++.+..+++...... .+.+...|..+...+.+.|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~------l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSA------LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccccc--cccchhhHH------HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 99999999998776543 455667777 888999999999999999976533 456778889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q psy767 176 ASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTM 254 (902)
Q Consensus 176 ~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~ 254 (902)
++|++.|++..+. .|+ ......++..+...|+.+++..++....... ..++..+..+..++...|+.++|...|+.
T Consensus 163 ~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 163 DKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 9999999999887 565 6678889999999999999888888776654 33344556778888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 255 MSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 255 m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
..+.. +.|..+...+..++.+.|+.++|.++.++.
T Consensus 240 ~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 240 ALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred ccccc-cccccccccccccccccccccccccccccc
Confidence 88753 557888888899999999999999998874
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.90 E-value=1e-06 Score=91.06 Aligned_cols=202 Identities=17% Similarity=0.075 Sum_probs=164.7
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
.....|..+...|...|++++|...+++..+.. +.+...+..+ ...|...|++++|.+.++...+.+ +.+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~-~~~~~ 100 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLAL------ALYYQQLGELEKAEDSFRRALTLN-PNNGD 100 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhC-CCCHH
Confidence 346778899999999999999999999988653 2245666777 889999999999999999988765 55667
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI 239 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (902)
.+..+...+...|++++|.+.|++.......| ....+..+...+...|++++|...+......... ....+..+..++
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 179 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHH
Confidence 88889999999999999999999998753222 3456777888899999999999999988775433 344566677778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 240 LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 240 ~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
...|++++|...+++.... .+.+...+..+...+...|+.++|..+++.+..
T Consensus 180 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8899999999999998876 355677788888999999999999998877543
No 44
>KOG1915|consensus
Probab=98.89 E-value=2e-05 Score=84.18 Aligned_cols=421 Identities=10% Similarity=0.042 Sum_probs=261.4
Q ss_pred hhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchH
Q psy767 22 SEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFS 101 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~ 101 (902)
...+..|+.++...-+....|..+|.--+..=.++..+..|+-+|+.... -+|.--..|-..+..--..|++..
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt------~lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT------ILPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH------hcchHHHHHHHHHHHHHHhcccHH
Confidence 34555566666555555555655655556666666777777777776665 122222445555555556677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy767 102 PTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGI 181 (902)
Q Consensus 102 A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l 181 (902)
|.++|+.-. ...|+...|.+. |+.=.+-..++.|..+++...- +.|++.+|---.+.=-++|....|..+
T Consensus 160 aRqiferW~--~w~P~eqaW~sf------I~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 160 ARQIFERWM--EWEPDEQAWLSF------IKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHHHHHH--cCCCcHHHHHHH------HHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 777776655 346777777777 7777777777777777776654 346777777666666677777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH----HHcCChhHHHHHHHhcccCCCcc-chhhHHHHHHHHHhcCCHHHHHHH-----
Q psy767 182 LTMMSQAGLEPSAQTYTKLMCGY----AKHGDMDSIKTKIPSLKPQSELF-LCFSFQLTNLLILVSSDMASAEGI----- 251 (902)
Q Consensus 182 ~~~M~~~g~~pd~~ty~~ll~a~----~~~g~~~~a~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~l----- 251 (902)
|+...+. -.|...--.|..++ .+...++.|.-++.-....-+.. ....|.-+...--+.|+....+..
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 7766543 11222222233333 33444555555555443322221 122233333333335555444443
Q ss_pred ---HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC----HHHHHHH-----HHHcCCcccHHHHH
Q psy767 252 ---LTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD----YLDIIHA-----LAVSGHGEYIDEVS 319 (902)
Q Consensus 252 ---~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~----~~tl~~~-----l~~~~~~~~~~~~~ 319 (902)
++.+.+.+ +.|..+|--.+..--..|+.+...++|+.....-.+.. |..++-+ +-..-...+++...
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 23333333 67788888888888888999999999998765432222 3333332 33333444555555
Q ss_pred HHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHH-cCCCCCcccHHHHHHHHHHcCCh
Q psy767 320 AIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYA----KHGDMDSIRRLLAQ-NGSSLVNGDYLDIIHALAVSGHG 394 (902)
Q Consensus 320 ~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~----~~g~~~~A~~~~~~-m~~~~~~~~~~~li~~~~~~g~~ 394 (902)
+++. . ..+ =++....||..+--+|+ ++.++..|.+++.. ++..|....|-..|..-.+.+++
T Consensus 387 ~vyq---~---------~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 387 QVYQ---A---------CLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HHHH---H---------HHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH
Confidence 5432 1 122 34446678888777775 67899999999987 78888888899999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCHHHHHHHHH----HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcccc
Q psy767 395 EYIDEIISKIQPGVGYSADAANHIYHLI----NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSA 470 (902)
Q Consensus 395 ~~A~~l~~~m~~~~g~~pd~~t~i~~l~----~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~ 470 (902)
+....++++..+ +.|........|+ ..|+.+.|..+|....+.-..+- | ..|
T Consensus 454 DRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm--p---ell---------------- 509 (677)
T KOG1915|consen 454 DRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM--P---ELL---------------- 509 (677)
T ss_pred HHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc--H---HHH----------------
Confidence 999999999998 8887765444443 78999999999998876522110 0 000
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHcc
Q psy767 471 DAANHIYHLINKGQIDAAYRIVNTLARSA 499 (902)
Q Consensus 471 ~~~~li~~~~k~g~~~~A~~l~~~m~~~~ 499 (902)
.-..|+-=..+|.++.|..+++.+....
T Consensus 510 -wkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 510 -WKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred -HHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 1112222346799999999999988764
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.89 E-value=1.3e-06 Score=92.03 Aligned_cols=294 Identities=14% Similarity=0.088 Sum_probs=201.7
Q ss_pred HHHHHHHHH--CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 87 NALLRVYLD--NEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 87 n~li~~~~~--~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
..+..+..+ .|++..|.++..+-.+.+-.|-. .|..- ..+--..|+.+.|-..+.+..+.--.++...+-+
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l-~~l~a------A~AA~qrgd~~~an~yL~eaae~~~~~~l~v~lt 158 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVL-AYLLA------AEAAQQRGDEDRANRYLAEAAELAGDDTLAVELT 158 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHH-HHHHH------HHHHHhcccHHHHHHHHHHHhccCCCchHHHHHH
Confidence 344444443 68888888888887776655432 34444 6666778888888888888877633566677778
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHH----HHHHHH
Q psy767 165 LIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQL----TNLLIL 240 (902)
Q Consensus 165 Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 240 (902)
........|+.+.|..-+.++.+.+.. +.........+|.+.|++.....++..+.+.+...+...... ...++.
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 888888888888888888888877533 556677888888889999988888888888776665543322 222233
Q ss_pred hcCCHHHHHH---HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHH
Q psy767 241 VSSDMASAEG---ILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDE 317 (902)
Q Consensus 241 ~~g~~~~A~~---l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~ 317 (902)
..++-..+.. .++.... ..+.+...-.+++.-+.++|+.++|.++..+..+....|....++..+.-.........
T Consensus 238 q~~~~~~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred HHhccccchHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHH
Confidence 3333333333 3333332 23455667778888899999999999999988777776663333332222222222222
Q ss_pred HHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCcccHHHHHHHHHHcCChHH
Q psy767 318 VSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGDYLDIIHALAVSGHGEY 396 (902)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~~li~~~~~~g~~~~ 396 (902)
+.. .....+..| -.+.+|-..|.+.+.|.+|...|+. +...+...+|+.+.+++.+.|+..+
T Consensus 317 ~e~---------------~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 317 AEK---------------WLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HHH---------------HHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 221 244455555 7788888889999999999999987 6666777778999999999999988
Q ss_pred HHHHHHHccc
Q psy767 397 IDEIISKIQP 406 (902)
Q Consensus 397 A~~l~~~m~~ 406 (902)
|.+++++-..
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 8888887553
No 46
>KOG2003|consensus
Probab=98.88 E-value=1.8e-06 Score=91.00 Aligned_cols=428 Identities=13% Similarity=0.059 Sum_probs=262.3
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHH-HHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC----
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQ-LISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS---- 158 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~-ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---- 158 (902)
.....|..-|..+..+.+|+..|+-..+...-||.-.... + -+.+.+...+..|.+.++..... + |+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmni------gni~~kkr~fskaikfyrmaldq-v-psink~ 273 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNI------GNIHFKKREFSKAIKFYRMALDQ-V-PSINKD 273 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeee------cceeeehhhHHHHHHHHHHHHhh-c-cccchh
Confidence 3344456667777888899999999888877777654322 2 45677888899999988765443 1 22
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchh------
Q psy767 159 --EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCF------ 230 (902)
Q Consensus 159 --~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~------ 230 (902)
....|.+--.+.+.|.++.|+.-|+...+. .||..+-..|+-++..-|+-++..+.|..|......++..
T Consensus 274 ~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 274 MRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred hHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 133455555678899999999999988776 6888876666666777899999999998886543322211
Q ss_pred ---hHHHHHHHHHh----------cCCHHHHHHHHHHHHHCCCCCCHHH---HH------------------HHHHHHHH
Q psy767 231 ---SFQLTNLLILV----------SSDMASAEGILTMMSQAGLEPSAQT---YT------------------KLMCGYAK 276 (902)
Q Consensus 231 ---~~~~~~~~~~~----------~g~~~~A~~l~~~m~~~g~~pd~~t---y~------------------~LI~a~~~ 276 (902)
.-+.+...+.. ..+.+.+.-.-..+..--+.||... |. .-..-|.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 22333332211 1122222222223333333444221 11 11345788
Q ss_pred cCCHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHH--
Q psy767 277 HGDMDSVRRLLAQSGSSLVNGD--YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKL-- 352 (902)
Q Consensus 277 ~g~~~~A~~lf~~m~~~~~~p~--~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~L-- 352 (902)
+|+++.|.++++-..+...... ..+=+.++.......+...+.+..+ +..+..-||.-
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad------------------~aln~dryn~~a~ 493 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD------------------IALNIDRYNAAAL 493 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH------------------HHhcccccCHHHh
Confidence 9999999999987766543322 1122222222222222222222221 11111122211
Q ss_pred ---HHHHHHcCCHHHHHHHHHHcCCCCCccc--HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHH
Q psy767 353 ---MCGYAKHGDMDSIRRLLAQNGSSLVNGD--YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLIN 423 (902)
Q Consensus 353 ---i~~y~~~g~~~~A~~~~~~m~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~ 423 (902)
-..-...|++++|...+++--.....-+ .-.+.-.+-..|+.++|++.|-++.. +-.+... +...|-.
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~---il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA---ILLNNAEVLVQIANIYEL 570 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHH
Confidence 1223456899999999998433211111 11234456688999999999988744 4444443 3344557
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCC
Q psy767 424 KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANING 503 (902)
Q Consensus 424 ~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~ 503 (902)
..+..+|.+++...... .|+.|.+ ...+-..|-+.|+-..|.+..-.-..- -|
T Consensus 571 led~aqaie~~~q~~sl---ip~dp~i---------------------lskl~dlydqegdksqafq~~ydsyry---fp 623 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL---IPNDPAI---------------------LSKLADLYDQEGDKSQAFQCHYDSYRY---FP 623 (840)
T ss_pred hhCHHHHHHHHHHhccc---CCCCHHH---------------------HHHHHHHhhcccchhhhhhhhhhcccc---cC
Confidence 77888888887665543 3333311 223556688999998887765332221 22
Q ss_pred CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHH
Q psy767 504 EQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLK 583 (902)
Q Consensus 504 ~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~ 583 (902)
....+..-|...|....- +++|+.+|++..- ++|+...|-.++.+|+- +.|++.. |.. +++
T Consensus 624 ~nie~iewl~ayyidtqf-~ekai~y~ekaal--iqp~~~kwqlmiasc~r---rsgnyqk---------a~d----~yk 684 (840)
T KOG2003|consen 624 CNIETIEWLAAYYIDTQF-SEKAINYFEKAAL--IQPNQSKWQLMIASCFR---RSGNYQK---------AFD----LYK 684 (840)
T ss_pred cchHHHHHHHHHHHhhHH-HHHHHHHHHHHHh--cCccHHHHHHHHHHHHH---hcccHHH---------HHH----HHH
Confidence 345667778888888888 9999999998644 68999999999977623 7889988 877 888
Q ss_pred HHHHh
Q psy767 584 RFIQA 588 (902)
Q Consensus 584 ~m~~~ 588 (902)
.....
T Consensus 685 ~~hrk 689 (840)
T KOG2003|consen 685 DIHRK 689 (840)
T ss_pred HHHHh
Confidence 87766
No 47
>KOG0495|consensus
Probab=98.87 E-value=5.7e-05 Score=83.87 Aligned_cols=388 Identities=12% Similarity=0.041 Sum_probs=257.5
Q ss_pred HHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHH----hhhCCCCCCHHHHHH
Q psy767 89 LLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEF----MRDKTFPISEGVFNA 164 (902)
Q Consensus 89 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~----m~~~~~~p~~~~yn~ 164 (902)
|.-+|++..-|+.|..+++..++ .++-+..+|.+. ...=-..|+.+.+.++.++ +...|+..+...|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe-~iptd~~IWita------a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKARE-IIPTDREIWITA------AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHH------HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 34455666667778888887776 355577777777 6666777788777777654 455677777777777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhc
Q psy767 165 LIYGHSQANDMASAEGILTMMSQAGLEPS--AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242 (902)
Q Consensus 165 Li~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (902)
=.-.|-+.|..--+..+.......|+.-. ..||..-...|.+.+.++-|..+|....+-.. .....+.....+--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhc
Confidence 77777777777777777777777776533 24777777778888887777777776655221 1122233333333346
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHH
Q psy767 243 SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIV 322 (902)
Q Consensus 243 g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~ 322 (902)
|..++...+|++.... ++.....|-.....+-..|++..|..++.+.-..... +...-+.+.--.......+.+..++
T Consensus 564 gt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHH
Confidence 7777777777777654 2444555666666777777877777777765443221 3333344444445555666666554
Q ss_pred HHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHH
Q psy767 323 CFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEI 400 (902)
Q Consensus 323 ~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l 400 (902)
....+..|+..+|..-+..-.-.++.++|.+++++ ++..|+-+- |..+...+-+.++.+.|.+.
T Consensus 642 --------------akar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 642 --------------AKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred --------------HHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34566888999999988888899999999999987 455444443 77888889999999999999
Q ss_pred HHHcccCCCCCCCHHHHHHHHH----HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHH
Q psy767 401 ISKIQPGVGYSADAANHIYHLI----NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHI 476 (902)
Q Consensus 401 ~~~m~~~~g~~pd~~t~i~~l~----~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li 476 (902)
|..=.+ .-|+..-+...++ +.|.+..|..++++-.-+..-.+. .....|
T Consensus 708 Y~~G~k---~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~------------------------lwle~I 760 (913)
T KOG0495|consen 708 YLQGTK---KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL------------------------LWLESI 760 (913)
T ss_pred HHhccc---cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch------------------------hHHHHH
Confidence 987766 4565554433332 778999999999988765222111 133467
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHH
Q psy767 477 YHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCH 531 (902)
Q Consensus 477 ~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~ 531 (902)
.+=.+.|+.+.|..++......... +-..|.--|....+.++ -.+.+..++
T Consensus 761 r~ElR~gn~~~a~~lmakALQecp~---sg~LWaEaI~le~~~~r-kTks~DALk 811 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQECPS---SGLLWAEAIWLEPRPQR-KTKSIDALK 811 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc---cchhHHHHHHhccCccc-chHHHHHHH
Confidence 7788999999999998887765332 33456666665555555 344443333
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=4.8e-06 Score=85.09 Aligned_cols=295 Identities=14% Similarity=0.122 Sum_probs=162.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHH---HHHHHHHhcCCHHHH
Q psy767 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQ---LTNLLILVSSDMASA 248 (902)
Q Consensus 172 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~A 248 (902)
+.+.++|.++|-+|.+.. .-+..+.-+|-+-|-+.|..+.|++++..+..+.......-.. -+..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 468899999999998852 1133456678888889999999999988887765544332222 222224446677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhh
Q psy767 249 EGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNIC 328 (902)
Q Consensus 249 ~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~ 328 (902)
+.+|..+.+.| ..-.....-|+..|-...+|++|+++-+++.+.+-.+....+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 77777666543 223344555666666666666666666553332211111100
Q ss_pred hcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 329 FHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 329 ~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
...|.-|...+....+++.|..++++ ....+...- -..+...+...|+++.|.+.++.+.+
T Consensus 180 -----------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 180 -----------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred -----------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 11233333334444445555555544 222222111 12233444455555555555555544
Q ss_pred CCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCCh
Q psy767 407 GVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQI 485 (902)
Q Consensus 407 ~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~ 485 (902)
-+|+ |.+.+.. +..+|...|+.
T Consensus 243 ---Qn~~------------------------------------------------------yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 243 ---QNPE------------------------------------------------------YLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred ---hChH------------------------------------------------------HHHHHHHHHHHHHHHhCCH
Confidence 2222 2222222 55567777888
Q ss_pred HHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhh
Q psy767 486 DAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETF 565 (902)
Q Consensus 486 ~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~ 565 (902)
++....+..+....... ..-+.+-........ .+.|..++.+-..+ +|+..-|.-|+... +.....|...+
T Consensus 266 ~~~~~fL~~~~~~~~g~----~~~l~l~~lie~~~G-~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~-l~daeeg~~k~- 336 (389)
T COG2956 266 AEGLNFLRRAMETNTGA----DAELMLADLIELQEG-IDAAQAYLTRQLRR--KPTMRGFHRLMDYH-LADAEEGRAKE- 336 (389)
T ss_pred HHHHHHHHHHHHccCCc----cHHHHHHHHHHHhhC-hHHHHHHHHHHHhh--CCcHHHHHHHHHhh-hccccccchhh-
Confidence 88877777766653211 222333222222222 67787777775554 69999999999776 54446666666
Q ss_pred HhhhhhccCcchHHHHHHHHHHhh
Q psy767 566 EYCVNQFRATPWKGELLKRFIQAE 589 (902)
Q Consensus 566 ~~~~~~~~a~~~~~~ll~~m~~~g 589 (902)
.+. +++.|....
T Consensus 337 --------sL~----~lr~mvge~ 348 (389)
T COG2956 337 --------SLD----LLRDMVGEQ 348 (389)
T ss_pred --------hHH----HHHHHHHHH
Confidence 545 777776655
No 49
>KOG1126|consensus
Probab=98.82 E-value=6.8e-07 Score=99.64 Aligned_cols=278 Identities=12% Similarity=0.064 Sum_probs=195.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc--chhhHHHHHHHHHhcCCHHHHHH
Q psy767 174 DMASAEGILTMMSQAGLEPSA-QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF--LCFSFQLTNLLILVSSDMASAEG 250 (902)
Q Consensus 174 ~~~~A~~l~~~M~~~g~~pd~-~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~ 250 (902)
+..+|+..|...... .+|+ ....-+-++|-..++++++.++|+.+....+-. ....|.+.+.-+- +.-.--.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHH
Confidence 457788888775554 3444 344556778888888888888888887654322 1222322222221 1111111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhc
Q psy767 251 ILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFH 330 (902)
Q Consensus 251 l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 330 (902)
+-+.+.+.. +-...+|.++-+.|.-.++.+.|++.|++..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAi--------------------------------------- 448 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAI--------------------------------------- 448 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhh---------------------------------------
Confidence 222222221 5567899999999999999999999998732
Q ss_pred ccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc---HHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 331 WLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD---YLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 331 ~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
.+.| ..++|+.+-.-+.....+|.|...|+. +.. +..+ |.-+...|.+.++++.|+-.|++..
T Consensus 449 ----------Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 449 ----------QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV 516 (638)
T ss_pred ----------ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhhhhheeccchhhHHHHHHHhhh
Confidence 2345 567888888888888999999999997 333 3444 4558888999999999999999998
Q ss_pred cCCCCCCCHHHHHHH----HHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHh
Q psy767 406 PGVGYSADAANHIYH----LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLIN 481 (902)
Q Consensus 406 ~~~g~~pd~~t~i~~----l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k 481 (902)
+ +.|....++.. +-+.|+.++|+.++++.... +|..+. .-|.....+..
T Consensus 517 ~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~kn~l---------------------~~~~~~~il~~ 569 (638)
T KOG1126|consen 517 E---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPKNPL---------------------CKYHRASILFS 569 (638)
T ss_pred c---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCCCch---------------------hHHHHHHHHHh
Confidence 8 89987654433 45889999999999987653 333221 24556666888
Q ss_pred cCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q psy767 482 KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLH 539 (902)
Q Consensus 482 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~ 539 (902)
.+++++|+..++++.+.. |....+|-.+...|.+.|. .+.|+.-|-.+.+..-+
T Consensus 570 ~~~~~eal~~LEeLk~~v---P~es~v~~llgki~k~~~~-~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELV---PQESSVFALLGKIYKRLGN-TDLALLHFSWALDLDPK 623 (638)
T ss_pred hcchHHHHHHHHHHHHhC---cchHHHHHHHHHHHHHHcc-chHHHHhhHHHhcCCCc
Confidence 899999999999998862 3345678889999999999 89998888887765433
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.80 E-value=4.8e-06 Score=87.73 Aligned_cols=297 Identities=11% Similarity=0.068 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q psy767 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGI 251 (902)
Q Consensus 172 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l 251 (902)
.|++..|+++..+-.+.|-.| ...|..-..+--..|+.+.+-..+.+..+...........+...++...|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555554444222 2233444444555555555555555555544444444444445555555666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcc
Q psy767 252 LTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHW 331 (902)
Q Consensus 252 ~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (902)
..++.+.+ +.+..+......+|.+.|++.....++..|.+.+.-.+... .
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~------------ 225 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------A------------ 225 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------H------------
Confidence 66666554 66778889999999999999999999999877765433110 0
Q ss_pred cccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCc-cc-HHHHHHHHHHcCChHHHHHHHHHcccCCC
Q psy767 332 LEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVN-GD-YLDIIHALAVSGHGEYIDEIISKIQPGVG 409 (902)
Q Consensus 332 ~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~-~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g 409 (902)
.....+|..+++-....+..+.-...|+..+..... |. -.+++.-+.++|+.++|.++..+..+ .+
T Consensus 226 -----------~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~ 293 (400)
T COG3071 226 -----------RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQ 293 (400)
T ss_pred -----------HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hc
Confidence 011245566666666666666656666664333211 22 45677778888888889888888877 66
Q ss_pred CCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHH
Q psy767 410 YSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAY 489 (902)
Q Consensus 410 ~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~ 489 (902)
..|.-.+ ...+.+-++...-.+..+...+.++.+|. -.+++-..|.+.+.|.+|.
T Consensus 294 ~D~~L~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~------------------------L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 294 WDPRLCR-LIPRLRPGDPEPLIKAAEKWLKQHPEDPL------------------------LLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred cChhHHH-HHhhcCCCCchHHHHHHHHHHHhCCCChh------------------------HHHHHHHHHHHhhHHHHHH
Confidence 7776222 22334666777767777776666555543 1334555588999999999
Q ss_pred HHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q psy767 490 RIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPR 541 (902)
Q Consensus 490 ~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd 541 (902)
..|+....... +...|+-+.+.+.+.|+ ..+|.+..++-...-..|+
T Consensus 349 ~~leaAl~~~~----s~~~~~~la~~~~~~g~-~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 349 EALEAALKLRP----SASDYAELADALDQLGE-PEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHhcCC----ChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHHhcCCC
Confidence 99996665532 45789999999999999 8999999988544333443
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.79 E-value=3.1e-06 Score=87.41 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=110.7
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q psy767 118 RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTY 197 (902)
Q Consensus 118 ~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 197 (902)
...+..+ ...|...|++++|...++...+.. +.+...+..+...|...|++++|.+.|++..+.+ ..+...+
T Consensus 31 ~~~~~~l------a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~ 102 (234)
T TIGR02521 31 AKIRVQL------ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVL 102 (234)
T ss_pred HHHHHHH------HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH
Confidence 4556666 888889999999999999887654 4556788888899999999999999999888764 2355677
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcccCCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 198 TKLMCGYAKHGDMDSIKTKIPSLKPQSEL-FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 276 (902)
Q Consensus 198 ~~ll~a~~~~g~~~~a~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~ 276 (902)
..+...+...|++++|.+.++........ .....+..+...+...|++++|...+.+..... +.+...|..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 77788888888888888888877653221 122233334444455566666666666555442 2234455555556666
Q ss_pred cCCHHHHHHHHHH
Q psy767 277 HGDMDSVRRLLAQ 289 (902)
Q Consensus 277 ~g~~~~A~~lf~~ 289 (902)
.|++++|...+++
T Consensus 182 ~~~~~~A~~~~~~ 194 (234)
T TIGR02521 182 RGQYKDARAYLER 194 (234)
T ss_pred cCCHHHHHHHHHH
Confidence 6666666666554
No 52
>KOG1126|consensus
Probab=98.71 E-value=2.4e-06 Score=95.37 Aligned_cols=296 Identities=12% Similarity=0.062 Sum_probs=207.0
Q ss_pred CCCCCCCHHHHHHHHHHHHH------CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHH
Q psy767 76 ELDVPLDISHYNALLRVYLD------NEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEF 149 (902)
Q Consensus 76 ~~g~~pd~~~yn~li~~~~~------~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~ 149 (902)
..++.-+...--.++++++. .-+.++|...|...... +.-+......+ -.+|...+++++|+++|+.
T Consensus 306 ~~~l~~~~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h-~~nt~wvl~q~------GrayFEl~~Y~~a~~~F~~ 378 (638)
T KOG1126|consen 306 SFGLKDDASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSH-HYNTGWVLSQL------GRAYFELIEYDQAERIFSL 378 (638)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-cCCchHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 34455443333344444433 23467888888885543 23233445555 8899999999999999999
Q ss_pred hhhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCc
Q psy767 150 MRDKT--FPISEGVFNALIYGHSQANDMASAEGILT-MMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 150 m~~~~--~~p~~~~yn~Li~~~~~~g~~~~A~~l~~-~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~ 226 (902)
..+.. ..-+...|.+.+--+-+ +-++..+. ++.... +-...||.++-++|.-.++.+.|++.|++..+-+..
T Consensus 379 ~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 379 VRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred HHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence 87643 11245788887765432 23333332 233321 335689999999999999999999999998875543
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHH
Q psy767 227 FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYT---KLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDII 303 (902)
Q Consensus 227 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~---~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~ 303 (902)
...+|+.+..-+....++|.|...|+... ..|...|| .|--.|.+.++++.|+-.|+..
T Consensus 454 -faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA------------- 515 (638)
T KOG1126|consen 454 -FAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA------------- 515 (638)
T ss_pred -cchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHHHHHHhh-------------
Confidence 23455555555666788899999998877 44555554 4667899999999999988763
Q ss_pred HHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-
Q psy767 304 HALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD- 380 (902)
Q Consensus 304 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~- 380 (902)
..+.| |.+....+...+.+.|+.|+|+++|++ ....+..+.
T Consensus 516 ------------------------------------~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 516 ------------------------------------VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC 559 (638)
T ss_pred ------------------------------------hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh
Confidence 23455 566777788899999999999999998 344444443
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHH----HHHHHHcCCHHHHHHHHHHHHhc
Q psy767 381 YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANH----IYHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~----i~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
--..+..+...+++++|+..++++++ +.|+..+. -..|-+.|+.+.|+.-|.-+...
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 23456667788999999999999998 89998763 34456889999999988877653
No 53
>KOG3785|consensus
Probab=98.70 E-value=0.00027 Score=73.15 Aligned_cols=396 Identities=13% Similarity=0.069 Sum_probs=218.3
Q ss_pred HHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q psy767 90 LRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGH 169 (902)
Q Consensus 90 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~ 169 (902)
+.-+..++++..|..+++--...+-+-...+-.-+ ...+.+.|++++|..++..+.+.+ .|+...+-.|.-++
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWi------a~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWI------AHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCK 101 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHH------HHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHH
Confidence 55566788999999999876644322222222223 556678999999999999887766 55666676676666
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHH
Q psy767 170 SQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAE 249 (902)
Q Consensus 170 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 249 (902)
.-.|.+.+|..+-.... -+.-.-..|+..--+.++-++...+...+.... ...-.+..+....-.+.+|.
T Consensus 102 FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAI 171 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAI 171 (557)
T ss_pred HHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHH
Confidence 67788888877655432 233444566677778888888777777665422 22233444455566788999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcC------CcccHHHHHHHH
Q psy767 250 GILTMMSQAGLEPSAQTYTKLMC-GYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSG------HGEYIDEVSAIV 322 (902)
Q Consensus 250 ~l~~~m~~~g~~pd~~ty~~LI~-a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~------~~~~~~~~~~l~ 322 (902)
+++...... .|+....|.-+. .|.+..-++-+.+++.--.... |+. ++..-+.+|. .....++...+.
T Consensus 172 dvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdS-tiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 172 DVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDS-TIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCc-HHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 999998875 566666666554 5667777777777776543322 111 1111111121 111222222221
Q ss_pred HHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHH
Q psy767 323 CFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKH-----GDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYI 397 (902)
Q Consensus 323 ~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~-----g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A 397 (902)
+ .+-.. | -.+.-.++. .+-+.|++++-.+-.. .+..-..++--|.+.++..+|
T Consensus 247 d----------------N~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~-IPEARlNL~iYyL~q~dVqeA 304 (557)
T KOG3785|consen 247 D----------------NIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH-IPEARLNLIIYYLNQNDVQEA 304 (557)
T ss_pred h----------------ccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh-ChHhhhhheeeecccccHHHH
Confidence 1 11000 0 011112222 2345566555432111 111122244456677788888
Q ss_pred HHHHHHcccCCCCCCCHHHH----HHHHH-HcC---CHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccc
Q psy767 398 DEIISKIQPGVGYSADAANH----IYHLI-NKG---QIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYS 469 (902)
Q Consensus 398 ~~l~~~m~~~~g~~pd~~t~----i~~l~-~~g---~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~ 469 (902)
..+.+.+.. .+|-.+-+ ..++. ..| ...-|.+.|+..-.....-.+. |+
T Consensus 305 ~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI----------------pG---- 361 (557)
T KOG3785|consen 305 ISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI----------------PG---- 361 (557)
T ss_pred HHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc----------------cc----
Confidence 777777755 66665532 11111 111 2344555554433221111110 00
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHH-HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q psy767 470 ADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGG-FLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVL 548 (902)
Q Consensus 470 ~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n-~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~l 548 (902)
-.++-..+.-.-++++.+-+++.+..--..+ +.|| .+.++.+..|. ..+|.++|-+.....++ |..+|.++
T Consensus 362 --RQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd----D~Fn~N~AQAk~atgn-y~eaEelf~~is~~~ik-n~~~Y~s~ 433 (557)
T KOG3785|consen 362 --RQSMASYFFLSFQFDDVLTYLNSIESYFTND----DDFNLNLAQAKLATGN-YVEAEELFIRISGPEIK-NKILYKSM 433 (557)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----chhhhHHHHHHHHhcC-hHHHHHHHhhhcChhhh-hhHHHHHH
Confidence 1123333445557777777777776543222 2233 36777788888 88888888777655443 55666554
Q ss_pred H-HHhcccccccCcchh
Q psy767 549 I-KAHVLKEDYTGAVET 564 (902)
Q Consensus 549 l-~a~~~~~~~~g~~~~ 564 (902)
+ +++ . +.++...
T Consensus 434 LArCy-i---~nkkP~l 446 (557)
T KOG3785|consen 434 LARCY-I---RNKKPQL 446 (557)
T ss_pred HHHHH-H---hcCCchH
Confidence 4 444 5 7788877
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=98.69 E-value=8.8e-06 Score=95.88 Aligned_cols=134 Identities=11% Similarity=0.018 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHHC-----CCchHHHHHHHHHHHCCCCCC-HHHHHHHHHhHHHHHHHH---------HcCCHHHHHH
Q psy767 81 LDISHYNALLRVYLDN-----EHTFSPTDFLAKLESQGIEPN-RVTYQQLISNSKLISKYC---------QDGNIEGATK 145 (902)
Q Consensus 81 pd~~~yn~li~~~~~~-----g~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~~~li~~~~---------~~g~~~~A~~ 145 (902)
.+...|...+.+-... +..++|..+|++..+. .|+ ...|..+ ..+|. ..+++++|..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~L------a~~~~~~~~~g~~~~~~~~~~A~~ 325 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCAL------AECYLSMAQMGIFDKQNAMIKAKE 325 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHH------HHHHHHHHHcCCcccchHHHHHHH
Confidence 4566777777774321 3456899999998854 554 3444444 33332 2345889999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCC
Q psy767 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 146 l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~ 224 (902)
.++...+.+ |-+...|..+-..+...|++++|...|++..+.+ |+ ...|..+...+...|++++|...++...+.+
T Consensus 326 ~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 326 HAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999988876 5677888888888999999999999999998874 54 5577888888999999998888888776654
Q ss_pred C
Q psy767 225 E 225 (902)
Q Consensus 225 ~ 225 (902)
+
T Consensus 403 P 403 (553)
T PRK12370 403 P 403 (553)
T ss_pred C
Confidence 3
No 55
>KOG2003|consensus
Probab=98.68 E-value=9.7e-06 Score=85.71 Aligned_cols=379 Identities=13% Similarity=0.087 Sum_probs=181.2
Q ss_pred HHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCC----------
Q psy767 87 NALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFP---------- 156 (902)
Q Consensus 87 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~---------- 156 (902)
|.+--.+.+.|.++.|..-|+...+. .||-.+--.| +-++..-|+-+...+.|..|..--..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl------~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNL------IICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhh------hhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 33444456778888888888887654 4666554444 55555578888888888887643222
Q ss_pred --CCHHHHHHHH-----HHHHhCC--CHHHHHHHHHHHHHCCCCCCHHH---H----------HHH--------HHHHHH
Q psy767 157 --ISEGVFNALI-----YGHSQAN--DMASAEGILTMMSQAGLEPSAQT---Y----------TKL--------MCGYAK 206 (902)
Q Consensus 157 --p~~~~yn~Li-----~~~~~~g--~~~~A~~l~~~M~~~g~~pd~~t---y----------~~l--------l~a~~~ 206 (902)
|+....|--| +-+-+.. +.++++-.-..+..--+.||-.. | ..| ..-+.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 2333333222 2222211 12222222222222222333210 0 000 123667
Q ss_pred cCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 207 HGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV--SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 207 ~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
.|+++.|.++++-+.+.+...-...-+-+..++.. ..++..|.+.-+...... .-|......--+.-..+|++++|.
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHH
Confidence 88888888888887776555444333333333333 345556665555544321 222222222222334567888888
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCC-CCCHHHHHHHHHHHHHcCCHH
Q psy767 285 RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGL-EPSAQTYTKLMCGYAKHGDMD 363 (902)
Q Consensus 285 ~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~-~p~~~t~~~Li~~y~~~g~~~ 363 (902)
+.|++.......-....+...+.+... +.++++...+ ..-.++ .-+..+.--+...|-...+..
T Consensus 511 ~~ykeal~ndasc~ealfniglt~e~~-~~ldeald~f--------------~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFNIGLTAEAL-GNLDEALDCF--------------LKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred HHHHHHHcCchHHHHHHHHhcccHHHh-cCHHHHHHHH--------------HHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 888876544322222222222222111 1122221111 111111 123444445555566666666
Q ss_pred HHHHHHHHc-CCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH---HHHHHHH-HcCCHHHHHHHHHHH
Q psy767 364 SIRRLLAQN-GSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA---NHIYHLI-NKGQIDAAYRIVNTL 437 (902)
Q Consensus 364 ~A~~~~~~m-~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~---t~i~~l~-~~g~~~~A~~~~~~m 437 (902)
.|++++-+. ..-|..|. .+-|...|-+.|+-..|.+.+-.--+ +-|... .++.+|. ...-+++|..+|++.
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr---yfp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR---YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc---ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666665542 22233333 44555666666666666555444322 333222 2344433 444455666666554
Q ss_pred HhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHH--HHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHH
Q psy767 438 ARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYH--LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRH 515 (902)
Q Consensus 438 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~--~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~ 515 (902)
.- +.|++ .-+.++.+ +-+.|++..|+++++.+..+- |.++....+|++.
T Consensus 653 al---iqp~~-----------------------~kwqlmiasc~rrsgnyqka~d~yk~~hrkf---pedldclkflvri 703 (840)
T KOG2003|consen 653 AL---IQPNQ-----------------------SKWQLMIASCFRRSGNYQKAFDLYKDIHRKF---PEDLDCLKFLVRI 703 (840)
T ss_pred Hh---cCccH-----------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---ccchHHHHHHHHH
Confidence 32 22222 12223322 446677777777776666542 2245566666666
Q ss_pred HHHcCC
Q psy767 516 MVKTNQ 521 (902)
Q Consensus 516 ~~~~g~ 521 (902)
+...|.
T Consensus 704 ~~dlgl 709 (840)
T KOG2003|consen 704 AGDLGL 709 (840)
T ss_pred hccccc
Confidence 666664
No 56
>KOG0547|consensus
Probab=98.67 E-value=1.5e-05 Score=85.68 Aligned_cols=388 Identities=13% Similarity=0.063 Sum_probs=227.4
Q ss_pred HHHhcccCCCCCCcCcccccCccccccCCCCCCCC-HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHH-HHHHHH
Q psy767 48 YLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLD-ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRV-TYQQLI 125 (902)
Q Consensus 48 ~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd-~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll 125 (902)
...+.|-++|.+++|...+....+ +.|| .+.|...-.+|...|+++++.+.-...++ +.|+-+ .+..-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~-------l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RR- 189 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE-------LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRR- 189 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh-------cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHH-
Confidence 345677889999999999999988 7888 88899999999999999999988877774 345422 12222
Q ss_pred HhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH---------HHHCC--CCCCH
Q psy767 126 SNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTM---------MSQAG--LEPSA 194 (902)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~---------M~~~g--~~pd~ 194 (902)
.+++-..|++++|+.= +|-.++..++....-.--+.++++. |.+.+ +-|+.
T Consensus 190 -----A~A~E~lg~~~eal~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~ 251 (606)
T KOG0547|consen 190 -----ASAHEQLGKFDEALFD-------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSA 251 (606)
T ss_pred -----HHHHHhhccHHHHHHh-------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcH
Confidence 3344444555544321 1122222222222111111111111 11111 12222
Q ss_pred HHHHHHHHHHH-----------------------H--cC---ChhHHHHHHHhcc-------cCCCccc-----hhhHHH
Q psy767 195 QTYTKLMCGYA-----------------------K--HG---DMDSIKTKIPSLK-------PQSELFL-----CFSFQL 234 (902)
Q Consensus 195 ~ty~~ll~a~~-----------------------~--~g---~~~~a~~l~~~~~-------~~~~~~~-----~~~~~~ 234 (902)
....+....+. . .+ .+..+...+.+-- ..+.... ..+...
T Consensus 252 ~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 252 TFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred HHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 22222221111 0 00 0111111111000 0000000 011111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCccc
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEY 314 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~ 314 (902)
...++.-+|+.-.|..-|+..+.....++. .|--+-.+|....+.++.+..|.....
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---------------------- 388 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED---------------------- 388 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh----------------------
Confidence 122233378888888888888876433322 266677788888888888888876322
Q ss_pred HHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcc-cHHHHHHHHHHc
Q psy767 315 IDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNG-DYLDIIHALAVS 391 (902)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~-~~~~li~~~~~~ 391 (902)
+.| |..+|..-..++.-.+++++|..=|++- ...|... .|..+..+..+.
T Consensus 389 ---------------------------ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 389 ---------------------------LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred ---------------------------cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 222 4556666677777788899999999873 3333222 266677777788
Q ss_pred CChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcccc
Q psy767 392 GHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSA 470 (902)
Q Consensus 392 g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~ 470 (902)
+++++++..|++.+++..--|..++ |-..+..+++++.|.+.|+.....-...... .++..+
T Consensus 442 ~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-----------------~v~~~p 504 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-----------------IVNAAP 504 (606)
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-----------------cccchh
Confidence 8999999999999887777777777 4677889999999999998877542110000 001111
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy767 471 DAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLT 534 (902)
Q Consensus 471 ~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~ 534 (902)
.+.-.+..+-=.+++..|.++++...+.+ |..-..|-.|...-...|+ .++|+++|++-.
T Consensus 505 lV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D---pkce~A~~tlaq~~lQ~~~-i~eAielFEksa 564 (606)
T KOG0547|consen 505 LVHKALLVLQWKEDINQAENLLRKAIELD---PKCEQAYETLAQFELQRGK-IDEAIELFEKSA 564 (606)
T ss_pred hhhhhHhhhchhhhHHHHHHHHHHHHccC---chHHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 11111222223488999999999988763 3344689999999999999 999999999843
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=1.7e-05 Score=81.18 Aligned_cols=242 Identities=14% Similarity=0.104 Sum_probs=174.8
Q ss_pred CCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHH
Q psy767 56 EPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135 (902)
Q Consensus 56 ~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~ 135 (902)
+...+.|...|.+|.. +-+-+..+--+|-+-|-+.|..+.|+++...+.++ ||...-..++.-..|-.=|.
T Consensus 48 s~Q~dKAvdlF~e~l~------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred hcCcchHHHHHHHHHh------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHH
Confidence 3467889999999987 12222333446777788899999999999988765 34322222222234477788
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCChh
Q psy767 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ----TYTKLMCGYAKHGDMD 211 (902)
Q Consensus 136 ~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~----ty~~ll~a~~~~g~~~ 211 (902)
..|-+|.|+.+|..+.+.+ .--....-.|+..|-...+|++|+++-+++.+.|-.+..+ -|.-|...+....+.+
T Consensus 119 ~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 8999999999999988755 2234567788999999999999999999888876555432 3445666666778888
Q ss_pred HHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 212 SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
.|...+.+..+.+..... ...++..+....|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.++.
T Consensus 198 ~A~~~l~kAlqa~~~cvR-Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 198 RARELLKKALQADKKCVR-ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHHhhCcccee-hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 899988888775544333 3345666677789999999999999988666666778889999999999999999999876
Q ss_pred cCCCCCCHHHHHHHHHH
Q psy767 292 SSLVNGDYLDIIHALAV 308 (902)
Q Consensus 292 ~~~~~p~~~tl~~~l~~ 308 (902)
.....++...++.-+..
T Consensus 277 ~~~~g~~~~l~l~~lie 293 (389)
T COG2956 277 ETNTGADAELMLADLIE 293 (389)
T ss_pred HccCCccHHHHHHHHHH
Confidence 66555554444443333
No 58
>KOG1155|consensus
Probab=98.64 E-value=0.00035 Score=75.10 Aligned_cols=248 Identities=7% Similarity=-0.076 Sum_probs=182.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCC-C-CCHHHHHHHHHHcCCcccHHH
Q psy767 240 LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLV-N-GDYLDIIHALAVSGHGEYIDE 317 (902)
Q Consensus 240 ~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~-~-p~~~tl~~~l~~~~~~~~~~~ 317 (902)
....+.+++.+=.......|++-+...-+-...+.....+++.|+.+|+++.+... . .+..++..++-.-.....+.-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 33457888888888888888777776666666677788899999999999987633 1 245555555544333222221
Q ss_pred -HHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCCh
Q psy767 318 -VSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHG 394 (902)
Q Consensus 318 -~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~ 394 (902)
+..+.. -. +--..|..++..-|+-.++.++|...|++ ++..|.... |+.|.+-|....+.
T Consensus 318 LA~~v~~---------------id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 318 LAQNVSN---------------ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHHHHHH---------------hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence 111110 11 22346777888889999999999999998 455544444 99999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcccc
Q psy767 395 EYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSA 470 (902)
Q Consensus 395 ~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~ 470 (902)
..|.+-++...+ +.|..+. +=.+|.-.+...-|+-+|++...-..-++.
T Consensus 381 ~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR------------------------ 433 (559)
T KOG1155|consen 381 HAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR------------------------ 433 (559)
T ss_pred HHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH------------------------
Confidence 999999999988 8998775 345666788888999999988765333222
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 471 DAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 471 ~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
....+-.+|.+.++.++|.+.|......+... ...+..+...+-+.++ .++|...+++-.+
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte---~~~l~~LakLye~l~d-~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTE---GSALVRLAKLYEELKD-LNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccccc---hHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Confidence 13346667899999999999999998876553 3578899999999999 9999999888544
No 59
>KOG0547|consensus
Probab=98.62 E-value=0.00025 Score=76.54 Aligned_cols=149 Identities=12% Similarity=0.023 Sum_probs=112.9
Q ss_pred HHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHH
Q psy767 356 YAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYR 432 (902)
Q Consensus 356 y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~ 432 (902)
+.-+|+.-.|..-|+. +...+..++ |.-+..+|....+.++....|++..+...-.||.+- --..+.-.+++++|..
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 4557888888888887 555666666 888888999999999999999999884444555542 2334455678888888
Q ss_pred HHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH---HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchH
Q psy767 433 IVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVG 509 (902)
Q Consensus 433 ~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~ 509 (902)
-|++..+ ++|.. ++. +.-+..|.+++++++..|++...+- |..+.+|
T Consensus 416 DF~Kai~---L~pe~------------------------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---P~~~Evy 465 (606)
T KOG0547|consen 416 DFQKAIS---LDPEN------------------------AYAYIQLCCALYRQHKIAESMKTFEEAKKKF---PNCPEVY 465 (606)
T ss_pred HHHHHhh---cChhh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHH
Confidence 8887765 33332 232 3344668999999999999998873 2356899
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 510 GFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 510 n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
|.+...+...++ +++|++.|+...+
T Consensus 466 ~~fAeiLtDqqq-Fd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 466 NLFAEILTDQQQ-FDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhHHh-HHHHHHHHHHHHh
Confidence 999999999999 9999999999655
No 60
>KOG1840|consensus
Probab=98.62 E-value=1.1e-05 Score=90.88 Aligned_cols=60 Identities=3% Similarity=-0.129 Sum_probs=46.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH----HccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy767 474 NHIYHLINKGQIDAAYRIVNTLA----RSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLT 534 (902)
Q Consensus 474 ~li~~~~k~g~~~~A~~l~~~m~----~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~ 534 (902)
.+-..|.+.+++.+|.++|.+.. ..+...+....+|..|...|...|+ .+.|+++.+...
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~-~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN-YEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc-HHHHHHHHHHHH
Confidence 35555888899999999887643 3344444556788999999999999 999999988854
No 61
>KOG1155|consensus
Probab=98.60 E-value=5.2e-05 Score=81.23 Aligned_cols=255 Identities=8% Similarity=-0.008 Sum_probs=179.1
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCC
Q psy767 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGL--EPSAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~--~pd~~ty~~ll~a~~~~g~ 209 (902)
.++-.....+++..=.+.....|++-+...-+-...+.-...+++.|+.+|++..+... --|..||+.++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444556777777777777778654444434444445566789999999999988742 1266788877654433322
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
+. .+..-...-....+.+.-++...+...++.+.|...|+...+.+ +.....|+.|-+-|....+...|.+-|+.
T Consensus 315 Ls----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 315 LS----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 22 12222112222334455666777888899999999999999875 55677899999999999999999999986
Q ss_pred hccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q psy767 290 SGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRL 368 (902)
Q Consensus 290 m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~ 368 (902)
.. .+.| |-..|-.|..+|.-.+...-|+-.
T Consensus 390 Av-------------------------------------------------di~p~DyRAWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 390 AV-------------------------------------------------DINPRDYRAWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred HH-------------------------------------------------hcCchhHHHHhhhhHHHHHhcchHHHHHH
Confidence 32 1233 678899999999999999999999
Q ss_pred HHH-cCCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhc
Q psy767 369 LAQ-NGSSLVNG-DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 369 ~~~-m~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
|++ ....|..+ -|.+|...|.+.++.++|.+.|.+........-+... +-..+-+.++.++|-..|++..+.
T Consensus 421 fqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 421 FQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 988 44444444 3999999999999999999999998772223222222 445556888999999988887764
No 62
>KOG1840|consensus
Probab=98.59 E-value=8e-06 Score=92.10 Aligned_cols=246 Identities=15% Similarity=0.131 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHC-----C-CCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh-----
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQ-----G-IEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD----- 152 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~----- 152 (902)
.+...+...|...|+++.|..++++..+. | ..|...+ + .+.+...|...+++++|..+|+.+..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~---~--l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVAS---M--LNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHH---H--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 44555888999999999999999986653 3 1222222 2 12337788889999999999998753
Q ss_pred --CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCC-CCHH-HHHHHHHHHHHcCChhHHHHHHHhcccC
Q psy767 153 --KTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA-----GLE-PSAQ-TYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 153 --~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~-----g~~-pd~~-ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 223 (902)
...+--..+++.|-.+|.+.|++++|...++...+. |.. |... .++.+...|+..+.+++|..++..
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~---- 350 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK---- 350 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH----
Confidence 222233466888888999999999998888766432 222 2222 455667778888888888877763
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHH
Q psy767 224 SELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDII 303 (902)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~ 303 (902)
+.+++.........--..+|+.|-..|...|++++|.++|++....
T Consensus 351 ------------------------al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~---------- 396 (508)
T KOG1840|consen 351 ------------------------ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI---------- 396 (508)
T ss_pred ------------------------HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH----------
Confidence 3334442221111123568999999999999999999999974221
Q ss_pred HHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcC--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH----c-CCC
Q psy767 304 HALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAG--LEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQ----N-GSS 375 (902)
Q Consensus 304 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g--~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~----m-~~~ 375 (902)
..+.+ ..+ ....++-|-..|.+.+++++|.++|.+ | ...
T Consensus 397 ---------------------------------~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 397 ---------------------------------LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred ---------------------------------HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 11111 122 234566666777777777777777765 1 111
Q ss_pred CCcc----cHHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 376 LVNG----DYLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 376 ~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
+..+ +|..|...|...|+++.|.++.+...
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1121 25566666667777766666665543
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=98.54 E-value=7.2e-06 Score=96.60 Aligned_cols=213 Identities=11% Similarity=0.036 Sum_probs=137.7
Q ss_pred CCCCcCcccccCccccccCCCCCCCCH-HHHHHHHHHHHH---------CCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 57 PSLGPGNLPCEDPFSVHTGELDVPLDI-SHYNALLRVYLD---------NEHTFSPTDFLAKLESQGIEPNRVTYQQLIS 126 (902)
Q Consensus 57 g~~~~A~~~f~~~~~~~~~~~g~~pd~-~~yn~li~~~~~---------~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~ 126 (902)
+++++|...|+.... ..|+. ..|..+...|.. .+++++|...+++..+.... +...+..+
T Consensus 275 ~~~~~A~~~~~~Al~-------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~l-- 344 (553)
T PRK12370 275 YSLQQALKLLTQCVN-------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLL-- 344 (553)
T ss_pred HHHHHHHHHHHHHHh-------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHH--
Confidence 345677777777776 45544 456555544432 24478999999999875422 56677777
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q psy767 127 NSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ-TYTKLMCGYA 205 (902)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~ll~a~~ 205 (902)
...+...|++++|...|++..+.+ |.+...|..+...|...|++++|+..|++..+.. |+.. .+..++..+.
T Consensus 345 ----g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 345 ----GLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITY 417 (553)
T ss_pred ----HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 778889999999999999998876 5667889999999999999999999999999874 4432 3334444566
Q ss_pred HcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy767 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRR 285 (902)
Q Consensus 206 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~ 285 (902)
..|++++|...+++......+.....+..+..++...|+.++|...+.++.... +.+...++.+...|+..| ++|..
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~ 494 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALP 494 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHH
Confidence 678888888877776544322233334444445555666666666655543321 112223333444444444 24444
Q ss_pred HHHH
Q psy767 286 LLAQ 289 (902)
Q Consensus 286 lf~~ 289 (902)
.++.
T Consensus 495 ~l~~ 498 (553)
T PRK12370 495 TIRE 498 (553)
T ss_pred HHHH
Confidence 4443
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.54 E-value=3.9e-05 Score=87.69 Aligned_cols=310 Identities=13% Similarity=0.071 Sum_probs=179.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-Hc--
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA-KH-- 207 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~-~~-- 207 (902)
...+...|++++|++.++.-.. .+.............+.+.|+.++|..+|..+.+. -|+...|...+..+. -.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence 4566889999999999977433 34334455667778999999999999999999998 477777766555554 22
Q ss_pred ---CChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 208 ---GDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 208 ---g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
.+.+....+++++...-+.........+.. +....--..+...+..+..+|+++ +|+.|-..|....+..-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~-~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF-LEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhccc-CCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 234555666666654332211111100000 000000112333334444444322 1222222232222222222
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHH--HHHHHHHHHcCCH
Q psy767 285 RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTY--TKLMCGYAKHGDM 362 (902)
Q Consensus 285 ~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~--~~Li~~y~~~g~~ 362 (902)
+++....... ..+....... ....-.|....| .-+...|-..|++
T Consensus 164 ~l~~~~~~~l-------------------------------~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~ 210 (517)
T PF12569_consen 164 SLVEEYVNSL-------------------------------ESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDY 210 (517)
T ss_pred HHHHHHHHhh-------------------------------cccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCH
Confidence 2222211100 0000000000 011234555444 5557788999999
Q ss_pred HHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHH
Q psy767 363 DSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNT 436 (902)
Q Consensus 363 ~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~ 436 (902)
++|+.++++ +...|..+. |..-...|.+.|++.+|.+.++..+. +.+...- ....+.+.|++++|.+++..
T Consensus 211 ~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 211 EKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999997 777777766 78888999999999999999999987 5553331 45666799999999999998
Q ss_pred HHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy767 437 LARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARS 498 (902)
Q Consensus 437 m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~ 498 (902)
..+... +|.. .+++.=+-| .....-.+|.+.|++..|++.|..+...
T Consensus 288 Ftr~~~-~~~~-----~L~~mQc~W---------f~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 288 FTREDV-DPLS-----NLNDMQCMW---------FETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred hcCCCC-Cccc-----CHHHHHHHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 877643 2111 111110000 0112445588999999999888877765
No 65
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1e-07 Score=65.26 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy767 153 KTFPISEGVFNALIYGHSQANDMASAEGILTMMS 186 (902)
Q Consensus 153 ~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~ 186 (902)
+|++||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4778888888888888888888888888888874
No 66
>KOG2047|consensus
Probab=98.50 E-value=0.002 Score=72.00 Aligned_cols=423 Identities=9% Similarity=0.044 Sum_probs=238.7
Q ss_pred hcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHH
Q psy767 51 SKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKL 130 (902)
Q Consensus 51 ~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~l 130 (902)
....++|++..-++.|+..+. .+.+......|...|......+-++-+..++++.++- .|.. -+--
T Consensus 110 q~l~~Q~~iT~tR~tfdrALr----aLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eey------ 175 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALR----ALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEY------ 175 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHH----hCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHH------
Confidence 344677888888888888887 3444444556999999999999999999999998864 3433 3344
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC------CCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHCCCCCCH--HHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKT------FPISEGVFNALIYGHSQANDM---ASAEGILTMMSQAGLEPSA--QTYTK 199 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~------~~p~~~~yn~Li~~~~~~g~~---~~A~~l~~~M~~~g~~pd~--~ty~~ 199 (902)
|..+++.+++++|-+.+......+ .+.+-..|+-+-...++.-+. -...++++.+... -+|. ..|.+
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 888899999999999988875322 245556677766666665433 2333444544433 4554 47888
Q ss_pred HHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhc----------------C------CHHHHHHHHHHHHH
Q psy767 200 LMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS----------------S------DMASAEGILTMMSQ 257 (902)
Q Consensus 200 ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------g------~~~~A~~l~~~m~~ 257 (902)
|...|.+.|+++.|..++++....-..... +..+...|... + +++-...-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v~tvrD--Ft~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTVMTVRD--FTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhheehhh--HHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 999999999999999988887664333222 22222222211 1 11222222332222
Q ss_pred CC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhh
Q psy767 258 AG-----------LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVN 326 (902)
Q Consensus 258 ~g-----------~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~ 326 (902)
.+ -+.++..|..-+.. ..|+..+-...|.+....
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~--------------------------------- 376 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT--------------------------------- 376 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc---------------------------------
Confidence 21 01112222221111 122233333333321111
Q ss_pred hhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcc------cHHHHHHHHHHcCChHHHHHH
Q psy767 327 ICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNG------DYLDIIHALAVSGHGEYIDEI 400 (902)
Q Consensus 327 ~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~------~~~~li~~~~~~g~~~~A~~l 400 (902)
+.. ... +-.-...|..+.+.|-..|+++.|..+|++-...+-.. .|-.-...=.++.+++.|+++
T Consensus 377 ----vdP---~ka--~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 377 ----VDP---KKA--VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred ----cCc---ccC--CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 000 000 11123568888999999999999999999843322111 144444555567778888888
Q ss_pred HHHcccCCCCCCC----------HHH------HHHHHH----HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhh
Q psy767 401 ISKIQPGVGYSAD----------AAN------HIYHLI----NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVK 460 (902)
Q Consensus 401 ~~~m~~~~g~~pd----------~~t------~i~~l~----~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~ 460 (902)
.+.... ..-.|. ... +.+.|. ..|-++....+++++.......|..
T Consensus 448 m~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi------------- 513 (835)
T KOG2047|consen 448 MRRATH-VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI------------- 513 (835)
T ss_pred HHhhhc-CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH-------------
Confidence 887654 222211 111 112222 5566777777777776643333221
Q ss_pred cCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHH--cCCCHHHHHHHHHHHHHCCC
Q psy767 461 TNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVK--TNQPIDKVLAVCHRLTDENL 538 (902)
Q Consensus 461 ~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~--~g~~~~~A~~l~~~m~~~g~ 538 (902)
+.|.-.-+....-++++.++++.=...- ..|.....||..+.-+.+ .|..++.|..+|++..+ |+
T Consensus 514 -----------i~NyAmfLEeh~yfeesFk~YErgI~LF-k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 514 -----------IINYAMFLEEHKYFEESFKAYERGISLF-KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred -----------HHHHHHHHHhhHHHHHHHHHHHcCCccC-CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 1121111334456778877776533221 122233567765555443 34458999999999888 78
Q ss_pred CCChhhHHHHHHHhcccccccCcchh
Q psy767 539 HPRAFNLAVLIKAHVLKEDYTGAVET 564 (902)
Q Consensus 539 ~Pd~~t~~~ll~a~~~~~~~~g~~~~ 564 (902)
.|...-+.-|+=|- +.+ +.|....
T Consensus 581 pp~~aKtiyLlYA~-lEE-e~GLar~ 604 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAK-LEE-EHGLARH 604 (835)
T ss_pred CHHHHHHHHHHHHH-HHH-HhhHHHH
Confidence 77766665555222 222 4455555
No 67
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2.1e-07 Score=63.71 Aligned_cols=34 Identities=35% Similarity=0.601 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 258 AGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 258 ~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
+|+.||..|||+||++||+.|++++|+++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999984
No 68
>KOG1915|consensus
Probab=98.45 E-value=0.00063 Score=73.15 Aligned_cols=350 Identities=11% Similarity=0.065 Sum_probs=241.5
Q ss_pred cCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHH
Q psy767 54 CSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISK 133 (902)
Q Consensus 54 ~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~ 133 (902)
-..|++..|+.+|+.-.. ..|+...|++.|+.-.+-...+.|..+++...- +.|+..+|--- ...
T Consensus 152 E~LgNi~gaRqiferW~~-------w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wiky------arF 216 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME-------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKY------ARF 216 (677)
T ss_pred HHhcccHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHH------HHH
Confidence 445889999999998876 789999999999999999999999999999884 46999999777 777
Q ss_pred HHHcCCHHHHHHHHHHhhhC-C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcC
Q psy767 134 YCQDGNIEGATKILEFMRDK-T-FPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA---QTYTKLMCGYAKHG 208 (902)
Q Consensus 134 ~~~~g~~~~A~~l~~~m~~~-~-~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~---~ty~~ll~a~~~~g 208 (902)
=-++|.+..|.++|+...+. | -.-+...|++...-=.++..++.|.-+|.-.... -|.. ..|......=-+.|
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhc
Confidence 78899999999999987653 1 0112234444444445667888999999887765 3332 34555544445556
Q ss_pred ChhHHHHH--------HHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH------
Q psy767 209 DMDSIKTK--------IPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSA--QTYTKLMC------ 272 (902)
Q Consensus 209 ~~~~a~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~ty~~LI~------ 272 (902)
+....... ++.+.. ..+.+..++.-++.+....|+.+...++|+..... ++|-. .-|..-|.
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~-~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVS-KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHH-hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHH
Confidence 65554432 222222 33445566777777888899999999999999865 34421 12332222
Q ss_pred --HHHHcCCHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcC----CcccHHHHHHHHHHhhhhhcccccchHHhcCCCCC
Q psy767 273 --GYAKHGDMDSVRRLLAQSGSSLVNGD-YLDIIHALAVSG----HGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS 345 (902)
Q Consensus 273 --a~~~~g~~~~A~~lf~~m~~~~~~p~-~~tl~~~l~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~ 345 (902)
.=....+++.+.++|+.... +.|. ..|+.......+ +...+..+..++ -..-|.-|-
T Consensus 373 lyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiL--------------G~AIG~cPK 436 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKIL--------------GNAIGKCPK 436 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHH--------------HHHhccCCc
Confidence 22356788899999988766 3332 233333222211 222333444432 235688999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH-HHHHHH-
Q psy767 346 AQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNG-DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA-NHIYHL- 421 (902)
Q Consensus 346 ~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~i~~l- 421 (902)
..+|-..|..-.+.+++|.+..++++. ...|... .|......-...|+++.|..+|.....+..+ |-. -+..+|
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l--dmpellwkaYI 514 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL--DMPELLWKAYI 514 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc--ccHHHHHHHhh
Confidence 999999999999999999999999984 3333332 2766777777889999999999998873222 222 234444
Q ss_pred ---HHcCCHHHHHHHHHHHHhc
Q psy767 422 ---INKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 422 ---~~~g~~~~A~~~~~~m~~~ 440 (902)
...|..+.|..+++.+...
T Consensus 515 dFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHh
Confidence 4899999999999998875
No 69
>KOG1156|consensus
Probab=98.45 E-value=0.0018 Score=72.63 Aligned_cols=421 Identities=10% Similarity=0.025 Sum_probs=256.0
Q ss_pred cCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHH
Q psy767 54 CSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISK 133 (902)
Q Consensus 54 ~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~ 133 (902)
+..|+.++|-........ +-..+.+.|..+--.+-...++++|+..|+.....+ +-|...|.-+ --.
T Consensus 52 ~~lg~~~ea~~~vr~glr------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDl------slL 118 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLR------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDL------SLL 118 (700)
T ss_pred hcccchHHHHHHHHHHhc------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHH------HHH
Confidence 445666666555444443 333467889998888888999999999999988654 2256666666 444
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHH
Q psy767 134 YCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG-LEPSAQTYTKLM------CGYAK 206 (902)
Q Consensus 134 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~ty~~ll------~a~~~ 206 (902)
-++.|+++..........+.. +.....|..+..++.-.|+...|..++++..+.- -.|+...|.-.. .....
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E 197 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 567788888887777776643 3445789999999999999999999999998764 246666554332 34567
Q ss_pred cCChhHHHHHHHhcccCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHH
Q psy767 207 HGDMDSIKTKIPSLKPQSELFLCF-SFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMC-GYAKHGDMDSVR 284 (902)
Q Consensus 207 ~g~~~~a~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~-a~~~~g~~~~A~ 284 (902)
.|..+.|.+.+...... ..+.. .-.+-..++.+.+++++|..++..+..+ .||-.-|.-.+. ++.+--+.-+++
T Consensus 198 ~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~l 273 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEAL 273 (700)
T ss_pred cccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHH
Confidence 78888888877665442 12222 2234455667799999999999999987 577777766555 444344444444
Q ss_pred -HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q psy767 285 -RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMD 363 (902)
Q Consensus 285 -~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~ 363 (902)
.+|....+.........-+.. ......+..+.+.... +.+.+.|+++-.....+|-.-=-++.=++
T Consensus 274 k~ly~~ls~~y~r~e~p~Rlpl-svl~~eel~~~vdkyL------------~~~l~Kg~p~vf~dl~SLyk~p~k~~~le 340 (700)
T KOG1156|consen 274 KALYAILSEKYPRHECPRRLPL-SVLNGEELKEIVDKYL------------RPLLSKGVPSVFKDLRSLYKDPEKVAFLE 340 (700)
T ss_pred HHHHHHHhhcCcccccchhccH-HHhCcchhHHHHHHHH------------HHHhhcCCCchhhhhHHHHhchhHhHHHH
Confidence 667665443222111111111 1111122222222211 24667777654333333322111111111
Q ss_pred H-HHHHHHHcCCC----------CCccc---HH--HHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHH----HHHHH
Q psy767 364 S-IRRLLAQNGSS----------LVNGD---YL--DIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHI----YHLIN 423 (902)
Q Consensus 364 ~-A~~~~~~m~~~----------~~~~~---~~--~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i----~~l~~ 423 (902)
+ +..+...+... ...|+ |. .++..+-..|+++.|.+.++.... -+|+.+-+. ..+.+
T Consensus 341 ~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH 417 (700)
T KOG1156|consen 341 KLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKH 417 (700)
T ss_pred HHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHh
Confidence 1 12222222111 01222 44 577888899999999999999977 788877643 56789
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchH-HHHHHHHhcCChHHHHHHHHHHHHccCCC
Q psy767 424 KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAA-NHIYHLINKGQIDAAYRIVNTLARSANIN 502 (902)
Q Consensus 424 ~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~li~~~~k~g~~~~A~~l~~~m~~~~~~~ 502 (902)
.|.+++|..++++..+-.. |+. ... -+..-..+..+.++|.++.......+...
T Consensus 418 ~G~l~eAa~~l~ea~elD~---------------------aDR----~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 418 AGLLDEAAAWLDEAQELDT---------------------ADR----AINSKCAKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred cCChHHHHHHHHHHHhccc---------------------hhH----HHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence 9999999999998876411 000 011 13444678899999999998888776311
Q ss_pred CCcc----chHHH--HHHHHHHcCCCHHHHHHHHHHHH
Q psy767 503 GEQL----PVGGF--LVRHMVKTNQPIDKVLAVCHRLT 534 (902)
Q Consensus 503 ~~~~----~~~n~--li~~~~~~g~~~~~A~~l~~~m~ 534 (902)
...+ .+|-. =..+|.+.|+ +..|++=|....
T Consensus 473 ~~~L~~mqcmWf~~E~g~ay~r~~k-~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLEDGEAYLRQNK-LGLALKKFHEIE 509 (700)
T ss_pred hhhHHHhhhHHHhHhhhHHHHHHHH-HHHHHHHHhhHH
Confidence 1111 12211 2456777777 777777666653
No 70
>KOG2376|consensus
Probab=98.42 E-value=0.00045 Score=76.48 Aligned_cols=447 Identities=11% Similarity=0.054 Sum_probs=244.2
Q ss_pred HhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHhH
Q psy767 50 NSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISNS 128 (902)
Q Consensus 50 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~ 128 (902)
++.+...|++++|......+.. +.+-|...+-+=+-++++.+++++|+.+.+.-. +... +.+. +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~------~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~--~~~~~~~~~---f---- 83 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILS------IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG--ALLVINSFF---F---- 83 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHh------cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc--hhhhcchhh---H----
Confidence 6777888888888888888887 445566677777888889999999986654422 1111 1111 2
Q ss_pred HHHHHHH--HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q psy767 129 KLISKYC--QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ--TYTKLMCGY 204 (902)
Q Consensus 129 ~li~~~~--~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~--ty~~ll~a~ 204 (902)
=.+|| +.+..++|+..++..... |..+-..=...+-+.|++++|+++|+.+.+.+.. |.. .-..++.+-
T Consensus 84 --EKAYc~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 84 --EKAYCEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVA 156 (652)
T ss_pred --HHHHHHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 34454 788999999988832221 2234555556778889999999999999877532 221 111222211
Q ss_pred HHcCChhHHHHHHHhcccCCCccchhhHHHH-H--HHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHHH-H
Q psy767 205 AKHGDMDSIKTKIPSLKPQSELFLCFSFQLT-N--LLILVSSDMASAEGILTMMSQAG-------------LEPSAQT-Y 267 (902)
Q Consensus 205 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~g~~~~A~~l~~~m~~~g-------------~~pd~~t-y 267 (902)
.. -.+. +.+.... .+ ..+|..+ + ..+...|++.+|++++....+-+ +.-...+ -
T Consensus 157 a~----l~~~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir 227 (652)
T KOG2376|consen 157 AA----LQVQ-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR 227 (652)
T ss_pred Hh----hhHH-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 11 1111 2222222 22 2233222 2 22344799999999998873211 1111111 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCC--CCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhccccc-chHHhcCCCC
Q psy767 268 TKLMCGYAKHGDMDSVRRLLAQSGSSLV--NGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEG-PMMSQAGLEP 344 (902)
Q Consensus 268 ~~LI~a~~~~g~~~~A~~lf~~m~~~~~--~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~m~~~g~~p 344 (902)
--|...+-..|+-++|..+|........ .|....+..-+.+......+-....+..+-..++.+.+. ..+......-
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2244566788999999999998776543 233333333333333222221111111111111111000 0011111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHc--CChHHHHHHHHHcccCCCCCCCH---HH--H
Q psy767 345 SAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVS--GHGEYIDEIISKIQPGVGYSADA---AN--H 417 (902)
Q Consensus 345 ~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~~g~~pd~---~t--~ 417 (902)
...--++++..|. +..+.+.++-...........+..++..+.+. ..+..|.+++..... -.|+. +. .
T Consensus 308 ~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~---~~p~~s~~v~L~~ 382 (652)
T KOG2376|consen 308 AIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD---GHPEKSKVVLLLR 382 (652)
T ss_pred HHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc---cCCchhHHHHHHH
Confidence 1222233333333 34455555555443322222244455444322 246777777777765 34544 22 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHH-HHHhcCChHHHHHHHHHHH
Q psy767 418 IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIY-HLINKGQIDAAYRIVNTLA 496 (902)
Q Consensus 418 i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~-~~~k~g~~~~A~~l~~~m~ 496 (902)
+......|+++.|.+++...... .+...+..+|.|.+...|. .+.+.+.-+.|..++.+..
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~------------------~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLES------------------WKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhh------------------hhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 44456999999999999855421 1223455677777777544 4788888777887777655
Q ss_pred HccCCCC----CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q psy767 497 RSANING----EQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAH 552 (902)
Q Consensus 497 ~~~~~~~----~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~ 552 (902)
..-...- .....+.-+...-.+.|. .++|..+++++.+. -.+|..+...++.++
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~-~~ea~s~leel~k~-n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGN-EEEASSLLEELVKF-NPNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCc-hHHHHHHHHHHHHh-CCchHHHHHHHHHHH
Confidence 4321111 111223333444446788 89999999999874 357888888888887
No 71
>KOG3785|consensus
Probab=98.40 E-value=0.0023 Score=66.43 Aligned_cols=505 Identities=12% Similarity=0.091 Sum_probs=262.9
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
.-+....++..|..+++.-...+-.-...+---+..++.+.|++++|+..|.-+.+.. .|+...+..|...+--.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3345567888888888776543311111222234456778899999999998887754 567777777777777778888
Q ss_pred HHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 212 SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
+|..+-....+. +.....++.+.-+.++-++...+...+...
T Consensus 109 eA~~~~~ka~k~-----pL~~RLlfhlahklndEk~~~~fh~~LqD~--------------------------------- 150 (557)
T KOG3785|consen 109 EAKSIAEKAPKT-----PLCIRLLFHLAHKLNDEKRILTFHSSLQDT--------------------------------- 150 (557)
T ss_pred HHHHHHhhCCCC-----hHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---------------------------------
Confidence 888776654331 111222222222233333333332222210
Q ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 292 SSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 292 ~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~ 371 (902)
..--.+|.......-.+.+|++++++
T Consensus 151 ------------------------------------------------------~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 151 ------------------------------------------------------LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred ------------------------------------------------------HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 00011122222223345666666666
Q ss_pred cCC-CCCcccHHH-HHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHH--HHHH--H--HcCCHHHHHHHHHHHHhccCC
Q psy767 372 NGS-SLVNGDYLD-IIHALAVSGHGEYIDEIISKIQPGVGYSADAANH--IYHL--I--NKGQIDAAYRIVNTLARSANI 443 (902)
Q Consensus 372 m~~-~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~--i~~l--~--~~g~~~~A~~~~~~m~~~~~i 443 (902)
.-. .+.-...|. +.-.|.+..-++.+.++++--.+ -.||+.-. +.+| . -.|+..++ -.+.+... +
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~---q~pdStiA~NLkacn~fRl~ngr~ae~--E~k~ladN--~ 249 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR---QFPDSTIAKNLKACNLFRLINGRTAED--EKKELADN--I 249 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH---hCCCcHHHHHHHHHHHhhhhccchhHH--HHHHHHhc--c
Confidence 322 222222333 33445567777777777777666 33444321 2222 1 22333222 22222221 0
Q ss_pred CCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhc-----CChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHH
Q psy767 444 NGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINK-----GQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVK 518 (902)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~-----g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~ 518 (902)
+. -|..+..++|. .+-+.|++++-.+... .+.+--.|+-.|.+
T Consensus 250 ~~--------------------------~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~------IPEARlNL~iYyL~ 297 (557)
T KOG3785|consen 250 DQ--------------------------EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH------IPEARLNLIIYYLN 297 (557)
T ss_pred cc--------------------------cchhHHHHHHcCeEEEeCCccHHHhchHHHhh------ChHhhhhheeeecc
Confidence 00 01122222222 3345555555443332 12233344455666
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhh
Q psy767 519 TNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRIT 598 (902)
Q Consensus 519 ~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~ 598 (902)
.++ +.+|+.+++++.- ..|-......+..+. +- -+.|..+. +.. |.. .|+..-..+ ...
T Consensus 298 q~d-VqeA~~L~Kdl~P--ttP~EyilKgvv~aa-lG-Qe~gSreH----lKi--Aqq----ffqlVG~Sa---~ec--- 356 (557)
T KOG3785|consen 298 QND-VQEAISLCKDLDP--TTPYEYILKGVVFAA-LG-QETGSREH----LKI--AQQ----FFQLVGESA---LEC--- 356 (557)
T ss_pred ccc-HHHHHHHHhhcCC--CChHHHHHHHHHHHH-hh-hhcCcHHH----HHH--HHH----HHHHhcccc---ccc---
Confidence 666 7777777776532 233333333333222 10 02222111 111 222 444443332 111
Q ss_pred hcccccccchhhhHHHHHhhhHHHHHHHHHHHHHHhCCCCChHHHHHhhhccCC-CCCCChHHHHHHHHhcCCCCccchH
Q psy767 599 DLSTSIHGEVNSLYDLMLSFLDAEVLRILQVAEAEFGVGSNTETLRDYVLPVLS-PPNQVSGEVFSQLRSVGVTIGSITS 677 (902)
Q Consensus 599 ~~~~~i~p~~~~~~~li~~~~~~~al~ll~~m~~~~g~~P~~~t~~~lv~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~ 677 (902)
-.+.+-...-.++.....+++++..++.+ +..=..-|...|+ +..+.+. +.....++++-.+.+..+.....+.
T Consensus 357 ---DTIpGRQsmAs~fFL~~qFddVl~YlnSi-~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~ 431 (557)
T KOG3785|consen 357 ---DTIPGRQSMASYFFLSFQFDDVLTYLNSI-ESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYK 431 (557)
T ss_pred ---ccccchHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHH
Confidence 11111133333334455589999999999 7776666665554 4444444 6666677777777666666666665
Q ss_pred HHHHHH-HHhcCHHHHHHHHHHhhhhhchhhccchhhhhhhccCCchhHHHHHHHHHhhhhcCCC-cchhhhhhhhhhhh
Q psy767 678 AYVVHM-LRQHNLKEAALLAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLVTVVRAVCENWEKGEE-GEKEEEGEEKTAGQ 755 (902)
Q Consensus 678 ~~l~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 755 (902)
..+-.+ .+.+.++-|+++.-++.+..+.+.+.+.++.-+-+.+.+=...+-|+.+- +-.| -|+|+ |
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE----~lDP~pEnWe-G------- 499 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE----ILDPTPENWE-G------- 499 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----ccCCCccccC-C-------
Confidence 555555 79999999999999999999999999999988778888777777777664 3223 23332 2
Q ss_pred hhhhhhhHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhccccccccchHHHHhhh
Q psy767 756 LIDMDRIFAGNVLLDIYKATRQDPNVVSHLEQLLNAFVEHAIPISAFSSDYIQNGL 811 (902)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (902)
.+.+-.-++-.++..- +++--++.++.+++-+...+=+=-++..+.+++..
T Consensus 500 ----KRGACaG~f~~l~~~~-~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa 550 (557)
T KOG3785|consen 500 ----KRGACAGLFRQLANHK-TDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWA 550 (557)
T ss_pred ----ccchHHHHHHHHHcCC-CCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3334444555555522 22223566777887777765444444444444443
No 72
>KOG3617|consensus
Probab=98.39 E-value=0.0029 Score=72.25 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=53.0
Q ss_pred HHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 205 AKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 205 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
-..|+.+.|+.++...+. |..+..+.|..|+.++|-++-++ .-|....-.|...|-..|++.+|.
T Consensus 923 ES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 923 ESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAV 987 (1416)
T ss_pred hcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHH
Confidence 344455555544443322 33334444445555555555544 335566667788888888888888
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHH
Q psy767 285 RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAI 321 (902)
Q Consensus 285 ~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l 321 (902)
.+|.+. .++..++.-|...+.-++...+
T Consensus 988 ~FfTrA---------qafsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 988 KFFTRA---------QAFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred HHHHHH---------HHHHHHHHHHHhcCHHHHHHHH
Confidence 888763 3455555555555555554443
No 73
>KOG1129|consensus
Probab=98.37 E-value=1.5e-05 Score=81.45 Aligned_cols=223 Identities=10% Similarity=0.009 Sum_probs=164.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhc
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (902)
+-|-++|.+.|.+.+|.+.|+.-.+. .|-..||..|-++|.+..+...|+.++.+-...- +.+.....-...++...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 67778889999999999999888776 5677788888899999999998888887765532 22222223344455667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHH
Q psy767 243 SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIV 322 (902)
Q Consensus 243 g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~ 322 (902)
++.++|.++|+...+.. +.++....++..+|.-.++++.|+..|+++.+-|+.
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-------------------------- 356 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-------------------------- 356 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--------------------------
Confidence 89999999999888764 566777778888999999999999999985443332
Q ss_pred HHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----cCCCCCccc-HHHHHHHHHHcCChHHH
Q psy767 323 CFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ----NGSSLVNGD-YLDIIHALAVSGHGEYI 397 (902)
Q Consensus 323 ~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~----m~~~~~~~~-~~~li~~~~~~g~~~~A 397 (902)
+...|+.+--+|.-.+++|-++.-|.+ +...+...+ |..+.......|+...|
T Consensus 357 ----------------------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 357 ----------------------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred ----------------------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHH
Confidence 556677777777778888888887776 332222323 77777788888999999
Q ss_pred HHHHHHcccCCCCCCCHHHH---HHHH-HHcCCHHHHHHHHHHHHhc
Q psy767 398 DEIISKIQPGVGYSADAANH---IYHL-INKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 398 ~~l~~~m~~~~g~~pd~~t~---i~~l-~~~g~~~~A~~~~~~m~~~ 440 (902)
.+.|+.... -.|++..- +..+ .+.|++++|..+++.....
T Consensus 415 ~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 415 KRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999998876 45655543 2333 3889999999999887654
No 74
>KOG1156|consensus
Probab=98.37 E-value=0.001 Score=74.47 Aligned_cols=361 Identities=11% Similarity=0.038 Sum_probs=205.2
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQG-IEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
....|..+..++.-.|++..|..+.++..+.- -.|+...|.-...----.....+.|.++.|++.+..-... +.-...
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 44668888888888999999999999988764 2456555544311000123445778899998888664332 221222
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCChhHHH-HHHHhcccCCCccchhhHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA-KHGDMDSIK-TKIPSLKPQSELFLCFSFQLTNLL 238 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~-~~g~~~~a~-~l~~~~~~~~~~~~~~~~~~~~~~ 238 (902)
.-.+-...+.+.+++++|..+|..+... .||..-|...+..+. +-.+.-++. .+|....+.-.......... ..+
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp-lsv 297 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP-LSV 297 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc-HHH
Confidence 3345567788899999999999999988 688887776555444 333333333 66665554322221111111 111
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHH
Q psy767 239 ILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEV 318 (902)
Q Consensus 239 ~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~ 318 (902)
+....-.+....++..+.+.|+++-.....+|-. .-...+ +.+++. ..+.+.+..++.....
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~----~le~Lv--------t~y~~~L~~~~~f~~~--- 359 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVA----FLEKLV--------TSYQHSLSGTGMFNFL--- 359 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhH----HHHHHH--------HHHHhhcccccCCCcc---
Confidence 1112223344455556666665543332222211 111000 111100 0000000001000000
Q ss_pred HHHHHHhhhhhcccccchHHhcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCCh
Q psy767 319 SAIVCFVNICFHWLEGPMMSQAGLEPSAQTYT--KLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHG 394 (902)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~--~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~ 394 (902)
-...--.|....|+ .++..|-+.|+++.|..+++. +...|+.+. |..=...+...|..
T Consensus 360 ------------------D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l 421 (700)
T KOG1156|consen 360 ------------------DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLL 421 (700)
T ss_pred ------------------cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCCh
Confidence 00111256666555 457889999999999999987 454444443 55666888999999
Q ss_pred HHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccc
Q psy767 395 EYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSAD 471 (902)
Q Consensus 395 ~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 471 (902)
++|...+++..+. =.||.+- ...-+.+.+++++|.++.....+..- .....+++.=+-| .
T Consensus 422 ~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~------~~~~~L~~mqcmW---------f 484 (700)
T KOG1156|consen 422 DEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF------GAVNNLAEMQCMW---------F 484 (700)
T ss_pred HHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc------chhhhHHHhhhHH---------H
Confidence 9999999999872 2344331 33334599999999999998887632 1111122211111 0
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHcc
Q psy767 472 AANHIYHLINKGQIDAAYRIVNTLARSA 499 (902)
Q Consensus 472 ~~~li~~~~k~g~~~~A~~l~~~m~~~~ 499 (902)
....-.+|.+.|++.+|++-|..+...-
T Consensus 485 ~~E~g~ay~r~~k~g~ALKkfh~i~k~~ 512 (700)
T KOG1156|consen 485 QLEDGEAYLRQNKLGLALKKFHEIEKHY 512 (700)
T ss_pred hHhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 1113345889999999999998887763
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.33 E-value=0.0014 Score=75.18 Aligned_cols=287 Identities=12% Similarity=0.111 Sum_probs=190.3
Q ss_pred HHHHHCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q psy767 91 RVYLDNEHTFSPTDFLAKLESQGIEPNRVTY-QQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGH 169 (902)
Q Consensus 91 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~-~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~ 169 (902)
..+...|++++|++.+..-.. .-+|..++ ... ...+.+.|+.++|..+|..+.+++ |.|..-|..+..+.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~r------A~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKR------AELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 345778999999999977543 34565544 444 888899999999999999999987 45555566666666
Q ss_pred HhC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHhcccCCCccchhhHHHHHHHHHhcC
Q psy767 170 SQA-----NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD-SIKTKIPSLKPQSELFLCFSFQLTNLLILVSS 243 (902)
Q Consensus 170 ~~~-----g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~-~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 243 (902)
.-. .+.+...++|+++...- |......-+.-.+.....+. .+...+..+..+|+ ++.+..+-.+|....
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---PslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV---PSLFSNLKPLYKDPE 157 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHcChh
Confidence 333 25788889999887653 43333322222222211221 23344444444443 345555566666555
Q ss_pred CHHHHHHHHHHHHHC----C----------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHH
Q psy767 244 DMASAEGILTMMSQA----G----------LEPSAQTY--TKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALA 307 (902)
Q Consensus 244 ~~~~A~~l~~~m~~~----g----------~~pd~~ty--~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~ 307 (902)
+.+-...++..+... | -.|+...| .-+-..|-..|++++|+++.++...
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--------------- 222 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--------------- 222 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---------------
Confidence 666666666665432 1 13555455 5557778899999999999987322
Q ss_pred HcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCccc-HH-HH
Q psy767 308 VSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD-YL-DI 384 (902)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~-~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~-~~-~l 384 (902)
..|+ +..|..-...|-+.|++.+|.+.++.-..-....- .| -.
T Consensus 223 ----------------------------------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~ 268 (517)
T PF12569_consen 223 ----------------------------------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKC 268 (517)
T ss_pred ----------------------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 2354 56778888999999999999999987544322222 34 46
Q ss_pred HHHHHHcCChHHHHHHHHHcccCCCCCCCH--HH---------HHHHHHHcCCHHHHHHHHHHHHhcc
Q psy767 385 IHALAVSGHGEYIDEIISKIQPGVGYSADA--AN---------HIYHLINKGQIDAAYRIVNTLARSA 441 (902)
Q Consensus 385 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t---------~i~~l~~~g~~~~A~~~~~~m~~~~ 441 (902)
+..+.++|+.++|.+++....+ .+..|.. .. .-.+|.+.|++..|++.|..+.+.+
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr-~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTR-EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcC-CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6677899999999999999988 4444432 11 1345669999999999998887754
No 76
>KOG1129|consensus
Probab=98.26 E-value=2.5e-05 Score=79.83 Aligned_cols=227 Identities=12% Similarity=0.059 Sum_probs=181.0
Q ss_pred HHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 47 VYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLIS 126 (902)
Q Consensus 47 ~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~ 126 (902)
+-+...|.+-|.+.+|++.|...+. ..|-+.||-.|-++|.+-..+..|+.+|.+-.+. .|-.+||-.=
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g-- 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLG-- 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhh--
Confidence 3457788888999999988888876 4567788889999999999999999999987753 5666666432
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 127 NSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206 (902)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~ 206 (902)
....+-..++.++|.++++...+.. +.++....++..+|.-.++++-|+.+|+.+.+.|+. +...|+.+--+|.-
T Consensus 296 ---~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~y 370 (478)
T KOG1129|consen 296 ---QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLY 370 (478)
T ss_pred ---hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHh
Confidence 1556667789999999999887765 557777888888899999999999999999999976 88899999889999
Q ss_pred cCChhHHHHHHHhcccCCCccchhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 207 HGDMDSIKTKIPSLKPQSELFLCFS--FQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 207 ~g~~~~a~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
.+++|-++.-|......-..+.... +.-+..+....|++..|.+.|+.....+ ..+...+|.|.-.-.+.|++++|.
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHH
Confidence 9999999988888766544333322 2223333445799999999999888765 556778999988899999999999
Q ss_pred HHHHHh
Q psy767 285 RLLAQS 290 (902)
Q Consensus 285 ~lf~~m 290 (902)
.++...
T Consensus 450 sll~~A 455 (478)
T KOG1129|consen 450 SLLNAA 455 (478)
T ss_pred HHHHHh
Confidence 999864
No 77
>KOG2047|consensus
Probab=98.23 E-value=0.018 Score=64.66 Aligned_cols=464 Identities=10% Similarity=0.049 Sum_probs=239.6
Q ss_pred HHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHC------CCCCCHH
Q psy767 46 FVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQ------GIEPNRV 119 (902)
Q Consensus 46 ~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~------g~~pd~~ 119 (902)
|...+....+.|-.+-+.++++..+. .++..-+-.|..++..++.++|.+.+...... .-+.+..
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk---------~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~q 211 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLK---------VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQ 211 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHh---------cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhh
Confidence 33444444455555566666666555 34455677788888888888888888775432 1223444
Q ss_pred HHHHHHHhHHHHHHHHHcCCHHH---HHHHHHHhhhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q psy767 120 TYQQLISNSKLISKYCQDGNIEG---ATKILEFMRDKTFPISE--GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA 194 (902)
Q Consensus 120 t~~~ll~~~~li~~~~~~g~~~~---A~~l~~~m~~~~~~p~~--~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 194 (902)
.|.-+ -+..++.-+.-. ..+++..+..+ -+|. ..|++|.+-|.+.|.+++|.++|++.... ..+.
T Consensus 212 lw~el------cdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tv 281 (835)
T KOG2047|consen 212 LWLEL------CDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTV 281 (835)
T ss_pred HHHHH------HHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heeh
Confidence 45444 444443332221 22333333222 1222 45677777777777777777777766554 2334
Q ss_pred HHHHHHHHHHHHcCC----------------------hhHHHHHHHhcccCCCcc--------chhhHHHHHH-HHHhcC
Q psy767 195 QTYTKLMCGYAKHGD----------------------MDSIKTKIPSLKPQSELF--------LCFSFQLTNL-LILVSS 243 (902)
Q Consensus 195 ~ty~~ll~a~~~~g~----------------------~~~a~~l~~~~~~~~~~~--------~~~~~~~~~~-~~~~~g 243 (902)
.-|+.+..+|+..-. ++-...-|+.+....... ++.....+.. +-...|
T Consensus 282 rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~ 361 (835)
T KOG2047|consen 282 RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEG 361 (835)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcC
Confidence 444455555443211 111222222222211110 0001111111 111245
Q ss_pred CHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCc----cc
Q psy767 244 DMASAEGILTMMSQAG-----LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHG----EY 314 (902)
Q Consensus 244 ~~~~A~~l~~~m~~~g-----~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~----~~ 314 (902)
+..+....|.+....- +-.-...|..+-..|-.+|+++.|..+|++...-. -+....+...+|.++.. ..
T Consensus 362 ~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~-y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 362 NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP-YKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchHHHHHHHHHHHHHHHhhhh
Confidence 6666666666665431 11223457777777778888888888887643322 12233445555555532 23
Q ss_pred HHHHHHHHHHhhhhhcccccc--hHHhcCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC-CCCccc-HHHH
Q psy767 315 IDEVSAIVCFVNICFHWLEGP--MMSQAGLE------PSAQTYTKLMCGYAKHGDMDSIRRLLAQNGS-SLVNGD-YLDI 384 (902)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~--~m~~~g~~------p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~~~~-~~~l 384 (902)
.+.+..+..- .+ +.-... .--+.+.+ -+...|...++.--..|-++....+++++-. +...|. ....
T Consensus 441 ~~~Al~lm~~--A~-~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 441 FEAALKLMRR--AT-HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred HHHHHHHHHh--hh-cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3333332110 00 000000 01111222 2344566666666778888888888887422 222222 1111
Q ss_pred HHHHHHcCChHHHHHHHHHcccCCCCCCCHHHH----HHHHH---HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHh
Q psy767 385 IHALAVSGHGEYIDEIISKIQPGVGYSADAANH----IYHLI---NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRH 457 (902)
Q Consensus 385 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~----i~~l~---~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~ 457 (902)
..-+-.+..++++.++|++=... =--|+.+.+ +..+. ...+++.|..+|++..+.. +|.
T Consensus 518 AmfLEeh~yfeesFk~YErgI~L-Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C--pp~----------- 583 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISL-FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC--PPE----------- 583 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCcc-CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--CHH-----------
Confidence 12223455568999999987762 223444432 22222 4457999999999998832 232
Q ss_pred hhhcCCCCCccccchHHHHHHHH----hcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy767 458 MVKTNQPGVGYSADAANHIYHLI----NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRL 533 (902)
Q Consensus 458 ~~~~~~~~~g~~~~~~~li~~~~----k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m 533 (902)
.+-.+...|+ +.|....|+.+++..... .........||+.|.--+..=. +..-..++++.
T Consensus 584 -------------~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG-v~~TR~iYeka 648 (835)
T KOG2047|consen 584 -------------HAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKA 648 (835)
T ss_pred -------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHH
Confidence 1223444444 458888999999996654 2222345789998887666544 45567777776
Q ss_pred HHCCCCCChhhHHHHHHHhcccccccCcchh
Q psy767 534 TDENLHPRAFNLAVLIKAHVLKEDYTGAVET 564 (902)
Q Consensus 534 ~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~ 564 (902)
.+. -||...-...++=+ =-+.+.|.++.
T Consensus 649 Ie~--Lp~~~~r~mclrFA-dlEtklGEidR 676 (835)
T KOG2047|consen 649 IES--LPDSKAREMCLRFA-DLETKLGEIDR 676 (835)
T ss_pred HHh--CChHHHHHHHHHHH-HHhhhhhhHHH
Confidence 665 57766554444322 12236777777
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.23 E-value=0.00015 Score=71.40 Aligned_cols=182 Identities=18% Similarity=0.138 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHH----H
Q psy767 348 TYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYH----L 421 (902)
Q Consensus 348 t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~----l 421 (902)
+..-|--.|...|+...|..-+++ +...|.... |..+...|.+.|..+.|.+-|++... +.|+.-.+++. +
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHH
Confidence 455667789999999999999998 555555544 88999999999999999999999988 78887766554 5
Q ss_pred HHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchH-HHHHHHHhcCChHHHHHHHHHHHHccC
Q psy767 422 INKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAA-NHIYHLINKGQIDAAYRIVNTLARSAN 500 (902)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~li~~~~k~g~~~~A~~l~~~m~~~~~ 500 (902)
|..|++++|...|+..... |..|..++++ |+..+..+.|+.+.|...|+.......
T Consensus 114 C~qg~~~eA~q~F~~Al~~-----------------------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-----------------------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-----------------------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 8999999999999998764 4455555655 577778899999999999999988743
Q ss_pred CCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchh
Q psy767 501 INGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVET 564 (902)
Q Consensus 501 ~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~ 564 (902)
. .+...-.+.....+.|+ .-.|..+++.....|. +++.+.-..|+-. - ..|+.+.
T Consensus 171 ~---~~~~~l~~a~~~~~~~~-y~~Ar~~~~~~~~~~~-~~A~sL~L~iria-k---~~gd~~~ 225 (250)
T COG3063 171 Q---FPPALLELARLHYKAGD-YAPARLYLERYQQRGG-AQAESLLLGIRIA-K---RLGDRAA 225 (250)
T ss_pred C---CChHHHHHHHHHHhccc-chHHHHHHHHHHhccc-ccHHHHHHHHHHH-H---HhccHHH
Confidence 2 33456778888888999 9999999999988876 8887777777544 3 5566655
No 79
>KOG1173|consensus
Probab=98.23 E-value=0.0035 Score=69.33 Aligned_cols=282 Identities=9% Similarity=0.030 Sum_probs=185.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 193 SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMC 272 (902)
Q Consensus 193 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~ 272 (902)
+......-..-|-..+++.+..++++.+.+..+... ..+.+-+..+...|+-..-..+=..|.+. .+-...+|-++-.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~-~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHL-PCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCc-chHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 444444445555566777777777766665433222 22333333444455555555555555544 2556778888888
Q ss_pred HHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCC-HHHHHH
Q psy767 273 GYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS-AQTYTK 351 (902)
Q Consensus 273 a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~-~~t~~~ 351 (902)
-|...|+..+|.+.|.+. .++.|. ...|-.
T Consensus 321 YYl~i~k~seARry~SKa-------------------------------------------------t~lD~~fgpaWl~ 351 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKA-------------------------------------------------TTLDPTFGPAWLA 351 (611)
T ss_pred HHHHhcCcHHHHHHHHHH-------------------------------------------------hhcCccccHHHHH
Confidence 888888899998888762 122222 245666
Q ss_pred HHHHHHHcCCHHHHHHHHHHc--CCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHH---HHH-HHHcC
Q psy767 352 LMCGYAKHGDMDSIRRLLAQN--GSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANH---IYH-LINKG 425 (902)
Q Consensus 352 Li~~y~~~g~~~~A~~~~~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~---i~~-l~~~g 425 (902)
+...|+-.|..|.|+..+..- -..+....+--+..-|.+.++.+.|.+.|.+... +-|+..-+ +.+ ....+
T Consensus 352 fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~ 428 (611)
T KOG1173|consen 352 FGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYE 428 (611)
T ss_pred HhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHh
Confidence 677777777778777766541 1112222234455667788899999999998866 66655433 222 23788
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCC-ccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC
Q psy767 426 QIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGV-GYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGE 504 (902)
Q Consensus 426 ~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~ 504 (902)
.+.+|..+|+...... +...+.. ...|...|+-..|-+++.+++|...++...... +.
T Consensus 429 ~y~~A~~~f~~~l~~i------------------k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~---~k 487 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVI------------------KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS---PK 487 (611)
T ss_pred hhHHHHHHHHHHHHHh------------------hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC---CC
Confidence 8999999998776321 0001111 233345678888999999999999999988764 33
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q psy767 505 QLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAH 552 (902)
Q Consensus 505 ~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~ 552 (902)
++.++.++...|...|. ++.|+..|++-.. +.||..+-..++..+
T Consensus 488 ~~~~~asig~iy~llgn-ld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGN-LDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred chhHHHHHHHHHHHhcC-hHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 56789999999999999 9999999998654 689998888887655
No 80
>KOG3616|consensus
Probab=98.18 E-value=0.0041 Score=70.04 Aligned_cols=190 Identities=16% Similarity=0.163 Sum_probs=93.7
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q psy767 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKT 215 (902)
Q Consensus 136 ~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~ 215 (902)
....|.+|..+++.+..+.. -..-|..+..-|+..|+++.|.++|.+.- .++-.|..|.+.|+|+.|.+
T Consensus 744 ~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 34455555555555554432 11234555556666666666666665321 23444555666666666655
Q ss_pred HHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCC
Q psy767 216 KIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLV 295 (902)
Q Consensus 216 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~ 295 (902)
+-.+... .......|..-..-+...|++.+|+++|-.+. .|+. .|..|-+.|..++.+++..+-.....
T Consensus 813 la~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 813 LAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhhh
Confidence 5444332 22222333333333344566666655554333 3332 35556666666666655554322222
Q ss_pred CCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 296 NGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 296 ~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~ 371 (902)
..+...+..-+-..|+...++.-+ ....-|.+-+.+|...+-|++|.++-+.
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~f------------------------lea~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHF------------------------LEAGDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHH------------------------HhhhhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 222333333333333333222211 1223466777888888888888887665
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.14 E-value=0.00063 Score=73.40 Aligned_cols=197 Identities=12% Similarity=0.041 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
...|..+-..|...|+.++|...|++..+... .+...|+.+ -..+...|++++|...|+...+.+ +-+..+|
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~l------g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~ 135 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYL------GIYLTQAGNFDAAYEAFDSVLELD-PTYNYAY 135 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHH------HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 35577778888999999999999999887542 256788888 899999999999999999988765 4456788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhc
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (902)
..+..++...|++++|++.|+...+. .|+..........+...++.++|...|........... .. ........
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~-~~---~~~~~~~l 209 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ-WG---WNIVEFYL 209 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc-cH---HHHHHHHc
Confidence 88889999999999999999999886 45543222223334556789999999966543322221 11 22333335
Q ss_pred CCHHHHHHHHHHHHHCC---C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Q psy767 243 SDMASAEGILTMMSQAG---L---EPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSL 294 (902)
Q Consensus 243 g~~~~A~~l~~~m~~~g---~---~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~ 294 (902)
|+...+ ..+..+.+.- . +....+|..+-..|.+.|++++|...|++.....
T Consensus 210 g~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 210 GKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred cCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 555444 3444444221 1 1234579999999999999999999999865443
No 82
>KOG1174|consensus
Probab=98.13 E-value=0.0051 Score=65.41 Aligned_cols=275 Identities=9% Similarity=-0.018 Sum_probs=168.0
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q psy767 114 IEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS 193 (902)
Q Consensus 114 ~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd 193 (902)
++-|......+ ...+...|+.+.|...|+.....+ +-+....-.-.-.+.+.|+.+...++...+.... .-.
T Consensus 228 lr~NvhLl~~l------ak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~t 299 (564)
T KOG1174|consen 228 LRCNEHLMMAL------GKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYT 299 (564)
T ss_pred CCccHHHHHHH------hhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcc
Confidence 44455566666 777777777777777777765543 1112222222223455667776666666665432 112
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 194 AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCG 273 (902)
Q Consensus 194 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a 273 (902)
...|..-........+++.|+.+-++....+.. ....+..-..++...++.++|.--|+...... +-+..+|..|+..
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 333333344444556677777766665543322 23344455566677899999999998877643 5678999999999
Q ss_pred HHHcCCHHHHHHHHHHhccC-CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCC-HHHHHH
Q psy767 274 YAKHGDMDSVRRLLAQSGSS-LVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS-AQTYTK 351 (902)
Q Consensus 274 ~~~~g~~~~A~~lf~~m~~~-~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~-~~t~~~ 351 (902)
|...|.+.+|...-+...+. +...-.-++.....-.-.+.--+.+..+. -....+.|+ ....+.
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~--------------ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFA--------------EKSLKINPIYTPAVNL 443 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHH--------------HhhhccCCccHHHHHH
Confidence 99999999988776653221 11111222222222222233333333322 122334554 356677
Q ss_pred HHHHHHHcCCHHHHHHHHHH-cCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH
Q psy767 352 LMCGYAKHGDMDSIRRLLAQ-NGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA 415 (902)
Q Consensus 352 Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 415 (902)
+...+...|..+++..++++ +...++..-.+.+.+.+...+.+.+|++.|....+ +.|...
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr---~dP~~~ 505 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR---QDPKSK 505 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh---cCccch
Confidence 77888889999999999887 44444444477888888889999999999998877 778553
No 83
>KOG3616|consensus
Probab=98.07 E-value=0.041 Score=62.42 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=67.7
Q ss_pred HhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHH
Q psy767 50 NSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSK 129 (902)
Q Consensus 50 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~ 129 (902)
+.+-.....+..|..+.+.+..+ +.-.--|..+...|+..|+++.|.++|.+. + .++-.
T Consensus 739 ieaai~akew~kai~ildniqdq-------k~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~da----- 797 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ-------KTASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDA----- 797 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh-------ccccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHH-----
Confidence 44445666777777777766651 111223666777788888888888887653 1 24555
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy767 130 LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILT 183 (902)
Q Consensus 130 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~ 183 (902)
|.+|.+.|+|++|.++-++.... ..+...|-+-..-+-..|++.+|.++|-
T Consensus 798 -i~my~k~~kw~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 798 -IDMYGKAGKWEDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred -HHHHhccccHHHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 78888888888888776654322 2234555555555556666666665553
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.05 E-value=0.011 Score=65.66 Aligned_cols=301 Identities=11% Similarity=0.045 Sum_probs=175.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCC-CCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHH---HHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTF-PISEG-VFNALIYGHSQANDMASAEGILTMMSQAGLEPSA-QTYTK---LMCGY 204 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~-~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~---ll~a~ 204 (902)
...+...|+.+.+.+.+....+..- .++.. ........+...|++++|.+++++..+. .|+. ..+.. .....
T Consensus 13 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~ 90 (355)
T cd05804 13 ALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLG 90 (355)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhc
Confidence 5556667888887666666543321 12221 1222334567789999999999998876 3443 34432 11112
Q ss_pred HHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 205 AKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 205 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
...+..+.+.+.+.. ..................+...|++++|...+++..+.. +.+...+..+-..|...|++++|.
T Consensus 91 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~ 168 (355)
T cd05804 91 DFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGI 168 (355)
T ss_pred ccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHH
Confidence 224555566666655 112222233344455566778999999999999999875 555677888899999999999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCC--HHHHHHHHHHHHHcCCH
Q psy767 285 RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS--AQTYTKLMCGYAKHGDM 362 (902)
Q Consensus 285 ~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~--~~t~~~Li~~y~~~g~~ 362 (902)
..+.+.... ....|+ ...|..+...+...|++
T Consensus 169 ~~l~~~l~~----------------------------------------------~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 169 AFMESWRDT----------------------------------------------WDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHHhhhhc----------------------------------------------cCCCcchhHHHHHHHHHHHHHCCCH
Confidence 999873221 111233 23566788889999999
Q ss_pred HHHHHHHHHcC-CCCCcccHH------HHHHHHHHcCChHHHHHH---HHHcccC-CC-CCC-CHHHHHHHHHHcCCHHH
Q psy767 363 DSIRRLLAQNG-SSLVNGDYL------DIIHALAVSGHGEYIDEI---ISKIQPG-VG-YSA-DAANHIYHLINKGQIDA 429 (902)
Q Consensus 363 ~~A~~~~~~m~-~~~~~~~~~------~li~~~~~~g~~~~A~~l---~~~m~~~-~g-~~p-d~~t~i~~l~~~g~~~~ 429 (902)
++|..+|++.. ..+....+. .++.-+...|....+.+. ...-... .+ +.+ .......++...|+.+.
T Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 203 EAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence 99999999853 222222222 222333344433222222 2211110 11 111 01124566679999999
Q ss_pred HHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHH--HHhcCChHHHHHHHHHHHHc
Q psy767 430 AYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYH--LINKGQIDAAYRIVNTLARS 498 (902)
Q Consensus 430 A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~--~~k~g~~~~A~~l~~~m~~~ 498 (902)
|..+++.+.....-.+.. .. ........++.+ +...|+.++|.+.+......
T Consensus 283 a~~~L~~l~~~~~~~~~~-~~----------------~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 283 LDKLLAALKGRASSADDN-KQ----------------PARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHhccCch-hh----------------hHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999887642110000 00 000011123333 66889999999988777654
No 85
>KOG1173|consensus
Probab=98.05 E-value=0.0028 Score=70.15 Aligned_cols=279 Identities=8% Similarity=-0.024 Sum_probs=171.5
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
++..--.-..-|-..+++.+..++++...+.. +++...+..- |..+...|+..+-..+=..|.+. .|-...+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~------ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~s 314 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLH------IACLYELGKSNKLFLLSHKLVDL-YPSKALS 314 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHH------HHHHHHhcccchHHHHHHHHHHh-CCCCCcc
Confidence 44444444445556677777777777765531 2233333333 55666666655544444444443 2445567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHH
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL 240 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (902)
|-++---|--.|+..+|.+.|...... .|. ...|...-..|+-.|..++|+..+...-+--.. ....+-.+..-+.
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYM 391 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHH
Confidence 777777676677777777777765543 222 346677777777777777766655433221000 0001111122233
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHH
Q psy767 241 VSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSA 320 (902)
Q Consensus 241 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~ 320 (902)
..++.+.|.+.|.+..... +-|..+.+-+-......+.+.+|..+|+..... +
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------i-- 444 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------I-- 444 (611)
T ss_pred HhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------h--
Confidence 4677777777777766543 556666777776777777777787777752100 0
Q ss_pred HHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCcc-cHHHHHHHHHHcCChHHHH
Q psy767 321 IVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNG-DYLDIIHALAVSGHGEYID 398 (902)
Q Consensus 321 l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~-~~~~li~~~~~~g~~~~A~ 398 (902)
+..... ......+++.|..+|.+++.+++|+..|++ +...+... ++.++.-.|...|+++.|.
T Consensus 445 --------------k~~~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 445 --------------KSVLNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred --------------hhcccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH
Confidence 001111 113566889999999999999999999998 44444444 4788999999999999999
Q ss_pred HHHHHcccCCCCCCCHHH
Q psy767 399 EIISKIQPGVGYSADAAN 416 (902)
Q Consensus 399 ~l~~~m~~~~g~~pd~~t 416 (902)
+.|++..- +.||...
T Consensus 510 d~fhKaL~---l~p~n~~ 524 (611)
T KOG1173|consen 510 DHFHKALA---LKPDNIF 524 (611)
T ss_pred HHHHHHHh---cCCccHH
Confidence 99999977 8898753
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.04 E-value=0.00086 Score=72.35 Aligned_cols=210 Identities=12% Similarity=-0.006 Sum_probs=145.4
Q ss_pred HHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC-CHH
Q psy767 41 LLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP-NRV 119 (902)
Q Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ 119 (902)
...-.|......|.+.|+.+.|...|..... --+.+...|+.+...|...|++++|...|+...+. .| +..
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~ 133 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALA------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNY 133 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 3455566777788899999999999988887 22346788999999999999999999999999865 44 456
Q ss_pred HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q psy767 120 TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTK 199 (902)
Q Consensus 120 t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ 199 (902)
+|..+ ..++...|++++|.+.|+...+.+ |+..........+...++.++|...|.+..... .|+...+ .
T Consensus 134 a~~~l------g~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~ 203 (296)
T PRK11189 134 AYLNR------GIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N 203 (296)
T ss_pred HHHHH------HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H
Confidence 67777 788889999999999999988764 333222222233455678999999997765432 3333222 2
Q ss_pred HHHHHHHcCChhHHHHHHHhccc---CCCc---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 200 LMCGYAKHGDMDSIKTKIPSLKP---QSEL---FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMC 272 (902)
Q Consensus 200 ll~a~~~~g~~~~a~~l~~~~~~---~~~~---~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~ 272 (902)
......|++..+ +.+..+.. .... .....|..+...+...|++++|...|+...+.+ +||.+-+...+.
T Consensus 204 --~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~~~ 278 (296)
T PRK11189 204 --IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYALL 278 (296)
T ss_pred --HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHHHH
Confidence 223345665544 24433332 1111 123467777888889999999999999999765 456555554333
No 87
>KOG3617|consensus
Probab=98.03 E-value=0.0015 Score=74.44 Aligned_cols=249 Identities=12% Similarity=0.100 Sum_probs=147.2
Q ss_pred HhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHC-C--------CCCCHHH
Q psy767 50 NSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQ-G--------IEPNRVT 120 (902)
Q Consensus 50 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~-g--------~~pd~~t 120 (902)
-+.|...|+.+.|-+-...+. +-..|..|.+.|.+.++.+-|.-.+-.|... | -.|+..
T Consensus 735 FSfyvtiG~MD~AfksI~~Ik-----------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~- 802 (1416)
T KOG3617|consen 735 FSFYVTIGSMDAAFKSIQFIK-----------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED- 802 (1416)
T ss_pred eeEEEEeccHHHHHHHHHHHh-----------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch-
Confidence 356777888877655544444 4678999999999999999888777777542 1 122211
Q ss_pred HHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q psy767 121 YQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL 200 (902)
Q Consensus 121 ~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 200 (902)
=..+ .-.....|.+++|+.+|.+-+..+ .|=..|-..|.+++|+++-+.=-+..+ ..||..-
T Consensus 803 eakv------AvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~y 864 (1416)
T KOG3617|consen 803 EAKV------AVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNY 864 (1416)
T ss_pred hhHH------HHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHH
Confidence 1111 223357799999999998876654 344567778999999998765333222 3466666
Q ss_pred HHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q psy767 201 MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 280 (902)
Q Consensus 201 l~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~ 280 (902)
..-+-..+|++.|++.|++..... +.+.-.+ ..+....++..+.+. |...|.---.-.-..|+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~ha-------fev~rmL---~e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHA-------FEVFRML---KEYPKQIEQYVRRKR------DESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChH-------HHHHHHH---HhChHHHHHHHHhcc------chHHHHHHHHHHhcccch
Confidence 677778889999999888765421 0000000 111112222222222 223333333344456777
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcC
Q psy767 281 DSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG 360 (902)
Q Consensus 281 ~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g 360 (902)
+.|+.+|... -||.+++...|..|+.+.+..+-. +. -|......|.+.|-..|
T Consensus 929 daAl~~Y~~A------~D~fs~VrI~C~qGk~~kAa~iA~------------------es---gd~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 929 DAALSFYSSA------KDYFSMVRIKCIQGKTDKAARIAE------------------ES---GDKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHHHHHh------hhhhhheeeEeeccCchHHHHHHH------------------hc---ccHHHHHHHHHHhhhhH
Confidence 7777777652 244555555555555444443311 12 24555556777777778
Q ss_pred CHHHHHHHHHH
Q psy767 361 DMDSIRRLLAQ 371 (902)
Q Consensus 361 ~~~~A~~~~~~ 371 (902)
++.+|..+|.+
T Consensus 982 ~v~~Av~FfTr 992 (1416)
T KOG3617|consen 982 DVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHH
Confidence 87777777765
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.00 E-value=0.02 Score=63.67 Aligned_cols=199 Identities=11% Similarity=0.036 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQG-IEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
..|..+...+...|+++.+...+....+.. ..++......+ ....+...|++++|.++++...+.. |.+...+
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~ 80 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHV-----EALSAWIAGDLPKALALLEQLLDDY-PRDLLAL 80 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHH
Confidence 446666677777788888766666654432 12232211111 0334467789999999998877653 4455555
Q ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHH
Q psy767 163 NALIYGHSQ----ANDMASAEGILTMMSQAGLEPSA-QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNL 237 (902)
Q Consensus 163 n~Li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~-~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 237 (902)
+. ...+.. .|....+.+.+.. .....|+. ..+..+...+...|++++|...++......+.. ...+..+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-AWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-cHHHHHHHH
Confidence 53 222222 3455555555544 22223443 344455667888899999999998887765333 445666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 238 LILVSSDMASAEGILTMMSQAGL-EPSA--QTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 238 ~~~~~g~~~~A~~l~~~m~~~g~-~pd~--~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
++...|++++|...++......- .|+. ..|..+...+...|++++|..+|++...
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77788999999999988776432 2333 3466788899999999999999998743
No 89
>KOG2376|consensus
Probab=97.99 E-value=0.051 Score=60.83 Aligned_cols=126 Identities=16% Similarity=0.173 Sum_probs=72.9
Q ss_pred chHHHHHHHHHhcCHHHHHHHHHHhh--------hh-hchhhccchhhhhhhccCCchhHHHHHHHHHhhhhcCCCcchh
Q psy767 675 ITSAYVVHMLRQHNLKEAALLAKSFR--------AH-YAKVVVRPVLAVSYLRTQDLPSLVTVVRAVCENWEKGEEGEKE 745 (902)
Q Consensus 675 ~~~~~l~~~~~~g~~~~a~~~~~~~~--------~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (902)
+....+.....+|+++.|++++..+. .. ..|..+. .+...+-+.++-++...++..-.+.|-+....+
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~-aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s-- 454 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG-AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS-- 454 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH-HHHHHHHhccCCccHHHHHHHHHHHHHHhcccc--
Confidence 33333444489999999999999433 21 2233322 233347788888889999999888888444322
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHH-HhhcCcchhhHHHHHHHHHHhccccccccchHHHHhhhhhh--hhHHHHHH
Q psy767 746 EEGEEKTAGQLIDMDRIFAGNVLLDIYK-ATRQDPNVVSHLEQLLNAFVEHAIPISAFSSDYIQNGLGSA--LTSDISKA 822 (902)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 822 (902)
+...+++-.... ..++. ..++--.+|++|.+.+ +...+.+..+..+. +-++....
T Consensus 455 ----------------~~l~~~~~~aa~f~lr~G--~~~ea~s~leel~k~n----~~d~~~l~~lV~a~~~~d~eka~~ 512 (652)
T KOG2376|consen 455 ----------------IALLSLMREAAEFKLRHG--NEEEASSLLEELVKFN----PNDTDLLVQLVTAYARLDPEKAES 512 (652)
T ss_pred ----------------hHHHhHHHHHhHHHHhcC--chHHHHHHHHHHHHhC----CchHHHHHHHHHHHHhcCHHHHHH
Confidence 344445555555 66665 3344556677776643 34445555544333 44444444
Q ss_pred Hhh
Q psy767 823 LGA 825 (902)
Q Consensus 823 l~~ 825 (902)
|.+
T Consensus 513 l~k 515 (652)
T KOG2376|consen 513 LSK 515 (652)
T ss_pred Hhh
Confidence 443
No 90
>KOG4340|consensus
Probab=97.96 E-value=0.003 Score=64.16 Aligned_cols=323 Identities=12% Similarity=0.103 Sum_probs=197.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT-KLMCGYAKHGD 209 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~-~ll~a~~~~g~ 209 (902)
+..+.+..++.+|.+++..-.++. +.+....+.|-.+|-+..++..|-..|+++... .|...-|. .-...+-+.+.
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcc
Confidence 777788899999999999887775 447788888999999999999999999999875 56665554 23455667788
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
+..|+++...|..... ........-..+....+++..+..+.++....| +..+.+..-....+.|++++|++-|+.
T Consensus 94 ~ADALrV~~~~~D~~~-L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPA-LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred cHHHHHHHHHhcCCHH-HHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHH
Confidence 8889888888876421 122222233333445678888888888776432 344444455556788999999999987
Q ss_pred hccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 290 SGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLL 369 (902)
Q Consensus 290 m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~ 369 (902)
..+ -.|..| ...||.-+. ..+.|+++.|++..
T Consensus 170 Alq----------------------------------------------vsGyqp-llAYniALa-Hy~~~qyasALk~i 201 (459)
T KOG4340|consen 170 ALQ----------------------------------------------VSGYQP-LLAYNLALA-HYSSRQYASALKHI 201 (459)
T ss_pred HHh----------------------------------------------hcCCCc-hhHHHHHHH-HHhhhhHHHHHHHH
Confidence 432 222222 123333222 22334555555544
Q ss_pred HHc-----CCCC----------Ccc---------cHHHHHH-------HHHHcCChHHHHHHHHHcccCCCCCCCHHHHH
Q psy767 370 AQN-----GSSL----------VNG---------DYLDIIH-------ALAVSGHGEYIDEIISKIQPGVGYSADAANHI 418 (902)
Q Consensus 370 ~~m-----~~~~----------~~~---------~~~~li~-------~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i 418 (902)
.++ +..| ... +-+.++. .+.+.|+.+.|.+.+-.|.....-..|.+|+-
T Consensus 202 SEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 202 SEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH 281 (459)
T ss_pred HHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence 432 1100 000 0122333 34577888999999999987555666667753
Q ss_pred H-HHH-HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHH
Q psy767 419 Y-HLI-NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLA 496 (902)
Q Consensus 419 ~-~l~-~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~ 496 (902)
+ ++. -.+++.++.+-+.-+... .|.++ - +..|++..|||..-++.|-+++.+-+
T Consensus 282 N~Al~n~~~~p~~g~~KLqFLL~~---nPfP~-E--------------------TFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 282 NQALMNMDARPTEGFEKLQFLLQQ---NPFPP-E--------------------TFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHhcccCCccccHHHHHHHHhc---CCCCh-H--------------------HHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 3 222 345566665555555443 33211 1 23468888999999999988876544
Q ss_pred HccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy767 497 RSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLT 534 (902)
Q Consensus 497 ~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~ 534 (902)
.....- -+...| -++.++.....++++|.+-++.+.
T Consensus 338 ~lTyk~-L~~Yly-~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 338 HLTYKF-LTPYLY-DLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred chhHHH-hhHHHH-HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 331000 011122 256666666666788877666654
No 91
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.94 E-value=1.3e-05 Score=55.25 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA 194 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 194 (902)
.+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.93 E-value=0.00051 Score=73.22 Aligned_cols=257 Identities=12% Similarity=0.031 Sum_probs=138.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
++-+.-.|++..+..-.+ .....-..+.....-+.+++...|+.+.++ .+..... .|.......+...+....+-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344455677777775554 222221223344556667777777766543 3333333 55655555544444443455
Q ss_pred hHHHHHHHhcccCCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 211 DSIKTKIPSLKPQSEL-FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
+.+..-++........ .+.....+...++...|++++|+++++.- .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554443333 23333333334445578888887777542 4566666777888888888888888888
Q ss_pred hccCCCCCCHHHHHHHHHHcCC-cccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy767 290 SGSSLVNGDYLDIIHALAVSGH-GEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRL 368 (902)
Q Consensus 290 m~~~~~~p~~~tl~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~ 368 (902)
|.+.........+..++..... .+....+..++. ++ .....++..+.+.+..++...|++++|..+
T Consensus 157 ~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~------------El-~~~~~~t~~~lng~A~~~l~~~~~~eAe~~ 223 (290)
T PF04733_consen 157 MQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFE------------EL-SDKFGSTPKLLNGLAVCHLQLGHYEEAEEL 223 (290)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHH------------HH-HCCS--SHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHH------------HH-HhccCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7665332223333333333211 122333333321 22 223456778888888888888888888888
Q ss_pred HHH-cCCCCCccc-HHHHHHHHHHcCCh-HHHHHHHHHcccCCCCCCCH
Q psy767 369 LAQ-NGSSLVNGD-YLDIIHALAVSGHG-EYIDEIISKIQPGVGYSADA 414 (902)
Q Consensus 369 ~~~-m~~~~~~~~-~~~li~~~~~~g~~-~~A~~l~~~m~~~~g~~pd~ 414 (902)
+.+ +...+..++ ...+|......|+. +.+.+.+.+++. ..|++
T Consensus 224 L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~---~~p~h 269 (290)
T PF04733_consen 224 LEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ---SNPNH 269 (290)
T ss_dssp HHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH---HTTTS
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH---hCCCC
Confidence 877 444444444 33456666666766 667778888876 55544
No 93
>KOG4162|consensus
Probab=97.91 E-value=0.067 Score=61.74 Aligned_cols=412 Identities=11% Similarity=0.016 Sum_probs=240.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC-CC
Q psy767 78 DVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT-FP 156 (902)
Q Consensus 78 g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~ 156 (902)
.+..|...|..+--+....|+++.+.+.|++....-+. ....|..+ -..|..+|.-..|..+++.-.... -+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~------als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQL------ALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHH------HHHHHHhccchHHHHHHHhhcccccCC
Confidence 34468899999999999999999999999987653322 44566666 888888999889999987654332 23
Q ss_pred CCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHcC-----------ChhHHHHHHHhc
Q psy767 157 ISEGVFNALIYGHSQ-ANDMASAEGILTMMSQA--GL--EPSAQTYTKLMCGYAKHG-----------DMDSIKTKIPSL 220 (902)
Q Consensus 157 p~~~~yn~Li~~~~~-~g~~~~A~~l~~~M~~~--g~--~pd~~ty~~ll~a~~~~g-----------~~~~a~~l~~~~ 220 (902)
++...+-..-..|.+ -|..++++++-...... |. ......|..+--+|...- ...++.+.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 333444333344443 36677777666655541 11 122334444444443321 123567777777
Q ss_pred ccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCCCH
Q psy767 221 KPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS-LVNGDY 299 (902)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~-~~~p~~ 299 (902)
.+.+.... .....+..-++-.++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+..... |. ++
T Consensus 471 v~~d~~dp-~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~ 547 (799)
T KOG4162|consen 471 VQFDPTDP-LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NH 547 (799)
T ss_pred HhcCCCCc-hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hh
Confidence 66554433 2333344445668999999999999999877889999999999999999999999988753221 11 00
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhhhhhccc----------ccchHH-hcCC-------CCCHHHHHHHHHHHHHcCC
Q psy767 300 LDIIHALAVSGHGEYIDEVSAIVCFVNICFHWL----------EGPMMS-QAGL-------EPSAQTYTKLMCGYAKHGD 361 (902)
Q Consensus 300 ~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~m~-~~g~-------~p~~~t~~~Li~~y~~~g~ 361 (902)
..+..-+--.-..++.+++....... ..-|. ++..+. +.|. .-...++..+..-....+.
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~--L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHK--LALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHH--HHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 00000000000011111111110000 00011 110111 1111 1122333333322221111
Q ss_pred ---HHHHHHHHHHcCCCCCccc--------HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH--HHHHH--HHcCC
Q psy767 362 ---MDSIRRLLAQNGSSLVNGD--------YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN--HIYHL--INKGQ 426 (902)
Q Consensus 362 ---~~~A~~~~~~m~~~~~~~~--------~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~i~~l--~~~g~ 426 (902)
.+.. +......+...+ |......+...++.++|...+.+... +.|-... ++.+. ...|.
T Consensus 626 ~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 626 SAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred hcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHh
Confidence 1111 111111122221 55677778888899999888888765 5554443 34433 37788
Q ss_pred HHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHH--HHHHHHHccCCCCC
Q psy767 427 IDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYR--IVNTLARSANINGE 504 (902)
Q Consensus 427 ~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~--l~~~m~~~~~~~~~ 504 (902)
.++|.+.|..... ++|. |++....+-.++.+.|+-.-|.. ++..+...+. .
T Consensus 700 ~~EA~~af~~Al~---ldP~---------------------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp---~ 752 (799)
T KOG4162|consen 700 LEEAKEAFLVALA---LDPD---------------------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP---L 752 (799)
T ss_pred hHHHHHHHHHHHh---cCCC---------------------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC---C
Confidence 8999888876654 3333 33344556666788887777766 8888887643 3
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 505 QLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 505 ~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
....|-.+...+-+.|+ .+.|.+.|.-..+
T Consensus 753 n~eaW~~LG~v~k~~Gd-~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGD-SKQAAECFQAALQ 782 (799)
T ss_pred CHHHHHHHHHHHHHccc-hHHHHHHHHHHHh
Confidence 45789899999999999 8999999887544
No 94
>KOG1174|consensus
Probab=97.89 E-value=0.024 Score=60.43 Aligned_cols=247 Identities=11% Similarity=0.029 Sum_probs=122.7
Q ss_pred CCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCChhHHHH
Q psy767 138 GNIEGATKILEFMRDK-TFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT-YTKLMCGYAKHGDMDSIKT 215 (902)
Q Consensus 138 g~~~~A~~l~~~m~~~-~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t-y~~ll~a~~~~g~~~~a~~ 215 (902)
++-..|...+-..... -++-|+.....+.+.+...|+.++|+..|+..+-. .|+..+ ...-.-.+.+.|+.+....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 3444444444333322 24445566677777777777777777777766554 233321 1111112345566665555
Q ss_pred HHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCC
Q psy767 216 KIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLV 295 (902)
Q Consensus 216 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~ 295 (902)
+...+..... .....+.+-...+....+++.|+.+-+..++.. +.+...|-.--..+...|++++|.--|+..
T Consensus 288 L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~A----- 360 (564)
T KOG1174|consen 288 LMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTA----- 360 (564)
T ss_pred HHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHH-----
Confidence 5444433211 111222222333334555566665555555332 222222322223455556666666666542
Q ss_pred CCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-cC
Q psy767 296 NGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQ-NG 373 (902)
Q Consensus 296 ~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~ 373 (902)
..+.| +..+|.-|+..|...|.+.+|..+-+. |.
T Consensus 361 --------------------------------------------q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 361 --------------------------------------------QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred --------------------------------------------HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 12333 567888888888888888887766554 22
Q ss_pred CCCCcccHHHHH--HHHHHcCC-hHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhc
Q psy767 374 SSLVNGDYLDII--HALAVSGH-GEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 374 ~~~~~~~~~~li--~~~~~~g~-~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
..+...---+++ ..|.-.-. -++|..++++-.+ +.|+-.. ....+...|+..++..+++.....
T Consensus 397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 222221111222 22222212 2677777777665 5565432 222334666677777766666554
No 95
>KOG4162|consensus
Probab=97.87 E-value=0.0075 Score=69.17 Aligned_cols=401 Identities=11% Similarity=0.009 Sum_probs=242.1
Q ss_pred HHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHH
Q psy767 42 LVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY 121 (902)
Q Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 121 (902)
...+|..+.-....+|++..+.+.|+.... +.--....|+.+-..|...|.-..|..+++.-......|+..+-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~------~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALP------FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 455666677777778888888888888775 33335677999999999999999999999886644333544443
Q ss_pred HHHHHhHHHHH-HHH-HcCCHHHHHHHHHHhhh-----CCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHH
Q psy767 122 QQLISNSKLIS-KYC-QDGNIEGATKILEFMRD-----KTFPISEGVFNALIYGHSQA-----------NDMASAEGILT 183 (902)
Q Consensus 122 ~~ll~~~~li~-~~~-~~g~~~~A~~l~~~m~~-----~~~~p~~~~yn~Li~~~~~~-----------g~~~~A~~l~~ 183 (902)
-.+ +. .|. +-+.+++++..-..... .+ ......|-.+--+|... ....++++.++
T Consensus 396 ~Lm------asklc~e~l~~~eegldYA~kai~~~~~~~~-~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 396 LLM------ASKLCIERLKLVEEGLDYAQKAISLLGGQRS-HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred HHH------HHHHHHhchhhhhhHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 233 22 232 23455554444333322 11 12234555555555432 23467888888
Q ss_pred HHHHCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCC
Q psy767 184 MMSQAGL-EPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQ-AGLE 261 (902)
Q Consensus 184 ~M~~~g~-~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~-~g~~ 261 (902)
+..+.+. .|+..-|. ---|+..+++..|.+...+...-+...+...+..+..++...+++.+|+.+.+.... .|.
T Consensus 469 ~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~- 545 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD- 545 (799)
T ss_pred HHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-
Confidence 8877653 34433333 345677889999999999998887778888899999999999999999999886654 332
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc--------------------------CCCCCC----HHHHHHHHHHcCC
Q psy767 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS--------------------------SLVNGD----YLDIIHALAVSGH 311 (902)
Q Consensus 262 pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~--------------------------~~~~p~----~~tl~~~l~~~~~ 311 (902)
|...-..=|..-..-++.++|+.....+.. ....|. -...+..+.+ .+
T Consensus 546 -N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~ 623 (799)
T KOG4162|consen 546 -NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQ 623 (799)
T ss_pred -hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hh
Confidence 111111111111223444444443333211 000110 1111111111 10
Q ss_pred cccHHHHHHHHHHhhhhhcccccchHHhcCCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCccc-H
Q psy767 312 GEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS--------AQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGD-Y 381 (902)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~--------~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~-~ 381 (902)
...... + ..+....+.|. ...|....+.+.+.++.++|...+.+. +..+..+. |
T Consensus 624 ~~~~~s---------------e-~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~ 687 (799)
T KOG4162|consen 624 LKSAGS---------------E-LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVY 687 (799)
T ss_pred hhhccc---------------c-cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHH
Confidence 000000 0 00122222222 235666677888999999998665553 22222222 5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHH----HHHHcCCHHHHHH--HHHHHHhccCCCCCcccchhhHH
Q psy767 382 LDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIY----HLINKGQIDAAYR--IVNTLARSANINGEQLPVGGFLV 455 (902)
Q Consensus 382 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~----~l~~~g~~~~A~~--~~~~m~~~~~i~~~~~~~~~~~~ 455 (902)
......+...|.+++|.+.|..... +.|+++-.+. .+.+.|+...|.. ++..+.+. +|..+.
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~---dp~n~e------ 755 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL---DPLNHE------ 755 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh---CCCCHH------
Confidence 5555667788999999999999987 8888875443 4457887777766 88877764 333321
Q ss_pred HhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCC
Q psy767 456 RHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANING 503 (902)
Q Consensus 456 ~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~ 503 (902)
..|.+-..+-+.|+.+.|-+.|..........|
T Consensus 756 ---------------aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 756 ---------------AWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred ---------------HHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 256677778899999999999998877654443
No 96
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.86 E-value=0.0048 Score=60.98 Aligned_cols=197 Identities=16% Similarity=0.009 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
...-.+--+|.+.|++..|..-+++.++... -+..+|..+ ...|-+.|..+.|.+-|+...... +-+-.+.|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~------A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLN 107 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVR------AHYYQKLGENDLADESYRKALSLA-PNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHH------HHHHHHcCChhhHHHHHHHHHhcC-CCccchhh
Confidence 3466778889999999999999999987632 245677777 889999999999999999987664 44557788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhc
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (902)
..-..+|..|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|...|.+........+. ....+.......
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~-~~l~~a~~~~~~ 186 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP-ALLELARLHYKA 186 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh-HHHHHHHHHHhc
Confidence 888889999999999999999987632222 347888888888899999999999888776544332 333445555667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 243 SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 243 g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
|++-.|...++.....+. ++..+.-..|..--+.|+.+.+-+.=.++
T Consensus 187 ~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 187 GDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred ccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 888888888888877774 77777777777777888877776655544
No 97
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.84 E-value=2.5e-05 Score=53.62 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEP 192 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p 192 (902)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999987
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.81 E-value=0.00031 Score=74.88 Aligned_cols=250 Identities=16% Similarity=0.076 Sum_probs=146.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHH
Q psy767 167 YGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMA 246 (902)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 246 (902)
+-+.-.|.+..++.-.+ .....-..+..+...+.+++...|+.+.+. .++.... .|.......+...+....+-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445678888776555 222211223445667788999999877544 3443333 344444444444443334445
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHh
Q psy767 247 SAEGILTMMSQAGLEPSAQTYTKLM-CGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFV 325 (902)
Q Consensus 247 ~A~~l~~~m~~~g~~pd~~ty~~LI-~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~ 325 (902)
.+..-+++.......++..++..+. ..|...|++++|++++.+
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~------------------------------------ 127 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK------------------------------------ 127 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT------------------------------------
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc------------------------------------
Confidence 5544444444333332333333322 345556778877776653
Q ss_pred hhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHH----HcCChHHHHHHH
Q psy767 326 NICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALA----VSGHGEYIDEII 401 (902)
Q Consensus 326 ~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~----~~g~~~~A~~l~ 401 (902)
+ -+.......+..|.+.++++.|.+.++.|...........+..++. ..+.+.+|.-+|
T Consensus 128 ---------------~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 128 ---------------G--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp ---------------T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred ---------------c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 1 3456667788999999999999999999977655555544555443 234689999999
Q ss_pred HHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHH
Q psy767 402 SKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLI 480 (902)
Q Consensus 402 ~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~ 480 (902)
+++....+-+|...+ ...+....|++++|.+++...... .|..++ ...|++....
T Consensus 191 ~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~---~~~~~d---------------------~LaNliv~~~ 246 (290)
T PF04733_consen 191 EELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK---DPNDPD---------------------TLANLIVCSL 246 (290)
T ss_dssp HHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----CCHHH---------------------HHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---ccCCHH---------------------HHHHHHHHHH
Confidence 999875444333333 233345899999999999886543 333221 2557777777
Q ss_pred hcCCh-HHHHHHHHHHHHc
Q psy767 481 NKGQI-DAAYRIVNTLARS 498 (902)
Q Consensus 481 k~g~~-~~A~~l~~~m~~~ 498 (902)
..|+. +.+.+++.++...
T Consensus 247 ~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHH
T ss_pred HhCCChhHHHHHHHHHHHh
Confidence 77877 6777888887765
No 99
>KOG1914|consensus
Probab=97.80 E-value=0.099 Score=57.97 Aligned_cols=400 Identities=11% Similarity=0.118 Sum_probs=218.3
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q psy767 80 PLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN-RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 80 ~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 158 (902)
+-|+.+|+.||.-+... .++++.+.+++|. +.-|+ ...|..- |.+-.+..+++.++++|.+-..+-+ +
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~--~~FP~s~r~W~~y------i~~El~skdfe~VEkLF~RCLvkvL--n 85 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLV--NVFPSSPRAWKLY------IERELASKDFESVEKLFSRCLVKVL--N 85 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHh--ccCCCCcHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHh--h
Confidence 45899999999988777 8999999999998 44554 4456666 8888999999999999998766533 4
Q ss_pred HHHHHHHHHHHHh-CCCHH----HHHHHHHH-HHHCCCCCCH-HHHHHHH---HH------HHHcCChhHHHHHHHhccc
Q psy767 159 EGVFNALIYGHSQ-ANDMA----SAEGILTM-MSQAGLEPSA-QTYTKLM---CG------YAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 159 ~~~yn~Li~~~~~-~g~~~----~A~~l~~~-M~~~g~~pd~-~ty~~ll---~a------~~~~g~~~~a~~l~~~~~~ 222 (902)
...|..-|+---+ .|+.. ...+-|+- |.+.|+.+-. ..|+.-+ .. |....+++...+++.++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 5777777764333 23322 22233332 3344544432 2344333 32 3444455667777877776
Q ss_pred CCCccchhhHHH-------HHHHHH------hcCCHHHHHHHHHHHHH--CCCCCCHHH---------------HHHHHH
Q psy767 223 QSELFLCFSFQL-------TNLLIL------VSSDMASAEGILTMMSQ--AGLEPSAQT---------------YTKLMC 272 (902)
Q Consensus 223 ~~~~~~~~~~~~-------~~~~~~------~~g~~~~A~~l~~~m~~--~g~~pd~~t---------------y~~LI~ 272 (902)
.........+.- ++.+.+ ....+-.|.++++++.. +|+..+..+ |-.+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 544432222211 111111 14456677777777653 343222222 222221
Q ss_pred HHHHcCCHHHHHHHHHHhccCCCCCCH----HHHHHHHHHcC-CcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHH
Q psy767 273 GYAKHGDMDSVRRLLAQSGSSLVNGDY----LDIIHALAVSG-HGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQ 347 (902)
Q Consensus 273 a~~~~g~~~~A~~lf~~m~~~~~~p~~----~tl~~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~ 347 (902)
-=-.++- ...+-.+.. .++-.++...+ ..+-+..+...+.-+. +...+.|-.|+..
T Consensus 246 wEksNpL-----------~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s--------~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 246 WEKSNPL-----------RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS--------DLLTEKGDVPDAK 306 (656)
T ss_pred HHhcCCc-----------ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh--------HHHHHhcccccch
Confidence 1111100 000000000 00000110001 0111111100000000 0112222222211
Q ss_pred --------HHHHHHHHHHHc------------------CCHHHHHHHHHHc-CCCCCccc--HHHHHHHHHHcCChHHHH
Q psy767 348 --------TYTKLMCGYAKH------------------GDMDSIRRLLAQN-GSSLVNGD--YLDIIHALAVSGHGEYID 398 (902)
Q Consensus 348 --------t~~~Li~~y~~~------------------g~~~~A~~~~~~m-~~~~~~~~--~~~li~~~~~~g~~~~A~ 398 (902)
+|...|.+..+. +..+....++++. ......++ |-.+++...+..-...|.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 122222221111 1133334444442 22223333 777888888888888999
Q ss_pred HHHHHcccCCCCCCCHHHH---HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHH
Q psy767 399 EIISKIQPGVGYSADAANH---IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANH 475 (902)
Q Consensus 399 ~l~~~m~~~~g~~pd~~t~---i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 475 (902)
.+|.+..+ .+..+.++-+ +.-|.-.++..-|.++|+.=.++++-.|. .....
T Consensus 387 ~iF~kaR~-~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~------------------------yv~~Y 441 (656)
T KOG1914|consen 387 KIFKKARE-DKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPE------------------------YVLKY 441 (656)
T ss_pred HHHHHHhh-ccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChH------------------------HHHHH
Confidence 99999988 6677744322 22334678888899999888887766554 23345
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 476 IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 476 i~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
++-+...++-..|..+|+.......++..+...|+.+|..=..-|+ +.-++++-+++..
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd-L~si~~lekR~~~ 500 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD-LNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc-HHHHHHHHHHHHH
Confidence 5567788888899999999888755554566788888888888888 8888888887643
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.79 E-value=0.032 Score=70.66 Aligned_cols=338 Identities=10% Similarity=-0.025 Sum_probs=192.9
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--C----CCCHH--HHHHHHHHHH
Q psy767 134 YCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG--L----EPSAQ--TYTKLMCGYA 205 (902)
Q Consensus 134 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g--~----~pd~~--ty~~ll~a~~ 205 (902)
....|+++.+...++.+.......+..........+...|++++|..++......- . .|... ....+-..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 34567777777777665322111112223344455567788888888888765431 0 11111 1122233455
Q ss_pred HcCChhHHHHHHHhcccCCCccch----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHH
Q psy767 206 KHGDMDSIKTKIPSLKPQSELFLC----FSFQLTNLLILVSSDMASAEGILTMMSQAGL---EP--SAQTYTKLMCGYAK 276 (902)
Q Consensus 206 ~~g~~~~a~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~---~p--d~~ty~~LI~a~~~ 276 (902)
..|++++|...++.........+. .....+...+...|+++.|...+.+.....- .+ -..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788888888888776542111111 2233344445568888888888877764211 11 12344555667788
Q ss_pred cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCC--C-CHHHHHHHH
Q psy767 277 HGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLE--P-SAQTYTKLM 353 (902)
Q Consensus 277 ~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~--p-~~~t~~~Li 353 (902)
.|++++|...+++.... ....+.. + ....+..+.
T Consensus 544 ~G~~~~A~~~~~~al~~-------------------------------------------~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 544 QGFLQAAYETQEKAFQL-------------------------------------------IEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred CCCHHHHHHHHHHHHHH-------------------------------------------HHHhccccccHHHHHHHHHH
Confidence 88888888888763210 1112211 1 233455566
Q ss_pred HHHHHcCCHHHHHHHHHHcCC----CCC---cccHHHHHHHHHHcCChHHHHHHHHHcccC---CCCCCCHHH-----HH
Q psy767 354 CGYAKHGDMDSIRRLLAQNGS----SLV---NGDYLDIIHALAVSGHGEYIDEIISKIQPG---VGYSADAAN-----HI 418 (902)
Q Consensus 354 ~~y~~~g~~~~A~~~~~~m~~----~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~g~~pd~~t-----~i 418 (902)
..+...|++++|...+.+... .+. ...+..+...+...|+++.|.+.+...... .+....... .+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 677788999999988876311 111 111444666778899999999888876431 111111111 11
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcccc--chHHHHHHHHhcCChHHHHHHHHHHH
Q psy767 419 YHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSA--DAANHIYHLINKGQIDAAYRIVNTLA 496 (902)
Q Consensus 419 ~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~li~~~~k~g~~~~A~~l~~~m~ 496 (902)
..+...|+.+.|..++...... .+.. ++.. ....+...+...|+.++|...+....
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~---~~~~-------------------~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKP---EFAN-------------------NHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCC---CCcc-------------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2334678999998887664331 0000 0000 01224444788999999999999876
Q ss_pred HccCCCC---CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q psy767 497 RSANING---EQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDEN 537 (902)
Q Consensus 497 ~~~~~~~---~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g 537 (902)
......+ ....+...+...+.+.|+ .++|...+.+..+..
T Consensus 719 ~~~~~~g~~~~~a~~~~~la~a~~~~G~-~~~A~~~L~~Al~la 761 (903)
T PRK04841 719 ENARSLRLMSDLNRNLILLNQLYWQQGR-KSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHh
Confidence 6431111 122345566777889999 899999999977653
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.78 E-value=0.032 Score=70.64 Aligned_cols=317 Identities=15% Similarity=0.066 Sum_probs=165.9
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHHCCCC----CCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC----H
Q psy767 88 ALLRVYLDNEHTFSPTDFLAKLESQGIE----PNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS----E 159 (902)
Q Consensus 88 ~li~~~~~~g~~~~A~~l~~~M~~~g~~----pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----~ 159 (902)
.....+...|++++|..++......--. .+......+ ...+-..+...|+++.|...++.....--..+ .
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF--NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI 491 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence 3344456678889988888876542110 011111011 00113445678899999888887654211111 1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHH
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGL---EPS--AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQL 234 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~---~pd--~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~ 234 (902)
..++.+...+...|++++|...+++.....- .+. ..++..+...+...|++++|...+++...
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~------------ 559 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ------------ 559 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------
Confidence 3445566667778899988888887754211 111 22344455566777888877776654322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCC
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLE--P-SAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGH 311 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~--p-d~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~ 311 (902)
+... .|.. + ....+..+...+...|++++|...+.+....
T Consensus 560 ----------------~~~~---~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~------------------ 602 (903)
T PRK04841 560 ----------------LIEE---QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV------------------ 602 (903)
T ss_pred ----------------HHHH---hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh------------------
Confidence 1111 1111 1 2233444455566667777777777653211
Q ss_pred cccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCCcccHHH----
Q psy767 312 GEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN----GSSLVNGDYLD---- 383 (902)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m----~~~~~~~~~~~---- 383 (902)
....+.......+..+...+...|+.+.|.+.+... ...+....+..
T Consensus 603 -------------------------~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 603 -------------------------LSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred -------------------------hhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 001110111233444555667777877777776653 11111111111
Q ss_pred -HHHHHHHcCChHHHHHHHHHcccCCCCCCCHH------HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHH
Q psy767 384 -IIHALAVSGHGEYIDEIISKIQPGVGYSADAA------NHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVR 456 (902)
Q Consensus 384 -li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~------t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~ 456 (902)
.+..+...|+.+.|.+.+..... ........ ....++...|+.++|...+..........+...... .
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a----~ 732 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPK-PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN----R 732 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCC-CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH----H
Confidence 12334456777888888766554 11111111 123345678888888888887765321111100000 0
Q ss_pred hhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHcc
Q psy767 457 HMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSA 499 (902)
Q Consensus 457 ~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~ 499 (902)
....+-..+.+.|+.++|...+.+.....
T Consensus 733 --------------~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 --------------NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred --------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 01123334778999999999999888764
No 102
>KOG0985|consensus
Probab=97.76 E-value=0.18 Score=59.74 Aligned_cols=256 Identities=12% Similarity=0.093 Sum_probs=115.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
..+-.+.|.+.+|.+-|=.. + |...|.-+|+...+.|.+++-.+++...++..-+|... +.||-+|++.+++
T Consensus 1111 akAQL~~~~v~dAieSyika---d---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1111 AKAQLQGGLVKDAIESYIKA---D---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRL 1182 (1666)
T ss_pred HHHHHhcCchHHHHHHHHhc---C---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchH
Confidence 55555555555554433211 1 23455555555555555555555554444443333332 2445555555555
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
.+...++.. |+......+..-+...+.++.|.-+|... .-|..|...+...|++..|..--++.
T Consensus 1183 ~elE~fi~g-------pN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1183 TELEEFIAG-------PNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHhcC-------CCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 544333221 11122222222233334444444444322 23555556666666666665544431
Q ss_pred ccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy767 291 GSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLA 370 (902)
Q Consensus 291 ~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~ 370 (902)
....+|..+ ..+|-+.+....+ + |-...+-....-..-|+.-|-..|-+++-+.+++
T Consensus 1247 ---ns~ktWK~V---cfaCvd~~EFrlA-------Q----------iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1247 ---NSTKTWKEV---CFACVDKEEFRLA-------Q----------ICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred ---cchhHHHHH---HHHHhchhhhhHH-------H----------hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 111122222 2222221111110 1 1112222334445567888888888888888887
Q ss_pred H-cCCCCCc-ccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy767 371 Q-NGSSLVN-GDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLA 438 (902)
Q Consensus 371 ~-m~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~ 438 (902)
. ++...-. ..|+.+.-.|++- ++++..+-++..-. +-+...++.++-....|.+..-++.+..
T Consensus 1304 a~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFws----RvNipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1304 AGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWS----RVNIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred hhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5 2221111 1155555555543 34444444443322 1223345666666666666665555443
No 103
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.75 E-value=4e-05 Score=52.82 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNR 118 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 118 (902)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 104
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.69 E-value=4.7e-05 Score=52.20 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP 116 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 116 (902)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999988
No 105
>KOG1128|consensus
Probab=97.68 E-value=0.002 Score=73.29 Aligned_cols=211 Identities=15% Similarity=0.126 Sum_probs=132.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 128 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~ 207 (902)
..+...+.+.|-...|..+|++. ..|--+|-+|+..|+..+|..+..+-.+. .||..-|..+.......
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 44588888999999999999886 56788999999999999999998888874 78898999888888877
Q ss_pred CChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 208 GDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287 (902)
Q Consensus 208 g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf 287 (902)
.-+++|.++++..-.+ +-..+.......+++.++.+.|+.-.+.. +--..+|-.+-.++.+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 7788888877765432 11111111222456666666665444332 333455555555556666666666655
Q ss_pred HHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q psy767 288 AQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIR 366 (902)
Q Consensus 288 ~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~ 366 (902)
..- -...| +...||.+-.+|.+.|+-.+|.
T Consensus 543 ~rc-------------------------------------------------vtL~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 543 HRC-------------------------------------------------VTLEPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred HHH-------------------------------------------------hhcCCCchhhhhhhhHHHHHHhhhHHHH
Confidence 431 11233 3456666666666666666666
Q ss_pred HHHHHc-CCCCCccc-HHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 367 RLLAQN-GSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 367 ~~~~~m-~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
..+++- +..-.... |...+....+-|.+++|.+.+.++..
T Consensus 574 ~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 574 RKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 666652 22211111 44444555566666666666665543
No 106
>KOG1070|consensus
Probab=97.63 E-value=0.0023 Score=77.28 Aligned_cols=215 Identities=11% Similarity=0.114 Sum_probs=150.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhc
Q psy767 261 EPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQA 340 (902)
Q Consensus 261 ~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~ 340 (902)
+-....|-.-|.-..+.++.++|.+++++....-.. .+..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~---------------REee------------------------- 1494 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINF---------------REEE------------------------- 1494 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc---------------chhH-------------------------
Confidence 445667888888888999999999999874322100 0000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HH
Q psy767 341 GLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HI 418 (902)
Q Consensus 341 g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i 418 (902)
--...|.++++.--..|.-+...++|++.....+..+ |..|...|.+.+..++|.++++.|.++.+-.+..+. +.
T Consensus 1495 ---EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~ 1571 (1710)
T KOG1070|consen 1495 ---EKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYA 1571 (1710)
T ss_pred ---HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHH
Confidence 0123566666666666677777788877544434433 778889999999999999999999887775566665 56
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy767 419 YHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARS 498 (902)
Q Consensus 419 ~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~ 498 (902)
..+.++...+.|..++++..+.. |.+.|+ -...-....-.+.|+.+.+..+|+.....
T Consensus 1572 ~fLl~~ne~~aa~~lL~rAL~~l---Pk~eHv-------------------~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1572 DFLLRQNEAEAARELLKRALKSL---PKQEHV-------------------EFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred HHHhcccHHHHHHHHHHHHHhhc---chhhhH-------------------HHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 66778888888888888877642 111111 01111333345889999999999988765
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhh
Q psy767 499 ANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFN 544 (902)
Q Consensus 499 ~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t 544 (902)
. |...+.|+..|+.-.++|. .+.+..+|++..+.++.|-..-
T Consensus 1630 y---PKRtDlW~VYid~eik~~~-~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1630 Y---PKRTDLWSVYIDMEIKHGD-IKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred C---ccchhHHHHHHHHHHccCC-HHHHHHHHHHHHhcCCChhHhH
Confidence 3 2345789999999999999 8999999999999988876433
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.62 E-value=0.006 Score=63.39 Aligned_cols=189 Identities=14% Similarity=0.005 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhc
Q psy767 261 EPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQA 340 (902)
Q Consensus 261 ~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~ 340 (902)
......+-.+...|.+.|++++|...|++... ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----------------------------------------------~~ 63 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALES----------------------------------------------RY 63 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------------------------hC
Confidence 44566777788888999999999999987322 11
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCccc----HHHHHHHHHHc--------CChHHHHHHHHHccc
Q psy767 341 GLEPS-AQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGD----YLDIIHALAVS--------GHGEYIDEIISKIQP 406 (902)
Q Consensus 341 g~~p~-~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~----~~~li~~~~~~--------g~~~~A~~l~~~m~~ 406 (902)
.-.|. ...+..+..+|...|++++|...+++. ...|..+. +..+..++... |+++.|.+.|+.+..
T Consensus 64 p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 64 PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 11121 245677778888889999999998874 34444443 33344444433 566778888887766
Q ss_pred CCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChH
Q psy767 407 GVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQID 486 (902)
Q Consensus 407 ~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~ 486 (902)
..|+......++...+..... ... ..+.+-..+.+.|+++
T Consensus 144 ---~~p~~~~~~~a~~~~~~~~~~------~~~-------------------------------~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 144 ---RYPNSEYAPDAKKRMDYLRNR------LAG-------------------------------KELYVARFYLKRGAYV 183 (235)
T ss_pred ---HCCCChhHHHHHHHHHHHHHH------HHH-------------------------------HHHHHHHHHHHcCChH
Confidence 455432211111111111000 000 0123444588999999
Q ss_pred HHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q psy767 487 AAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE 536 (902)
Q Consensus 487 ~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~ 536 (902)
+|...+..........+.....+..+...+...|+ .++|..+++.+...
T Consensus 184 ~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 184 AAINRFETVVENYPDTPATEEALARLVEAYLKLGL-KDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 99999999887644333345678899999999999 99999999988765
No 108
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.57 E-value=8.1e-05 Score=49.73 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGL 190 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~ 190 (902)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
No 109
>KOG1125|consensus
Probab=97.55 E-value=0.0042 Score=69.01 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=60.5
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCC
Q psy767 337 MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSA 412 (902)
Q Consensus 337 m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 412 (902)
....+..+|..++..|--.|--.|++++|.+.|+. +...|.... ||-|...++...+.++|++.|++..+ ++|
T Consensus 421 a~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP 495 (579)
T KOG1125|consen 421 ARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQP 495 (579)
T ss_pred HHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCC
Confidence 44556567778888888888899999999999987 566655554 99999999999999999999999988 777
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.51 E-value=0.0099 Score=61.76 Aligned_cols=170 Identities=14% Similarity=0.072 Sum_probs=121.8
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-C
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE---GVFNALIYGHSQANDMASAEGILTMMSQAGLE-P 192 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~-p 192 (902)
....+..+ ...+.+.|+++.|...|+.+.... +.+. ..+..+..++.+.|++++|...|+++.+.... |
T Consensus 32 ~~~~~~~~------g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 32 PAEELYEE------AKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred CHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 34445555 778889999999999999987653 2222 46778889999999999999999999876321 1
Q ss_pred CH-HHHHHHHHHHHHc--------CChhHHHHHHHhcccCCCccchh--hH--------------HHHHHHHHhcCCHHH
Q psy767 193 SA-QTYTKLMCGYAKH--------GDMDSIKTKIPSLKPQSELFLCF--SF--------------QLTNLLILVSSDMAS 247 (902)
Q Consensus 193 d~-~ty~~ll~a~~~~--------g~~~~a~~l~~~~~~~~~~~~~~--~~--------------~~~~~~~~~~g~~~~ 247 (902)
.. .++..+-.++... |+.++|.+.++.+....+..... .. ..+...+...|+++.
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 11 1344444455443 67888999999887654432211 11 123344566899999
Q ss_pred HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 248 AEGILTMMSQAG--LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 248 A~~l~~~m~~~g--~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
|...+....... -+.....+..+..+|...|++++|...++.+...
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999988753 1234678999999999999999999999887554
No 111
>KOG1070|consensus
Probab=97.44 E-value=0.026 Score=68.76 Aligned_cols=209 Identities=10% Similarity=0.026 Sum_probs=165.1
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHC-CCCCCH---HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCC
Q psy767 80 PLDISHYNALLRVYLDNEHTFSPTDFLAKLESQ-GIEPNR---VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTF 155 (902)
Q Consensus 80 ~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~-g~~pd~---~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 155 (902)
|-....|-..|....+.++.+.|.+++++.+.. +++-.. -.|.++ ++.-...|.-+...++|++..+..-
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~------lNlEn~yG~eesl~kVFeRAcqycd 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAY------LNLENAYGTEESLKKVFERACQYCD 1528 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHH------HhHHHhhCcHHHHHHHHHHHHHhcc
Confidence 334567999999999999999999999998753 222111 245566 7777788888999999999987652
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc-chhhHHH
Q psy767 156 PISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF-LCFSFQL 234 (902)
Q Consensus 156 ~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~-~~~~~~~ 234 (902)
.-..|..|...|.+.+.+++|-++|+.|.+.= .-....|...+..+.+..+-+.|..++.+..+.-+.- -.....-
T Consensus 1529 --~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1529 --AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred --hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 13568999999999999999999999998762 2466789999999999999999999998877643331 1222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD 298 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~ 298 (902)
...+-.++|+.+.+..+|+.....- +.-.-.|+..|+.=.++|+.+.+..+|++....+..|-
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 4444566999999999999988763 55678999999999999999999999999988877664
No 112
>KOG1127|consensus
Probab=97.37 E-value=0.39 Score=57.18 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH--HHHH
Q psy767 345 SAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSL-VNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN--HIYH 420 (902)
Q Consensus 345 ~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~i~~ 420 (902)
|..+|++|--. ...|++.-|...|-+- ...| ....|..+...+.+..+++-|.+.|...+. +.|+... +=.+
T Consensus 816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS---LdP~nl~~WlG~A 891 (1238)
T KOG1127|consen 816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS---LDPLNLVQWLGEA 891 (1238)
T ss_pred cHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh---cCchhhHHHHHHH
Confidence 34455555443 5556666666665441 2222 222377777777888899999999999877 8887664 2223
Q ss_pred HH--HcCCHHHHHHHHHHH
Q psy767 421 LI--NKGQIDAAYRIVNTL 437 (902)
Q Consensus 421 l~--~~g~~~~A~~~~~~m 437 (902)
++ ..|+.-++..+|..-
T Consensus 892 li~eavG~ii~~~~lfaHs 910 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHS 910 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhh
Confidence 33 678888888887763
No 113
>KOG2053|consensus
Probab=97.33 E-value=0.6 Score=55.12 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCCCccchHHHHHHHHHhcCHHHHHHHHHHhhhhhchhh--ccchhhhhhhccCCchhHHHHHHHHHhhhh
Q psy767 660 EVFSQLRSVGVTIGSITSAYVVHMLRQHNLKEAALLAKSFRAHYAKVV--VRPVLAVSYLRTQDLPSLVTVVRAVCENWE 737 (902)
Q Consensus 660 ~~~~~l~~~g~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (902)
+.++-|.-..+..++.-+.+...+.-.|++.-+....+.+..+++... .-.+++.+|+... | +.|.-|.++.+|+.
T Consensus 494 ~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~-y-SkI~em~~fr~rL~ 571 (932)
T KOG2053|consen 494 ELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGA-Y-SKIPEMLAFRDRLM 571 (932)
T ss_pred HHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCc-h-hhhHHHHHHHHHHH
Confidence 466666667777788778888888888999999999888888766443 3334666665543 2 22333445555554
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.31 E-value=0.15 Score=56.11 Aligned_cols=200 Identities=16% Similarity=0.069 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q psy767 138 GNIEGATKILEFMRDKT--FPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKT 215 (902)
Q Consensus 138 g~~~~A~~l~~~m~~~~--~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~ 215 (902)
.++.++...-+.|+..+ -.|+...+...+.+.........+-.++.+-.+. .-...-|..-+ .+-..|+.++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHH
Confidence 45556666666665433 2345556666666554443333333333222221 11222333322 3445566666666
Q ss_pred HHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Q psy767 216 KIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSVRRLLAQSGSSL 294 (902)
Q Consensus 216 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~ 294 (902)
.++.+.... +.+.........++...++..+|.+.++.+... .|+ ...+-.+-.+|.+.|++.+|..+++...
T Consensus 328 ~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~--- 401 (484)
T COG4783 328 LLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYL--- 401 (484)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHh---
Confidence 666654432 234444445555555666666666666666654 344 4445555566666666666666665421
Q ss_pred CCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC
Q psy767 295 VNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGS 374 (902)
Q Consensus 295 ~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~ 374 (902)
...+-|...|..|-.+|...|+..+|..-..
T Consensus 402 ---------------------------------------------~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A---- 432 (484)
T COG4783 402 ---------------------------------------------FNDPEDPNGWDLLAQAYAELGNRAEALLARA---- 432 (484)
T ss_pred ---------------------------------------------hcCCCCchHHHHHHHHHHHhCchHHHHHHHH----
Confidence 1223356667777777777777666655433
Q ss_pred CCCcccHHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 375 SLVNGDYLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 375 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
.+|.-.|+++.|.+.+....+
T Consensus 433 -----------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 433 -----------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred -----------HHHHhCCCHHHHHHHHHHHHH
Confidence 355666777777776666654
No 115
>KOG4340|consensus
Probab=97.31 E-value=0.01 Score=60.49 Aligned_cols=308 Identities=11% Similarity=0.014 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCC-C-CcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCH--HHH--HHHH
Q psy767 348 TYTKLMCGYAKHGDMDSIRRLLAQNGSS-L-VNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADA--ANH--IYHL 421 (902)
Q Consensus 348 t~~~Li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~--i~~l 421 (902)
-+++.+....+..++++|++++...... | .....+.+...|....++..|-+.++++-. ..|.. +.+ ...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHH
Confidence 3556666677888888888888764333 2 222367777888888888888888888866 55543 333 4456
Q ss_pred HHcCCHHHHHHHHHHHHhccCCC-------------CCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHH
Q psy767 422 INKGQIDAAYRIVNTLARSANIN-------------GEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAA 488 (902)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~i~-------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A 488 (902)
.+.+.+.+|+.+...|...-.+. .....-.+-+++ ..|+-+......+.--.+.+.|++++|
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve-----Qlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE-----QLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH-----hccCCCccchhccchheeeccccHHHH
Confidence 68888888888887775421000 000000011111 112211111111111115688999999
Q ss_pred HHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhh
Q psy767 489 YRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYC 568 (902)
Q Consensus 489 ~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~ 568 (902)
.+-|+.....+.-. +...||..+.+|.+ |. .+.|+++..++.++|++--+. +++-+..-+. ....+..
T Consensus 164 vqkFqaAlqvsGyq--pllAYniALaHy~~-~q-yasALk~iSEIieRG~r~HPE-lgIGm~tegi---DvrsvgN---- 231 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ--PLLAYNLALAHYSS-RQ-YASALKHISEIIERGIRQHPE-LGIGMTTEGI---DVRSVGN---- 231 (459)
T ss_pred HHHHHHHHhhcCCC--chhHHHHHHHHHhh-hh-HHHHHHHHHHHHHhhhhcCCc-cCccceeccC---chhcccc----
Confidence 99998888765444 45688888877765 44 688999999998888753322 2111100000 0000000
Q ss_pred hhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhhhHHHHHHHHHHHHHHhCCCCChHHHHHhhh
Q psy767 569 VNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFLDAEVLRILQVAEAEFGVGSNTETLRDYVL 648 (902)
Q Consensus 569 ~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~~~~~al~ll~~m~~~~g~~P~~~t~~~lv~ 648 (902)
. ..|...+ ....+.+. +..-.+-+..+.|.+-+..|.-+..-+-|..|.-++..
T Consensus 232 -------t------~~lh~Sa--------l~eAfNLK-----aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 232 -------T------LVLHQSA--------LVEAFNLK-----AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred -------h------HHHHHHH--------HHHHhhhh-----hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 0 1111221 00000011 11111233477788888888433334456778888877
Q ss_pred ccCCCCCCChHHHHHHHHhcCCCCccchHHHHHHHHHhcCHHHHHHHHHHhhh
Q psy767 649 PVLSPPNQVSGEVFSQLRSVGVTIGSITSAYVVHMLRQHNLKEAALLAKSFRA 701 (902)
Q Consensus 649 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 701 (902)
.......-..-+-++.+-....-|.....+++.-+|+..-++-|.+++...+.
T Consensus 286 ~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 286 MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc
Confidence 77664222244466666666555666778888888999999999999987654
No 116
>KOG1125|consensus
Probab=97.29 E-value=0.015 Score=64.73 Aligned_cols=186 Identities=11% Similarity=0.031 Sum_probs=139.3
Q ss_pred HHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC
Q psy767 93 YLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA 172 (902)
Q Consensus 93 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~ 172 (902)
+.++|+..+|.-+|+...+.... +...|..| -...+..++-..|+..+.+..+.+ +-|....-+|.-.|...
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~L------G~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKL------GITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNE 366 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHh------hhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhh
Confidence 56789999999999988876432 56677777 667777778888888888887776 55678888888899999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHHcCChhHHHHHHHhccc-CCCccchhhHHHHHHHHH
Q psy767 173 NDMASAEGILTMMSQAGLEPSAQTYTKLM-----------CGYAKHGDMDSIKTKIPSLKP-QSELFLCFSFQLTNLLIL 240 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd~~ty~~ll-----------~a~~~~g~~~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 240 (902)
|.-..|++.|+.-..... .|..+. +.+.....+....++|-++.. .+...++.....+..+|.
T Consensus 367 g~q~~Al~~L~~Wi~~~p-----~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKP-----KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhHHHHHHHHHHHHHhCc-----cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 999999999988765421 011111 112222233345555555544 344477788888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 241 VSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 241 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
..|+++.|...|+..+... +-|...||.|-..++...+.++|+.-|++...
T Consensus 442 ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred cchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 9999999999999998764 66788999999999999999999999998654
No 117
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.29 E-value=0.0032 Score=55.00 Aligned_cols=77 Identities=10% Similarity=0.202 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTF-PISEGVFNALIYGHSQAN--------DMASAEGILTMMSQAGLEPSAQTYTKLM 201 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~yn~Li~~~~~~g--------~~~~A~~l~~~M~~~g~~pd~~ty~~ll 201 (902)
|.-+...+++...-.+|+.+++.|+ .|++.+||.++.+.++.. ++-+.+.+|++|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 7777778999999999999999999 899999999999988764 3456788999999999999999999999
Q ss_pred HHHHHc
Q psy767 202 CGYAKH 207 (902)
Q Consensus 202 ~a~~~~ 207 (902)
..+.+.
T Consensus 112 ~~Llkg 117 (120)
T PF08579_consen 112 GSLLKG 117 (120)
T ss_pred HHHHHh
Confidence 987653
No 118
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.27 E-value=0.00022 Score=47.52 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCC
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGI 114 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~ 114 (902)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999999874
No 119
>KOG1127|consensus
Probab=97.25 E-value=0.78 Score=54.79 Aligned_cols=196 Identities=12% Similarity=0.022 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
..|..|-.-|...-+...|...|+...+... -|......+ .+.|++..+++.|..+.-..-+.. +.-...+|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~------adtyae~~~we~a~~I~l~~~qka-~a~~~k~n 564 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAAS------ADTYAEESTWEEAFEICLRAAQKA-PAFACKEN 564 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHH------HHHhhccccHHHHHHHHHHHhhhc-hHHHHHhh
Confidence 4577888888777778888888888765421 144556666 899999999999998844433322 22223333
Q ss_pred HHH--HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh
Q psy767 164 ALI--YGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV 241 (902)
Q Consensus 164 ~Li--~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (902)
.+- -.|...++...|..-|+...+... -|...|..+..+|.+.|++..|.+.|.+...-++... ........+.+.
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~-y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK-YGRFKEAVMECD 642 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH-HHHHHHHHHHHH
Confidence 333 345667888999999998887643 2667999999999999999999999987755432221 122223334455
Q ss_pred cCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 242 SSDMASAEGILTMMSQAG------LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 242 ~g~~~~A~~l~~~m~~~g------~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
.|++.+|...+....... -.--..++-.+...+.-.|-..+|...|+.
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 799999999888776421 111123333344444444545555555554
No 120
>KOG0624|consensus
Probab=97.24 E-value=0.36 Score=50.65 Aligned_cols=306 Identities=13% Similarity=0.080 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHH
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL---MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTN 236 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l---l~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 236 (902)
.-.--+-+.+...|++..|+.-|...++- |...|.++ ...|...|+...|+.=+..+.+..+..... ..--.
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A-RiQRg 113 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA-RIQRG 113 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-HHHhc
Confidence 33444556667778888888888887764 33344433 456777777776666666655533322111 11122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHH
Q psy767 237 LLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYID 316 (902)
Q Consensus 237 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~ 316 (902)
.++.+.|+++.|..=|+.+.... |+.. ....++.+.-..++-+.+..++.+ ..+..+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l~~ql~s---------------~~~~GD~~~ 173 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVLVQQLKS---------------ASGSGDCQN 173 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHHHHHHHH---------------HhcCCchhh
Confidence 34556788888888888877653 3211 112222222222233332222221 111111111
Q ss_pred HHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCccc--HHHHHHHHHHcCCh
Q psy767 317 EVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD--YLDIIHALAVSGHG 394 (902)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~--~~~li~~~~~~g~~ 394 (902)
.+..+-. +. .-...|...|..-..+|...|++..|+.-++....-....+ +--+-..+..-|+.
T Consensus 174 ai~~i~~-------------ll-Ei~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 174 AIEMITH-------------LL-EIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHHHH-------------HH-hcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhH
Confidence 1111100 00 11234677777888999999999999887776322212222 44566777888999
Q ss_pred HHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH
Q psy767 395 EYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN 474 (902)
Q Consensus 395 ~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 474 (902)
+.++..+++..+ +.||...+.-.|-+..++.+.+. .|.+
T Consensus 240 ~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~le---s~e~----------------------------------- 278 (504)
T KOG0624|consen 240 ENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLE---SAEQ----------------------------------- 278 (504)
T ss_pred HHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHH---HHHH-----------------------------------
Confidence 999999888877 89998765555544433333222 2221
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCC-CCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHh
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSANI-NGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPR-AFNLAVLIKAH 552 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~~~-~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~ 552 (902)
..+.++|.++.+-.+...+.... +......+..+-.++...+. +.+|++.+.+..+ +.|| +.++.--..|+
T Consensus 279 ----~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~-~~eAiqqC~evL~--~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 279 ----AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ-FGEAIQQCKEVLD--IDPDDVQVLCDRAEAY 351 (504)
T ss_pred ----HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC-HHHHHHHHHHHHh--cCchHHHHHHHHHHHH
Confidence 33456666666666665554322 21122233344455555666 9999999999876 3565 55655555555
No 121
>KOG1128|consensus
Probab=97.24 E-value=0.0093 Score=68.09 Aligned_cols=220 Identities=11% Similarity=0.035 Sum_probs=150.3
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHH
Q psy767 226 LFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHA 305 (902)
Q Consensus 226 ~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~ 305 (902)
+|.+..-..+..++...|-...|..+|+++. .|.-+|..|+..|+..+|..+..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~--------------- 450 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQE--------------- 450 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHH---------------
Confidence 3444555566666666777777777777654 4666777777777777777766542
Q ss_pred HHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHH
Q psy767 306 LAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDII 385 (902)
Q Consensus 306 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li 385 (902)
.+ -+|+...|..+.+......-+++|.++++....+ -...++
T Consensus 451 --------------------------------le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-A~r~~~--- 492 (777)
T KOG1128|consen 451 --------------------------------LE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-AQRSLA--- 492 (777)
T ss_pred --------------------------------hc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-HHHhhc---
Confidence 11 4678888888888888888899999998874332 111121
Q ss_pred HHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHH-HHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCC
Q psy767 386 HALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHL-INKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQP 464 (902)
Q Consensus 386 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l-~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~ 464 (902)
....+.+++.++.+.|+.-.+.....+..+-....+ .+.++++.|.+.|...... .|..
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---~Pd~----------------- 552 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---EPDN----------------- 552 (777)
T ss_pred cccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc---CCCc-----------------
Confidence 112236788899999988766344444444333222 3889999999988877653 2221
Q ss_pred CCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 465 GVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 465 ~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
.-...|+-.+|.+.|+-.+|...+.+..+.+..+ ..+|...+....+-|. +++|+..+.+|..
T Consensus 553 ----~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~---w~iWENymlvsvdvge-~eda~~A~~rll~ 615 (777)
T KOG1128|consen 553 ----AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH---WQIWENYMLVSVDVGE-FEDAIKAYHRLLD 615 (777)
T ss_pred ----hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC---Ceeeechhhhhhhccc-HHHHHHHHHHHHH
Confidence 1123456667999999999999999998876444 3567777777888999 9999999999754
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.21 E-value=0.0098 Score=56.46 Aligned_cols=100 Identities=5% Similarity=-0.202 Sum_probs=69.1
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
+......+...|++++|...|+...... +.+...|..+ ..++.+.|++++|...|+.....+ +.+...+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l------g~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIAL------AGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH------HHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 4455666677777777777777776543 2255566666 777777777777777777777654 5566777777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 195 (902)
..++.+.|+.++|...|+...+. .|+..
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~--~p~~~ 126 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM--SYADA 126 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 77777777777777777777665 45443
No 123
>PLN02789 farnesyltranstransferase
Probab=97.21 E-value=0.18 Score=54.70 Aligned_cols=193 Identities=9% Similarity=0.017 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHhHHHHHHHHHcC-CHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNR-VTYQQLISNSKLISKYCQDG-NIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~ll~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
+++.+-..+...++.++|+.+.+++.+. .|+. .+|+.- -.++...| ++++++..++.+.+.+ +-+..+|
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R------~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW 109 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFR------RLCLEALDADLEEELDFAEDVAEDN-PKNYQIW 109 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHH------HHHHHHcchhHHHHHHHHHHHHHHC-CcchHHh
Confidence 3455556666778889999999998864 4443 334444 34445556 5789999998888765 4555678
Q ss_pred HHHHHHHHhCCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHH
Q psy767 163 NALIYGHSQANDM--ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL 240 (902)
Q Consensus 163 n~Li~~~~~~g~~--~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (902)
+.---.+.+.|.. ++++.+++.+.+... -|..+|+...-++...|+++++++.++.+.+.+..... .+..-..++.
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s-AW~~R~~vl~ 187 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS-AWNQRYFVIT 187 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh-HHHHHHHHHH
Confidence 7665555566653 678888888887753 36778888888888888899888888888775543322 2222222222
Q ss_pred hc---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q psy767 241 VS---SD----MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG----DMDSVRRLLAQ 289 (902)
Q Consensus 241 ~~---g~----~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g----~~~~A~~lf~~ 289 (902)
.. |. .+........++... +-|...|+-+...+...+ ...+|.+.+.+
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 22 21 234555554555443 556667777777766532 23345555544
No 124
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.19 E-value=0.0026 Score=70.42 Aligned_cols=120 Identities=13% Similarity=0.008 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQ--GIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE 159 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 159 (902)
+......++..+....+.+++..++-+.+.. ...--..|..++ |..|.+.|..+.+..++..=...|+-||.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~------vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHAL------VRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHH------HHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 5556666777777777777788887777664 222223345577 88888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~ 207 (902)
.+||.||+.+.+.|++..|.++..+|...+.-.+..|+...+.+|.+-
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888888777777777777777777665
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.19 E-value=0.066 Score=53.85 Aligned_cols=148 Identities=8% Similarity=-0.012 Sum_probs=102.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
+..|...|+++.+..-...+.... . .+...++.+++...++...+.. ..|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-----~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-----H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-----c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 566778888877644432221110 0 1122566677777777776654 34667888888888888888
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHH-HHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNL-LILVSSD--MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~g~--~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf 287 (902)
++|...++.......... ..+..+.. ++...|+ .++|.+++++..+.+ +-+..++..+-..+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~P~~~-~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGENA-ELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888877654433 33333333 3455666 588999999888875 557788888999999999999999999
Q ss_pred HHhccC
Q psy767 288 AQSGSS 293 (902)
Q Consensus 288 ~~m~~~ 293 (902)
+++...
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 997654
No 126
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.17 E-value=0.0062 Score=53.30 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGL-EPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI 239 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (902)
|-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++...-..+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~i------------------------- 81 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDI------------------------- 81 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhH-------------------------
Confidence 445667777778999999999999999999 999999999999988764322111
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 240 LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 277 (902)
Q Consensus 240 ~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~ 277 (902)
.+++-..+.+|+.|...+++|+..+|+.++..+.+.
T Consensus 82 --e~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 82 --ENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred --HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHh
Confidence 112336788999999999999999999999988753
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.15 E-value=0.03 Score=56.67 Aligned_cols=128 Identities=15% Similarity=0.073 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
|...-+..+....++|++.+|...|++...- -++|...|+.+ --+|.+.|+++.|..-|.+..+-. +-+...
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~l------gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~ 170 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLL------GAALDQLGRFDEARRAYRQALELA-PNEPSI 170 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHH------HHHHHHccChhHHHHHHHHHHHhc-cCCchh
Confidence 4444445666666666666666666666542 24455666666 666666666666666666555432 223355
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIP 218 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~ 218 (902)
+|.|.-.|.-.|+.+.|..++......+.. |...-..+..+....|++++|..+-.
T Consensus 171 ~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 171 ANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 566666666666666666666666655422 44444555555666666666665544
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.06 E-value=0.053 Score=64.86 Aligned_cols=122 Identities=7% Similarity=0.033 Sum_probs=53.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA-QTYTKLMCGYAKHGD 209 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~ll~a~~~~g~ 209 (902)
.....+.|++++|+.+|+...+.. |-+...+..+..++.+.+++++|+..+++.... .|+. .....+-.++.+.|+
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcc
Confidence 444445555555555555544432 223344444555555555555555555555444 2222 233334444444555
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~ 256 (902)
+++|..+|+++.. ..+.....+..+...+...|+.++|...|+...
T Consensus 170 ~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 170 SEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred hHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555444444444 112223333333333333444444444444443
No 129
>KOG0985|consensus
Probab=97.05 E-value=1.2 Score=53.22 Aligned_cols=372 Identities=10% Similarity=0.075 Sum_probs=219.3
Q ss_pred HCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH-------------------hHHHHHHHHHcCCHHHHHHHHHHhhh---
Q psy767 95 DNEHTFSPTDFLAKLESQGIEPNRVTYQQLIS-------------------NSKLISKYCQDGNIEGATKILEFMRD--- 152 (902)
Q Consensus 95 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~-------------------~~~li~~~~~~g~~~~A~~l~~~m~~--- 152 (902)
+.++..--+-+++.....|.. |..|||++-+ -+..+.-||...+.-.|.-.+++=..
T Consensus 850 kRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~e 928 (1666)
T KOG0985|consen 850 KRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLE 928 (1666)
T ss_pred hhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHH
Confidence 344555556667777777866 8888998844 03334445544443333222211000
Q ss_pred -CCCCCCHHHHHHHHHHHHhCCCHHHHHH-----------HHHHHHHCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHH
Q psy767 153 -KTFPISEGVFNALIYGHSQANDMASAEG-----------ILTMMSQAGL--EPSAQTYTKLMCGYAKHGDMDSIKTKIP 218 (902)
Q Consensus 153 -~~~~p~~~~yn~Li~~~~~~g~~~~A~~-----------l~~~M~~~g~--~pd~~ty~~ll~a~~~~g~~~~a~~l~~ 218 (902)
-++.-....|-...+-+.+..+.+.-.+ +.++....++ .-|....+..++++-..+-..+..++++
T Consensus 929 lI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLE 1008 (1666)
T KOG0985|consen 929 LINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLE 1008 (1666)
T ss_pred HHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 0000111234444444444444443333 3334444443 2355556667888888999999999999
Q ss_pred hcccCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCC
Q psy767 219 SLKPQSELFLCF-SFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNG 297 (902)
Q Consensus 219 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p 297 (902)
++.-.+...+.. ...-+..+-+...+...+.+..+++.... .|+ +......++-+++|+.+|+.....
T Consensus 1009 KIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n---- 1077 (1666)
T KOG0985|consen 1009 KIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMN---- 1077 (1666)
T ss_pred HHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhccc----
Confidence 887655544332 11222222233445556666666665433 222 233455667788999999873221
Q ss_pred CHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCC
Q psy767 298 DYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLV 377 (902)
Q Consensus 298 ~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~ 377 (902)
...+.-++-..+. ++.+..+. +. --...+|+.+..+-.+.|.+.+|.+-|-+- .+
T Consensus 1078 -~~A~~VLie~i~~---ldRA~efA----------------e~--~n~p~vWsqlakAQL~~~~v~dAieSyika---dD 1132 (1666)
T KOG0985|consen 1078 -VSAIQVLIENIGS---LDRAYEFA----------------ER--CNEPAVWSQLAKAQLQGGLVKDAIESYIKA---DD 1132 (1666)
T ss_pred -HHHHHHHHHHhhh---HHHHHHHH----------------Hh--hCChHHHHHHHHHHHhcCchHHHHHHHHhc---CC
Confidence 1111111221222 22222111 11 124578999999999999999999888652 23
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHH
Q psy767 378 NGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVR 456 (902)
Q Consensus 378 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~ 456 (902)
...|..++....+.|.|++-...+...++ ..-.|..-+ ++.+|++.+++.+-.+++. .|+..
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id~eLi~AyAkt~rl~elE~fi~--------gpN~A-------- 1195 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYIDSELIFAYAKTNRLTELEEFIA--------GPNVA-------- 1195 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccchHHHHHHHHHhchHHHHHHHhc--------CCCch--------
Confidence 44599999999999999999888876665 566776655 8999999999888766542 12211
Q ss_pred hhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q psy767 457 HMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE 536 (902)
Q Consensus 457 ~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~ 536 (902)
+.-.+-+.|...|.++.|.-++.... -|.-|...++..|. +..|..--++.
T Consensus 1196 --------------~i~~vGdrcf~~~~y~aAkl~y~~vS-----------N~a~La~TLV~Lge-yQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1196 --------------NIQQVGDRCFEEKMYEAAKLLYSNVS-----------NFAKLASTLVYLGE-YQGAVDAARKA--- 1246 (1666)
T ss_pred --------------hHHHHhHHHhhhhhhHHHHHHHHHhh-----------hHHHHHHHHHHHHH-HHHHHHHhhhc---
Confidence 12235556888899998888776553 36677777888888 77776655543
Q ss_pred CCCCChhhHHHHHHHh
Q psy767 537 NLHPRAFNLAVLIKAH 552 (902)
Q Consensus 537 g~~Pd~~t~~~ll~a~ 552 (902)
-+..||.-+.-||
T Consensus 1247 ---ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1247 ---NSTKTWKEVCFAC 1259 (1666)
T ss_pred ---cchhHHHHHHHHH
Confidence 4567888888665
No 130
>KOG3081|consensus
Probab=97.05 E-value=0.28 Score=49.86 Aligned_cols=173 Identities=12% Similarity=0.054 Sum_probs=104.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhh
Q psy767 249 EGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNIC 328 (902)
Q Consensus 249 ~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~ 328 (902)
..+.+.+......-+......-...|+..|++++|++.....
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------------------------------------- 134 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------------------------------------- 134 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--------------------------------------
Confidence 344555555444444444444455778888888888877641
Q ss_pred hcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHH----cCChHHHHHHHHHc
Q psy767 329 FHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAV----SGHGEYIDEIISKI 404 (902)
Q Consensus 329 ~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m 404 (902)
-+......=+..+.+..+++-|.+.+++|..-....+.+.|..++.+ .+...+|.-+|++|
T Consensus 135 ---------------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~ 199 (299)
T KOG3081|consen 135 ---------------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL 199 (299)
T ss_pred ---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 01112222234456677888888888888777666666666666543 33467888888988
Q ss_pred ccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcC
Q psy767 405 QPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKG 483 (902)
Q Consensus 405 ~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g 483 (902)
-++.+.+|...+ ...++...|++++|..+++....+..-.|. ...|+|..-.-.|
T Consensus 200 s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe------------------------tL~Nliv~a~~~G 255 (299)
T KOG3081|consen 200 SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE------------------------TLANLIVLALHLG 255 (299)
T ss_pred hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH------------------------HHHHHHHHHHHhC
Confidence 765433333333 233334788899999988888877555544 3456666655566
Q ss_pred ChHH-HHHHHHHHHHc
Q psy767 484 QIDA-AYRIVNTLARS 498 (902)
Q Consensus 484 ~~~~-A~~l~~~m~~~ 498 (902)
.-.+ ..+.+.+....
T Consensus 256 kd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 256 KDAEVTERNLSQLKLS 271 (299)
T ss_pred CChHHHHHHHHHHHhc
Confidence 5544 34455555443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.05 E-value=0.046 Score=60.07 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=53.9
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCH
Q psy767 96 NEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDM 175 (902)
Q Consensus 96 ~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~ 175 (902)
.|.+++|+..++.+... .||...|..+ ....+.+.++..+|.+.++.+.... |-....+-.+-.+|.+.|++
T Consensus 319 ~~~~d~A~~~l~~L~~~--~P~N~~~~~~-----~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 319 AGQYDEALKLLQPLIAA--QPDNPYYLEL-----AGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHH-----HHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCCh
Confidence 45555555555555432 3333222222 1455555555555555555554432 11133444445555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q psy767 176 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIK 214 (902)
Q Consensus 176 ~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~ 214 (902)
.+|+.+++...... .-|...|..|..+|...|+..++.
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHH
Confidence 55555555555442 224455555555555555555443
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.04 E-value=0.017 Score=54.08 Aligned_cols=105 Identities=11% Similarity=-0.018 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
.....+...+...|++++|.+.|+.....+ +.+...+..+ ...+.+.|+++.|..+|+.....+ +.+...|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGL------AACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 345556666777777777777777776643 2255556666 667777777777777777766654 45566666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 198 (902)
.+-..|...|++++|...|+...+. .|+...+.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 6777777777788887777777665 35544443
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.057 Score=54.71 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=100.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
-..+--.|+-+....+........ +-|....+..+....+.|++..|+..|++..... .+|..+|+.+--+|.+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 455555666666666655543322 3344555667777777777777777777776543 45666777777777777777
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
++|..-|.+..+-... .+...+-+...+.-.|+.+.|..++......+ .-|..+-..+.......|++++|..+-..
T Consensus 151 ~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 151 DEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777666665542211 22233444455556777778887777777654 44777777888888899999999888765
No 134
>KOG0624|consensus
Probab=97.00 E-value=0.45 Score=49.96 Aligned_cols=299 Identities=10% Similarity=0.038 Sum_probs=164.9
Q ss_pred HHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHH---HHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 49 LNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNAL---LRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLI 125 (902)
Q Consensus 49 l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~l---i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll 125 (902)
+.+.+...|.+.+|..-|....+ -|...|-++ ...|...|+...|+.=|....+ .+||-..-..-
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve---------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQ- 111 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE---------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQ- 111 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc---------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHH-
Confidence 34444455666666666666665 344444444 3457777887777777777764 36663221110
Q ss_pred HhHHHHHHHHHcCCHHHHHHHHHHhhhCCC------------CCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q psy767 126 SNSKLISKYCQDGNIEGATKILEFMRDKTF------------PISEGVF--NALIYGHSQANDMASAEGILTMMSQAGLE 191 (902)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~------------~p~~~~y--n~Li~~~~~~g~~~~A~~l~~~M~~~g~~ 191 (902)
+ -..+.+.|.++.|..=|+...+.+- .+....| ...+..+.-.|+...|+.....+.+.. .
T Consensus 112 R----g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 112 R----GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred h----chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 0 2345677888888888877765431 0111122 223344556788888888888887763 2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 192 PSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLM 271 (902)
Q Consensus 192 pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI 271 (902)
-|...|..-..+|...|....|+.=++...+-....+...| -+..++...|+.+.++...++..+. .||....-.
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y-kis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~-- 261 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY-KISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP-- 261 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH-HHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH--
Confidence 36667777778888888888877666555443333333222 2334445566666666666666543 344322111
Q ss_pred HHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHH
Q psy767 272 CGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTK 351 (902)
Q Consensus 272 ~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~ 351 (902)
.|-+ +.+..+.+..|
T Consensus 262 -~YKk---lkKv~K~les~------------------------------------------------------------- 276 (504)
T KOG0624|consen 262 -FYKK---LKKVVKSLESA------------------------------------------------------------- 276 (504)
T ss_pred -HHHH---HHHHHHHHHHH-------------------------------------------------------------
Confidence 0111 11111111111
Q ss_pred HHHHHHHcCCHHHHHHHHHH-cCCCCCccc-----HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHH----HHHH
Q psy767 352 LMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-----YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANH----IYHL 421 (902)
Q Consensus 352 Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~----i~~l 421 (902)
......++|.++..-.+. |+..|..+. +..+-..+...|++.+|++...+... +.||.... ..+|
T Consensus 277 --e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 277 --EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEAY 351 (504)
T ss_pred --HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHHH
Confidence 112233445555544444 444444332 33455566677778888888888877 77876643 2345
Q ss_pred HHcCCHHHHHHHHHHHHh
Q psy767 422 INKGQIDAAYRIVNTLAR 439 (902)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~ 439 (902)
.-...++.|..-|+...+
T Consensus 352 l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALE 369 (504)
T ss_pred hhhHHHHHHHHHHHHHHh
Confidence 556677777777776655
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.96 E-value=0.014 Score=55.44 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=87.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q psy767 103 TDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGIL 182 (902)
Q Consensus 103 ~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~ 182 (902)
..+|++..+. .|+. +... ...+...|++++|...|+.....+ +.+...|..+..++.+.|++++|...|
T Consensus 13 ~~~~~~al~~--~p~~--~~~~------g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYAS------GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHH------HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555555533 4543 4445 677889999999999999988876 668889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccC
Q psy767 183 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 183 ~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 223 (902)
+...... ..+..++..+..++...|+.++|...|+.....
T Consensus 82 ~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 82 GHALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999864 336778888889999999999988888877653
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.95 E-value=0.022 Score=63.00 Aligned_cols=124 Identities=18% Similarity=0.150 Sum_probs=99.7
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
-.+++..+...++++.|..+|+++.+.. |+.. ..+ +..+...++-.+|.+++.+..... +-+....+.-
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~L------A~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Q 240 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLL------ARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQ 240 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHH------HHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4566667777889999999999998764 5543 335 777777888889999998887653 5566777777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQ-TYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
...|.+.++.+.|+++.+++.+. .|+.. +|..|..+|...|+++.|+-.+..+.-
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 78888999999999999999886 67665 999999999999999999988887764
No 137
>PLN02789 farnesyltranstransferase
Probab=96.95 E-value=0.11 Score=56.42 Aligned_cols=207 Identities=5% Similarity=-0.069 Sum_probs=138.6
Q ss_pred ccCCCCCCcCcccccCccccccCCCCCCCCH-HHHHHHHHHHHHCC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHH
Q psy767 53 WCSEPSLGPGNLPCEDPFSVHTGELDVPLDI-SHYNALLRVYLDNE-HTFSPTDFLAKLESQGIEPNRVTYQQLISNSKL 130 (902)
Q Consensus 53 ~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~-~~yn~li~~~~~~g-~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~l 130 (902)
+...+..++|..+.+.+.. +.|+. .+|+.--..+...| ++++++.+++++.+...+ +..+|+..
T Consensus 47 l~~~e~serAL~lt~~aI~-------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R------ 112 (320)
T PLN02789 47 YASDERSPRALDLTADVIR-------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHR------ 112 (320)
T ss_pred HHcCCCCHHHHHHHHHHHH-------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHH------
Confidence 3445566667777666665 33443 45776666666667 579999999999876543 44456544
Q ss_pred HHHHHHcCC--HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-
Q psy767 131 ISKYCQDGN--IEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH- 207 (902)
Q Consensus 131 i~~~~~~g~--~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~- 207 (902)
--.+.+.|+ .+++..+++.+.+.+ +-|..+|+...-++.+.|++++|++.++++.+.+.. |...|+.....+.+.
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcc
Confidence 334455565 367888898988876 567899999999999999999999999999998754 667777666555554
Q ss_pred --CCh----hHHHHHHHhcccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 208 --GDM----DSIKTKIPSLKPQSELFLCFSFQLTNLLILV----SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 277 (902)
Q Consensus 208 --g~~----~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~ 277 (902)
|.. ++............ +.+...+..+..++.. .+...+|...+.+....+ ..+......|+..|+..
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 222 34555554444332 2334455555555554 244566888888776643 45677888888888864
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.93 E-value=0.11 Score=62.94 Aligned_cols=237 Identities=13% Similarity=0.032 Sum_probs=143.2
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|..|+..|...+++++|.++.+...+. .|+...+-..+ ...+.+.++..++.-+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~-----G~l~~q~~~~~~~~lv--------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYIS-----GILSLSRRPLNDSNLL--------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHH-----HHHHHhhcchhhhhhh---------------
Confidence 5567999999999999999999999976654 56654443330 2245555665544443
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV 241 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (902)
.++.......++.-+..++..|...+ -+...+..+..+|.+.|+.+++..+++++.+.+ ..+....+-+...+..
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 23333333334433334444444432 233466677777777777777777777777765 3444555555566665
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHH
Q psy767 242 SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAI 321 (902)
Q Consensus 242 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l 321 (902)
. +++.|.+++...... |....++.+++++|.++..... .+.+....+
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-----------------~d~d~f~~i 209 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-----------------DDFDFFLRI 209 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-----------------ccchHHHHH
Confidence 6 777777777766542 6667788888888887654321 122222222
Q ss_pred HHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCccc--HHHHHHHHH
Q psy767 322 VCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD--YLDIIHALA 389 (902)
Q Consensus 322 ~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~--~~~li~~~~ 389 (902)
... -....|..--..++--|...|...++++++..+|+.+-....... ..-++..|.
T Consensus 210 ~~k-----------i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 210 ERK-----------VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHH-----------HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 211 122234445566777788889999999999999998533322223 334555554
No 139
>KOG3081|consensus
Probab=96.92 E-value=0.018 Score=58.12 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 138 GNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 138 g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
+.+.+|.-+|++|.++ .+|+.-+.|-+..++...|++++|..++++....
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3444455555554443 2444444444444455555555555555544444
No 140
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.90 E-value=0.009 Score=58.90 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHhHHHHHHHHH-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC----------------C
Q psy767 115 EPNRVTYQQLISNSKLISKYCQ-----DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA----------------N 173 (902)
Q Consensus 115 ~pd~~t~~~ll~~~~li~~~~~-----~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~----------------g 173 (902)
..|..+|..+ |+.|.+ .|.++-....+..|.+-|+.-|..+|+.||+.+=+. .
T Consensus 44 ~k~K~~F~~~------V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~ 117 (228)
T PF06239_consen 44 AKDKATFLEA------VDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPR 117 (228)
T ss_pred cccHHHHHHH------HHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcH
Confidence 4578888888 888875 478899999999999999999999999999998652 2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 174 DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 174 ~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
+-+-|++++++|...|+-||..|+..|+..+++.+..
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 3578999999999999999999999999999887753
No 141
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.89 E-value=0.025 Score=56.90 Aligned_cols=90 Identities=9% Similarity=-0.025 Sum_probs=43.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGH-SQAND--MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~-~~~g~--~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~ 207 (902)
...|...|++++|...|+.....+ +-+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..+...+...
T Consensus 80 g~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~ 157 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHc
Confidence 555555555555555555544443 33444444444432 34444 25555555555554311 334444444555555
Q ss_pred CChhHHHHHHHhccc
Q psy767 208 GDMDSIKTKIPSLKP 222 (902)
Q Consensus 208 g~~~~a~~l~~~~~~ 222 (902)
|++++|...++.+..
T Consensus 158 g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 158 ADYAQAIELWQKVLD 172 (198)
T ss_pred CCHHHHHHHHHHHHh
Confidence 555555555554443
No 142
>KOG0548|consensus
Probab=96.79 E-value=1.3 Score=49.65 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=79.1
Q ss_pred HHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHH
Q psy767 92 VYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE-GVFNALIYGHS 170 (902)
Q Consensus 92 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~~yn~Li~~~~ 170 (902)
+....|+++.|...|.+...... +|.+.|+.- ..+|++.|++++|++=-..-.+ +.|+. --|+-.-.++.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnr------saa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNR------SAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCC-Cccchhcch------HHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHH
Confidence 45568999999999999886543 388888888 9999999999998775544433 44554 56888888888
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q psy767 171 QANDMASAEGILTMMSQAGLEPSAQTYTKLMCGY 204 (902)
Q Consensus 171 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~ 204 (902)
-.|++++|+.-|.+-.+.. .-|...++.+..++
T Consensus 82 ~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred hcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 8999999999999988763 22445667777766
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.78 E-value=0.25 Score=59.92 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=126.4
Q ss_pred hCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCChhHHHHHHHhcccCCCccch
Q psy767 152 DKTFPI-SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT-KLMCGYAKHGDMDSIKTKIPSLKPQSELFLC 229 (902)
Q Consensus 152 ~~~~~p-~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~-~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~ 229 (902)
-.+..| +...|-.||..|-..+++++|.++.++..+. .|+...+. .+...+.+.++.+.+.-+ .
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------- 88 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------- 88 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h----------
Confidence 334444 5577999999999999999999999977765 56665433 333356666666654433 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHc
Q psy767 230 FSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVS 309 (902)
Q Consensus 230 ~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~ 309 (902)
+........++..+..+...|... .-+...+-.+..+|-+.|+.++|..+|+++.
T Consensus 89 -----~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L------------------ 143 (906)
T PRK14720 89 -----LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLV------------------ 143 (906)
T ss_pred -----hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHH------------------
Confidence 111222233455556666666653 3344578888999999999999999999842
Q ss_pred CCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q psy767 310 GHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALA 389 (902)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~ 389 (902)
+.. +-|..+.|-+...|+.. ++++|..++.+ .+..+.
T Consensus 144 -----------------------------~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K------------AV~~~i 180 (906)
T PRK14720 144 -----------------------------KAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK------------AIYRFI 180 (906)
T ss_pred -----------------------------hcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH------------HHHHHH
Confidence 222 34778888888899988 99999999876 344477
Q ss_pred HcCChHHHHHHHHHcccCCCCCCCHHH
Q psy767 390 VSGHGEYIDEIISKIQPGVGYSADAAN 416 (902)
Q Consensus 390 ~~g~~~~A~~l~~~m~~~~g~~pd~~t 416 (902)
..+++..+.++|.++.. ..|+.+.
T Consensus 181 ~~kq~~~~~e~W~k~~~---~~~~d~d 204 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVH---YNSDDFD 204 (906)
T ss_pred hhhcchHHHHHHHHHHh---cCcccch
Confidence 77788889999999887 6776654
No 144
>KOG0548|consensus
Probab=96.76 E-value=0.27 Score=54.73 Aligned_cols=347 Identities=11% Similarity=-0.012 Sum_probs=200.0
Q ss_pred ccchHHhhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCH-HHHHHHHHHHH
Q psy767 16 GITTEVSEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDI-SHYNALLRVYL 94 (902)
Q Consensus 16 g~~~~~s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~-~~yn~li~~~~ 94 (902)
|...--++.++.|...+.......+.|-++|+--..+|.+.|++++|..--..... +.|+- --|+-.-.++.
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~-------l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR-------LNPDWAKGYSRKGAALF 81 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh-------cCCchhhHHHHhHHHHH
Confidence 44445578999999999888777788999999999999999998877654444443 56665 45888888888
Q ss_pred HCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHh---------------------------------------------H
Q psy767 95 DNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISN---------------------------------------------S 128 (902)
Q Consensus 95 ~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~---------------------------------------------~ 128 (902)
-.|++++|+.-|.+=++. .| |...++-+..+ .
T Consensus 82 ~lg~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred hcccHHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 899999999999875543 22 22222222110 0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhh-----hC-------CCCC------------C----------HHHHHHHHHHHHhCCC
Q psy767 129 KLISKYCQDGNIEGATKILEFMR-----DK-------TFPI------------S----------EGVFNALIYGHSQAND 174 (902)
Q Consensus 129 ~li~~~~~~g~~~~A~~l~~~m~-----~~-------~~~p------------~----------~~~yn~Li~~~~~~g~ 174 (902)
+=|..|..-.++..|..++.... .. +..| | ..-+-.+.++.-+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 00111111111222222211100 00 0011 0 1235567777788888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc------chhhHHHHHHHHHhcCCHHHH
Q psy767 175 MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF------LCFSFQLTNLLILVSSDMASA 248 (902)
Q Consensus 175 ~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A 248 (902)
++.|++-|....+.. -+..-++..-.+|...|.+...........+.+... .......+...+.+.++++.|
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 999999988887764 244444555667777777776555544443332211 111222233344456788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHH-------------------------HHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHH
Q psy767 249 EGILTMMSQAGLEPSAQTYTK-------------------------LMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDII 303 (902)
Q Consensus 249 ~~l~~~m~~~g~~pd~~ty~~-------------------------LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~ 303 (902)
...|.+....-..||...-.. --+.+.+.|++..|+..|.+
T Consensus 318 i~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte-------------- 383 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE-------------- 383 (539)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH--------------
Confidence 888887666544444322111 12223333444444444443
Q ss_pred HHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-H
Q psy767 304 HALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-Y 381 (902)
Q Consensus 304 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~ 381 (902)
+++.. +-|...|..---+|.+.|.+..|+.--+. ++..|.... |
T Consensus 384 ---------------------------------AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 384 ---------------------------------AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred ---------------------------------HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 22222 33667888888888888888887776554 232222211 4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHc
Q psy767 382 LDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINK 424 (902)
Q Consensus 382 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~ 424 (902)
..=..++-...+++.|++.|.+-.+ ..|+...++..+.++
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale---~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALE---LDPSNAEAIDGYRRC 469 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCchhHHHHHHHHHH
Confidence 3344445555678888888888877 668777666665443
No 145
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.76 E-value=0.063 Score=64.22 Aligned_cols=138 Identities=8% Similarity=0.022 Sum_probs=115.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRV-TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPI 157 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 157 (902)
.+.++..+-.|.....+.|.+++|..+++...+. .||.. ....+ ...+.+.+++++|+...+.....+ +-
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~------a~~L~~~~~~eeA~~~~~~~l~~~-p~ 152 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILM------LRGVKRQQGIEAGRAEIELYFSGG-SS 152 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHH------HHHHHHhccHHHHHHHHHHHhhcC-CC
Confidence 4456888889999999999999999999999864 66644 44455 888999999999999999998876 55
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCc
Q psy767 158 SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 158 ~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~ 226 (902)
+....+.+-.++.+.|++++|..+|++....+ .-+..++..+-.++-..|+.++|...|+........
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 66778888899999999999999999999853 224779999999999999999999999988664433
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.76 E-value=0.045 Score=60.55 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL 240 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (902)
...+|+..+...++++.|+++|+++.+.. |+. ...+++.+...++-.+|.+++.+...... .+.........++.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34566677777899999999999999874 554 44578888888888899998888875432 23444555566677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 241 VSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 241 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
..++.+.|..+.+++.... +-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7999999999999999863 44556999999999999999999999998654
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.71 E-value=0.075 Score=50.47 Aligned_cols=128 Identities=15% Similarity=0.055 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHH-HHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--HH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVT-YQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS--EG 160 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t-~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~ 160 (902)
..|..++..+. .++...+...++.+.+.... +... +..+ .+...+...|++++|...|+......-.|+ ..
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l----~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPS-SPYAALAAL----QLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCC-ChHHHHHHH----HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 34566666663 66677777777777664211 2111 1111 124566667777777777777766542221 12
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHh
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPS 219 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 219 (902)
..-.|...+...|++++|+..++..... ......+...-..|.+.|++++|...|+.
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3344556667777777777777553322 12333444555667777777777666653
No 148
>KOG2280|consensus
Probab=96.70 E-value=1.4 Score=51.07 Aligned_cols=377 Identities=12% Similarity=0.099 Sum_probs=210.2
Q ss_pred HHhcccCCCCCCcCcccccCcc---ccccCCCCCCCCHHHHH-----HHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHH
Q psy767 49 LNSKWCSEPSLGPGNLPCEDPF---SVHTGELDVPLDISHYN-----ALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVT 120 (902)
Q Consensus 49 l~~~~~~~g~~~~A~~~f~~~~---~~~~~~~g~~pd~~~yn-----~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 120 (902)
+..++.+..+.++-.++..... ..++...|++-+..-|. .+|.-+...+.+..|.++-..|...-..- ..+
T Consensus 395 fGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~V 473 (829)
T KOG2280|consen 395 FGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRV 473 (829)
T ss_pred hcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHH
Confidence 3444555555444333333222 22335667777776664 45667777788888888887775321111 345
Q ss_pred HHHHHHhHHHHHHHHHcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC----CC
Q psy767 121 YQQLISNSKLISKYCQDGN---IEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLE----PS 193 (902)
Q Consensus 121 ~~~ll~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~----pd 193 (902)
|... ..-+.+..+ -+.+..+-+++... .. .-++|..+.+---.+|+.+.|..+++.=...+-. .+
T Consensus 474 l~~W------a~~kI~~~d~~d~~vld~I~~kls~~-~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~ 545 (829)
T KOG2280|consen 474 LLEW------ARRKIKQSDKMDEEVLDKIDEKLSAK-LT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLK 545 (829)
T ss_pred HHHH------HHHHHhccCccchHHHHHHHHHhccc-CC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhc
Confidence 5555 555555422 22333333344332 22 2356777777777788888888887642222110 12
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 194 AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCG 273 (902)
Q Consensus 194 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a 273 (902)
..-+...+.-+...|+.+-...++-.+...-.. ..+.....+...|..+|.+..+.. |. +-+..
T Consensus 546 m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~---------s~l~~~l~~~p~a~~lY~~~~r~~---~~----~~l~d 609 (829)
T KOG2280|consen 546 MKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR---------SSLFMTLRNQPLALSLYRQFMRHQ---DR----ATLYD 609 (829)
T ss_pred cchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---------HHHHHHHHhchhhhHHHHHHHHhh---ch----hhhhh
Confidence 223444556666677777666655555432100 000111223334444554443311 00 00112
Q ss_pred HHHcCCHHHHHHHHHHh------ccCCCCCCHHHHHHHHHHcCCcc-cHHHHHHHHHHhhhhhcccccchHHhcCCCCCH
Q psy767 274 YAKHGDMDSVRRLLAQS------GSSLVNGDYLDIIHALAVSGHGE-YIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSA 346 (902)
Q Consensus 274 ~~~~g~~~~A~~lf~~m------~~~~~~p~~~tl~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~ 346 (902)
+.+.++-..+...|..- ...+..|+..+...++....... ..+...+....+.. +...-.+.|.....
T Consensus 610 ~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~l-----Q~~Le~q~~~~f~d 684 (829)
T KOG2280|consen 610 FYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKL-----QRTLEDQFGGSFVD 684 (829)
T ss_pred hhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-----HHHHHHHhcccccc
Confidence 22333333333332210 01244555555555555444311 11111111111100 00112345555666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcCC
Q psy767 347 QTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQ 426 (902)
Q Consensus 347 ~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~ 426 (902)
.+.+--+.-+...|+-.+|.++-.+.+.. +..-|-.-+.+++..++|++-+++-+.++.--|+.| |+.+|.+.|+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fkip-dKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~P----FVe~c~~~~n 759 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIP-DKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLP----FVEACLKQGN 759 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCc-chhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchh----HHHHHHhccc
Confidence 66777778888999999999998887664 555677788999999999999998888875477777 9999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHH
Q psy767 427 IDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIV 492 (902)
Q Consensus 427 ~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~ 492 (902)
.++|.+++.+.... ...+.+|.++|++.+|.++-
T Consensus 760 ~~EA~KYiprv~~l--------------------------------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 760 KDEAKKYIPRVGGL--------------------------------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhhhhhccCCh--------------------------------HHHHHHHHHhccHHHHHHHH
Confidence 99999998765321 14677899999999987664
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.67 E-value=0.87 Score=48.67 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=55.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCC-cc---chHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCC--hhhHH
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSANINGE-QL---PVGGFLVRHMVKTNQPIDKVLAVCHRLTDE--NLHPR--AFNLA 546 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~~~~~~-~~---~~~n~li~~~~~~g~~~~~A~~l~~~m~~~--g~~Pd--~~t~~ 546 (902)
+...+.+.|++++|.++|++.-......+. .. ..|-..+-.+...|+ ...|...+++..+. ++... .....
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-YVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 334466777777777777776654322211 11 112122224445577 78888888887643 23222 34446
Q ss_pred HHHHHhcccccccCcchhhHhhhhhccCcc
Q psy767 547 VLIKAHVLKEDYTGAVETFEYCVNQFRATP 576 (902)
Q Consensus 547 ~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~ 576 (902)
.|+.++ ..|+.+.|+..+..|..+.
T Consensus 240 ~l~~A~-----~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 240 DLLEAY-----EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHH-----HTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHH-----HhCCHHHHHHHHHHHcccC
Confidence 667664 8999999888888886665
No 150
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.67 E-value=0.031 Score=52.18 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=75.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+...|++++|...|+.....+ +.+...|..+...+.+.|++++|..+|+.....+ ..+..++..+...+...|++
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCH
Confidence 777888999999999999987765 5677888889999999999999999999887764 33567777788888899999
Q ss_pred hHHHHHHHhcccC
Q psy767 211 DSIKTKIPSLKPQ 223 (902)
Q Consensus 211 ~~a~~l~~~~~~~ 223 (902)
++|...|+...+.
T Consensus 102 ~~A~~~~~~al~~ 114 (135)
T TIGR02552 102 ESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHh
Confidence 9888888777664
No 151
>KOG3060|consensus
Probab=96.63 E-value=0.28 Score=49.55 Aligned_cols=187 Identities=11% Similarity=0.067 Sum_probs=119.1
Q ss_pred CCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHH
Q psy767 173 NDMASAEGILTMMSQ---AG-LEPSAQ-TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMAS 247 (902)
Q Consensus 173 g~~~~A~~l~~~M~~---~g-~~pd~~-ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 247 (902)
.+.++.++++.+|.. .| ..++.. .|--++-+....|+.+.|...++.+...- +.+......-...+...|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 456666666666643 23 445554 34455666666777777777666655433 2333333344444555677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhh
Q psy767 248 AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNI 327 (902)
Q Consensus 248 A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~ 327 (902)
|.++++.+.+.. +.|.++|-.=+...-..|+.-+|++-+.+...
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~----------------------------------- 148 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD----------------------------------- 148 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----------------------------------
Confidence 777777777765 66667777666666666776677666654211
Q ss_pred hhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCccc-HHHHHHHHHHcC---ChHHHHHHHH
Q psy767 328 CFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGD-YLDIIHALAVSG---HGEYIDEIIS 402 (902)
Q Consensus 328 ~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~-~~~li~~~~~~g---~~~~A~~l~~ 402 (902)
.+.-|...|.-|-..|...|++++|.-.++++ -..|..+- +..+...+...| +.+-+.+.|.
T Consensus 149 -------------~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 149 -------------KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred -------------HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 13457888999999999999999999888884 44444444 445555554444 4577888888
Q ss_pred HcccCCCCCC
Q psy767 403 KIQPGVGYSA 412 (902)
Q Consensus 403 ~m~~~~g~~p 412 (902)
+..+ +.|
T Consensus 216 ~alk---l~~ 222 (289)
T KOG3060|consen 216 RALK---LNP 222 (289)
T ss_pred HHHH---hCh
Confidence 8877 666
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.60 E-value=0.13 Score=48.80 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISE---GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA--QTYTKLMCGYA 205 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~ty~~ll~a~~ 205 (902)
+..+ ..++...+...++.+.... +.+. ...-.+...+...|++++|...|+........|+. .....|...+.
T Consensus 19 ~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 19 LQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 5554 4788888888888877653 3331 22333446777788888888888888877522222 23344566777
Q ss_pred HcCChhHHHHHHHhc
Q psy767 206 KHGDMDSIKTKIPSL 220 (902)
Q Consensus 206 ~~g~~~~a~~l~~~~ 220 (902)
..|++++|+..++..
T Consensus 97 ~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 97 QQGQYDEALATLQQI 111 (145)
T ss_pred HcCCHHHHHHHHHhc
Confidence 788888777777653
No 153
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.60 E-value=0.025 Score=62.91 Aligned_cols=116 Identities=14% Similarity=0.185 Sum_probs=86.6
Q ss_pred HHHHHHH---CCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhCCCHHHHH
Q psy767 105 FLAKLES---QGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK--TFPISEGVFNALIYGHSQANDMASAE 179 (902)
Q Consensus 105 l~~~M~~---~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~yn~Li~~~~~~g~~~~A~ 179 (902)
++..|.+ .+...+......+ ++.+....+++.+..++-..... ....-..|..++|+.|...|..+.++
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~f------vn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l 123 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIF------VNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELL 123 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHH------HhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHH
Confidence 4444433 2334456666666 88888888888898888777654 22223355679999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCc
Q psy767 180 GILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 180 ~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~ 226 (902)
.++..=...|+=||..||+.||..+.+.|++..|.++...|...+..
T Consensus 124 ~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~ 170 (429)
T PF10037_consen 124 ELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEF 170 (429)
T ss_pred HHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999998777766665544433
No 154
>KOG2053|consensus
Probab=96.56 E-value=2.6 Score=50.06 Aligned_cols=201 Identities=11% Similarity=0.042 Sum_probs=105.7
Q ss_pred HHHHHHHH--HHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 86 YNALLRVY--LDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 86 yn~li~~~--~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
|..++.++ .+.|+.++|..+++.....+.. |..|...+ -..|-..|..++|..+|+..... -|+.....
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l------~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~ 114 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFL------QNVYRDLGKLDEAVHLYERANQK--YPSEELLY 114 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHH------HHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHH
Confidence 44455553 3566666676666665543333 55566666 66666667777777777666554 34455556
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHhcccCC-CccchhhH
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD----------MDSIKTKIPSLKPQS-ELFLCFSF 232 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~----------~~~a~~l~~~~~~~~-~~~~~~~~ 232 (902)
.+..+|.|.+.+.+-.+.=-+|-+. ..-+...|=++++.....-. ..-|.+.++.+.+.+ ......-.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~ 193 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI 193 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH
Confidence 6666666666554433332222221 11122333333333332211 123555555555544 33334444
Q ss_pred HHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCC
Q psy767 233 QLTNLLILVSSDMASAEGIL-TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVN 296 (902)
Q Consensus 233 ~~~~~~~~~~g~~~~A~~l~-~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~ 296 (902)
..+..++...|++++|..++ ....+.-..-+...-+--+..+...+++.+..++-.++...+..
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 44555555667777777766 34444333444455555666666667777666666666555433
No 155
>KOG2041|consensus
Probab=96.48 E-value=0.5 Score=53.91 Aligned_cols=58 Identities=9% Similarity=0.148 Sum_probs=38.0
Q ss_pred chHHHHHHH---HHhcCHHHHHH---HHHHhhhhhchhhccchhhhhhhccCCchhHHHHHHHH
Q psy767 675 ITSAYVVHM---LRQHNLKEAAL---LAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLVTVVRAV 732 (902)
Q Consensus 675 ~~~~~l~~~---~~~g~~~~a~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 732 (902)
..+++|+-+ +..|....|.. ++++|-...+|..+-..|+.+....+.|---.+-|=.+
T Consensus 1020 EAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1020 EAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 345555555 57777777765 45677777888888888887766666665555544333
No 156
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.47 E-value=1.7 Score=46.99 Aligned_cols=109 Identities=10% Similarity=0.064 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH-HHHHHHHHc
Q psy767 346 AQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA-NHIYHLINK 424 (902)
Q Consensus 346 ~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~i~~l~~~ 424 (902)
..+.+..|.-+...|+...|.++-++.+. |+..-|-..+.+|+..++|++..++... + -.|=.+ .|+.+|.+.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-k----KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS-K----KSPIGYEPFVEACLKY 250 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-C----CCCCChHHHHHHHHHC
Confidence 34555667777888999999999888765 3556688999999999999987776543 1 245444 388889999
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHH
Q psy767 425 GQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVN 493 (902)
Q Consensus 425 g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~ 493 (902)
|...+|..+..++.. -.-+..|.++|.+.+|.+.-.
T Consensus 251 ~~~~eA~~yI~k~~~---------------------------------~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 251 GNKKEASKYIPKIPD---------------------------------EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCHHHHHHHHHhCCh---------------------------------HHHHHHHHHCCCHHHHHHHHH
Confidence 999999988877421 246777999999999866643
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.44 E-value=0.038 Score=46.75 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=70.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+...|++++|..+|+...+.. +.+...+..+...+...|++++|.+.|+...... ..+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 677788899999999999887654 4455778888888888999999999999887764 23445777788888888888
Q ss_pred hHHHHHHHhccc
Q psy767 211 DSIKTKIPSLKP 222 (902)
Q Consensus 211 ~~a~~l~~~~~~ 222 (902)
+.|...+.....
T Consensus 85 ~~a~~~~~~~~~ 96 (100)
T cd00189 85 EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHc
Confidence 888877766543
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.42 E-value=0.043 Score=46.45 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
.|..+...+...|++++|..+|++..+... .+...+..+ ...+...|++++|.+.|+...... +.+..++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNL------AAAYYKLGKYEEALEDYEKALELD-PDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHH
Confidence 356677788889999999999999886532 234566666 888889999999999999987765 445578889
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 165 LIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 165 Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
+...+...|+.+.|...+....+.
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcc
Confidence 999999999999999999887754
No 159
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.34 E-value=0.025 Score=55.91 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhh
Q psy767 157 ISEGVFNALIYGHSQ-----ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFS 231 (902)
Q Consensus 157 p~~~~yn~Li~~~~~-----~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~ 231 (902)
.|..+|..+|..|.+ .|..+=....+..|.+-|+.-|..+|+.||..+=+ |.+- -..+|+.+...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h-------- 114 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH-------- 114 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc--------
Confidence 456888888888865 47888888899999999999999999999998875 3322 12223222221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q psy767 232 FQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 279 (902)
Q Consensus 232 ~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~ 279 (902)
.-.+-+-|.+++++|...|+.||..++..|++.+++.+.
T Consensus 115 ---------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ---------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 134566799999999999999999999999999988876
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.01 E-value=0.19 Score=45.38 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCC-C-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCHH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIE-P-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT--FPISEG 160 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~-p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~ 160 (902)
+|-.....+.+.|++++|...|+.+...... | ....+..+ ..++.+.|+++.|...|+.+.... .+....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 77 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWL------GEAYYAQGKYADAAKAFLAVVKKYPKSPKAPD 77 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH------HHHHHhhccHHHHHHHHHHHHHHCCCCCcccH
Confidence 4556777788889999999999888764311 1 12344455 778888899999999998876542 112245
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAG 189 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g 189 (902)
++..+..++.+.|+.++|.+.|+++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 67777788888899999999998888774
No 161
>KOG1538|consensus
Probab=95.92 E-value=0.55 Score=53.14 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHH---------HHHhhhCCCCCCHHHHHHHHHHHHhCCCH--HHHHHHHH
Q psy767 115 EPNRVTYQQLISNSKLISKYCQDGNIEGATKI---------LEFMRDKTFPISEGVFNALIYGHSQANDM--ASAEGILT 183 (902)
Q Consensus 115 ~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l---------~~~m~~~~~~p~~~~yn~Li~~~~~~g~~--~~A~~l~~ 183 (902)
.|..+.+.+- +.-|...|.+++|.++ |+.+.... .+.-.+++.=.+|.+..+. -+.+.-++
T Consensus 553 ~~~evp~~~~------m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~ 624 (1081)
T KOG1538|consen 553 SAVEVPQSAP------MYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELE 624 (1081)
T ss_pred eccccccccc------chhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHH
Confidence 4445555555 6777888888888765 33333221 1334566677788776653 45555677
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 184 MMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 184 ~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
+|++.|-.|+.... ...|+-.|.+.+|-++|.+...
T Consensus 625 ~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 625 ERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred HHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCc
Confidence 88889988988653 4567778899999888876533
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.90 E-value=0.13 Score=56.93 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=80.0
Q ss_pred HHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q psy767 90 LRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGH 169 (902)
Q Consensus 90 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~ 169 (902)
...+...|++++|++.|++..+.... +...|..+ ..+|.+.|++++|...++.....+ +.+...|..+..+|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~------a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADR------AQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 34556788999999999998875422 55666666 788888999999999999988765 55677888888899
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 170 SQANDMASAEGILTMMSQAGLEPSAQTYTKLMCG 203 (902)
Q Consensus 170 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a 203 (902)
.+.|++++|+..|++..+. .|+.......+..
T Consensus 81 ~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~~ 112 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASL--APGDSRFTKLIKE 112 (356)
T ss_pred HHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 9999999999999998876 4665555544433
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.90 E-value=0.16 Score=49.61 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC--CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP--NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE 159 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p--d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 159 (902)
-...|..+...+...|++++|...|++.......| ...+|..+ -..|...|++++|...++...... +...
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~l------g~~~~~~g~~~eA~~~~~~Al~~~-~~~~ 106 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNI------GLIHTSNGEHTKALEYYFQALERN-PFLP 106 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-cCcH
Confidence 35667777778888888888888888887543222 12456666 778888888888888888876653 3344
Q ss_pred HHHHHHHHHHH-------hCCCHHHHHHHHHHH
Q psy767 160 GVFNALIYGHS-------QANDMASAEGILTMM 185 (902)
Q Consensus 160 ~~yn~Li~~~~-------~~g~~~~A~~l~~~M 185 (902)
.+++.+...+. ..|+++.|+..+++.
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 56666666666 667777555555443
No 164
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.86 E-value=0.069 Score=50.76 Aligned_cols=115 Identities=19% Similarity=0.280 Sum_probs=75.6
Q ss_pred CHHHHHHHHH---HHHHCCCchHHHHHHHHHHHC--C-CCCCHH--HHHHHHH----------hHHHHHHHHHcCCHHHH
Q psy767 82 DISHYNALLR---VYLDNEHTFSPTDFLAKLESQ--G-IEPNRV--TYQQLIS----------NSKLISKYCQDGNIEGA 143 (902)
Q Consensus 82 d~~~yn~li~---~~~~~g~~~~A~~l~~~M~~~--g-~~pd~~--t~~~ll~----------~~~li~~~~~~g~~~~A 143 (902)
|+..|..++. .....++...+...+.++... | +-|+.. .|..-.+ ...++..+...|+++.|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 3455555543 345678888899988888753 2 222211 1111111 35567777789999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q psy767 144 TKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMS-----QAGLEPSAQTY 197 (902)
Q Consensus 144 ~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~-----~~g~~pd~~ty 197 (902)
..+.+.+...+ |-|...|..+|.+|...|+...|.++|+.+. +.|+.|+..|-
T Consensus 82 ~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 82 LRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 99999998887 7788999999999999999999999998874 34899988764
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.84 E-value=0.29 Score=48.01 Aligned_cols=86 Identities=9% Similarity=0.027 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN--RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE 159 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 159 (902)
....|..+...|...|++++|...|++..+....+. ...+..+ ...+.+.|+++.|...++...... +-+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~-p~~~ 106 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNM------GIIYASNGEHDKALEYYHQALELN-PKQP 106 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-cccH
Confidence 345577777778888999999999988876543332 3456666 788888899999999888877653 3345
Q ss_pred HHHHHHHHHHHhCCC
Q psy767 160 GVFNALIYGHSQAND 174 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~ 174 (902)
..+..+...|...|+
T Consensus 107 ~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 107 SALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcCC
Confidence 666777777777666
No 166
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.79 E-value=0.14 Score=46.27 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=65.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKT--FPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLE--PSAQTYTKLMCGYAK 206 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~--pd~~ty~~ll~a~~~ 206 (902)
...+.+.|++++|.+.|+.+.... -+.....+..+..++.+.|+++.|...|+.+...... .....+..+..++.+
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 667788888888888888886643 1112345666888888888888888888888765211 123456666777778
Q ss_pred cCChhHHHHHHHhcccC
Q psy767 207 HGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 207 ~g~~~~a~~l~~~~~~~ 223 (902)
.|+.++|.+.++.+...
T Consensus 89 ~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 89 LGDKEKAKATLQQVIKR 105 (119)
T ss_pred hCChHHHHHHHHHHHHH
Confidence 88888777777766554
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.74 E-value=0.23 Score=53.01 Aligned_cols=131 Identities=11% Similarity=0.032 Sum_probs=84.5
Q ss_pred HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q psy767 119 VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYG-HSQANDMASAEGILTMMSQAGLEPSAQTY 197 (902)
Q Consensus 119 ~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~-~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 197 (902)
.+|..+ +...-+.+.++.|..+|....+.+ ..+...|-..... |...++.+.|.++|+...+. +..+..-|
T Consensus 2 ~v~i~~------m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQY------MRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFW 73 (280)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHH
T ss_pred HHHHHH------HHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHH
Confidence 356666 888888888999999999987554 2233444444444 33356777799999998876 34466777
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy767 198 TKLMCGYAKHGDMDSIKTKIPSLKPQSELF--LCFSFQLTNLLILVSSDMASAEGILTMMSQ 257 (902)
Q Consensus 198 ~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~ 257 (902)
..-+..+.+.++.+.|..+|+.....-... ....|..++.+=...|+++.+..+.+++.+
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888889999999999998887752111 123444444444555666666666655554
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.68 E-value=0.033 Score=44.92 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=46.6
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll 201 (902)
...|++++|.++|+.+.... |-+...+-.+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 45688888888888877664 456777778888888888888888888888776 56655555443
No 169
>KOG1914|consensus
Probab=95.67 E-value=0.59 Score=52.10 Aligned_cols=131 Identities=11% Similarity=0.010 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHH
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL 238 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (902)
-+|-.+|+.--|..-++.|..+|.+..+.+..+ +...++++|.-|| .+|..-|.++|+.-.+.- ..++.-...++..
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHH
Confidence 345555555555555666666666666655555 4445555555444 344555556655433321 1112223334445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 239 ILVSSDMASAEGILTMMSQAGLEPS--AQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 239 ~~~~g~~~~A~~l~~~m~~~g~~pd--~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
+...++-..|..+|+.....++.|| ...|..+|.-=..-|++..++++-+++..
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5555666666777777776655544 46788888877888888888877776543
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.63 E-value=0.021 Score=48.44 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=21.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILT 183 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~ 183 (902)
..+|.+.|++++|..+++. ...+ +.+....-.+..+|.+.|++++|+++|+
T Consensus 32 a~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4455555555555555544 1111 0111222223444555555555555544
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.42 E-value=3.2 Score=44.36 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC
Q psy767 265 QTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP 344 (902)
Q Consensus 265 ~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p 344 (902)
.++..+...+.+.|++++|.++|++....... ......
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~------------------------------------------~~l~~~ 193 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLE------------------------------------------NNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC------------------------------------------HCTTGH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc------------------------------------------ccccch
Confidence 34556677899999999999999985432211 111122
Q ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHcC-CCCCcc-c-----HHHHHHHHHHc--CChHHHHHHHHHccc
Q psy767 345 SAQ-TYTKLMCGYAKHGDMDSIRRLLAQNG-SSLVNG-D-----YLDIIHALAVS--GHGEYIDEIISKIQP 406 (902)
Q Consensus 345 ~~~-t~~~Li~~y~~~g~~~~A~~~~~~m~-~~~~~~-~-----~~~li~~~~~~--g~~~~A~~l~~~m~~ 406 (902)
+.. .|-..+-++...||+..|...|++.. ..|.-. + ...||.+|-.. ..+..++.-|+.+.+
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 222 23334446777899999999999843 322221 1 23456665432 234667777777655
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.36 E-value=0.18 Score=53.88 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHH-cCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ-DGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
.+|..+|+..-+.+..+.|..+|.+.++.+. -+..+|... ..+-.+ .++.+.|.+||+...+. ++.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~------A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAY------ALMEYYCNKDPKRARKIFERGLKK-FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHH------HHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHH------HHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHH
Confidence 5789999999999899999999999986432 123334333 333223 56777799999998765 56677889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSA----QTYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
..-++.+.+.|+.+.|..+|+..... .|.. ..|...+..=.+.|+++.+.++.+.+..
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999876 3344 4888888888899999998888877654
No 173
>KOG3060|consensus
Probab=95.30 E-value=3.2 Score=42.23 Aligned_cols=162 Identities=13% Similarity=0.082 Sum_probs=95.1
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
|..++-+....|+.+.|...++.+...- |.+.-...+ . .-.+-..|++++|.++++.+.+.+ |-|.++|--=
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~l---k--am~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRK 126 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKL---K--AMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRK 126 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHH---H--HHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHH
Confidence 5566666667777777777777776542 332211111 0 112234577777888887777776 5666666655
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHH---Hhc
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI---LVS 242 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~ 242 (902)
+-..-..|+.-+|++-+.+..+. +.-|...|..+-..|...|++++|.-.++++.-..+.... -+..+..++ ...
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l-~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL-YFQRLAEVLYTQGGA 204 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHhhH
Confidence 55555566666777777777665 3457777777777777777777777777777654332211 111222221 223
Q ss_pred CCHHHHHHHHHHHHH
Q psy767 243 SDMASAEGILTMMSQ 257 (902)
Q Consensus 243 g~~~~A~~l~~~m~~ 257 (902)
.+++.+.+.|....+
T Consensus 205 eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 205 ENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555666655554
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.29 E-value=0.55 Score=45.78 Aligned_cols=86 Identities=8% Similarity=-0.045 Sum_probs=60.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPI--SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA--- 205 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~--- 205 (902)
...+...|++++|...|+......-.+ ...+|..+-..|...|++++|+..|+...... .....++..+...+.
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhh
Confidence 667778899999999999886543222 23578888899999999999999999888752 223445666666666
Q ss_pred ----HcCChhHHHHHH
Q psy767 206 ----KHGDMDSIKTKI 217 (902)
Q Consensus 206 ----~~g~~~~a~~l~ 217 (902)
..|+++.|...+
T Consensus 121 ~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 121 EQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHcccHHHHHHHH
Confidence 555555554433
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.18 E-value=0.036 Score=47.01 Aligned_cols=80 Identities=19% Similarity=0.122 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChhHHH
Q psy767 137 DGNIEGATKILEFMRDKTF-PISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA-QTYTKLMCGYAKHGDMDSIK 214 (902)
Q Consensus 137 ~g~~~~A~~l~~~m~~~~~-~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~ll~a~~~~g~~~~a~ 214 (902)
.|+++.|..+++.+.+..- .++...+-.+..+|.+.|++++|+.+++. .+. .|+. .....+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5778888888888876542 12344555578888888888888888877 222 2222 34445567788888888888
Q ss_pred HHHHh
Q psy767 215 TKIPS 219 (902)
Q Consensus 215 ~l~~~ 219 (902)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87764
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.04 E-value=0.71 Score=45.19 Aligned_cols=82 Identities=11% Similarity=0.003 Sum_probs=62.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHc
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPIS--EGVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKH 207 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~ 207 (902)
...+...|++++|...|++....+-.+. ...|..+...+.+.|++++|...|.+.... .| +...+..+...+...
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 42 GMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHc
Confidence 7778889999999999998876432222 467888899999999999999999998876 34 345666666777777
Q ss_pred CChhHHH
Q psy767 208 GDMDSIK 214 (902)
Q Consensus 208 g~~~~a~ 214 (902)
|+...+.
T Consensus 120 g~~~~a~ 126 (172)
T PRK02603 120 GEKAEEA 126 (172)
T ss_pred CChHhHh
Confidence 7655443
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.96 E-value=6.7 Score=42.49 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 233 QLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287 (902)
Q Consensus 233 ~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf 287 (902)
.-.+.-+...|+...|.++-.+.. .||-.-|-..|.+|+..++|++-.++.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa 231 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFA 231 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 333444445666667776666665 567777777777777777776665543
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.89 E-value=0.11 Score=41.28 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=47.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
...+.+.|++++|.++|+...+.. +-+...|..+-.++.+.|++++|..+|++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788899999999999988876 557788888889999999999999999988765
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.81 E-value=1.8 Score=44.99 Aligned_cols=179 Identities=12% Similarity=0.006 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCCccc----HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH--HH
Q psy767 345 SAQTYTKLMCGYAKHGDMDSIRRLLAQNG-SSLVNGD----YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA--NH 417 (902)
Q Consensus 345 ~~~t~~~Li~~y~~~g~~~~A~~~~~~m~-~~~~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~ 417 (902)
+...+-.....+...|++++|...|++.. ..|..+. .-.++.++.+.++++.|...+++..+..+-.|+.- -+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 33333345556677999999999999853 3333322 23567888899999999999999988444445433 24
Q ss_pred HHHHHH--cC---------------C---HHHHHHHHHHHHhccCCCCCcccchh---hHHHhhhhcCCCCCccccchHH
Q psy767 418 IYHLIN--KG---------------Q---IDAAYRIVNTLARSANINGEQLPVGG---FLVRHMVKTNQPGVGYSADAAN 474 (902)
Q Consensus 418 i~~l~~--~g---------------~---~~~A~~~~~~m~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~ 474 (902)
+.+++. .+ + ..+|...|+.+.+.++-.+-.+..-. .+..++.+. -+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~----------e~~ 180 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY----------ELS 180 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH----------HHH
Confidence 555442 11 2 34677888888887654433322211 111111110 112
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLT 534 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~ 534 (902)
+..-|.+.|.+..|..-|+.+...-...+....+.-.++.+|...|. .++|......+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~-~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL-NAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC-hHHHHHHHHHHh
Confidence 33338899999999999999998765554455677788899999999 888888776654
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.57 E-value=0.48 Score=44.89 Aligned_cols=90 Identities=9% Similarity=-0.017 Sum_probs=75.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
-.-+...|++++|.++|+.....+ +-+..-|-.|--+|-..|++++|+..|........ -|...+-.+-.++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 555678999999999999988776 44566777888888889999999999999988764 3677888889999999999
Q ss_pred hHHHHHHHhccc
Q psy767 211 DSIKTKIPSLKP 222 (902)
Q Consensus 211 ~~a~~l~~~~~~ 222 (902)
+.|.+.|+....
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 999988886654
No 181
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.57 E-value=0.43 Score=43.82 Aligned_cols=87 Identities=9% Similarity=0.128 Sum_probs=69.0
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhh---------------hCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMR---------------DKTFPISEGVFNALIYGHSQANDMASAEGI 181 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~---------------~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l 181 (902)
|..++..+ |-++++.|+++....+++..- .....|+..+..+++.+|+..|++..|+++
T Consensus 1 de~~~~~i------i~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~ 74 (126)
T PF12921_consen 1 DEELLCNI------IYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKL 74 (126)
T ss_pred ChHHHHHH------HHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 45677778 999999999999999987752 123567888899999999999999999999
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHHcCC
Q psy767 182 LTMMSQA-GLEPSAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 182 ~~~M~~~-g~~pd~~ty~~ll~a~~~~g~ 209 (902)
.+...+. ++.-+..+|..|+.-+...-+
T Consensus 75 vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 75 VDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 9888654 677778889888886555443
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.46 E-value=0.93 Score=41.21 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=23.7
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHhcc
Q psy767 169 HSQANDMASAEGILTMMSQAGLEPS--AQTYTKLMCGYAKHGDMDSIKTKIPSLK 221 (902)
Q Consensus 169 ~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 221 (902)
+-..|+.++|+.+|++....|.... ...+..+-..+...|+.++|..+|+...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334455555555555544443322 1233334444444455555544444443
No 183
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.46 E-value=0.52 Score=43.27 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 193 SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMC 272 (902)
Q Consensus 193 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~ 272 (902)
|..++.++|.++++.|+++...++++..-.-+.......- . --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~-----------~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEG-----------D---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccC-----------c---------cCCCCCCCCCHHHHHHHHH
Confidence 4556777777777777777777777666543222111000 0 0112345899999999999
Q ss_pred HHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHH
Q psy767 273 GYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKL 352 (902)
Q Consensus 273 a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~L 352 (902)
+|+.+|++..|+++.+.. ....+++.+..+|..|
T Consensus 61 sf~~n~~i~~al~~vd~f----------------------------------------------s~~Y~I~i~~~~W~~L 94 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFF----------------------------------------------SRKYPIPIPKEFWRRL 94 (126)
T ss_pred HHHhcccHHHHHHHHHHH----------------------------------------------HHHcCCCCCHHHHHHH
Confidence 999999999999999873 5667777788888888
Q ss_pred HHHHHH
Q psy767 353 MCGYAK 358 (902)
Q Consensus 353 i~~y~~ 358 (902)
+.-...
T Consensus 95 l~W~~v 100 (126)
T PF12921_consen 95 LEWAYV 100 (126)
T ss_pred HHHHHH
Confidence 875443
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.39 E-value=7.4 Score=40.45 Aligned_cols=186 Identities=11% Similarity=0.019 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...+-.....+...|++++|.+.|+++...-..+ .....+. -.+..++.+.++++.|...|+...+..-.-....
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~---l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQ---LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 33333334455567899999999999998754332 2222111 1227788899999999999999876531112234
Q ss_pred HHHHHHHHHh--C---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcc
Q psy767 162 FNALIYGHSQ--A---------------ND---MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLK 221 (902)
Q Consensus 162 yn~Li~~~~~--~---------------g~---~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 221 (902)
|-..+.|.+. . .+ ..+|++.|+++++. -|++.- ..+|..-+..+.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~y-------------a~~A~~rl~~l~ 171 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQY-------------TTDATKRLVFLK 171 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChh-------------HHHHHHHHHHHH
Confidence 4444444442 1 11 23566666666665 344321 222222111111
Q ss_pred cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 222 PQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQA--GLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
.. ....-..+...|.+.|.+..|..-++.+.+. +-+......-.++.+|...|..++|..+...+
T Consensus 172 ~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 172 DR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 10 0001113445566778888888888888763 33444566778889999999999998877654
No 185
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.25 E-value=0.5 Score=52.32 Aligned_cols=91 Identities=10% Similarity=0.061 Sum_probs=72.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+...|+++.|...|+...+.+ +-+...|..+..+|.+.|++++|+..++...... ..+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445567899999999999988765 5567788888889999999999999999988763 22556777888888888888
Q ss_pred hHHHHHHHhcccC
Q psy767 211 DSIKTKIPSLKPQ 223 (902)
Q Consensus 211 ~~a~~l~~~~~~~ 223 (902)
++|...|+.....
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888776654
No 186
>KOG1538|consensus
Probab=94.21 E-value=1.8 Score=49.13 Aligned_cols=57 Identities=14% Similarity=0.287 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCc--hHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHH
Q psy767 84 SHYNALLRVYLDNEHT--FSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEF 149 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~--~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~ 149 (902)
..++..=++|.+-++. -+...-+++|+++|-.|+.... ...++-.|++.+|-++|.+
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---------A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---------ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---------HHHHHhhhhHHHHHHHHHH
Confidence 3455555666655443 2344445667777877877543 5556777888888777754
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.16 E-value=2.7 Score=48.93 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=99.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcC--------ChhHHHHHHH
Q psy767 153 KTFPISEGVFNALIYGHSQAN-----DMASAEGILTMMSQAGLEPSA-QTYTKLMCGYAKHG--------DMDSIKTKIP 218 (902)
Q Consensus 153 ~~~~p~~~~yn~Li~~~~~~g-----~~~~A~~l~~~M~~~g~~pd~-~ty~~ll~a~~~~g--------~~~~a~~l~~ 218 (902)
...+.|...|...+++..... ....|..+|++..+. .|+- ..|..+..++.... ++..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345678899999998865532 377999999999987 5664 35555444443321 1223334344
Q ss_pred hcccC-CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc-CCCC
Q psy767 219 SLKPQ-SELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS-SLVN 296 (902)
Q Consensus 219 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~-~~~~ 296 (902)
..... ....+...+..+.......|++++|...+++....+ |+...|..+...|...|+.++|.+.|++... .+..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33222 123344566666666677899999999999999875 6889999999999999999999999988544 3344
Q ss_pred CC
Q psy767 297 GD 298 (902)
Q Consensus 297 p~ 298 (902)
|+
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 44
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.07 E-value=2.2 Score=38.87 Aligned_cols=106 Identities=14% Similarity=0.027 Sum_probs=69.2
Q ss_pred HHHHHHHCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC----HHHH
Q psy767 89 LLRVYLDNEHTFSPTDFLAKLESQGIEPNR--VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS----EGVF 162 (902)
Q Consensus 89 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~y 162 (902)
+-.++-..|+.++|..+|++....|..... ..+-.+ -+.+...|++++|..+|+...... |+ ....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~l------astlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~ 78 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQL------ASTLRNLGRYDEALALLEEALEEF--PDDELNAALR 78 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHH
Confidence 344566678888899999888887766542 233344 677778889999988888776542 22 2222
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~ 206 (902)
..+.-++...|+.++|++.+-.... ++...|.--|..|+.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 3333466778888888888776554 234466666665543
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.99 E-value=0.19 Score=40.32 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=50.4
Q ss_pred HHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q psy767 94 LDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALI 166 (902)
Q Consensus 94 ~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li 166 (902)
.+.|++++|.++|+.+...... +...+..+ ..+|.+.|++++|..+++.+.... |+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l------a~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLL------AQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHH------HHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHHH
Confidence 5689999999999999876433 66666677 999999999999999999998764 5555555554
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.92 E-value=2.3 Score=49.50 Aligned_cols=140 Identities=11% Similarity=0.030 Sum_probs=97.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCC-----CchHHHHHHHHHHHCCCCCC-HHHHHHHHHhHHHHHHHHHc--------CCHHH
Q psy767 77 LDVPLDISHYNALLRVYLDNE-----HTFSPTDFLAKLESQGIEPN-RVTYQQLISNSKLISKYCQD--------GNIEG 142 (902)
Q Consensus 77 ~g~~pd~~~yn~li~~~~~~g-----~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~~~li~~~~~~--------g~~~~ 142 (902)
.+.+.|...|...+++..... ....|..+|++..+. .|+ ...|..+ ..++... .++..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~l------a~~~~~~~~~~~~~~~~l~~ 402 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEK------ALADIVRHSQQPLDEKQLAA 402 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHH------HHHHHHHHhcCCccHHHHHH
Confidence 345678899999999965432 266899999999865 555 3444443 2222211 12334
Q ss_pred HHHHHHHhhhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcc
Q psy767 143 ATKILEFMRDK-TFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLK 221 (902)
Q Consensus 143 A~~l~~~m~~~-~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 221 (902)
+.+..+..... ..+.+...|.++.-.+...|++++|...|++.... .|+...|..+...|...|+.++|...+....
T Consensus 403 a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 403 LSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444443332 23445577888776677789999999999999987 4788899999999999999999999888876
Q ss_pred cCCCc
Q psy767 222 PQSEL 226 (902)
Q Consensus 222 ~~~~~ 226 (902)
..++.
T Consensus 481 ~L~P~ 485 (517)
T PRK10153 481 NLRPG 485 (517)
T ss_pred hcCCC
Confidence 65444
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.44 E-value=0.18 Score=40.14 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=27.6
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCCCCccc-HHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 354 CGYAKHGDMDSIRRLLAQN-GSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 354 ~~y~~~g~~~~A~~~~~~m-~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
..+.+.|++++|...|++. ...|..+. |..+..++...|++++|.+.|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566666666666652 33333222 44555555566666666666665544
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.32 E-value=0.46 Score=38.70 Aligned_cols=63 Identities=17% Similarity=0.081 Sum_probs=51.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
-..|.+.++++.|.++++.+...+ |.+...|...-.++.+.|++++|...|+...+. .|+..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 456788899999999999988875 567778888888899999999999999988876 455444
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.24 E-value=0.37 Score=38.74 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=34.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAN-DMASAEGILTMMSQ 187 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g-~~~~A~~l~~~M~~ 187 (902)
-..+...|++++|+..|+...+.+ +-+...|..+-.+|.+.| ++++|++.|+...+
T Consensus 10 g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 10 GQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 556666666666666666665554 445556666666666666 56666666665544
No 194
>KOG3941|consensus
Probab=93.01 E-value=0.67 Score=47.41 Aligned_cols=90 Identities=12% Similarity=0.224 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHhHHHHHHHHH-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCC----------------
Q psy767 115 EPNRVTYQQLISNSKLISKYCQ-----DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAN---------------- 173 (902)
Q Consensus 115 ~pd~~t~~~ll~~~~li~~~~~-----~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g---------------- 173 (902)
+-|..+|-.. +..+.. .+.++-....+..|.+.|+.-|..+|+.||+.+-+..
T Consensus 64 ~RdK~sfl~~------V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~ 137 (406)
T KOG3941|consen 64 KRDKDSFLAA------VATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQ 137 (406)
T ss_pred cccHHHHHHH------HHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCch
Confidence 3355666666 655553 3556777777889999999999999999998875532
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 174 DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 174 ~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
+-+=+++++++|...|+.||..+-..|++++++.+..
T Consensus 138 QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 138 QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2356889999999999999999999999999887754
No 195
>KOG0553|consensus
Probab=92.84 E-value=1 Score=46.87 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=72.4
Q ss_pred HHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q psy767 93 YLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ 171 (902)
Q Consensus 93 ~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~ 171 (902)
..+.+++.+|+..|.+.++. .| |.+-|..- ..+|++.|.++.|.+=.+.....+ +--..+|..|-.+|..
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNR------AAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNR------AAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHH------HHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHc
Confidence 45678888888888888754 44 55556666 778888888888888777766655 3445678888888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMC 202 (902)
Q Consensus 172 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~ 202 (902)
.|++++|++.|+...+. .|+..+|-.=|.
T Consensus 162 ~gk~~~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred cCcHHHHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 88888888888877764 677776655443
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.76 E-value=0.17 Score=40.84 Aligned_cols=61 Identities=20% Similarity=0.146 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcC-ChHHHHHHHHHccc
Q psy767 346 AQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSG-HGEYIDEIISKIQP 406 (902)
Q Consensus 346 ~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g-~~~~A~~l~~~m~~ 406 (902)
..+|..+-..+...|++++|+..|.+ +...|..+. |..+..++...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 44556666666666666666666665 333333333 555666666666 46666666665543
No 197
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.51 E-value=2.6 Score=45.15 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=93.9
Q ss_pred HHHHHHHcCC-h----HHHHHHHHHcccCCCCCCCHHHHHHHHH--Hc-------CCHHHHHHHHHHHHhccCCCCCccc
Q psy767 384 IIHALAVSGH-G----EYIDEIISKIQPGVGYSADAANHIYHLI--NK-------GQIDAAYRIVNTLARSANINGEQLP 449 (902)
Q Consensus 384 li~~~~~~g~-~----~~A~~l~~~m~~~~g~~pd~~t~i~~l~--~~-------g~~~~A~~~~~~m~~~~~i~~~~~~ 449 (902)
+...++.++. + ++.+.+++.|.+ .|++-+.++++.++. .. -....|..+++.|++++..--...+
T Consensus 63 la~~l~~~~~~p~~~~~~~~~~y~~L~~-~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D 141 (297)
T PF13170_consen 63 LAALLDISFEDPEEAFKEVLDIYEKLKE-AGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED 141 (297)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH-hccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc
Confidence 3344444444 4 567788899998 899999998777664 22 3578899999999998765544332
Q ss_pred chhhHHHhhhhcCCCCCccccchHHHHHHHHhcCC----hHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCC-HH
Q psy767 450 VGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQ----IDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQP-ID 524 (902)
Q Consensus 450 ~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~----~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~-~~ 524 (902)
+ .++.+.+. ..+. .+.++.+++.+...+...++++.....++.-+-....+ ..
T Consensus 142 ~---------------------~~a~lLA~-~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~ 199 (297)
T PF13170_consen 142 Y---------------------PFAALLAM-TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVA 199 (297)
T ss_pred h---------------------hHHHHHhc-ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHH
Confidence 2 22333222 2222 45677888888887766665555444444333222220 34
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHH
Q psy767 525 KVLAVCHRLTDENLHPRAFNLAVLI 549 (902)
Q Consensus 525 ~A~~l~~~m~~~g~~Pd~~t~~~ll 549 (902)
++.++++.+.+.|+++...+|.++-
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHHH
Confidence 7899999999999999999987665
No 198
>KOG1920|consensus
Probab=92.36 E-value=24 Score=43.75 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=58.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHcCCCCCccc--HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHH
Q psy767 352 LMCGYAKHGDMDSIRRLLAQNGSSLVNGD--YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDA 429 (902)
Q Consensus 352 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~ 429 (902)
-+.+|..+|+|.+|+.+-.++....+..- -..|+..+...+++-+|-++..+... |..-.+..||+...|++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s------d~~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS------DPEEAVALLCKAKEWEE 1044 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc------CHHHHHHHHhhHhHHHH
Confidence 35677888888888888887655433322 24677888888888888888777654 22335677889999999
Q ss_pred HHHHHHHHHh
Q psy767 430 AYRIVNTLAR 439 (902)
Q Consensus 430 A~~~~~~m~~ 439 (902)
|..+-..-.+
T Consensus 1045 Alrva~~~~~ 1054 (1265)
T KOG1920|consen 1045 ALRVASKAKR 1054 (1265)
T ss_pred HHHHHHhccc
Confidence 9888765543
No 199
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.27 E-value=22 Score=39.49 Aligned_cols=457 Identities=13% Similarity=0.066 Sum_probs=223.9
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HH
Q psy767 135 CQDGNIEGATKILEFMRDKTFPIS------EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGY--AK 206 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~------~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~--~~ 206 (902)
-+.+++.+|.++|..+.+.- ..+ .+.-+-+|++|... +.+.....+.+..+. .| ...|..+..+. -+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 46789999999999886542 112 34456788888765 577777777777665 33 34555555543 45
Q ss_pred cCChhHHHHHHHhcccC--CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 207 HGDMDSIKTKIPSLKPQ--SELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 207 ~g~~~~a~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
.+.+++|.+.+..-... +..+..-..++ .+ .-+|..-=+..+..+...|.+.++.
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni------------------~~-----l~~df~l~~i~a~sLIe~g~f~EgR 148 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNI------------------QQ-----LFSDFFLDEIEAHSLIETGRFSEGR 148 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhH------------------HH-----HhhHHHHHHHHHHHHHhcCCcchHH
Confidence 67788887776655443 22211111000 00 1234444466777888889999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q psy767 285 RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDS 364 (902)
Q Consensus 285 ~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~ 364 (902)
.++++|... +.++....+..+|+.++-++++.=-++-
T Consensus 149 ~iLn~i~~~-------------------------------------------llkrE~~w~~d~yd~~vlmlsrSYfLEl 185 (549)
T PF07079_consen 149 AILNRIIER-------------------------------------------LLKRECEWNSDMYDRAVLMLSRSYFLEL 185 (549)
T ss_pred HHHHHHHHH-------------------------------------------HhhhhhcccHHHHHHHHHHHhHHHHHHH
Confidence 888876432 5556667788888887776666421111
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHcCChHH---------HHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHH
Q psy767 365 IRRLLAQNGSSLVNGDYLDIIHALAVSGHGEY---------IDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVN 435 (902)
Q Consensus 365 A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~---------A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~ 435 (902)
-+ -......|+|--||-.|.+.=+.-+ +.+++..+.+..-+.|-. +..--.++++
T Consensus 186 ----~e-~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e-----------~l~~~mq~l~ 249 (549)
T PF07079_consen 186 ----KE-SMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE-----------RLPPLMQILE 249 (549)
T ss_pred ----HH-hcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh-----------hccHHHHHHH
Confidence 11 1222355667777777664322211 122222221111122211 1111112222
Q ss_pred HHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCC--CCCccchHHHHH
Q psy767 436 TLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANI--NGEQLPVGGFLV 513 (902)
Q Consensus 436 ~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~--~~~~~~~~n~li 513 (902)
.. +++-+.|... . .+-.++..+.+ +.+++..+-+.+...... ...-...+..++
T Consensus 250 ~W-e~~yv~p~~~----L-----------------Vi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~L 305 (549)
T PF07079_consen 250 NW-ENFYVHPNYD----L-----------------VIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLL 305 (549)
T ss_pred HH-HhhccCCchh----H-----------------HHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 22 1122222210 0 01112222222 222222222222111100 001234677788
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHh-----cccccccCcchhhHhhhhhccCcchHHHHHHHHHH
Q psy767 514 RHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLI-KAH-----VLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQ 587 (902)
Q Consensus 514 ~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll-~a~-----~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~ 587 (902)
...++.+. ..+|-+.+.-+.. +.|+...-.-++ +-. +|..+ .+|.-+.....++.+...
T Consensus 306 s~~Vk~~~-T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD------------~~~Tklr~yL~lwe~~qs 370 (549)
T PF07079_consen 306 SFKVKQVQ-TEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDD------------ESYTKLRDYLNLWEEIQS 370 (549)
T ss_pred HHHHHHHh-HHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcch------------HHHHHHHHHHHHHHHHHh
Confidence 88888888 8888888887655 345433222221 000 02000 000011111224444443
Q ss_pred hhHHHhhhhhhhcccccccchhhhHHHH----Hhhh-HHHHHHHHHHHHHHhCCCCChHHHHHhhh---------ccCCC
Q psy767 588 AEDAACLQRITDLSTSIHGEVNSLYDLM----LSFL-DAEVLRILQVAEAEFGVGSNTETLRDYVL---------PVLSP 653 (902)
Q Consensus 588 ~g~~~~~~~~~~~~~~i~p~~~~~~~li----~~~~-~~~al~ll~~m~~~~g~~P~~~t~~~lv~---------~~~~~ 653 (902)
.. +.-.--.|++-... ..|. -+.|+++++.+ . .+.|....-.+.+. +...+
T Consensus 371 ~D------------iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i-l--~ft~yD~ec~n~v~~fvKq~Y~qaLs~~ 435 (549)
T PF07079_consen 371 YD------------IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI-L--QFTNYDIECENIVFLFVKQAYKQALSMH 435 (549)
T ss_pred hc------------ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH-H--HhccccHHHHHHHHHHHHHHHHHHHhhh
Confidence 32 11110011111111 2222 78899999988 3 34444222222221 11112
Q ss_pred CCCChHHHHHHHHhcCCCCccc----hHHHHHHH---HHhcCHHHHHHHHHHhhhhhchhhccchhhhhhhccCCchhHH
Q psy767 654 PNQVSGEVFSQLRSVGVTIGSI----TSAYVVHM---LRQHNLKEAALLAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLV 726 (902)
Q Consensus 654 ~~~~~~~~~~~l~~~g~~~~~~----~~~~l~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 726 (902)
.....-.+-..+.+.|++|..+ ..+++-.+ --+|++.++.--..-...-.+....++.+..+.....+++..-
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 3322334556777899999883 44444444 3677777776554443332334446667777788888888887
Q ss_pred HHHHHH
Q psy767 727 TVVRAV 732 (902)
Q Consensus 727 ~~~~~~ 732 (902)
..+..+
T Consensus 516 ~~l~~L 521 (549)
T PF07079_consen 516 EYLQKL 521 (549)
T ss_pred HHHHhC
Confidence 777665
No 200
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.13 E-value=8.2 Score=36.09 Aligned_cols=122 Identities=8% Similarity=-0.014 Sum_probs=82.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
|..+...+........++.+...+ +.+...+|.+|..|++.+ ..+..+.+.. ..+......+++.|.+.+.+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 888888899999999999988877 467789999999999874 4455555552 12444555688888888988
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNLLILV-SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 275 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~ 275 (902)
+++.-++..+.. +.-.+..+.. .++++.|.+.+.+ ..+...|..++..+.
T Consensus 86 ~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 888888877644 1112222222 2666666666654 225556666666554
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.04 E-value=1.5 Score=46.03 Aligned_cols=63 Identities=14% Similarity=-0.030 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q psy767 473 ANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE 536 (902)
Q Consensus 473 ~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~ 536 (902)
|.+...|...|++++|...|..+......++..+..+-.+...+...|+ .++|..+|++..+.
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~-~~~A~~~~~~vi~~ 246 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD-TAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 3455557888888888888888877654443344455555666667787 88888888887664
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=91.75 E-value=7.7 Score=37.61 Aligned_cols=118 Identities=9% Similarity=0.025 Sum_probs=59.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHc
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG---LEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g---~~pd~~ty~~ll~a~~~~ 207 (902)
..++.+.|+..+|...|++...--+.-|....-.+.++....+++..|...++.+-+.. -.|| +.-.+.+.+...
T Consensus 96 a~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~ 173 (251)
T COG4700 96 ANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhc
Confidence 55556666666666666655443334445555555555555566666666666555432 1222 223344555556
Q ss_pred CChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q psy767 208 GDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGIL 252 (902)
Q Consensus 208 g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~ 252 (902)
|...+|..-|+.....-+ .......+...+.+.|+.+++..-+
T Consensus 174 g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 174 GKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred CCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHH
Confidence 666656555555544322 2223333444455555555444433
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.69 E-value=3.1 Score=43.76 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC--CC
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNR----VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT--FP 156 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~ 156 (902)
...|+..+..+.+.|++++|...|+.+.+.- |+. ..+-.+ ...|...|++++|...|+.+...- -+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~L------G~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWL------GQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 3457776666677788999999998888653 332 234445 778888899999999998887532 12
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 157 ISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 157 p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 195 (902)
.....+-.+...+...|+.++|..+|+...+. .|+..
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 22344444566677888999999999888876 45543
No 204
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.69 E-value=3.2 Score=39.45 Aligned_cols=96 Identities=6% Similarity=-0.149 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
..-.+-.-+...|++++|..+|+-...-... +..-|-.| -.++-..|++++|...|......+ +-|...+-.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gL------G~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ 108 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRL------GECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHH------HHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 3344555567789999999999998865322 33344445 666677899999999999988877 467788888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 165 LIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 165 Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
+-.++...|+.+.|.+-|+.....
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 899999999999999999977654
No 205
>KOG3941|consensus
Probab=91.34 E-value=1.9 Score=44.32 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH--HHHHHHhcccCCCccch
Q psy767 157 ISEGVFNALIYGHSQ-----ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS--IKTKIPSLKPQSELFLC 229 (902)
Q Consensus 157 p~~~~yn~Li~~~~~-----~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~--a~~l~~~~~~~~~~~~~ 229 (902)
-|..+|-+++..+.. .+.++-....++.|.+-|++-|..+|..||+.+-+..-+-. ..++|-..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HY--------- 135 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHY--------- 135 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhC---------
Confidence 345666666666643 35677777788999999999999999999998776544331 11111111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q psy767 230 FSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 280 (902)
Q Consensus 230 ~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~ 280 (902)
-.+-+-+..++++|...|+.||-.+-..||+++.+.+..
T Consensus 136 ------------P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 136 ------------PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred ------------chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 123345789999999999999999999999999998874
No 206
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.24 E-value=3.1 Score=42.96 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=28.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
+...+...|++++|-.+|..+.......+..++..--|.....+.|. .++|...|.+..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~-~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN-TDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence 33445555555555555555444433333333444444444444454 4555555555443
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.63 E-value=1.2 Score=42.05 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhh-----hCCCCCCH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMR-----DKTFPISE 159 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~-----~~~~~p~~ 159 (902)
....++..+...|++++|..++..+.... +-|...|..+ |.+|...|+...|.++|+.+. +.|+.|+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~l------m~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLL------MRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHH------HHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHH------HHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 35566677778999999999999998753 3377889999 999999999999999999874 45888887
Q ss_pred HHH
Q psy767 160 GVF 162 (902)
Q Consensus 160 ~~y 162 (902)
.+-
T Consensus 137 ~~~ 139 (146)
T PF03704_consen 137 ETR 139 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.50 E-value=23 Score=36.46 Aligned_cols=180 Identities=12% Similarity=0.035 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccH-----HHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH--HHH
Q psy767 346 AQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDY-----LDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA--NHI 418 (902)
Q Consensus 346 ~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~i 418 (902)
...|+.- ..-.+.|++++|.+.|+.+...-.-..| ..++.++-+.++++.|+..+++..+..+-.||.- .+|
T Consensus 35 ~~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3444443 3456789999999999997543222222 3566677799999999999999988677777643 357
Q ss_pred HHHH-------HcCCH---HHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH--HHHHHHhcCChH
Q psy767 419 YHLI-------NKGQI---DAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN--HIYHLINKGQID 486 (902)
Q Consensus 419 ~~l~-------~~g~~---~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--li~~~~k~g~~~ 486 (902)
.+++ ...+. ..|..-|+.+..++.-++=.+++-..+.. -+..- .-.. +-.-|.+.|.+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~----~~d~L-----A~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVK----LNDAL-----AGHEMAIARYYLKRGAYV 184 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHH----HHHHH-----HHHHHHHHHHHHHhcChH
Confidence 7665 22333 44555555555554333222222111000 00000 0012 222378899999
Q ss_pred HHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q psy767 487 AAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE 536 (902)
Q Consensus 487 ~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~ 536 (902)
.|..-++.|.+.-..........-.+..+|-..|. .++|...-.-+...
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl-~~~a~~~~~vl~~N 233 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGL-TDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhc
Confidence 99999999998743332233455567777777787 67777666555543
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=90.17 E-value=22 Score=35.73 Aligned_cols=49 Identities=10% Similarity=-0.067 Sum_probs=33.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHH
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPID 524 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~ 524 (902)
+..-|.+.|.+..|..-++.+...-...+......-.++.++-+.|. .+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~-~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL-KQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC-hH
Confidence 34448899999999999999888743332233455667888888887 44
No 210
>KOG1130|consensus
Probab=89.67 E-value=6.7 Score=42.55 Aligned_cols=279 Identities=11% Similarity=-0.051 Sum_probs=140.2
Q ss_pred CCHHHHHHHHHH--HHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHH--hhhC--C
Q psy767 81 LDISHYNALLRV--YLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEF--MRDK--T 154 (902)
Q Consensus 81 pd~~~yn~li~~--~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~--m~~~--~ 154 (902)
.+...|..-+.+ +++.|+.+....+|+...+.|-. |..|.+++ ++.|-++|.-.+++++|++.... ...+ |
T Consensus 13 q~~SCleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAI--YsQLGNAyfyL~DY~kAl~yH~hDltlar~lg 89 (639)
T KOG1130|consen 13 QDRSCLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAI--YSQLGNAYFYLKDYEKALKYHTHDLTLARLLG 89 (639)
T ss_pred hhhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHH--HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc
Confidence 345566666655 78999999999999999988844 54444444 33337788888899999876432 1110 0
Q ss_pred CC-CCHHHHHHHHHHHHhCCCHHHHHHHH-HH---HHHCCC-CCCHHHHHHHHHHHHHcCChh-----------------
Q psy767 155 FP-ISEGVFNALIYGHSQANDMASAEGIL-TM---MSQAGL-EPSAQTYTKLMCGYAKHGDMD----------------- 211 (902)
Q Consensus 155 ~~-p~~~~yn~Li~~~~~~g~~~~A~~l~-~~---M~~~g~-~pd~~ty~~ll~a~~~~g~~~----------------- 211 (902)
-+ -...+...|-+.+--.|.+++|+-.- +. ..+.|- ......|..|-+.|...|+.-
T Consensus 90 dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~ 169 (639)
T KOG1130|consen 90 DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS 169 (639)
T ss_pred chhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence 00 00112222333333345555554321 11 112121 112334555566665554321
Q ss_pred ---HHHHHHHhccc----CCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHHcC
Q psy767 212 ---SIKTKIPSLKP----QSEL-FLCFSFQLTNLLILVSSDMASAEGILTMMSQ----AGLE-PSAQTYTKLMCGYAKHG 278 (902)
Q Consensus 212 ---~a~~l~~~~~~----~~~~-~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~----~g~~-pd~~ty~~LI~a~~~~g 278 (902)
.|.++|.+-.+ .+.. .....|..+...|...|+++.|....+.-.. .|-. ..-..+..|-+++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 11222211100 0000 0011122222222334666666655543221 2211 11234555666666667
Q ss_pred CHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcC-CCCCHHHHHHHHHHHH
Q psy767 279 DMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAG-LEPSAQTYTKLMCGYA 357 (902)
Q Consensus 279 ~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g-~~p~~~t~~~Li~~y~ 357 (902)
+++.|.+.|+.-. .. ..+.| -.....+..+|-.+|.
T Consensus 250 ~fe~A~ehYK~tl-----------~L--------------------------------Aielg~r~vEAQscYSLgNtyt 286 (639)
T KOG1130|consen 250 NFELAIEHYKLTL-----------NL--------------------------------AIELGNRTVEAQSCYSLGNTYT 286 (639)
T ss_pred ccHhHHHHHHHHH-----------HH--------------------------------HHHhcchhHHHHHHHHhhhHHH
Confidence 7777777666410 00 11111 1223455666777777
Q ss_pred HcCCHHHHHHHHHH-------cC-CCCCcccHHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 358 KHGDMDSIRRLLAQ-------NG-SSLVNGDYLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 358 ~~g~~~~A~~~~~~-------m~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
-..++++|+.++.+ +. ..+....|-+|..+|..-|..++|+.+...-.
T Consensus 287 ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 287 LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77888888888765 11 11222346678888888888888777665543
No 211
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.62 E-value=6.7 Score=41.13 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHc---CCHHHHHHHHHHhhhCCCCCC
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQD---GNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~---g~~~~A~~l~~~m~~~~~~p~ 158 (902)
|...|-.|-..|...|++..|..-|+...+.. .+|...+..+ ..++... ..-.++..+|+++...+ +-|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~------aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ 226 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGL------AEALYYQAGQQMTAKARALLRQALALD-PAN 226 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHH------HHHHHHhcCCcccHHHHHHHHHHHhcC-Ccc
Confidence 45556666666666666666666666555421 1123333333 2222221 22345556666665554 344
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 159 EGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
+.+-.-|-..+...|++.+|...++.|.+.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 445555555566666666666666666554
No 212
>KOG2796|consensus
Probab=89.45 E-value=28 Score=35.83 Aligned_cols=138 Identities=11% Similarity=0.016 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHH--
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNL-- 237 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~-- 237 (902)
.+.+++++.+.-.|.+.-...++++.++..-+-+......|.+.--+.||.+.|...|+..++.....+......+..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 455667777777788888888888888876566777777788888888888888888887766444433333322221
Q ss_pred ---HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC
Q psy767 238 ---LILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD 298 (902)
Q Consensus 238 ---~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~ 298 (902)
++.-+.++..|...+.+..... ..|...-|.-.-...-.|+..+|++..+.|......|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 2233677777888887777654 44555555544555567888999999999887766554
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.09 E-value=1.1 Score=37.09 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q psy767 195 QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS-AQTYTKLMCG 273 (902)
Q Consensus 195 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~LI~a 273 (902)
.+|+.+-..|...|++++|+..|++. .++.+.+.. -.|+ ..+++.+-..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~a----------------------------l~~~~~~~~--~~~~~a~~~~~lg~~ 55 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKA----------------------------LDIEEQLGD--DHPDTANTLNNLGEC 55 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH----------------------------HHHHHHTTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------HHHHHHHCC--CCHHHHHHHHHHHHH
Confidence 35667777777777777777776643 223222211 0232 5678888889
Q ss_pred HHHcCCHHHHHHHHHH
Q psy767 274 YAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 274 ~~~~g~~~~A~~lf~~ 289 (902)
|...|++++|++.|++
T Consensus 56 ~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 56 YYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHTTHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 9999999999999987
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=88.73 E-value=4.9 Score=44.83 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHhcccC
Q psy767 156 PISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA----QTYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 156 ~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 223 (902)
+.+...|+.+-.+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|...++...+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677888888888888888888888887776 4553 35888888888888888888888877663
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.71 E-value=33 Score=37.81 Aligned_cols=107 Identities=18% Similarity=0.051 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCC--CCC-HHHHHHHHHhHHHHHHHHH---cCCHHHHHHHHHHhhhC
Q psy767 80 PLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGI--EPN-RVTYQQLISNSKLISKYCQ---DGNIEGATKILEFMRDK 153 (902)
Q Consensus 80 ~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~--~pd-~~t~~~ll~~~~li~~~~~---~g~~~~A~~l~~~m~~~ 153 (902)
.+|++. .++-.|-...+++...++.+.|...-. .++ ...-... .-++-+ .|+-++|+.++..+...
T Consensus 140 s~div~--~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~y------afALnRrn~~gdre~Al~il~~~l~~ 211 (374)
T PF13281_consen 140 SPDIVI--NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQY------AFALNRRNKPGDREKALQILLPVLES 211 (374)
T ss_pred ChhHHH--HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHH------HHHHhhcccCCCHHHHHHHHHHHHhc
Confidence 344444 555568899999999999999986411 111 1111111 334556 89999999999996666
Q ss_pred CCCCCHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 154 TFPISEGVFNALIYGHSQ---------ANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 154 ~~~p~~~~yn~Li~~~~~---------~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
.-.++..+|..+.+.|-. ....++|+..|.+--+. .||..+
T Consensus 212 ~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~ 261 (374)
T PF13281_consen 212 DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYS 261 (374)
T ss_pred cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--Cccccc
Confidence 667888899888776632 12367777777765544 355443
No 216
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=88.63 E-value=25 Score=34.25 Aligned_cols=134 Identities=11% Similarity=-0.000 Sum_probs=101.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc-chhhH
Q psy767 154 TFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF-LCFSF 232 (902)
Q Consensus 154 ~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~-~~~~~ 232 (902)
...|++..--.|-.+....|+..+|...|.+...-=+.-|....-.+.++....++...+...++.+.+..... ++...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 45678888888999999999999999999998765456678888889999999999999999999987765332 34455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 233 QLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 233 ~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
-.+...+...|...+|+.-|+..... -|+...-..--..+.+.|+.+++..-+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 56677788899999999999998876 44444333333445667766666554443
No 217
>KOG2796|consensus
Probab=88.44 E-value=7.6 Score=39.71 Aligned_cols=160 Identities=9% Similarity=-0.047 Sum_probs=108.8
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHH
Q psy767 97 EHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMA 176 (902)
Q Consensus 97 g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~ 176 (902)
...+..+++|++=.. ..-+.+ +..+.-.|.+.-...++.+..+++-+.+...-..|.+.-.+.|+.+
T Consensus 163 ~~~ESsv~lW~KRl~-------~Vmy~~------~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k 229 (366)
T KOG2796|consen 163 LAEESSIRLWRKRLG-------RVMYSM------ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK 229 (366)
T ss_pred cchhhHHHHHHHHHH-------HHHHHH------HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH
Confidence 334667788876442 233445 6666667778778888888888776777888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q psy767 177 SAEGILTMMSQAGLEPSAQTYTKLM-----CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGI 251 (902)
Q Consensus 177 ~A~~l~~~M~~~g~~pd~~ty~~ll-----~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l 251 (902)
.|...|++..+..-..|..+++.++ ..|.-.+++..|...+.++...+.... ...+.-...+...|+..+|.+.
T Consensus 230 ~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~-~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 230 TAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA-VANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch-hhhchHHHHHHHHHHHHHHHHH
Confidence 9999999776554344555555443 345556778888888888877554322 2222222233347999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHH
Q psy767 252 LTMMSQAGLEPSAQTYTKLMC 272 (902)
Q Consensus 252 ~~~m~~~g~~pd~~ty~~LI~ 272 (902)
++.|... .|...+-++++-
T Consensus 309 ~e~~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 309 LEAMVQQ--DPRHYLHESVLF 327 (366)
T ss_pred HHHHhcc--CCccchhhhHHH
Confidence 9999876 566655555543
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=88.40 E-value=1.6 Score=35.97 Aligned_cols=63 Identities=17% Similarity=0.051 Sum_probs=47.7
Q ss_pred HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 119 VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK----T-FPIS-EGVFNALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 119 ~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~----~-~~p~-~~~yn~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
.+|+.+ -..|...|++++|+..|++..+. | -.|+ ..+++.+-.+|...|++++|+++|++..+
T Consensus 6 ~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNL------ARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHH------HHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346666 88999999999999999887532 1 1122 56788888999999999999999987653
No 219
>KOG1920|consensus
Probab=88.21 E-value=43 Score=41.68 Aligned_cols=116 Identities=12% Similarity=0.145 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHH----HHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCC-CCCCHHHH
Q psy767 343 EPSAQTYTKLMCGY----AKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVG-YSADAANH 417 (902)
Q Consensus 343 ~p~~~t~~~Li~~y----~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~pd~~t~ 417 (902)
.|+...+.....+| ...+.+++|--+|+..+. ..--+.+|..+|+|.+|+.+..++....+ +.-....+
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L 1005 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEEL 1005 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 55665555555444 455777777777775332 23456778888999999999888764100 11111235
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHH
Q psy767 418 IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTL 495 (902)
Q Consensus 418 i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m 495 (902)
..-+...++.-+|-++..+...+ .-..+..|++...|++|..+...-
T Consensus 1006 ~s~L~e~~kh~eAa~il~e~~sd-------------------------------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1006 VSRLVEQRKHYEAAKILLEYLSD-------------------------------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHcccchhHHHHHHHHhcC-------------------------------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 56666888888887777766543 234666677777888877665443
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=88.15 E-value=5.8 Score=44.24 Aligned_cols=67 Identities=9% Similarity=-0.072 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNR----VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK 153 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~ 153 (902)
-+.+...|+.+-.+|.+.|++++|+..|++..+. .|+. .+|..+ ..+|+..|++++|+..++...+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNL------Acaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNK------ACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778999999999999999999999998754 5553 357777 88999999999999999988775
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.32 E-value=51 Score=36.34 Aligned_cols=166 Identities=11% Similarity=0.079 Sum_probs=104.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKT---FPISEGVFNALIYGHSQ---ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGY 204 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~yn~Li~~~~~---~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~ 204 (902)
+-.|-...+++...++.+.|.... +.-+...--...-++-+ .|+.++|++++..+....-.++..||..+...|
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 556888899999999999997652 11112222233345556 899999999999976666678889999888776
Q ss_pred HHc---------CChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCC-H---HHHHHHH---H-HHHHCCC---CCCH
Q psy767 205 AKH---------GDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSD-M---ASAEGIL---T-MMSQAGL---EPSA 264 (902)
Q Consensus 205 ~~~---------g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~---~~A~~l~---~-~m~~~g~---~pd~ 264 (902)
... ...++|...+.+..... .......+....+. ..|. . .+..++- . .+.+.|. ..|.
T Consensus 228 KD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~Y~GIN~AtLL~-~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY 305 (374)
T PF13281_consen 228 KDLFLESNFTDRESLDKAIEWYRKGFEIE-PDYYSGINAATLLM-LAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY 305 (374)
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHcCC-ccccchHHHHHHHH-HcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence 532 23556777777665544 11112222222222 2232 1 1222222 2 2223443 4555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCH
Q psy767 265 QTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDY 299 (902)
Q Consensus 265 ~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~ 299 (902)
=.+.+++.++.-.|+.++|.+..++|... ..|.|
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l-~~~~W 339 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKL-KPPAW 339 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCcch
Confidence 66788999999999999999999998765 35554
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=87.31 E-value=30 Score=39.86 Aligned_cols=160 Identities=12% Similarity=0.065 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhC-CCCCC-----HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHH
Q psy767 128 SKLISKYCQDGNIEGATKILEFMRDK-TFPIS-----EGVFNALIYGHSQ----ANDMASAEGILTMMSQAGLEPSAQTY 197 (902)
Q Consensus 128 ~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~-----~~~yn~Li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty 197 (902)
..+++..+=.||-+.+++.+..-.+. ++.-. .-.|+.++..++- ....+.|.+++..+.+. -|+..-|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 44577777789999999888775543 23211 1345555555544 45778999999999987 7888777
Q ss_pred HHH-HHHHHHcCChhHHHHHHHhcccCCCccch---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 198 TKL-MCGYAKHGDMDSIKTKIPSLKPQSELFLC---FSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCG 273 (902)
Q Consensus 198 ~~l-l~a~~~~g~~~~a~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a 273 (902)
... -+.+...|++++|.+.|+........... ..+.-+...+....++++|...|..+.+.. ..+...|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 654 35567789999999999976643222211 222223333455899999999999998754 4555666655543
Q ss_pred -HHHcCCH-------HHHHHHHHHh
Q psy767 274 -YAKHGDM-------DSVRRLLAQS 290 (902)
Q Consensus 274 -~~~~g~~-------~~A~~lf~~m 290 (902)
|...|+. ++|.++|.+.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHH
Confidence 3456666 7888888874
No 223
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.20 E-value=39 Score=34.84 Aligned_cols=162 Identities=14% Similarity=0.059 Sum_probs=105.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHH
Q psy767 271 MCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYT 350 (902)
Q Consensus 271 I~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~ 350 (902)
...-.+.|++++|.+.|+.+...... -+-...+--
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~---------------------------------------------s~~~~qa~l 75 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPF---------------------------------------------SPYSEQAQL 75 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC---------------------------------------------CcccHHHHH
Confidence 33456889999999999986443211 111334555
Q ss_pred HHHHHHHHcCCHHHHHHHHHH-cCCCCCccc--HHHHHHHHHHcC-------ChH---HHHHHHHHcccC---CCCCCCH
Q psy767 351 KLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD--YLDIIHALAVSG-------HGE---YIDEIISKIQPG---VGYSADA 414 (902)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~--~~~li~~~~~~g-------~~~---~A~~l~~~m~~~---~g~~pd~ 414 (902)
.++-++-+.++++.|...+++ +...|..++ |...|.+++.-- +.. .|..-|+.+... ..+.||.
T Consensus 76 ~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA 155 (254)
T COG4105 76 DLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDA 155 (254)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhH
Confidence 677888899999999999988 666677766 777777776433 222 333333333331 4455554
Q ss_pred HH---------------HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHH
Q psy767 415 AN---------------HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHL 479 (902)
Q Consensus 415 ~t---------------~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~ 479 (902)
.. +-.-|.+.|.+..|..-++.|.+.+.-.+.... .+..+..+|
T Consensus 156 ~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~e---------------------aL~~l~eaY 214 (254)
T COG4105 156 KARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVRE---------------------ALARLEEAY 214 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHH---------------------HHHHHHHHH
Confidence 32 122345889999999999999987544333211 234466779
Q ss_pred HhcCChHHHHHHHHHHHHc
Q psy767 480 INKGQIDAAYRIVNTLARS 498 (902)
Q Consensus 480 ~k~g~~~~A~~l~~~m~~~ 498 (902)
...|-.++|.+.-.-+...
T Consensus 215 ~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 215 YALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHhCChHHHHHHHHHHHhc
Confidence 9999999998887766654
No 224
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.11 E-value=5.5 Score=41.81 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q psy767 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ-----AGLEPSAQTYTKLMC 202 (902)
Q Consensus 128 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~ty~~ll~ 202 (902)
..++..+..+|+++.+...++.+.... +-+...|..+|.+|.+.|+...|+..|+.+.. .|+.|...+......
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 556888889999999999999999887 77899999999999999999999999998865 589999888777666
Q ss_pred H
Q psy767 203 G 203 (902)
Q Consensus 203 a 203 (902)
.
T Consensus 236 ~ 236 (280)
T COG3629 236 I 236 (280)
T ss_pred H
Confidence 6
No 225
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.83 E-value=36 Score=36.47 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhccc
Q psy767 523 IDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLST 602 (902)
Q Consensus 523 ~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~ 602 (902)
+++.+.+++.|.+.|++-+..+|-+-.-. .........+ ..++. +.+ +++.|++.- .
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i--~~~~~~~~~~---~~~~r--a~~----iy~~mKk~H------------~ 134 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALII--LEEEEKEDYD---EIIQR--AKE----IYKEMKKKH------------P 134 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHH--HHhcccccHH---HHHHH--HHH----HHHHHHHhC------------c
Confidence 55678889999999999999888554311 2111222332 33333 555 999999886 3
Q ss_pred cc-ccchhhhHHHHHhhh------HHHHHHHHHHHHHHhCCCCC-hHHHHHhhhccCCCCC----CChHHHHHHHHhcCC
Q psy767 603 SI-HGEVNSLYDLMLSFL------DAEVLRILQVAEAEFGVGSN-TETLRDYVLPVLSPPN----QVSGEVFSQLRSVGV 670 (902)
Q Consensus 603 ~i-~p~~~~~~~li~~~~------~~~al~ll~~m~~~~g~~P~-~~t~~~lv~~~~~~~~----~~~~~~~~~l~~~g~ 670 (902)
.+ .++...+..++.... .+.+..+++.+ .+.|+..+ ..-+...+........ ....++.+.+++.|+
T Consensus 135 fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L-~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 135 FLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKL-ADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred cccCccchhHHHHHhcccccHHHHHHHHHHHHHHH-HHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 33 445556666663332 78888888888 78888766 3355555555555222 234568888999999
Q ss_pred CCccchHHHHHHHHHhcCHH-HHHHHHH
Q psy767 671 TIGSITSAYVVHMLRQHNLK-EAALLAK 697 (902)
Q Consensus 671 ~~~~~~~~~l~~~~~~g~~~-~a~~~~~ 697 (902)
++...+++.+--++-.+..+ +..+-+.
T Consensus 214 kik~~~yp~lGlLall~~~~~~~~~~i~ 241 (297)
T PF13170_consen 214 KIKYMHYPTLGLLALLEDPEEKIVEEIK 241 (297)
T ss_pred ccccccccHHHHHHhcCCchHHHHHHHH
Confidence 99998877766664333333 4433333
No 226
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.77 E-value=28 Score=33.53 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHhcccCCCccchh-hHHH--H
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ-TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCF-SFQL--T 235 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~-~~~~--~ 235 (902)
..|.+-++ +++.+..++|+.-|.++.+.|..--.+ .---+.......|+-..|...|+++-.....|... ...- .
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 44544444 355666777777777777665432111 11112334556677777777777776655444332 1111 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCC
Q psy767 236 NLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNG 297 (902)
Q Consensus 236 ~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p 297 (902)
..++...|.++++....+.+...|-+.-...-.+|--+-.+.|++.+|..+|.++......|
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22233467777777777766655544445555667777788899999999998876544333
No 227
>KOG2041|consensus
Probab=86.74 E-value=71 Score=37.40 Aligned_cols=88 Identities=15% Similarity=0.061 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh-CCCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy767 115 EPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD-KTFPI--------SEGVFNALIYGHSQANDMASAEGILTMM 185 (902)
Q Consensus 115 ~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~-~~~~p--------~~~~yn~Li~~~~~~g~~~~A~~l~~~M 185 (902)
.|....|..+ .......-.++-|+..|-+... .|++. +...-.+=|.+| -|.+++|+++|-+|
T Consensus 689 nPHprLWrll------Ae~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 689 NPHPRLWRLL------AEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDA 760 (1189)
T ss_pred CCchHHHHHH------HHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhcc
Confidence 5777778777 5555555555666655544322 12211 111112223333 48899999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHh
Q psy767 186 SQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPS 219 (902)
Q Consensus 186 ~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 219 (902)
.+++ ..|..+.+.|||-.+.++++.
T Consensus 761 drrD---------LAielr~klgDwfrV~qL~r~ 785 (1189)
T KOG2041|consen 761 DRRD---------LAIELRKKLGDWFRVYQLIRN 785 (1189)
T ss_pred chhh---------hhHHHHHhhhhHHHHHHHHHc
Confidence 7663 235667778888877666653
No 228
>KOG0553|consensus
Probab=86.65 E-value=5.8 Score=41.50 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=45.4
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHH
Q psy767 170 SQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASA 248 (902)
Q Consensus 170 ~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 248 (902)
.+.+++.+|+..|.+.++. .| |.+-|..=..+|.+.|.++.|.+=.+.....+.. ....|..+..++...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 3445555555555555543 22 3333334444555555555555444444332211 223444455555555555566
Q ss_pred HHHHHHHHHCCCCCCHHHHH
Q psy767 249 EGILTMMSQAGLEPSAQTYT 268 (902)
Q Consensus 249 ~~l~~~m~~~g~~pd~~ty~ 268 (902)
.+.|+..+. +.|+-.+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 555555544 356655553
No 229
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.46 E-value=46 Score=39.84 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=40.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCCCCCHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAND-------MASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~-------~~~A~~l~~~M~~~g~~pd~~ 195 (902)
|--|.|+|++++|.++....... .......+-..+..|+...+ -+....-|+...+.....|..
T Consensus 118 Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 118 IYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 67788999999999999655433 34455778888888877532 235555566665553333554
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.41 E-value=17 Score=41.29 Aligned_cols=155 Identities=12% Similarity=0.128 Sum_probs=87.4
Q ss_pred HHcCCHHHHHHHHH-HhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q psy767 135 CQDGNIEGATKILE-FMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSI 213 (902)
Q Consensus 135 ~~~g~~~~A~~l~~-~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a 213 (902)
.-.|+++.+.++.. .-.-..++ ....+.+++-+-+.|..+.|+.+-.+-..+ .....+.|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHH
Confidence 44577777665554 11111222 344677777777777777777765433221 2334456666655
Q ss_pred HHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 214 KTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
.++-+. ..+...|..|-....+.|+++-|.+.|.+
T Consensus 338 ~~~a~~-----------------------------------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k---- 372 (443)
T PF04053_consen 338 LEIAKE-----------------------------------------LDDPEKWKQLGDEALRQGNIELAEECYQK---- 372 (443)
T ss_dssp HHHCCC-----------------------------------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHH----
T ss_pred HHHHHh-----------------------------------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHh----
Confidence 554332 34667888888999999999999999887
Q ss_pred CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 294 LVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 294 ~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~ 371 (902)
..++..+.-++...|+.+.+..+..+. ...| -+|....++.-.|+++++.+++.+
T Consensus 373 --~~d~~~L~lLy~~~g~~~~L~kl~~~a---------------~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 373 --AKDFSGLLLLYSSTGDREKLSKLAKIA---------------EERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp --CT-HHHHHHHHHHCT-HHHHHHHHHHH---------------HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --hcCccccHHHHHHhCCHHHHHHHHHHH---------------HHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 346777777777777766665554432 1111 245556666667777777777665
No 231
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=86.18 E-value=4.1 Score=44.66 Aligned_cols=151 Identities=10% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccCCCCCCcCcccccCccccccCCCC-CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHH
Q psy767 43 VLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELD-VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY 121 (902)
Q Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g-~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 121 (902)
+++|...+....+...+..|+.+|-+... .| +.+++..|+++|..++. |++..|..+|+-=.. .+.-+..--
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-----~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~-~f~d~~~y~ 469 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRK-----EGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL-KFPDSTLYK 469 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhc-----cCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH-hCCCchHHH
Q ss_pred HHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q psy767 122 QQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS--EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTK 199 (902)
Q Consensus 122 ~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ 199 (902)
.-- +..+.+-++-+.|..+|+.-..+ +..+ ...|-.+|.-=..-|++..|..+=+.|.+. .|-..+-..
T Consensus 470 ~ky------l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 470 EKY------LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HHH------HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Q ss_pred HHHHHHHcCC
Q psy767 200 LMCGYAKHGD 209 (902)
Q Consensus 200 ll~a~~~~g~ 209 (902)
..+-|+-..+
T Consensus 541 F~Sry~ik~d 550 (660)
T COG5107 541 FTSRYAIKAD 550 (660)
T ss_pred HHHHHhhhcc
No 232
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=86.06 E-value=4.1 Score=32.94 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=40.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Q psy767 238 LILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSL 294 (902)
Q Consensus 238 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~ 294 (902)
++...++++.|.++++.+...+ +.+...|...-..|.+.|++++|.+.|+......
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4455667777777777777664 4566777778888888888888888888765443
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=85.58 E-value=4.2 Score=38.89 Aligned_cols=90 Identities=6% Similarity=-0.059 Sum_probs=69.3
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
.-+-..|++++|..+|..+.-.+ +-+..-|..|-.+|-..+++++|+..|......+. -|...+-..-.++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33457899999999999987766 34556677777888888999999999988766553 24555566678888999999
Q ss_pred HHHHHHHhcccC
Q psy767 212 SIKTKIPSLKPQ 223 (902)
Q Consensus 212 ~a~~l~~~~~~~ 223 (902)
.|...|......
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999988877663
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=85.57 E-value=26 Score=40.35 Aligned_cols=164 Identities=12% Similarity=0.046 Sum_probs=102.4
Q ss_pred HHHHHHCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHhHHHHHHHHH----cCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 90 LRVYLDNEHTFSPTDFLAKLESQG-IEPNRVTYQQLISNSKLISKYCQ----DGNIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 90 i~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~ll~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
+...+=.|+-+.+++.+.+-.+.+ +. ....--.|+.+...+..++- ..+.+.|.++++.+..+ -|+...|..
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 333344688888888887765532 22 12221222223333444443 56788999999999876 577777765
Q ss_pred HH-HHHHhCCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHH-HHHHH
Q psy767 165 LI-YGHSQANDMASAEGILTMMSQAGL---EPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQL-TNLLI 239 (902)
Q Consensus 165 Li-~~~~~~g~~~~A~~l~~~M~~~g~---~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~ 239 (902)
.- +.+...|++++|++.|+....... +.....+--+.-.+.-..+|++|...|..+.+.+.- +...|.. ....+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence 54 556678999999999997653211 122334445666688899999999999999885433 2223322 22223
Q ss_pred HhcCCH-------HHHHHHHHHHHH
Q psy767 240 LVSSDM-------ASAEGILTMMSQ 257 (902)
Q Consensus 240 ~~~g~~-------~~A~~l~~~m~~ 257 (902)
...|+. ++|..+|.+...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 446777 788888877664
No 235
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.40 E-value=36 Score=35.84 Aligned_cols=106 Identities=10% Similarity=-0.025 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHH
Q psy767 156 PISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLT 235 (902)
Q Consensus 156 ~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~ 235 (902)
|-|...|-.|-..|.+.|+++.|..-|....+.- .+|...+..+..++....+-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~------------------------- 206 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQ------------------------- 206 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCC-------------------------
Confidence 4466677777777777777777777777665542 22333444444443332211
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCC
Q psy767 236 NLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLV 295 (902)
Q Consensus 236 ~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~ 295 (902)
..-.++..+|+++.... +-|+.+-..|-..+...|++.+|...|+.|.....
T Consensus 207 -------~~ta~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 207 -------QMTAKARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred -------cccHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 11224555666665543 34455555566678888888888888888766543
No 236
>KOG2610|consensus
Probab=85.24 E-value=9.2 Score=40.45 Aligned_cols=153 Identities=11% Similarity=0.036 Sum_probs=98.6
Q ss_pred HCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH----HHHHHHH
Q psy767 95 DNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN----ALIYGHS 170 (902)
Q Consensus 95 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn----~Li~~~~ 170 (902)
-+|..-+|-..++++.+. .+-|...+... =++|...|+.+.-...++.+... ..||...|. ...-++.
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfs------h~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFS------HDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred ccccccHHHHHHHHHHHh-Cchhhhhhhhh------hhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHH
Confidence 357777777788887764 45577777777 78888888888888888877544 123333332 2333445
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCC---ccchhhHHHHHHHHHhcCCHHH
Q psy767 171 QANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSE---LFLCFSFQLTNLLILVSSDMAS 247 (902)
Q Consensus 171 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~ 247 (902)
.+|-+++|++.-++..+.+ +-|.-.-.++...+--.|+..++.++..+-...-. ..-...|-.....+...+.++.
T Consensus 187 E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 6788888888887776654 34666777777778888888888877665543211 1112222223333344588999
Q ss_pred HHHHHHHHH
Q psy767 248 AEGILTMMS 256 (902)
Q Consensus 248 A~~l~~~m~ 256 (902)
|+.+|+.-.
T Consensus 266 aleIyD~ei 274 (491)
T KOG2610|consen 266 ALEIYDREI 274 (491)
T ss_pred HHHHHHHHH
Confidence 999988544
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=85.17 E-value=32 Score=31.98 Aligned_cols=57 Identities=14% Similarity=0.009 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIP 218 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~ 218 (902)
.....+|..+...+.......+++.+...|. .+...++.++..|++... ......+.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~ 64 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLD 64 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHH
Confidence 3455788888888999999999999988874 677789999999998643 33444444
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.45 E-value=7.6 Score=44.15 Aligned_cols=127 Identities=14% Similarity=0.070 Sum_probs=68.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
+..+-+.|-.+.|+.+-..-.. =.....+.|+++.|.++-++ ..+...|..|-....+.|++
T Consensus 302 ~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 302 ARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBH
T ss_pred HHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCH
Confidence 5555566666666655433211 11223345555555554332 22455666666666666666
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
+-|.+.|.+... +..+..++...|+.+.-.++.+.....|- +|....++.-.|+.+++.+++.+-
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666666555443 44455555556666666666666665552 566666777778888888777764
No 239
>PTZ00036 glycogen synthase kinase; Provisional
Probab=84.40 E-value=1.6 Score=50.08 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=26.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+||..||.+|.++.++++||||+.++...
T Consensus 333 ~~L~~dP~~R~ta~e~l~hp~f~~~~~~~ 361 (440)
T PTZ00036 333 QFLKYEPLKRLNPIEALADPFFDDLRDPC 361 (440)
T ss_pred HHCCCChhHCcCHHHHhCChhHHhhhccc
Confidence 89999999999999999999999887643
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.78 E-value=7.3 Score=40.32 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=13.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARS 498 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~ 498 (902)
+.....+.|+.++|...|++....
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 334455556666666665555554
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=83.52 E-value=74 Score=34.80 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=13.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcc
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSA 499 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~ 499 (902)
.+...|..|+|+.|+++++.-....
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHH
Confidence 4444556666666666655554443
No 242
>KOG0550|consensus
Probab=81.97 E-value=88 Score=34.55 Aligned_cols=70 Identities=11% Similarity=-0.001 Sum_probs=40.1
Q ss_pred CCHHHHHHH-HHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHH--HcCChHHHHHHHHHcccCCCCCCCHHH
Q psy767 344 PSAQTYTKL-MCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALA--VSGHGEYIDEIISKIQPGVGYSADAAN 416 (902)
Q Consensus 344 p~~~t~~~L-i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~~g~~pd~~t 416 (902)
|.-.+|..| ..++.-.|++++|..+--.+.......-+..++.+.+ -.++.+.|...|++-.+ ..||...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~ 238 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQK 238 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhh
Confidence 444444444 3456677787777766544322212222444444433 45667888888888877 7787653
No 243
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.57 E-value=10 Score=37.22 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ--TYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~--ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
..+..+..-|++.|+.+.|++.|.++.+....|... .+-.+|..+...+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457778888888888888888888888765554433 556777888888888877776665543
No 244
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=81.38 E-value=43 Score=30.77 Aligned_cols=136 Identities=14% Similarity=0.170 Sum_probs=78.1
Q ss_pred HcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCC--CHHHHHHHHHHcCCHHHHHHHHH
Q psy767 358 KHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSA--DAANHIYHLINKGQIDAAYRIVN 435 (902)
Q Consensus 358 ~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p--d~~t~i~~l~~~g~~~~A~~~~~ 435 (902)
-.|.+++..++..+.-.......||.+|--....-+-+-..+.++.+-.-..+.| +..+++..+...|...
T Consensus 14 ldG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~s------- 86 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLS------- 86 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT----------
T ss_pred HhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchH-------
Confidence 3577777788877754433444467666666666666667777777655444444 2223444444444322
Q ss_pred HHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHH
Q psy767 436 TLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVR 514 (902)
Q Consensus 436 ~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~ 514 (902)
.+.. .+..+.+.|+-+.-.++...+.....+ ++...--+..
T Consensus 87 -----------------------------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~---~p~~L~kia~ 128 (161)
T PF09205_consen 87 -----------------------------------EYVDLALDILVKQGKKDQLDKIYNELKKNEEI---NPEFLVKIAN 128 (161)
T ss_dssp -----------------------------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S----HHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHhhccCC---CHHHHHHHHH
Confidence 1223 455577888888888888887653322 3445667788
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCC
Q psy767 515 HMVKTNQPIDKVLAVCHRLTDENLH 539 (902)
Q Consensus 515 ~~~~~g~~~~~A~~l~~~m~~~g~~ 539 (902)
+|.+.|. ..+|-+++.+.-+.|++
T Consensus 129 Ay~klg~-~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 129 AYKKLGN-TREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT--HHHHHHHHHHHHHTT-H
T ss_pred HHHHhcc-hhhHHHHHHHHHHhchH
Confidence 8999998 89999999988888864
No 245
>KOG0659|consensus
Probab=80.69 E-value=0.91 Score=46.38 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=28.8
Q ss_pred CCCCcchhhhHHHhhcCCCccCCCCCCCccchhhccc
Q psy767 853 LDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEIT 889 (902)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
+.+||-.|++|.|.++||||.+.+...+..+..++.+
T Consensus 265 ~~ynP~~Rita~qaL~~~yf~~~P~pt~~~~lp~p~~ 301 (318)
T KOG0659|consen 265 LTYNPKKRITASQALKHPYFKSLPLPTPPSKLPIPST 301 (318)
T ss_pred hccCchhcccHHHHhcchhhhcCCCCCChhhCcCCcc
Confidence 4678999999999999999999877776444444333
No 246
>KOG4555|consensus
Probab=80.14 E-value=19 Score=32.88 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=66.8
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHHcC
Q psy767 133 KYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA-GLEPSAQ---TYTKLMCGYAKHG 208 (902)
Q Consensus 133 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~---ty~~ll~a~~~~g 208 (902)
+++..|+++.|++.|.+....- |-....||.-..++.-.|+.++|++=+++..+. |-+ +.. .|.---..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 5678899999999999877653 556789999999999999999999999988765 322 222 2333334456677
Q ss_pred ChhHHHHHHHhcccCCCc
Q psy767 209 DMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 209 ~~~~a~~l~~~~~~~~~~ 226 (902)
+.+.|..=|+..-+-|..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777766554433
No 247
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.93 E-value=44 Score=31.38 Aligned_cols=115 Identities=11% Similarity=0.183 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCC-
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRV--TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTF- 155 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~--t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~- 155 (902)
+.++...|...|... ...|.+.+..++.. ..+.+ +.-.+..+++.....+++.+.--..
T Consensus 10 ~~~nL~~w~~fi~~~------------~~y~~~~~~~~~~k~~fiN~i------L~hl~~~~nf~~~v~~L~~l~~l~~~ 71 (145)
T PF13762_consen 10 VLANLEVWKTFINSH------------LPYMQEENASQSTKTIFINCI------LNHLASYQNFSGVVSILEHLHFLNTD 71 (145)
T ss_pred hhhhHHHHHHHHHHH------------HHHhhhcccChhHHHHHHHHH------HHHHHHccchHHHHHHHHHHHHhhHH
Confidence 556777777766543 23345455555543 34555 7777888889988888888743210
Q ss_pred ----CCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 156 ----PISEGVFNALIYGHSQAND-MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 156 ----~p~~~~yn~Li~~~~~~g~-~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
..+..+|++++++.++..- ---+..+|+-|++.+.+++..-|..+|.++.+....+
T Consensus 72 ~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 72 NIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 2355789999999987776 4567889999999899999999999999988764443
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.89 E-value=87 Score=33.22 Aligned_cols=160 Identities=16% Similarity=0.093 Sum_probs=95.6
Q ss_pred HHcCCHHHHHHHHHHhhhCC--CCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CCCCCH----
Q psy767 135 CQDGNIEGATKILEFMRDKT--FPISE------GVFNALIYGHSQANDMASAEGILTMMSQA--------GLEPSA---- 194 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~--~~p~~------~~yn~Li~~~~~~g~~~~A~~l~~~M~~~--------g~~pd~---- 194 (902)
.+.|+++.|..++.+..... ..|+. ..||.=...+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46899999999998876532 23332 34565555555554787777776654332 223443
Q ss_pred -HHHHHHHHHHHHcCChhH---HHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q psy767 195 -QTYTKLMCGYAKHGDMDS---IKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKL 270 (902)
Q Consensus 195 -~ty~~ll~a~~~~g~~~~---a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~L 270 (902)
.++..++.+|...+..+. |.++++.+...... ....+..-+.++.+.++.+.+.+++.+|...- ......+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 456677888888777664 55566666433222 23344455566666899999999999998752 2234455555
Q ss_pred HHHH---HHcCCHHHHHHHHHHhccCCCCC
Q psy767 271 MCGY---AKHGDMDSVRRLLAQSGSSLVNG 297 (902)
Q Consensus 271 I~a~---~~~g~~~~A~~lf~~m~~~~~~p 297 (902)
+..+ .... ...|...+..+......|
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHHHhCC
Confidence 5554 4433 345556665554443333
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=79.62 E-value=15 Score=38.72 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=63.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCccc
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEY 314 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~ 314 (902)
+...+..+|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++...
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~--------------------- 216 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT--------------------- 216 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH---------------------
Confidence 4445556788888888888888775 788999999999999999999999999986542
Q ss_pred HHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHH
Q psy767 315 IDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCG 355 (902)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~ 355 (902)
.+...|+.|...+.......
T Consensus 217 ---------------------~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 217 ---------------------LAEELGIDPAPELRALYEEI 236 (280)
T ss_pred ---------------------hhhhcCCCccHHHHHHHHHH
Confidence 26678888888877766655
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=78.79 E-value=54 Score=30.18 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=83.1
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCChhH
Q psy767 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT---YTKLMCGYAKHGDMDS 212 (902)
Q Consensus 136 ~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t---y~~ll~a~~~~g~~~~ 212 (902)
-.|.+++..++..+..... +..-||-+|--....-+-+-..++++..-. -.|... .-.++..|+..|...+
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---H
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchHH
Confidence 3577788888887766543 345566666655555555555555554432 233322 2345667777665543
Q ss_pred HHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 213 IKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 213 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
.+...+..+...|+-+.-.++++.+.+.+ .++....-.+-.||.+.|+..++-+++.+.-+
T Consensus 88 ------------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 ------------------YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ------------------HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33445566777899999999999988643 78888888999999999999999999999777
Q ss_pred CCCC
Q psy767 293 SLVN 296 (902)
Q Consensus 293 ~~~~ 296 (902)
.|+.
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 7654
No 251
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.40 E-value=1.2e+02 Score=33.97 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=77.9
Q ss_pred HHHHcCC-hHHHHHHHHHcccCCCCCCCHHH-------HHHH-HH---HcCCHHHHHHHHHHHHhccCCCCCcccchhhH
Q psy767 387 ALAVSGH-GEYIDEIISKIQPGVGYSADAAN-------HIYH-LI---NKGQIDAAYRIVNTLARSANINGEQLPVGGFL 454 (902)
Q Consensus 387 ~~~~~g~-~~~A~~l~~~m~~~~g~~pd~~t-------~i~~-l~---~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~ 454 (902)
-+-+.|. -++|+++++.+.. ++|..+. |+.- |. ....+.+-..+ +....+-|+.|....-
T Consensus 388 ~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkL-e~fi~e~gl~~i~i~e---- 459 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKL-EDFITEVGLTPITISE---- 459 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHhcCCCcccccH----
Confidence 3456666 6899999999988 7776543 1211 11 12222222222 2223344555443211
Q ss_pred HHhhhhcCCCCCccccchHH-HHHH--HHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHH
Q psy767 455 VRHMVKTNQPGVGYSADAAN-HIYH--LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCH 531 (902)
Q Consensus 455 ~~~~~~~~~~~~g~~~~~~~-li~~--~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~ 531 (902)
....| +-++ +...|++.++...-....+.. | ++.+|..+.-.+....+ .++|.+++.
T Consensus 460 ---------------~eian~LaDAEyLysqgey~kc~~ys~WL~~ia---P-S~~~~RLlGl~l~e~k~-Y~eA~~~l~ 519 (549)
T PF07079_consen 460 ---------------EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA---P-SPQAYRLLGLCLMENKR-YQEAWEYLQ 519 (549)
T ss_pred ---------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---C-cHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 12233 3333 678899999987766666542 2 67889988888888888 999999998
Q ss_pred HHHHCCCCCChhhHHHH
Q psy767 532 RLTDENLHPRAFNLAVL 548 (902)
Q Consensus 532 ~m~~~g~~Pd~~t~~~l 548 (902)
++ .|+..++++=
T Consensus 520 ~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 520 KL-----PPNERMRDSK 531 (549)
T ss_pred hC-----CCchhhHHHH
Confidence 75 5666665543
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=78.12 E-value=22 Score=33.27 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=54.3
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccC
Q psy767 421 LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSAN 500 (902)
Q Consensus 421 l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~ 500 (902)
..+.|++++|.+.|+.+...+.-.+-... .-..++.+|.+.|++++|...+++..+...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~q---------------------AqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQ---------------------AQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHH---------------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 45788888888888888887655544321 134577789999999999999999988765
Q ss_pred CCCCccchHHHHHHHHHHcC
Q psy767 501 INGEQLPVGGFLVRHMVKTN 520 (902)
Q Consensus 501 ~~~~~~~~~n~li~~~~~~g 520 (902)
.++. .-|-..+.|++...
T Consensus 79 ~hp~--vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 79 THPN--VDYAYYMRGLSYYE 96 (142)
T ss_pred CCCC--ccHHHHHHHHHHHH
Confidence 4433 34566666666533
No 253
>KOG1941|consensus
Probab=78.06 E-value=82 Score=34.08 Aligned_cols=226 Identities=11% Similarity=0.050 Sum_probs=118.1
Q ss_pred HCCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHH-------HHhhhCCCCCCHHHHHHH
Q psy767 95 DNEHTFSPTDFLAKLESQ--GIEPNRVTYQQLISNSKLISKYCQDGNIEGATKIL-------EFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 95 ~~g~~~~A~~l~~~M~~~--g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~-------~~m~~~~~~p~~~~yn~L 165 (902)
...+.++|+..|..-... ...-.-.+|..+ ..+.++.|.+++++..- .+..+... --..|-.+
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l------~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~--~~ea~lnl 89 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCL------VTAHSEMGRYKEMLKFAVSQIDTARELEDSDF--LLEAYLNL 89 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 456677777777665432 111112345555 88888888887765432 11111111 12445556
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCChhHHHHHHHhcccC-----CCccchhhHHHHH
Q psy767 166 IYGHSQANDMASAEGILTMMSQA-GLEPS---AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ-----SELFLCFSFQLTN 236 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~-g~~pd---~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-----~~~~~~~~~~~~~ 236 (902)
-+++-+--++.+++.+=..-... |..|. .....++-.++...+.++.+++.|+...+- +....-..+..+.
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 66666655666666554433221 32221 123344666777777788887777765431 2222334556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHH
Q psy767 237 LLILVSSDMASAEGILTMMSQ----AGLEPSAQTYTK-----LMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALA 307 (902)
Q Consensus 237 ~~~~~~g~~~~A~~l~~~m~~----~g~~pd~~ty~~-----LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~ 307 (902)
.++....++++|.-+.....+ .++.-=..-|.. |--++-..|.+.+|.+.-++.
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea----------------- 232 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEA----------------- 232 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHH-----------------
Confidence 666666666666554443322 121111111222 233444555555555555541
Q ss_pred HcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 308 VSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~ 371 (902)
.. .....|-.+ -......+.+.|...|+.|.|+.-|++
T Consensus 233 -----------~k---------------lal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 233 -----------MK---------------LALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred -----------HH---------------HHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 11 122333333 345566778889999999998888776
No 254
>KOG2610|consensus
Probab=77.71 E-value=61 Score=34.60 Aligned_cols=156 Identities=8% Similarity=0.064 Sum_probs=111.2
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHHcCCh
Q psy767 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTK----LMCGYAKHGDM 210 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~----ll~a~~~~g~~ 210 (902)
--.|+..+|-..|+.+.+. .|-|..+++..=++|.-.|+.+.-...++...-. ..||...|+. ..-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3468888888889998765 5788899999999999999999999999888654 1345433333 33345578999
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS---AQTYTKLMCGYAKHGDMDSVRRLL 287 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~ty~~LI~a~~~~g~~~~A~~lf 287 (902)
++|.+.-++..+.+ ..+.........++...|+..++.++..+-...--.-+ ..-|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988877754 34566777888888999999999888765543211111 112223333455669999999999
Q ss_pred HH-hccC
Q psy767 288 AQ-SGSS 293 (902)
Q Consensus 288 ~~-m~~~ 293 (902)
+. |.++
T Consensus 271 D~ei~k~ 277 (491)
T KOG2610|consen 271 DREIWKR 277 (491)
T ss_pred HHHHHHH
Confidence 85 4433
No 255
>KOG0660|consensus
Probab=77.33 E-value=1.3 Score=47.21 Aligned_cols=102 Identities=25% Similarity=0.343 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHH-HhhcC-cchhhHHHHHHHHHHhccccccccchHHHHhhhhhhhhHHHHHHHhhhhcCCCcccccCCC
Q psy767 762 IFAGNVLLDIYK-ATRQD-PNVVSHLEQLLNAFVEHAIPISAFSSDYIQNGLGSALTSDISKALGALTSDDLMPQPLQYV 839 (902)
Q Consensus 762 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 839 (902)
=-+|++|-+++. +.=-+ ...+++|..+++ --|-+ |+.....| ++.-.. ..+. .|.+.+.+.|
T Consensus 212 WSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~---~lGtP-~~e~l~~i----~s~~ar---~yi~-----slp~~p~~~f 275 (359)
T KOG0660|consen 212 WSVGCILAEMLTGKPLFPGKDYVHQLQLILE---LLGTP-SEEDLQKI----RSEKAR---PYIK-----SLPQIPKQPF 275 (359)
T ss_pred hhhhHHHHHHHcCCCCCCCCchHHHHHHHHH---hcCCC-CHHHHHHh----ccHHHH---HHHH-----hCCCCCCCCH
Confidence 468999999886 32222 444555544443 23333 33332222 222111 1222 2334444455
Q ss_pred CCCCCCCCCCC------CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 840 PSMFIPRGQPL------RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 840 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+..+ |...+. +=|..||-.|.+.|+.|+||||..++...+
T Consensus 276 ~~~f-p~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp~d 321 (359)
T KOG0660|consen 276 SSIF-PNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDPED 321 (359)
T ss_pred HHHc-CCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCCcc
Confidence 5444 222221 788999999999999999999999998776
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=77.01 E-value=1.4e+02 Score=34.09 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q psy767 345 SAQTYTKLMCGYAKHGDMDSIRRLLAQNG 373 (902)
Q Consensus 345 ~~~t~~~Li~~y~~~g~~~~A~~~~~~m~ 373 (902)
+..+...|+.++...+.+.++..++.+-.
T Consensus 294 ~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 294 NLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34466677778888888888887777753
No 257
>PRK15331 chaperone protein SicA; Provisional
Probab=76.52 E-value=25 Score=33.72 Aligned_cols=53 Identities=9% Similarity=-0.063 Sum_probs=29.5
Q ss_pred HHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 479 LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 479 ~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
+-..+.+++|...|...-.....+ +..+-.....+...|+ .+.|...|....+
T Consensus 81 ~Q~~k~y~~Ai~~Y~~A~~l~~~d---p~p~f~agqC~l~l~~-~~~A~~~f~~a~~ 133 (165)
T PRK15331 81 CQLKKQFQKACDLYAVAFTLLKND---YRPVFFTGQCQLLMRK-AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCC---CCccchHHHHHHHhCC-HHHHHHHHHHHHh
Confidence 445566777777666655543222 2223344555556666 6777776666554
No 258
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=76.52 E-value=76 Score=30.70 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=19.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy767 251 ILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRL 286 (902)
Q Consensus 251 l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~l 286 (902)
.++.+.+.|++|+...|..+|..+.+.|++.....+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444555566666666666666666654444333
No 259
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.89 E-value=12 Score=35.04 Aligned_cols=93 Identities=9% Similarity=0.150 Sum_probs=70.3
Q ss_pred CCCCCCCCHH--HHHHHHHHHHHCCCchHHHHHHHHHHHCCC-----CCCHHHHHHHHHhHHHHHHHHHcCC-HHHHHHH
Q psy767 75 GELDVPLDIS--HYNALLRVYLDNEHTFSPTDFLAKLESQGI-----EPNRVTYQQLISNSKLISKYCQDGN-IEGATKI 146 (902)
Q Consensus 75 ~~~g~~pd~~--~yn~li~~~~~~g~~~~A~~l~~~M~~~g~-----~pd~~t~~~ll~~~~li~~~~~~g~-~~~A~~l 146 (902)
++.+..+++. ..|+++.-.+..+.....+.+++.+..-.. .-+..+|.++ +.+.++... ---+..+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~i------f~SlsnSsSaK~~~~~L 102 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHII------FKSLSNSSSAKLTSLTL 102 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHH------HHHHccChHHHHHHHHH
Confidence 3445555654 478999998999999999998888753210 2245567788 888877666 4457889
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhCC
Q psy767 147 LEFMRDKTFPISEGVFNALIYGHSQAN 173 (902)
Q Consensus 147 ~~~m~~~~~~p~~~~yn~Li~~~~~~g 173 (902)
|..|++.+.+++...|..||.++.+.-
T Consensus 103 f~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 103 FNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 999999889999999999999987763
No 260
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=75.29 E-value=6.1 Score=27.04 Aligned_cols=26 Identities=19% Similarity=-0.021 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMS 186 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~ 186 (902)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777788888888888888887743
No 261
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.23 E-value=83 Score=30.48 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=93.8
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH-----HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHH
Q psy767 134 YCQDGNIEGATKILEFMRDKTFPISEGVFNAL-----IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM---CGYA 205 (902)
Q Consensus 134 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L-----i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll---~a~~ 205 (902)
+++.+..++|+.-|..+.+.|. -.|-.| -...+..|+...|...|.+.-...-.|-..-=..=+ -.+.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~----g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGY----GSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCC----CcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 4778999999999999998875 334333 244567899999999999998765555443111212 2356
Q ss_pred HcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q psy767 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEP 262 (902)
Q Consensus 206 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~p 262 (902)
..|.++....-.+-+-..+.+........+.....+.|++..|.+.|..+....-.|
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 789999988888888777777777777888888888999999999999988644334
No 262
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=75.02 E-value=95 Score=31.10 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=86.1
Q ss_pred HHHHHHHCCCchHHHHHHHHHHHCCCC-C-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC-CCCCHHHHHHH
Q psy767 89 LLRVYLDNEHTFSPTDFLAKLESQGIE-P-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT-FPISEGVFNAL 165 (902)
Q Consensus 89 li~~~~~~g~~~~A~~l~~~M~~~g~~-p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~yn~L 165 (902)
....+...|++.+|...|+.+...-.. | -....-.+ +.++-+.|+++.|...++.....- -.| ...+-..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~l------a~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y 83 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLML------AYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALY 83 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHH------HHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHH
Confidence 344456778888999998888764221 1 11223334 778888888988888888876532 111 1223333
Q ss_pred HHHHHhCC-------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhH
Q psy767 166 IYGHSQAN-------------DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSF 232 (902)
Q Consensus 166 i~~~~~~g-------------~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~ 232 (902)
+.|.+... ...+|...|+.+ +.-|=.+.-..+|...+..+... ....-
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l---------------i~~yP~S~y~~~A~~~l~~l~~~----la~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL---------------IKRYPNSEYAEEAKKRLAELRNR----LAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH---------------HHH-TTSTTHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHH---------------HHHCcCchHHHHHHHHHHHHHHH----HHHHH
Confidence 33332211 122333344433 33333334444443333333210 00111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHH
Q psy767 233 QLTNLLILVSSDMASAEGILTMMSQAGLEPSA----QTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 233 ~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~ty~~LI~a~~~~g~~~~A~ 284 (902)
..+...+.+.|.+..|..-++.+.+. -|++ ...-.|+.+|.+.|..+.|.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 22345566678888888888888765 3443 34566778888888877443
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.91 E-value=1.1e+02 Score=32.23 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=68.3
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q psy767 133 KYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS 212 (902)
Q Consensus 133 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~ 212 (902)
.....|++.+|..+|....... +-+...--.|+.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455666666666666655433 222344455666666666666666666666543211112221122333333333333
Q ss_pred HHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHH
Q psy767 213 IKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQA-GLEPSAQTYTKLMCGYAKHGDMDS 282 (902)
Q Consensus 213 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~ty~~LI~a~~~~g~~~~ 282 (902)
...+-...-.. +.+...-..+...+...|+.+.|.+.+-.+.++ ----|...-..|+..+.--|.-+.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 33333332221 112223333444445566666665544444332 123444555666666666664333
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.34 E-value=1.2e+02 Score=32.02 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=86.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCH
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDM 245 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 245 (902)
.......|++.+|..+|.......-. +...-..+..+|...|+.+.|..++..+..............-+.++......
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34567789999999999998876422 34566778899999999999999999987765444444433345555555444
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 246 ASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 246 ~~A~~l~~~m~~~g~~p-d~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
.+...+-...-. .| |...--.+-..|...|+.++|++.+-.+..
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444443 44 666677788888889999999888776543
No 265
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=74.24 E-value=1.4e+02 Score=32.73 Aligned_cols=285 Identities=13% Similarity=0.131 Sum_probs=160.6
Q ss_pred HHHHHHHHHHH--CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHH--HHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 85 HYNALLRVYLD--NEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKY--CQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 85 ~yn~li~~~~~--~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~--~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
-|.+|-.++.. .|+-..|.++-.+-.+. +.-|......+ +.+- .-.|+.+.|.+-|+-|...- .
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhl------LeAQaal~eG~~~~Ar~kfeAMl~dP-----E 151 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHL------LEAQAALLEGDYEDARKKFEAMLDDP-----E 151 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHH------HHHHHHHhcCchHHHHHHHHHHhcCh-----H
Confidence 35566666655 46666777666554321 33344444444 3332 34699999999999997532 2
Q ss_pred H----HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhh---H
Q psy767 161 V----FNALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFS---F 232 (902)
Q Consensus 161 ~----yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~---~ 232 (902)
+ ...|.-.--+.|..+.|..+-+..-.. .|. ...+.+++...|..|+|+.|+++++.-........... -
T Consensus 152 tRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r 229 (531)
T COG3898 152 TRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSR 229 (531)
T ss_pred HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHH
Confidence 2 233333445678888888888776654 444 35788899999999999999999987765433221111 1
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Q psy767 233 QLTNLLILV---SSDMASAEGILTMMSQAGLEPSAQTYTKL-MCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAV 308 (902)
Q Consensus 233 ~~~~~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~ty~~L-I~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~ 308 (902)
..++..-.. ..+...|...-.+.. .+.||.+--..+ -.++.+.|+..++-.+++.+.+...-|+... .+..
T Consensus 230 AvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~---lY~~ 304 (531)
T COG3898 230 AVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL---LYVR 304 (531)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH---HHHH
Confidence 111111111 234445554444433 346776554433 4688999999999999999888766665322 1222
Q ss_pred cCCc----ccHHHHHHHHHHhhhhhcccccchHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCcccHH
Q psy767 309 SGHG----EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGDYL 382 (902)
Q Consensus 309 ~~~~----~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~-~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~ 382 (902)
.... +.+..+..+ ..++|| ...-.++..+-...|++..|..--+. ....|....|.
T Consensus 305 ar~gdta~dRlkRa~~L------------------~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~l 366 (531)
T COG3898 305 ARSGDTALDRLKRAKKL------------------ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYL 366 (531)
T ss_pred hcCCCcHHHHHHHHHHH------------------HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHH
Confidence 2111 122222222 123343 34555555666666666665544433 22233333354
Q ss_pred HHHHHHHH-cCChHHHHHHHHHccc
Q psy767 383 DIIHALAV-SGHGEYIDEIISKIQP 406 (902)
Q Consensus 383 ~li~~~~~-~g~~~~A~~l~~~m~~ 406 (902)
.|.+.-.. .|+-.++...+.+-.+
T Consensus 367 LlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 367 LLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHhhccCchHHHHHHHHHHhc
Confidence 44444332 3666666666655544
No 266
>KOG0581|consensus
Probab=73.58 E-value=1.2 Score=47.59 Aligned_cols=29 Identities=41% Similarity=0.650 Sum_probs=26.3
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
.||++||-+|++.+||++|||+-.+....
T Consensus 317 ~CL~Kdp~~R~s~~qLl~Hpfi~~~~~~~ 345 (364)
T KOG0581|consen 317 CCLRKDPSERPSAKQLLQHPFIKKFEDPN 345 (364)
T ss_pred HHhcCCcccCCCHHHHhcCHHHhhccccc
Confidence 89999999999999999999998776544
No 267
>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an
Probab=73.45 E-value=1.4 Score=47.53 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.9
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+||+.||.+|.+++++++||||.++..
T Consensus 270 ~mL~~dp~~R~s~~~~l~h~~f~~~~~ 296 (303)
T cd07869 270 KLLQCFPKNRLSAQAALSHEYFSDLPP 296 (303)
T ss_pred HHhccCchhccCHHHHhcCcccccCCh
Confidence 789999999999999999999988754
No 268
>PRK11906 transcriptional regulator; Provisional
Probab=73.32 E-value=1.7e+02 Score=33.16 Aligned_cols=137 Identities=9% Similarity=0.110 Sum_probs=87.3
Q ss_pred HHH--HHHHHHHHHCC-----CchHHHHHHHHHHH-CCCCCCHHHHHHHHHhHHHHHHHH----HcCCHHHHHHHHHHhh
Q psy767 84 SHY--NALLRVYLDNE-----HTFSPTDFLAKLES-QGIEPNRVTYQQLISNSKLISKYC----QDGNIEGATKILEFMR 151 (902)
Q Consensus 84 ~~y--n~li~~~~~~g-----~~~~A~~l~~~M~~-~g~~pd~~t~~~ll~~~~li~~~~----~~g~~~~A~~l~~~m~ 151 (902)
..| ..++.|..... ..+.|+.+|.+... ..+.|+-..-..++.+..+...+. ...+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 66777766522 34568888888773 245665333222222111111111 1334566777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHhcccC
Q psy767 152 DKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ-TYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 152 ~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 223 (902)
+.+ +-|......+-.+....|+++.|..+|++.... .||.. +|...--.+.-.|+.++|.+.++...+.
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 776 667777777777778888899999999998876 56543 5655555666788888888888775543
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.14 E-value=79 Score=30.27 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=62.4
Q ss_pred HHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC
Q psy767 93 YLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA 172 (902)
Q Consensus 93 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~ 172 (902)
-.+.++.+++..++..|.-. .|.......+ -...+.+.|++.+|..+|+++.... |......+|+..|...
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~-----~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLF-----DGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHH-----HHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 34567888999999888743 5544333222 0334578899999999999986654 3444455555555544
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q psy767 173 NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIK 214 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~ 214 (902)
..-..=...=++..+.+-.|+. ..+++.+....+...|.
T Consensus 91 ~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 91 LGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAH 129 (160)
T ss_pred cCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchh
Confidence 3322223333445565433333 33445554444444433
No 270
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=73.12 E-value=93 Score=30.11 Aligned_cols=57 Identities=16% Similarity=0.104 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy767 381 YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLAR 439 (902)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~ 439 (902)
+..++..+...|++-+|+.+.+..... ..+....|+.+..+.++...=..+++-...
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~--~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV--DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc--ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777777777777777665331 233444566666666665554455444443
No 271
>KOG0666|consensus
Probab=72.42 E-value=1.6 Score=45.52 Aligned_cols=24 Identities=42% Similarity=0.868 Sum_probs=21.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCccC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNG 874 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~ 874 (902)
+=|++||..|.+|+|.++||||-.
T Consensus 319 klL~yDP~kRIta~qAleh~yF~~ 342 (438)
T KOG0666|consen 319 KLLTYDPIKRITAEQALEHPYFTE 342 (438)
T ss_pred HHhccCchhhccHHHHhccccccc
Confidence 567899999999999999999944
No 272
>KOG0579|consensus
Probab=72.21 E-value=1.9 Score=49.21 Aligned_cols=26 Identities=42% Similarity=0.727 Sum_probs=24.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
+||.++|-.||+..|+++||||.|..
T Consensus 271 ~cL~Knp~~Rp~aaqll~Hpfv~~~~ 296 (1187)
T KOG0579|consen 271 RCLVKNPRNRPPAAQLLKHPFVQNAP 296 (1187)
T ss_pred HHHhcCCccCCCHHHHhhCcccccCC
Confidence 99999999999999999999998764
No 273
>KOG1130|consensus
Probab=71.21 E-value=44 Score=36.59 Aligned_cols=91 Identities=12% Similarity=-0.012 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH----cCCCCCcc----cHHHHHHHHHHcCChHHHHHHHHHccc---CCCCCC---
Q psy767 347 QTYTKLMCGYAKHGDMDSIRRLLAQ----NGSSLVNG----DYLDIIHALAVSGHGEYIDEIISKIQP---GVGYSA--- 412 (902)
Q Consensus 347 ~t~~~Li~~y~~~g~~~~A~~~~~~----m~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~---~~g~~p--- 412 (902)
..|..|-..|.-.|+++.|+...+. -...++.. .+..+.+++.-.|+++.|.+.|+.-.. +.|-+.
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566666667777888888776554 11122222 256677777778888888887776432 011111
Q ss_pred -CHHHHHHHHHHcCCHHHHHHHHHHH
Q psy767 413 -DAANHIYHLINKGQIDAAYRIVNTL 437 (902)
Q Consensus 413 -d~~t~i~~l~~~g~~~~A~~~~~~m 437 (902)
..+++-..|.-...++.|+.++.+-
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 1123334444455566666666543
No 274
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=70.55 E-value=1.1e+02 Score=29.82 Aligned_cols=199 Identities=13% Similarity=-0.036 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHC-CCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQ-GIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
...+......+...+.+..+...+...... ........+... ...+...+++..+.+.+.........+ ...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 131 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNL------GLLLEALGKYEEALELLEKALALDPDP-DLA 131 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHH------HHHHHHHhhHHHHHHHHHHHHcCCCCc-chH
Confidence 456667777777777777777777776542 222334444445 566666777777777777766544222 122
Q ss_pred HHHHHH-HHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHH
Q psy767 162 FNALIY-GHSQANDMASAEGILTMMSQAGL--EPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL 238 (902)
Q Consensus 162 yn~Li~-~~~~~g~~~~A~~l~~~M~~~g~--~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (902)
...... .+...|+++.|...|........ ......+......+...++.+.+...+..............+..+...
T Consensus 132 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (291)
T COG0457 132 EALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211 (291)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHH
Confidence 222333 67777888888888887754211 112333444444456677777777777766654433233344444555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 239 ILVSSDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 239 ~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
+...+..+.|...+....... |+ ...+..+...+...+..+++...+.+.
T Consensus 212 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 212 YLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 555666777777777666542 22 334444444444555666666666653
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=70.37 E-value=85 Score=30.76 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=67.6
Q ss_pred HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCC
Q psy767 119 VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE--GVFNALIYGHSQANDMASAEGILTMMSQA---GLEPS 193 (902)
Q Consensus 119 ~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~~yn~Li~~~~~~g~~~~A~~l~~~M~~~---g~~pd 193 (902)
..+..+ ...|++.|+.+.|.+.|..+.+....+.. ..+-.+|....-.|++..+.....+.... |-.++
T Consensus 37 ~~~~~l------~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~ 110 (177)
T PF10602_consen 37 MALEDL------ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE 110 (177)
T ss_pred HHHHHH------HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH
Confidence 345666 99999999999999999999987655543 45778899999999999999988776543 22222
Q ss_pred HHHHHHHHH--HHHHcCChhHHHHHHHhccc
Q psy767 194 AQTYTKLMC--GYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 194 ~~ty~~ll~--a~~~~g~~~~a~~l~~~~~~ 222 (902)
...--.+.. ++...+++..|-+.|-....
T Consensus 111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 111 RRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 222112222 23345777777777766644
No 276
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=70.36 E-value=46 Score=31.15 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=62.0
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q psy767 471 DAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIK 550 (902)
Q Consensus 471 ~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~ 550 (902)
..|.--....+.|++++|.+.|+.+...-..++-...+---++.++.+.+. +++|+..+++..+..-.--..-|...+.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~-y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD-YEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 355555567789999999999999998865555555677789999999999 9999999999766532222366777776
Q ss_pred Hh
Q psy767 551 AH 552 (902)
Q Consensus 551 a~ 552 (902)
|+
T Consensus 91 gL 92 (142)
T PF13512_consen 91 GL 92 (142)
T ss_pred HH
Confidence 65
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=70.23 E-value=7.8 Score=26.49 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q psy767 349 YTKLMCGYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~~~~ 371 (902)
|+.|-..|.+.|++++|..+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555554
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=70.03 E-value=15 Score=26.39 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
+|..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555666666666666655554
No 279
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=69.94 E-value=16 Score=26.19 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=24.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 129 KLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 129 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
.+...|.+.|++++|.++|+...+.. |-|...|..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45667778888888888888877764 4455555544
No 280
>PTZ00284 protein kinase; Provisional
Probab=69.68 E-value=2.2 Score=49.45 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=25.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFE 878 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+||..||-+|.+++++++||||..+...
T Consensus 420 ~mL~~dP~~R~ta~e~L~Hp~~~~~~~~ 447 (467)
T PTZ00284 420 GLLHYDRQKRLNARQMTTHPYVLKYYPE 447 (467)
T ss_pred HhCCcChhhCCCHHHHhcCccccccCCc
Confidence 8999999999999999999999886553
No 281
>KOG0543|consensus
Probab=69.55 E-value=49 Score=36.36 Aligned_cols=89 Identities=10% Similarity=0.022 Sum_probs=44.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhh-----CCCCC---------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRD-----KTFPI---------SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~-----~~~~p---------~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
-+.|.+.|++..|..-|+.... .+..+ -..+++.|.-+|.+.+++..|+..-+.....+ .+|.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 4456788888888888777432 11111 12344555555555555555555555555443 223333
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhc
Q psy767 197 YTKLMCGYAKHGDMDSIKTKIPSL 220 (902)
Q Consensus 197 y~~ll~a~~~~g~~~~a~~l~~~~ 220 (902)
.--=-.+|...|+++.|+..|..+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 333334444444444444444433
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.42 E-value=71 Score=30.55 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=47.3
Q ss_pred HHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHH-HHcccCCCCCCCHHHHHHHHHHcCCHHHHHH
Q psy767 354 CGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEII-SKIQPGVGYSADAANHIYHLINKGQIDAAYR 432 (902)
Q Consensus 354 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~-~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~ 432 (902)
..+...|+|++|.++|+++........|..-+-++|-...-+-.+..+ +++.+ .+-.|+...++..+........|..
T Consensus 52 ~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~A~evle-~~~d~~a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 52 WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRYADEVLE-SGADPDARALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHHHHHHHh-cCCChHHHHHHHHHHHhccccchhh
Confidence 346789999999999999866654444554444444333333333333 33444 5567777777777766555554444
No 283
>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes
Probab=69.27 E-value=2 Score=45.70 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=21.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+||+.||.+|.+++++++||||
T Consensus 266 ~~L~~~P~~R~s~~~~l~hp~f 287 (287)
T cd07848 266 NLLKLNPTDRYLTEQCLNHPAF 287 (287)
T ss_pred HHccCCcccCCCHHHHhcCCCC
Confidence 8999999999999999999998
No 284
>PHA03209 serine/threonine kinase US3; Provisional
Probab=69.18 E-value=1.8 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=23.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (902)
+||+.||.+|.+++++++||||.++
T Consensus 333 ~mL~~dP~~Rpta~e~l~hp~f~~~ 357 (357)
T PHA03209 333 KMLTFDAAMRPSAEEILNYPMFAQL 357 (357)
T ss_pred HHHcCCcccCcCHHHHhcCchhccC
Confidence 8999999999999999999999864
No 285
>KOG4570|consensus
Probab=69.03 E-value=27 Score=36.83 Aligned_cols=104 Identities=14% Similarity=0.033 Sum_probs=76.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHC---CCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC
Q psy767 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQ---GIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK 153 (902)
Q Consensus 77 ~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~---g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~ 153 (902)
.|.+..+.+-..++..-....+++.+...+=.++.. ...|+...|. + +.. +-.-+.+.+..++..=.+.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~------irl-llky~pq~~i~~l~npIqY 129 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-W------IRL-LLKYDPQKAIYTLVNPIQY 129 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-H------HHH-HHccChHHHHHHHhCcchh
Confidence 355566667777777777777888888887777653 1333333332 1 333 3345677889888888899
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 154 TFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 154 ~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
|+-||..+++.+|+.+.+.+++.+|..+.-+|...
T Consensus 130 GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 130 GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988877655
No 286
>KOG1585|consensus
Probab=67.00 E-value=1.6e+02 Score=30.32 Aligned_cols=54 Identities=9% Similarity=0.060 Sum_probs=33.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHhcccccccCcchhhHhhhhh
Q psy767 512 LVRHMVKTNQPIDKVLAVCHRLTDEN---LHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQ 571 (902)
Q Consensus 512 li~~~~~~g~~~~~A~~l~~~m~~~g---~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~ 571 (902)
.|-.+....+ +..|...+++--+-+ -.-|..+...|+.++ ..|+.+++..++++
T Consensus 196 ~ilv~L~~~D-yv~aekc~r~~~qip~f~~sed~r~lenLL~ay-----d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 196 AILVYLYAHD-YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-----DEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHhhHHH-HHHHHHHhcchhcCccccChHHHHHHHHHHHHh-----ccCCHHHHHHHHcC
Confidence 3334444445 777888777743321 123567778888886 77888876666555
No 287
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=65.92 E-value=3.1 Score=45.80 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=26.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+||+.||-+|.+.+++++||||..+....
T Consensus 280 ~mL~~dp~~R~s~~ell~hp~~~~~~~~~ 308 (343)
T cd07878 280 KMLVLDSDKRISASEALAHPYFSQYHDPE 308 (343)
T ss_pred HHcCCChhhCCCHHHHhcCcchhccCCCc
Confidence 89999999999999999999998876554
No 288
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.47 E-value=6.3 Score=29.22 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHhccccccccchHHHHhhh
Q psy767 781 VVSHLEQLLNAFVEHAIPISAFSSDYIQNGL 811 (902)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (902)
.+++++.++++|++.|+.||+...+.+...+
T Consensus 17 lI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 17 LISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred ChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 4678999999999999999999988877654
No 289
>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p
Probab=65.30 E-value=2.4 Score=46.04 Aligned_cols=22 Identities=36% Similarity=0.869 Sum_probs=21.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
++|+.||.+|.+++++++||||
T Consensus 296 ~mL~~dP~~R~t~~e~l~hp~f 317 (317)
T cd07868 296 KLLTMDPIKRITSEQAMQDPYF 317 (317)
T ss_pred HHhccCcccCCCHHHHhcCCCC
Confidence 7899999999999999999998
No 290
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=64.22 E-value=39 Score=29.17 Aligned_cols=62 Identities=16% Similarity=0.100 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 140 IEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMC 202 (902)
Q Consensus 140 ~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~ 202 (902)
.=++.+-++.+...++.|+....++.+++|-|.+++..|.++|+-.+... ..+...|-.++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 33566667777778888888888888888888888888888888776331 123446666554
No 291
>KOG1941|consensus
Probab=64.02 E-value=1.7e+02 Score=31.83 Aligned_cols=129 Identities=9% Similarity=-0.045 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH-cCC--CCCccc-----HHHHHHHHHHcCChHHHHHHHHHccc-CCCCCCCHHH----
Q psy767 350 TKLMCGYAKHGDMDSIRRLLAQ-NGS--SLVNGD-----YLDIIHALAVSGHGEYIDEIISKIQP-GVGYSADAAN---- 416 (902)
Q Consensus 350 ~~Li~~y~~~g~~~~A~~~~~~-m~~--~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~-~~g~~pd~~t---- 416 (902)
.+|-.++.-.+.++++++.|+. |.. ..+.+. |..+...|.+-.++++|.-+..+..+ ...+..+.++
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3355566666677777777765 211 112222 67788888888888877655544322 0112222221
Q ss_pred ------HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHH
Q psy767 417 ------HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYR 490 (902)
Q Consensus 417 ------~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~ 490 (902)
+..+|-..|+..+|.+.-++..+..-+.++.+-.++ ....+-+.|-..|+.+.|+.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar------------------c~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR------------------CLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH------------------HHHHHHHHHHhcccHhHHHH
Confidence 233445778888888888776664322222211100 11123334777888888877
Q ss_pred HHHHHH
Q psy767 491 IVNTLA 496 (902)
Q Consensus 491 l~~~m~ 496 (902)
-++...
T Consensus 268 rYe~Am 273 (518)
T KOG1941|consen 268 RYEQAM 273 (518)
T ss_pred HHHHHH
Confidence 776544
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=64.01 E-value=2.2e+02 Score=30.96 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHcccCCCC-----CCCHH-HHHHHHHHcCCHHHHHHHHHHHHh
Q psy767 381 YLDIIHALAVSGHGEYIDEIISKIQPGVGY-----SADAA-NHIYHLINKGQIDAAYRIVNTLAR 439 (902)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~-----~pd~~-t~i~~l~~~g~~~~A~~~~~~m~~ 439 (902)
|..++..+.+.|+++.|...+..+.. ... .|... .....+-..|+..+|+..++....
T Consensus 149 ~l~~a~~aRk~g~~~~A~~~l~~~~~-~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 149 WLKFAKLARKAGNFQLALSALNRLFQ-LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhc-cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666554 111 12211 134445566666677666666555
No 293
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=62.25 E-value=17 Score=25.18 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 159 EGVFNALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
..+++.|...|...|++++|+.++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677788888888888888888877654
No 294
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=62.17 E-value=3.4 Score=45.46 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=27.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+||+.||.+|.+.+++++||||..++...+
T Consensus 279 ~~l~~dP~~R~~~~e~l~h~~f~~~~~~~~ 308 (342)
T cd07879 279 KMLELDVDKRLTATEALEHPYFDSFRDADE 308 (342)
T ss_pred HHcCCChhhCcCHHHHhcCcchhhcccccc
Confidence 899999999999999999999999986554
No 295
>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl
Probab=61.80 E-value=3.5 Score=44.29 Aligned_cols=29 Identities=24% Similarity=0.482 Sum_probs=26.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+||+.||.+|.+++++++||||.++.+..
T Consensus 268 ~ml~~dp~~R~t~~eil~h~~f~~~~~~~ 296 (301)
T cd07873 268 KLLQFEGRKRISAEEAMKHPYFHCLGERI 296 (301)
T ss_pred HHhcCCcccCcCHHHHhcCcccccccchh
Confidence 89999999999999999999998887543
No 296
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=61.71 E-value=37 Score=29.63 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=43.9
Q ss_pred HHHHcCCHH--HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 133 KYCQDGNIE--GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMC 202 (902)
Q Consensus 133 ~~~~~g~~~--~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~ 202 (902)
.|....+.+ +..+-++.+...++.|+.....+.+++|.|.+++..|.++|+-.+..- .+....|..++.
T Consensus 17 ~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 17 KYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 344444433 456667777788888999999999999999999999999998886541 222226766654
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.68 E-value=1.2e+02 Score=28.71 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=37.1
Q ss_pred HHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHH-HHcccCCCCCCCHHHHHHHH
Q psy767 355 GYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEII-SKIQPGVGYSADAANHIYHL 421 (902)
Q Consensus 355 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~-~~m~~~~g~~pd~~t~i~~l 421 (902)
.+...|+|++|.++|++.........|..-+.++|-...-+-.+..+ ..+.. .+-.|+...++.++
T Consensus 53 l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A~~~le-~~~~~~a~~Lv~al 119 (153)
T TIGR02561 53 LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHADEVLA-RDADADAVALVRAL 119 (153)
T ss_pred HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCHhHHHHHHHH
Confidence 36778999999999999877766656655555544333322222222 12223 44455555444444
No 298
>KOG0550|consensus
Probab=61.39 E-value=2.7e+02 Score=31.01 Aligned_cols=169 Identities=8% Similarity=-0.114 Sum_probs=89.6
Q ss_pred hcHHHHHHHhccccchhHHHHHHHHHHHhc--ccCCCCCCcCcccccCccccccCCCCCCCCHHHHH-------------
Q psy767 23 EATAEVTTVLGALGAFLVLLVLLFVYLNSK--WCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYN------------- 87 (902)
Q Consensus 23 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn------------- 87 (902)
+++++|.+.-..+-.....|. +...+++ +--.++.+.|..-|.+.+. +.||-..--
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~-------ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNA--EALYVRGLCLYYNDNADKAINHFQQALR-------LDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred ccchhHHHHHHHHHhcccchh--HHHHhcccccccccchHHHHHHHhhhhc-------cChhhhhHHhHhhhHHHHHHHH
Confidence 566666655444433333332 2223333 2334556666666666665 334433211
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHHC---CCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 88 ALLRVYLDNEHTFSPTDFLAKLESQ---GIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 88 ~li~~~~~~g~~~~A~~l~~~M~~~---g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
.=-.-..+.|.+..|.+.|.+.+.. +..|+.-.|-.. ..+..+.|+..+|+.--+.....+- ...+-.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr------a~v~~rLgrl~eaisdc~~Al~iD~---syikal 324 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR------ALVNIRLGRLREAISDCNEALKIDS---SYIKAL 324 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh------HhhhcccCCchhhhhhhhhhhhcCH---HHHHHH
Confidence 1122234678888898888887742 233344444444 5566778888888888777665541 122222
Q ss_pred HH--HHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q psy767 165 LI--YGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGD 209 (902)
Q Consensus 165 Li--~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~ 209 (902)
+. .++.-.++|++|.+-|+...+..-.+. ..|+.-...++-+..+
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 22 333345678888888877765532222 2344444444444433
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.29 E-value=1.5e+02 Score=28.05 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHhccCCCC
Q psy767 242 SSDMASAEGILTMMSQAGLEPSAQTYTKL-MCGYAKHGDMDSVRRLLAQSGSSLVN 296 (902)
Q Consensus 242 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~L-I~a~~~~g~~~~A~~lf~~m~~~~~~ 296 (902)
.++.+++..++..|.-. .|+..-...+ ...+...|++++|..+|++....+..
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 56666777777766543 4443332222 23467889999999999997766544
No 300
>PHA03211 serine/threonine kinase US3; Provisional
Probab=61.13 E-value=3.5 Score=47.44 Aligned_cols=24 Identities=46% Similarity=0.595 Sum_probs=23.1
Q ss_pred CCCCCCcchhhhHHHhhcCCCccC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNG 874 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~ 874 (902)
+||+.||.+|.+++++|+||||++
T Consensus 437 ~mL~~DP~~RPsa~elL~hp~f~~ 460 (461)
T PHA03211 437 RALTFDGARRPSAAELLRLPLFQS 460 (461)
T ss_pred HHcccChhhCcCHHHHhhCcccCC
Confidence 899999999999999999999976
No 301
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=61.06 E-value=83 Score=36.70 Aligned_cols=86 Identities=15% Similarity=0.295 Sum_probs=62.9
Q ss_pred CccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHH--HHHHHHH-HHHCCCCCCh
Q psy767 466 VGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDK--VLAVCHR-LTDENLHPRA 542 (902)
Q Consensus 466 ~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~--A~~l~~~-m~~~g~~Pd~ 542 (902)
..|...+.+++.+|...|++..+.++++.....+.-...-...||..|+.+.+.|. ++- ...-.++ +...-+.-|.
T Consensus 25 ls~~~~~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s-f~l~~~~~~~~~~lq~a~ln~d~ 103 (1117)
T COG5108 25 LSYKSGTASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS-FELTDVLSNAKELLQQARLNGDS 103 (1117)
T ss_pred chhccchHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHhhcCCcc
Confidence 44555677899999999999999999999887654333345689999999999885 332 2222222 3444588899
Q ss_pred hhHHHHHHHh
Q psy767 543 FNLAVLIKAH 552 (902)
Q Consensus 543 ~t~~~ll~a~ 552 (902)
.||..|+.+.
T Consensus 104 ~t~all~~~s 113 (1117)
T COG5108 104 LTYALLCQAS 113 (1117)
T ss_pred hHHHHHHHhh
Confidence 9999999876
No 302
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=59.73 E-value=4.6 Score=44.88 Aligned_cols=29 Identities=38% Similarity=0.587 Sum_probs=25.9
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+||..||-+|.+++++++||||+...+..
T Consensus 300 ~mL~~dP~~R~t~~e~L~hp~~~~~~~~~ 328 (364)
T cd07875 300 KMLVIDASKRISVDEALQHPYINVWYDPS 328 (364)
T ss_pred HhcCcCcccCCCHHHHhcCcccccccCcc
Confidence 89999999999999999999998765544
No 303
>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as
Probab=58.94 E-value=3.9 Score=44.27 Aligned_cols=22 Identities=41% Similarity=0.825 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+||+.||.+|.+++++++||||
T Consensus 296 ~~l~~dP~~R~t~~e~l~hp~f 317 (317)
T cd07867 296 KLLTMDPTKRITSEQALQDPYF 317 (317)
T ss_pred HHhccCcccccCHHHHhcCCCC
Confidence 7999999999999999999998
No 304
>KOG0596|consensus
Probab=58.93 E-value=4.2 Score=45.98 Aligned_cols=26 Identities=42% Similarity=0.912 Sum_probs=23.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
.||.-||-.||+|..||+|||.--+.
T Consensus 609 ~CL~rdPkkR~si~eLLqhpFl~~~~ 634 (677)
T KOG0596|consen 609 CCLARDPKKRWSIPELLQHPFLQIQP 634 (677)
T ss_pred HHHhcCcccCCCcHHHhcCccccccc
Confidence 89999999999999999999986543
No 305
>KOG0276|consensus
Probab=58.79 E-value=1.6e+02 Score=34.29 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q psy767 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGI 251 (902)
Q Consensus 172 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l 251 (902)
.|+++.|.++..+.. +..-|..|-.+....+++..|.+.|..... +..++.++...|+.+....+
T Consensus 650 lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 650 LGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred cCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 344555544443321 344455555555555555555554444332 22333344444444444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 252 LTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 252 ~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
-....+.|. .|.-.-+|...|+++++++++.+-
T Consensus 715 a~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 715 ASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 444444441 233345667778888888887764
No 306
>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament
Probab=58.42 E-value=4.6 Score=43.12 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=21.3
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
++|+.||.+|.+++++++||||
T Consensus 267 ~mL~~dp~~R~t~~~~l~hp~f 288 (288)
T cd07871 267 SLLLYETKSRISAEAALRHSYF 288 (288)
T ss_pred HhcCcCcccCCCHHHHhcCCCC
Confidence 7899999999999999999998
No 307
>KOG1167|consensus
Probab=58.27 E-value=4.4 Score=44.21 Aligned_cols=29 Identities=28% Similarity=0.697 Sum_probs=25.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+||..||-.|.+.|..|+||||+-..+..
T Consensus 363 k~le~np~kRitAEeALkHpFF~~~~~~~ 391 (418)
T KOG1167|consen 363 KCLELNPQKRITAEDALKHPFFDEADRTE 391 (418)
T ss_pred HHccCChhhcccHHHHhcCcCCcchhhhh
Confidence 99999999999999999999998544443
No 308
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=58.14 E-value=3.5 Score=38.74 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=22.8
Q ss_pred HHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHH
Q psy767 90 LRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILE 148 (902)
Q Consensus 90 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~ 148 (902)
|..+.+.+.+.....+++.+...+..-+....+.+ +..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L------~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLL------LELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHH------HHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHH------HHHHHhcCCchHHHHHcc
Confidence 33444444444444555554443333334444444 555555444444444433
No 309
>KOG4555|consensus
Probab=57.68 E-value=1.6e+02 Score=27.18 Aligned_cols=92 Identities=10% Similarity=-0.013 Sum_probs=68.4
Q ss_pred HHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH---HH
Q psy767 91 RVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL---IY 167 (902)
Q Consensus 91 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L---i~ 167 (902)
-+++..|+.+.|++.|.+....- +-+...||.- ..++--.|+.++|+.=+++..+..-.-+...+.+. -.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNR------AQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNR------AQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccH------HHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 35678999999999999987542 2366779998 99999999999999988887664322233333332 34
Q ss_pred HHHhCCCHHHHHHHHHHHHHCC
Q psy767 168 GHSQANDMASAEGILTMMSQAG 189 (902)
Q Consensus 168 ~~~~~g~~~~A~~l~~~M~~~g 189 (902)
.|...|+.+.|..=|+..-+.|
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhC
Confidence 5667789999999998887776
No 310
>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha. Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype
Probab=57.50 E-value=3.2 Score=45.36 Aligned_cols=26 Identities=35% Similarity=0.673 Sum_probs=24.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
+|++.||.+|.+.+++++||||..+.
T Consensus 289 ~~l~~dP~~Rpt~~ell~~p~f~~~~ 314 (327)
T cd08227 289 QCLQRNPDARPSASTLLNHSFFKQIK 314 (327)
T ss_pred HHHhhCchhcCCHHHHhcChhhhhcc
Confidence 89999999999999999999998764
No 311
>KOG4570|consensus
Probab=57.37 E-value=72 Score=33.81 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 244 DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 244 ~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
+.+.+..++..=+..|+-||..+++.+|+.+.+.+++.+|..+...|...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44577777777778899999999999999999999999999888776443
No 312
>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi
Probab=57.17 E-value=4.6 Score=42.19 Aligned_cols=26 Identities=27% Similarity=0.655 Sum_probs=24.3
Q ss_pred CCCCCCcchhhh-----HHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWS-----CDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 876 (902)
+|++.||.+|.+ .+++++||||.++.
T Consensus 229 ~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~ 259 (262)
T cd05572 229 QLLRRNPEERLGNLKGGIKDIKKHKWFNGFD 259 (262)
T ss_pred HHccCChhhCcCCcccCHHHHhcChhhhCCC
Confidence 899999999999 89999999999874
No 313
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=56.66 E-value=1.2e+02 Score=34.41 Aligned_cols=125 Identities=7% Similarity=-0.001 Sum_probs=70.6
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC-------------
Q psy767 88 ALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT------------- 154 (902)
Q Consensus 88 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~------------- 154 (902)
.+|.-..+..++..-.++-.+..+ +.||-.+.-.+ -+--.+..+.+|+++|++..+.|
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYIL-------LAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~ 243 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYIL-------LAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHH 243 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhh-------cccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence 455555667777777777777664 34554332222 12223445677777776653221
Q ss_pred -----------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHhcc
Q psy767 155 -----------FPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLE-PSAQTYTKLMCGYAKHGDMDSIKTKIPSLK 221 (902)
Q Consensus 155 -----------~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 221 (902)
..|-..+-..|-.++.+.|+.++|++.|++|.+..-. -+......|+.++...+.+.++..++.+..
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 1111122233445555678888888888887654211 123355667778888888887777777664
No 314
>PHA03212 serine/threonine kinase US3; Provisional
Probab=56.17 E-value=4.8 Score=45.32 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=27.0
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
++|+.||-+|.+++++++||||..+....+
T Consensus 358 ~mL~~dP~~Rpta~elL~hp~f~~~~~~~~ 387 (391)
T PHA03212 358 KMLAFDAHHRPSAEALLDFAAFQDIPDPYP 387 (391)
T ss_pred HHhcCChhhCCCHHHHhcChhhccCCCCCC
Confidence 899999999999999999999988766554
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=54.15 E-value=25 Score=24.26 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLES 111 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 111 (902)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46789999999999999999999998754
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=53.92 E-value=4.5 Score=37.98 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=59.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
|..+.+.+.+......++.+...+-..+....|.++..|++.++.++..++++. .+..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcchH
Confidence 677777788888888888888766556678888899999988877888877771 1223335567777788888
Q ss_pred hHHHHHHHhccc
Q psy767 211 DSIKTKIPSLKP 222 (902)
Q Consensus 211 ~~a~~l~~~~~~ 222 (902)
+++.-++..+..
T Consensus 87 ~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 87 EEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHccc
Confidence 777666665543
No 317
>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g
Probab=52.18 E-value=5.4 Score=42.35 Aligned_cols=26 Identities=42% Similarity=0.747 Sum_probs=23.6
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 876 (902)
+||+.||.+|. +++++++||||.++.
T Consensus 234 ~~l~~~P~~R~~~~~~~~~~~l~h~~~~~~~ 264 (280)
T cd05608 234 ALLAKDPEKRLGFRDGNCDGLRTHPLFRDLN 264 (280)
T ss_pred HHhcCCHHHhcCCCCCCHHHHhcChhhhcCC
Confidence 78999999999 999999999998754
No 318
>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also
Probab=52.13 E-value=5.8 Score=42.03 Aligned_cols=22 Identities=41% Similarity=0.801 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+||+.||.+|.+.+++++||||
T Consensus 263 ~~l~~~P~~R~t~~~il~h~~f 284 (284)
T cd07839 263 NLLVCNPVQRISAEEALQHPYF 284 (284)
T ss_pred HHhcCChhhcCCHHHHhcCCCC
Confidence 8999999999999999999998
No 319
>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla
Probab=51.96 E-value=6.1 Score=42.07 Aligned_cols=22 Identities=45% Similarity=0.911 Sum_probs=21.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+||+.||-+|.++.++++||||
T Consensus 269 ~~l~~~P~~R~s~~~~l~hp~f 290 (290)
T cd07862 269 KCLTFNPAKRISAYSALSHPYF 290 (290)
T ss_pred HHhccCchhcCCHHHHhcCCCC
Confidence 9999999999999999999998
No 320
>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex
Probab=51.86 E-value=6.8 Score=41.49 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||.+|.+.+++++||||
T Consensus 263 ~~l~~~P~~Rpt~~~~l~~~~f 284 (284)
T cd07860 263 QMLHYDPNKRISAKAALAHPFF 284 (284)
T ss_pred HhcCCCcccCCCHHHHhcCCCC
Confidence 8999999999999999999998
No 321
>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein. Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc
Probab=51.84 E-value=5.2 Score=43.19 Aligned_cols=28 Identities=39% Similarity=0.631 Sum_probs=25.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFE 878 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+||+.||.+|.+.+++++||||...++.
T Consensus 277 ~~l~~~P~~Rpt~~~ll~~p~~~~~~~~ 304 (314)
T cd08216 277 LCLQRDPESRPSASQLLNHSFFKQCKRR 304 (314)
T ss_pred HHhhcCCCcCcCHHHHhcCchHhhhccc
Confidence 6999999999999999999999988743
No 322
>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and
Probab=51.73 E-value=5.9 Score=43.17 Aligned_cols=29 Identities=31% Similarity=0.449 Sum_probs=27.0
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+|++.||.+|.+.+++++||||.+++.+.
T Consensus 271 ~~l~~~P~~Rpt~~~ll~~~~~~~~~~~~ 299 (330)
T cd07834 271 KMLVFDPKKRITADEALAHPYLAQLHDPE 299 (330)
T ss_pred HHccCChhhCCCHHHHHhCccHHhhcccc
Confidence 89999999999999999999999887764
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=51.43 E-value=83 Score=27.26 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q psy767 99 TFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIY 167 (902)
Q Consensus 99 ~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~ 167 (902)
.-++.+-++.+....+.|+..+..+. +.+|-|.+|+..|.++|+-.+.+. ..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aa------LrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAA------LRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 33566666667767789999999999 999999999999999999887543 224456776664
No 324
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=51.38 E-value=18 Score=24.48 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHH
Q psy767 156 PISEGVFNALIYGHSQANDMASAE 179 (902)
Q Consensus 156 ~p~~~~yn~Li~~~~~~g~~~~A~ 179 (902)
|-|..+|+.+-..|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345566666666666666666664
No 325
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=51.34 E-value=36 Score=22.46 Aligned_cols=29 Identities=14% Similarity=-0.032 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46777778888888888888888877664
No 326
>KOG2280|consensus
Probab=51.11 E-value=5.1e+02 Score=31.16 Aligned_cols=353 Identities=12% Similarity=0.136 Sum_probs=191.3
Q ss_pred HHHHHHhHHHHHHHHHcCCHHHHHHHHHHh--------hhCCCCCCHHHHH-----HHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 121 YQQLISNSKLISKYCQDGNIEGATKILEFM--------RDKTFPISEGVFN-----ALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 121 ~~~ll~~~~li~~~~~~g~~~~A~~l~~~m--------~~~~~~p~~~~yn-----~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
--+||++.++-.++.+.-+.++-..+-..+ ..-|++.+..-|. .+|+-+...+.+..|+++-..|..
T Consensus 386 QK~LL~AAsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~ 465 (829)
T KOG2280|consen 386 QKSLLRAASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNL 465 (829)
T ss_pred HHHHHHHHhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCC
Confidence 345555555566666666666655554443 3457777766664 467777888899999998877754
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---
Q psy767 188 AGLEPSAQTYTKLMCGYAKHGDM---DSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE--- 261 (902)
Q Consensus 188 ~g~~pd~~ty~~ll~a~~~~g~~---~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~--- 261 (902)
.-..- ...|.....-+.+..+. +.+..+-+++... .....+|..+......+|+.+.|..+++.=...+..
T Consensus 466 p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~--~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~l 542 (829)
T KOG2280|consen 466 PESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK--LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPL 542 (829)
T ss_pred ccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc--CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHH
Confidence 32221 45666666666666432 2233333333332 244456666666667789999998887643332211
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCC----------CCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhh-
Q psy767 262 -PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVN----------GDYLDIIHALAVSGHGEYIDEVSAIVCFVNICF- 329 (902)
Q Consensus 262 -pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~----------p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~- 329 (902)
.+..-+..-+.-....|+.+-...++-.|.++-.. |....+-.-+++..+.. .+++++++..
T Consensus 543 LL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~------~l~d~y~q~dn 616 (829)
T KOG2280|consen 543 LLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRA------TLYDFYNQDDN 616 (829)
T ss_pred HhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchh------hhhhhhhcccc
Confidence 12333455566666777777666666655443221 22122222222211111 0111111100
Q ss_pred -------cccccchHH-hcCCCCCHHHHHHHHHHHHHcCCHH-------HH---HHHHHHc----CCCCCcccHHHHHHH
Q psy767 330 -------HWLEGPMMS-QAGLEPSAQTYTKLMCGYAKHGDMD-------SI---RRLLAQN----GSSLVNGDYLDIIHA 387 (902)
Q Consensus 330 -------~~~~~~~m~-~~g~~p~~~t~~~Li~~y~~~g~~~-------~A---~~~~~~m----~~~~~~~~~~~li~~ 387 (902)
++....... ..|..|+.. ..-.+|++..... +- +++.+.+ ...-..-+.+.-+..
T Consensus 617 ~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~ 693 (829)
T KOG2280|consen 617 HQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTT 693 (829)
T ss_pred hhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHH
Confidence 000000000 123333332 2334444433311 11 1122222 222233446677788
Q ss_pred HHHcCChHHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCC
Q psy767 388 LAVSGHGEYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQP 464 (902)
Q Consensus 388 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~ 464 (902)
+..-|+..+|.++-.+.+- ||..- -+.+++..++|++-+++-++++.
T Consensus 694 li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskks------------------------- 743 (829)
T KOG2280|consen 694 LILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKKS------------------------- 743 (829)
T ss_pred HHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------------------------
Confidence 8888999999888887753 44432 26677888888887777665543
Q ss_pred CCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHH
Q psy767 465 GVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCH 531 (902)
Q Consensus 465 ~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~ 531 (902)
..||-| .+..|.+.|+.++|.+++...... .-...+|.+.|. +.+|.++--
T Consensus 744 PIGy~P----FVe~c~~~~n~~EA~KYiprv~~l-----------~ekv~ay~~~~~-~~eAad~A~ 794 (829)
T KOG2280|consen 744 PIGYLP----FVEACLKQGNKDEAKKYIPRVGGL-----------QEKVKAYLRVGD-VKEAADLAA 794 (829)
T ss_pred CCCchh----HHHHHHhcccHHHHhhhhhccCCh-----------HHHHHHHHHhcc-HHHHHHHHH
Confidence 234443 667788999999999888665422 146677788887 777766543
No 327
>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play
Probab=51.10 E-value=6.2 Score=42.55 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=24.9
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+||+.||-+|.+++++++||||.++..
T Consensus 268 ~~L~~dp~~R~t~~e~l~h~~~~~~~~ 294 (309)
T cd07872 268 KFLQYESKKRISAEEAMKHAYFRSLGT 294 (309)
T ss_pred HhccCChhhCCCHHHHhcChhhhhccc
Confidence 899999999999999999999987653
No 328
>KOG1585|consensus
Probab=51.01 E-value=3e+02 Score=28.42 Aligned_cols=87 Identities=8% Similarity=0.108 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCC-------CCCc-ccHHHHHHHHHHcCChHHHHHHHHHcccCCC-CCCCHHHH--
Q psy767 349 YTKLMCGYAKHGDMDSIRRLLAQNGS-------SLVN-GDYLDIIHALAVSGHGEYIDEIISKIQPGVG-YSADAANH-- 417 (902)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~~~~m~~-------~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~pd~~t~-- 417 (902)
|...-..+.+...+++|-..|.+-.. -+.. .-|...|-.+....++..|...++.--.-.+ ..|+....
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 44455666777777776666554211 1111 0155566667777788888888887433122 34444332
Q ss_pred -HHHHHHcCCHHHHHHHHH
Q psy767 418 -IYHLINKGQIDAAYRIVN 435 (902)
Q Consensus 418 -i~~l~~~g~~~~A~~~~~ 435 (902)
+......|+.+++..++.
T Consensus 233 nLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHhccCCHHHHHHHHc
Confidence 333357888888777654
No 329
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=51.00 E-value=6.7 Score=43.15 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=27.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+||+.||-+|.+++++++||||.+++...+
T Consensus 280 ~~l~~dP~~R~t~~~~l~~~~~~~~~~~~~ 309 (343)
T cd07880 280 KMLVLDAESRITAAEALAHPYFEEFHDPED 309 (343)
T ss_pred HHcCCChhhCCCHHHHhcCccHhhhcCccc
Confidence 799999999999999999999999877654
No 330
>KOG0661|consensus
Probab=50.18 E-value=24 Score=39.46 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=26.0
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+++.-||.+|-+.+|.++||||..-+....
T Consensus 273 ~ll~WDP~kRpTA~~al~~pffq~~~~~~~ 302 (538)
T KOG0661|consen 273 RLLAWDPDKRPTASQALQHPFFQVGRASGS 302 (538)
T ss_pred HHhcCCCccCccHHHHhcCccccccccccc
Confidence 889999999999999999999976655543
No 331
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=50.12 E-value=7.9 Score=45.87 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=25.0
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFE 878 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
++|+.||-+|.+++++++||||.+....
T Consensus 432 ~mL~~dP~kR~ta~e~L~Hpff~~~~~~ 459 (566)
T PLN03225 432 SMMRFKGRQRISAKAALAHPYFDREGLL 459 (566)
T ss_pred HHccCCcccCCCHHHHhCCcCcCCCCcc
Confidence 7899999999999999999999875543
No 332
>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase. Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1
Probab=49.92 E-value=6.8 Score=40.88 Aligned_cols=22 Identities=45% Similarity=0.978 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|+..||.+|.+++++++||||
T Consensus 246 ~~l~~~p~~Rp~~~~ll~~p~~ 267 (267)
T cd06610 246 LCLQKDPSKRPTAEELLKHKFF 267 (267)
T ss_pred HHcCCChhhCcCHHHHhhCCCC
Confidence 8999999999999999999998
No 333
>KOG0543|consensus
Probab=49.86 E-value=1.5e+02 Score=32.83 Aligned_cols=56 Identities=7% Similarity=-0.078 Sum_probs=25.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
.-+|.+.+++..|++.-+.....+ ++|+-..--=-.+|...|+++.|...|+.+++
T Consensus 264 A~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 264 AACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 334444444444444444444433 33333333333444444555555555555544
No 334
>KOG4648|consensus
Probab=49.74 E-value=35 Score=36.33 Aligned_cols=77 Identities=13% Similarity=0.037 Sum_probs=42.7
Q ss_pred HHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q psy767 93 YLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ 171 (902)
Q Consensus 93 ~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~ 171 (902)
|.+.|.+++|+..|..-. .+.| |.++|..- ..+|.+..++..|+.=.+.....+ ...+.+|.|
T Consensus 107 yFKQgKy~EAIDCYs~~i--a~~P~NpV~~~NR------A~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSR 170 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAI--AVYPHNPVYHINR------ALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSR 170 (536)
T ss_pred hhhccchhHHHHHhhhhh--ccCCCCccchhhH------HHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHH
Confidence 555677777777776544 3345 66666666 667777666665555444443322 123455655
Q ss_pred CCCHHHHHHHHHHH
Q psy767 172 ANDMASAEGILTMM 185 (902)
Q Consensus 172 ~g~~~~A~~l~~~M 185 (902)
.+....++....+.
T Consensus 171 R~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 171 RMQARESLGNNMEA 184 (536)
T ss_pred HHHHHHHHhhHHHH
Confidence 55444444444444
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.60 E-value=1e+02 Score=31.13 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=53.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG--LEPSAQTYTKLMCG 203 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g--~~pd~~ty~~ll~a 203 (902)
++.+.+.+++.+|+...+.-.+.. |-|.-.-..+++.+|-.|++++|..-++-.-... ..+-..+|..+|.+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 777888899999998887766654 5567778889999999999999988777665431 23445677777765
No 336
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=49.58 E-value=8.7 Score=42.03 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=26.9
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+||+.||-+|.+++++++||||..+....+
T Consensus 274 ~~l~~dP~~Rpt~~e~l~hp~~~~~~~~~~ 303 (336)
T cd07849 274 KMLTFNPHKRITVEEALAHPYLEQYHDPSD 303 (336)
T ss_pred HHcCCChhhCcCHHHHhcCccccccCCCCC
Confidence 899999999999999999999988876543
No 337
>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos
Probab=49.50 E-value=6.8 Score=42.80 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=26.2
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+||+.||.+|.+.+++++||||.++....
T Consensus 272 ~~l~~~P~~Rpt~~e~l~hp~f~~~~~~~ 300 (338)
T cd07859 272 RLLAFDPKDRPTAEEALADPYFKGLAKVE 300 (338)
T ss_pred HHcCcCcccCCCHHHHhcCchhhhcCccc
Confidence 99999999999999999999998876643
No 338
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=48.90 E-value=21 Score=23.63 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=11.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHccc
Q psy767 382 LDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 382 ~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
..+...|...|++++|++.|++..+
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3344444444444444444444443
No 339
>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati
Probab=48.65 E-value=6.8 Score=42.97 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=27.1
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+||+.||.+|.+++++++||||..++....
T Consensus 273 ~~l~~~P~~Rps~~ell~h~~~~~~~~~~~ 302 (337)
T cd07858 273 KMLVFDPSKRITVEEALAHPYLASLHDPSD 302 (337)
T ss_pred HHhcCChhhccCHHHHHcCcchhhhcCccc
Confidence 899999999999999999999988766553
No 340
>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou
Probab=48.60 E-value=7.2 Score=41.42 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=21.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+||+.||-+|.+.+++++||||
T Consensus 267 ~~L~~dP~~R~t~~~~l~hp~f 288 (288)
T cd07863 267 EMLTFNPHKRISAFRALQHPFF 288 (288)
T ss_pred HHhccCcccCCCHHHHhcCCCC
Confidence 7999999999999999999998
No 341
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=48.55 E-value=1.3e+02 Score=31.58 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=47.5
Q ss_pred HHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q psy767 201 MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK---- 276 (902)
Q Consensus 201 l~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~---- 276 (902)
|.+++..++|.++....-..-+............-+.+|.+.++...+.++-......--.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4555555555555544433333333334444444555555666666666665555543333444456666655554
Q ss_pred -cCCHHHHHHHH
Q psy767 277 -HGDMDSVRRLL 287 (902)
Q Consensus 277 -~g~~~~A~~lf 287 (902)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 57888888776
No 342
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=48.49 E-value=1.8e+02 Score=25.50 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=60.3
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHH
Q psy767 98 HTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMAS 177 (902)
Q Consensus 98 ~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~ 177 (902)
..++|..+-+.+...+-. .. ...+++ +..+.+.|++++|..+.+.+ ..||...|-+|-. .+.|..+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E--~v~lIR----lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~ 86 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EE--AVQLIR----LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSA 86 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HH--HHHHHH----HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHH
Confidence 457788888877655422 11 222322 45567789999999988776 3788888887644 56788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH
Q psy767 178 AEGILTMMSQAGLEPSAQTYTK 199 (902)
Q Consensus 178 A~~l~~~M~~~g~~pd~~ty~~ 199 (902)
+..-+..|...| .|...+|..
T Consensus 87 l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 87 LESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHHHHHhCC-CHHHHHHHH
Confidence 888888888877 566666654
No 343
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.48 E-value=2.4e+02 Score=29.62 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q psy767 268 TKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 268 ~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
.-+|..+.+.|.+.+|+.+...
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHH
Confidence 4578888999999998887764
No 344
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=47.98 E-value=7.6 Score=42.92 Aligned_cols=28 Identities=43% Similarity=0.717 Sum_probs=25.0
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFE 878 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+||+.||.+|.+++++++||||+...+.
T Consensus 293 ~mL~~dP~~Rps~~ell~hp~~~~~~~~ 320 (355)
T cd07874 293 KMLVIDPAKRISVDEALQHPYINVWYDP 320 (355)
T ss_pred HHhcCCchhcCCHHHHhcCcchhcccCh
Confidence 8999999999999999999999866543
No 345
>KOG2063|consensus
Probab=47.87 E-value=6.5e+02 Score=31.37 Aligned_cols=118 Identities=12% Similarity=0.098 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHhHHHHHHHHHcCCH--HHHHHHHHHhhhCCCCCCH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN---RVTYQQLISNSKLISKYCQDGNI--EGATKILEFMRDKTFPISE 159 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd---~~t~~~ll~~~~li~~~~~~g~~--~~A~~l~~~m~~~~~~p~~ 159 (902)
.|..|+--|...|..++|+++|.+....--.-| ...+-.+ +.-+.+.+.. +.+++.-+...+.+-.-..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~i------i~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi 579 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKI------IEYLKKLGAENLDLILEYADWVLNKNPEAGI 579 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHH------HHHHHHhcccchhHHHHHhhhhhccCchhhe
Confidence 378899999999999999999999876210001 1112223 5544554443 4444433333222100000
Q ss_pred HHHH------------HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q psy767 160 GVFN------------ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG 208 (902)
Q Consensus 160 ~~yn------------~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g 208 (902)
..++ ..+-.|......+-+..+++.+....-.++..-++.++.-|+..-
T Consensus 580 ~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v 640 (877)
T KOG2063|consen 580 QIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKV 640 (877)
T ss_pred eeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHH
Confidence 1111 123345666777888888888877766667777788887777643
No 346
>KOG0578|consensus
Probab=47.64 E-value=7 Score=44.39 Aligned_cols=23 Identities=43% Similarity=0.769 Sum_probs=22.2
Q ss_pred CCCCCCcchhhhHHHhhcCCCcc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFN 873 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~ 873 (902)
+||.+|+..|.+...||+||||.
T Consensus 505 ~cL~~dv~~RasA~eLL~HpFl~ 527 (550)
T KOG0578|consen 505 RCLVVDVEQRASAKELLEHPFLK 527 (550)
T ss_pred HHhhcchhcCCCHHHHhcChhhh
Confidence 99999999999999999999993
No 347
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=47.54 E-value=25 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 261 EPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 261 ~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
+-|..+|+.+-..|...|++++|.
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 567889999999999999999986
No 348
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.43 E-value=88 Score=32.04 Aligned_cols=94 Identities=20% Similarity=0.358 Sum_probs=66.6
Q ss_pred hcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHcCCCCCcccH-HHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH
Q psy767 339 QAGLEPSAQTYTKLMCGYA--KHGDMDSIRRLLAQNGSSLVNGDY-LDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA 415 (902)
Q Consensus 339 ~~g~~p~~~t~~~Li~~y~--~~g~~~~A~~~~~~m~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 415 (902)
..+++++ |..++++|. ..++++.|.+.+-.-. ..+++ ..++.++...|+...|+.+++.+.. ....++..
T Consensus 72 ~f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~ps---~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p-~l~s~~~~ 144 (226)
T PF13934_consen 72 AFGIPPK---YIKFIQGFWLLDHGDFEEALELLSHPS---LIPWFPDKILQALLRRGDPKLALRYLRAVGP-PLSSPEAL 144 (226)
T ss_pred HhCCCHH---HHHHHHHHHHhChHhHHHHHHHhCCCC---CCcccHHHHHHHHHHCCChhHHHHHHHhcCC-CCCCHHHH
Confidence 3444443 445566654 4577888988874432 22443 3688999999999999999999987 55666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q psy767 416 NHIYHLINKGQIDAAYRIVNTLAR 439 (902)
Q Consensus 416 t~i~~l~~~g~~~~A~~~~~~m~~ 439 (902)
+.......++.+.+|..+-.....
T Consensus 145 ~~~~~~La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 145 TLYFVALANGLVTEAFSFQRSYPD 168 (226)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCch
Confidence 665555788999999988776654
No 349
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=47.22 E-value=3.8e+02 Score=28.47 Aligned_cols=109 Identities=12% Similarity=0.051 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHh-CC-CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q psy767 140 IEGATKILEFMRD-KTFPISEGVFNALIYGHSQ-AN-DMASAEGILTMMS-QAGLEPSAQTYTKLMCGYAKHGDMDSIKT 215 (902)
Q Consensus 140 ~~~A~~l~~~m~~-~~~~p~~~~yn~Li~~~~~-~g-~~~~A~~l~~~M~-~~g~~pd~~ty~~ll~a~~~~g~~~~a~~ 215 (902)
+.+|+++|+.... ..+--|..+-..|++.... .+ ....-.++.+-+. ..|-.++..+...+|..+++.++|....+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4456666653322 2244455666666666655 22 1222222222222 22446677777788888888888887777
Q ss_pred HHHhcccC-CCccchhhHHHHHHHHHhcCCHHHH
Q psy767 216 KIPSLKPQ-SELFLCFSFQLTNLLILVSSDMASA 248 (902)
Q Consensus 216 l~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A 248 (902)
+++..... +...+...+..++.+....|+..-.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 77666554 3333344444444444444444333
No 350
>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase. Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea
Probab=46.99 E-value=7.9 Score=40.98 Aligned_cols=23 Identities=48% Similarity=0.781 Sum_probs=22.0
Q ss_pred CCCCCCcchhhhHHHhhcCCCcc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFN 873 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~ 873 (902)
+|++.||.+|.+.+++++||||.
T Consensus 264 ~~l~~~p~~R~~~~~~l~h~~~~ 286 (286)
T cd07832 264 GLLVYDPSKRLSAAEALRHPYFT 286 (286)
T ss_pred HHhccChhhCCCHHHHhhCcCcC
Confidence 89999999999999999999995
No 351
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=46.90 E-value=11 Score=41.54 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=27.0
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+|++.||-+|.+++++++||||..+....+
T Consensus 280 ~~l~~~P~~Rpt~~ell~h~~~~~~~~~~~ 309 (343)
T cd07851 280 KMLVLDPDKRITAAEALAHPYLAEYHDPED 309 (343)
T ss_pred HhCCCChhhCCCHHHHhcCCCccccCCCcc
Confidence 899999999999999999999988766654
No 352
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=46.89 E-value=7.2 Score=42.42 Aligned_cols=27 Identities=30% Similarity=0.696 Sum_probs=24.1
Q ss_pred CCCCCCcchhhhH------HHhhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSC------DQLLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 877 (902)
+||+.||.+|.++ ++.++||||.++..
T Consensus 229 ~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~~~ 261 (320)
T cd05590 229 AFMTKNPTMRLGSLTLGGEEAILRHPFFKELDW 261 (320)
T ss_pred HHcccCHHHCCCCCCCCCHHHHHcCCCcCCCCH
Confidence 7899999999999 99999999988653
No 353
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=46.64 E-value=10 Score=41.45 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.9
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+|++.||.+|.+.+++++||||..+....+
T Consensus 277 ~~l~~~P~~Rps~~~il~~~~~~~~~~~~~ 306 (337)
T cd07852 277 KLLVFNPNKRLTAEEALEHPYVAQFHNPSD 306 (337)
T ss_pred HhccCCcccccCHHHHhhChhhhhhccCCC
Confidence 899999999999999999999999865544
No 354
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.53 E-value=1.4e+02 Score=29.19 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=37.1
Q ss_pred HHHHHHhcCHHHHHHHHHHhhhhhchhhccchhhhhhhccCCchhHHH
Q psy767 680 VVHMLRQHNLKEAALLAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLVT 727 (902)
Q Consensus 680 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 727 (902)
+.-+.+.|.+++|.++++++-...+....|.-|+...++.+.+..+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHccccccHHHH
Confidence 334469999999999999998766655567778888888888776654
No 355
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=46.08 E-value=1.4e+02 Score=29.73 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=20.7
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 338 SQAGLEPSAQTYTKLMCGYAKHGDMDSIR 366 (902)
Q Consensus 338 ~~~g~~p~~~t~~~Li~~y~~~g~~~~A~ 366 (902)
...+-.+|+..+.+|.+.|.+.|+++.|.
T Consensus 170 ~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 170 SNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34444677777888888888888777764
No 356
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=45.98 E-value=8.5 Score=39.97 Aligned_cols=22 Identities=50% Similarity=0.949 Sum_probs=20.2
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+||+.||-+|.+.+++++||||
T Consensus 239 ~~l~~~p~~R~~~~~l~~~~~~ 260 (260)
T PF00069_consen 239 KMLSKDPEQRPSAEELLKHPWF 260 (260)
T ss_dssp HHSSSSGGGSTTHHHHHTSGGG
T ss_pred HHccCChhHCcCHHHHhcCCCC
Confidence 5678899999999999999998
No 357
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=45.92 E-value=78 Score=27.69 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q psy767 101 SPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYG 168 (902)
Q Consensus 101 ~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~ 168 (902)
+..+-++.+....+.|+..+..+. +.+|-|.+++..|.++|+-.+.+. .+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aA------LrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAA------LRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHH------HHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 455666666666789999999999 999999999999999999987653 2333377777653
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.91 E-value=1e+02 Score=32.36 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=71.6
Q ss_pred CCCCCHHHHHHHHHHHHHC-CCchHHHHHHHHHHHCCCCCC-------------HHHHHHHHHhHHHHHHHHHcCCHHHH
Q psy767 78 DVPLDISHYNALLRVYLDN-EHTFSPTDFLAKLESQGIEPN-------------RVTYQQLISNSKLISKYCQDGNIEGA 143 (902)
Q Consensus 78 g~~pd~~~yn~li~~~~~~-g~~~~A~~l~~~M~~~g~~pd-------------~~t~~~ll~~~~li~~~~~~g~~~~A 143 (902)
+..-|+.-|.+.+...-+- -.++++.++....+. ++-|+ ..+|..+ .+-....|..+|.+.+|
T Consensus 222 ~~k~Dv~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kl--lgkva~~yle~g~~neA 298 (361)
T COG3947 222 LPKYDVQEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKL--LGKVARAYLEAGKPNEA 298 (361)
T ss_pred CccccHHHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHH--HHHHHHHHHHcCChHHH
Confidence 3566888888777765443 234556665555431 12111 1122222 12226677788888888
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHH
Q psy767 144 TKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ-----AGLEPSAQT 196 (902)
Q Consensus 144 ~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t 196 (902)
.++.+.....+ +.+...|-.|+..++..|+--.|.+-|+.|.+ .|+..|...
T Consensus 299 i~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 299 IQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 88888777766 66778888888888888888788877777743 355554443
No 359
>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i
Probab=45.49 E-value=5.6 Score=42.37 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=24.9
Q ss_pred CCCCCCcchhhh-----HHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWS-----CDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 879 (902)
+||+.||-+|.+ .+++++||||+++....
T Consensus 238 ~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~~~~ 271 (285)
T cd05631 238 MLLTKNPKERLGCRGNGAAGVKQHPIFKNINFKR 271 (285)
T ss_pred HHhhcCHHHhcCCCCCCHHHHhcCHhhcCCCHHH
Confidence 789999999997 69999999998876443
No 360
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=45.43 E-value=8.3 Score=40.57 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.9
Q ss_pred CCCCCCcchhhh-HHHhhcCCCccC
Q psy767 851 RCLDKDPLRRWS-CDQLLRHPYFNG 874 (902)
Q Consensus 851 ~~~~~~~~~~~~-~~~~~~~~~~~~ 874 (902)
++|+.||-.|.+ ++++++||||.|
T Consensus 243 ~~l~~~p~~R~~~~~~~l~h~~~~~ 267 (267)
T PHA03390 243 SMLKYNINYRLTNYNEIIKHPFLKI 267 (267)
T ss_pred HHhccChhhCCchHHHHhcCCcccC
Confidence 899999999996 599999999975
No 361
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=44.72 E-value=8.6 Score=41.85 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=23.0
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~ 875 (902)
+||+.||.+|. +++++++||||.+.
T Consensus 228 ~~L~~dP~~R~~~~~~~~~~ll~h~~f~~~ 257 (323)
T cd05571 228 GLLKKDPKQRLGGGPEDAKEIMEHRFFASI 257 (323)
T ss_pred HHccCCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence 78999999999 89999999999875
No 362
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=44.41 E-value=4.5e+02 Score=28.51 Aligned_cols=191 Identities=13% Similarity=0.069 Sum_probs=105.6
Q ss_pred HHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHH
Q psy767 200 LMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGL----EPSAQTYTKLMCGYA 275 (902)
Q Consensus 200 ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~----~pd~~ty~~LI~a~~ 275 (902)
...+.-+.|+|+...+.......... ....+..+..+ ..++.+++...++.....-. ......|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~--~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSP--EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCCh--hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 35677788999986666666554322 23333333333 67888888888776654211 112233444444444
Q ss_pred HcCCHHHHHHHHHHhccCC-CCCCHHHHHHHHHH-----cCCcccHHHHHHHHHHhhhhhcccccchHHh--cCCCCCHH
Q psy767 276 KHGDMDSVRRLLAQSGSSL-VNGDYLDIIHALAV-----SGHGEYIDEVSAIVCFVNICFHWLEGPMMSQ--AGLEPSAQ 347 (902)
Q Consensus 276 ~~g~~~~A~~lf~~m~~~~-~~p~~~tl~~~l~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~--~g~~p~~~ 347 (902)
+...+.|..++..-..... .......+...+.. .......+.+..+..++ .. ........
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~------------l~~~~~~~~~~~ 147 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLV------------LSLILLPEELAE 147 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH------------HhcccchhHHHH
Confidence 4444444444333321111 12223333333322 22223333333333221 11 12334567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCCC------CcccHHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 348 TYTKLMCGYAKHGDMDSIRRLLAQNGSSL------VNGDYLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 348 t~~~Li~~y~~~g~~~~A~~~~~~m~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
+|..+...+.+.|+++.|...+..+.... ...........+...|+..+|+..++....
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999999999998865432 122244567778888999999999988876
No 363
>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2
Probab=43.89 E-value=9.4 Score=40.38 Aligned_cols=22 Identities=45% Similarity=0.800 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+||+.||.+|.+.+++++||||
T Consensus 264 ~~l~~dP~~Rpt~~~ll~~~~~ 285 (285)
T cd07861 264 KMLIYDPAKRISAKKALNHPYF 285 (285)
T ss_pred HHhcCChhhCCCHHHHhcCCCC
Confidence 8999999999999999999998
No 364
>PHA03207 serine/threonine kinase US3; Provisional
Probab=43.74 E-value=38 Score=37.98 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=23.2
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (902)
+||..||.+|.+.++++.||||...
T Consensus 357 ~ml~~dp~~Rpsa~e~l~~p~f~~~ 381 (392)
T PHA03207 357 KMLTFDQEFRPSAQDILSLPLFTKE 381 (392)
T ss_pred HHhccChhhCCCHHHHhhCchhhcc
Confidence 8999999999999999999999653
No 365
>PTZ00024 cyclin-dependent protein kinase; Provisional
Probab=43.61 E-value=12 Score=40.76 Aligned_cols=29 Identities=31% Similarity=0.521 Sum_probs=25.9
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+|++.||.+|.++++++.||||.+.....
T Consensus 295 ~~l~~~P~~R~s~~~~l~~~~~~~~~~~~ 323 (335)
T PTZ00024 295 SLLKLNPLERISAKEALKHEYFKSDPLPC 323 (335)
T ss_pred HHcCCCchhccCHHHHhcCcccCCCCCCC
Confidence 89999999999999999999998775544
No 366
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=43.32 E-value=1.8e+02 Score=29.00 Aligned_cols=72 Identities=11% Similarity=-0.011 Sum_probs=45.2
Q ss_pred HHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 212 SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQ---AGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
.|.+.|-.+...+..-++.....+...|. ..+.+.+..++....+ .+-.+|...+.+|.+.|.+.|+++.|.
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 35555555555555444433333333333 4555666666665554 233788999999999999999998875
No 367
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=43.10 E-value=8.4 Score=41.95 Aligned_cols=27 Identities=26% Similarity=0.612 Sum_probs=23.2
Q ss_pred CCCCCCcchhhhH-----HHhhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSC-----DQLLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 877 (902)
+||+.||.+|+++ +++++||||.+...
T Consensus 234 ~~l~~~P~~R~~~~~~~~~~~~~hp~~~~~~~ 265 (324)
T cd05587 234 GLLTKHPAKRLGCGPTGERDIREHAFFRRIDW 265 (324)
T ss_pred HHhhcCHHHcCCCCCCCHHHHhcCCCcCCCCH
Confidence 6889999999987 89999999987643
No 368
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=43.00 E-value=57 Score=21.24 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
.|..+-..|.+.|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777776653
No 369
>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the
Probab=42.98 E-value=9.4 Score=41.73 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=27.8
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+||+.||-+|.+.++++.||||...+....
T Consensus 276 ~~l~~~P~~Rpt~~~~l~~~~~~~~~~~~~ 305 (334)
T cd07855 276 QMLQFDPEERITVEQALQHPFLAQYHDPDD 305 (334)
T ss_pred HHccCChhhCcCHHHHHhChhhhhccCCcc
Confidence 899999999999999999999998887765
No 370
>KOG1464|consensus
Probab=42.83 E-value=4.1e+02 Score=27.68 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=101.2
Q ss_pred CCCCCCCHHHHHHHHHHH-HHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh--
Q psy767 76 ELDVPLDISHYNALLRVY-LDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD-- 152 (902)
Q Consensus 76 ~~g~~pd~~~yn~li~~~-~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~-- 152 (902)
..+-.||+..=|..-.+- .+...+++|+.-|.+..+..-.--..-|-+| ..+|..+.+.|++++...-+.+|..
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKAL---KQmiKI~f~l~~~~eMm~~Y~qlLTYI 95 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKAL---KQMIKINFRLGNYKEMMERYKQLLTYI 95 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHH---HHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 445667776655443331 2345789999999998865333344444444 4458899999999999888888742
Q ss_pred -CCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHHcCChhHHHHHHHhcccCC
Q psy767 153 -KTFP--ISEGVFNALIYGHSQANDMASAEGILTMMSQAG-LEPSA----QTYTKLMCGYAKHGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 153 -~~~~--p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~----~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~ 224 (902)
..+. -+..+.|+++.--+.+.+.+.-..+|+.-...= -.-|. .|-+-|-+.|...+.+....++++++....
T Consensus 96 kSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 96 KSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred HHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 1111 134567777776666666555555544322110 00011 122334445555555555555554443211
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 225 ELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
...+. .-+ .+.| ..=..+|..=|..|....+-.+...+|++.
T Consensus 176 q~edG--------------edD---------~kKG-tQLLEiYAlEIQmYT~qKnNKkLK~lYeqa 217 (440)
T KOG1464|consen 176 QTEDG--------------EDD---------QKKG-TQLLEIYALEIQMYTEQKNNKKLKALYEQA 217 (440)
T ss_pred ccccC--------------chh---------hhcc-chhhhhHhhHhhhhhhhcccHHHHHHHHHH
Confidence 00000 000 0011 112345666777777777777777777764
No 371
>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription
Probab=42.74 E-value=11 Score=42.03 Aligned_cols=26 Identities=38% Similarity=0.513 Sum_probs=24.3
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
+||+.||.+|.+++++++||||.+.+
T Consensus 270 ~mL~~dP~~R~t~~e~l~hp~~~~~~ 295 (372)
T cd07853 270 RMLVFDPDKRISAADALAHPYLDEGR 295 (372)
T ss_pred HhCCCChhhCcCHHHHhcCHhhCCCc
Confidence 89999999999999999999998754
No 372
>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl
Probab=42.68 E-value=10 Score=40.66 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||.+|.+.+++++||||
T Consensus 289 ~~l~~~P~~R~t~~e~l~h~~f 310 (310)
T cd07865 289 KLLVLDPAKRIDADTALNHDFF 310 (310)
T ss_pred HHhcCChhhccCHHHHhcCCCC
Confidence 8999999999999999999998
No 373
>PLN00009 cyclin-dependent kinase A; Provisional
Probab=42.18 E-value=8.1 Score=41.20 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=25.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+||+.||-+|.+.+++++||||.++++
T Consensus 266 ~~l~~~P~~Rps~~~~l~~~~~~~~~~ 292 (294)
T PLN00009 266 KMLRLDPSKRITARAALEHEYFKDLGD 292 (294)
T ss_pred HHccCChhhCcCHHHHhcCchHhHHhc
Confidence 899999999999999999999998765
No 374
>KOG0592|consensus
Probab=42.08 E-value=12 Score=42.39 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHH-H--hhcCcchhhHHHHHHHHHHhccccccccchHHHHhhhhhhhhHHHHHHHhhhhcCCCcccccCC
Q psy767 762 IFAGNVLLDIYK-A--TRQDPNVVSHLEQLLNAFVEHAIPISAFSSDYIQNGLGSALTSDISKALGALTSDDLMPQPLQY 838 (902)
Q Consensus 762 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 838 (902)
=+.|++|++++. + ++. .|.- -++++..+..+.+++...+-+ .++..||
T Consensus 271 WAlGCilyQmlaG~PPFra-~Ney----liFqkI~~l~y~fp~~fp~~a------------~dLv~KL------------ 321 (604)
T KOG0592|consen 271 WALGCILYQMLAGQPPFRA-ANEY----LIFQKIQALDYEFPEGFPEDA------------RDLIKKL------------ 321 (604)
T ss_pred HHHHHHHHHHhcCCCCCcc-ccHH----HHHHHHHHhcccCCCCCCHHH------------HHHHHHH------------
Confidence 478999999986 1 111 2222 245566666666666554322 2222222
Q ss_pred CCCCCCCCCCCCCCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 839 VPSMFIPRGQPLRCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
|..||.+|++++|+-+||||+++-.+.
T Consensus 322 --------------Lv~dp~~Rlt~~qIk~HpFF~~Vdw~n 348 (604)
T KOG0592|consen 322 --------------LVRDPSDRLTSQQIKAHPFFEGVDWEN 348 (604)
T ss_pred --------------HccCccccccHHHHhhCcccccCChhh
Confidence 346889999999999999998876554
No 375
>KOG1464|consensus
Probab=42.04 E-value=4.2e+02 Score=27.59 Aligned_cols=318 Identities=11% Similarity=0.086 Sum_probs=168.0
Q ss_pred hcCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHH-cCCCCCcccHH-----HHHHHHHHcCChHHHHHHHHHcccC--CC
Q psy767 339 QAGLEPSAQTYTKLMCGY-AKHGDMDSIRRLLAQ-NGSSLVNGDYL-----DIIHALAVSGHGEYIDEIISKIQPG--VG 409 (902)
Q Consensus 339 ~~g~~p~~~t~~~Li~~y-~~~g~~~~A~~~~~~-m~~~~~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~--~g 409 (902)
..+-.||+..=|-.-.+- .+..+.++|+.-|.+ ....|....|. .+|....+.|++++.++.|.+|..- ..
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 455566665544332221 234578899999987 44555666654 6899999999999999999988641 11
Q ss_pred CCC----CHHHHHHHH-HHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCC
Q psy767 410 YSA----DAANHIYHL-INKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQ 484 (902)
Q Consensus 410 ~~p----d~~t~i~~l-~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~ 484 (902)
++- -..+-+.-| +.+.+.+.-..+++.-.....-..+. ...+. ....+...|...|.
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNe-----------------RLWFK-TNtKLgkl~fd~~e 160 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNE-----------------RLWFK-TNTKLGKLYFDRGE 160 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcc-----------------eeeee-ccchHhhhheeHHH
Confidence 111 112222222 34444444444444332211000000 00000 01113344666677
Q ss_pred hHHHHHHHHHHHHccCCC-C--------CccchHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHHhcc
Q psy767 485 IDAAYRIVNTLARSANIN-G--------EQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD-ENLHPRAFNLAVLIKAHVL 554 (902)
Q Consensus 485 ~~~A~~l~~~m~~~~~~~-~--------~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~-~g~~Pd~~t~~~ll~a~~~ 554 (902)
+..-.++++++....... + ..+..|..=|+.|...+. -.+...++++... ..--|-+.....+-.+- -
T Consensus 161 ~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKn-NKkLK~lYeqalhiKSAIPHPlImGvIRECG-G 238 (440)
T KOG1464|consen 161 YTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKN-NKKLKALYEQALHIKSAIPHPLIMGVIRECG-G 238 (440)
T ss_pred HHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcc-cHHHHHHHHHHHHhhccCCchHHHhHHHHcC-C
Confidence 777778888776653111 1 123567777888888777 4666667776433 22345554444333221 1
Q ss_pred cc-cccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhhh-HHHHHHHHHHHHH
Q psy767 555 KE-DYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFL-DAEVLRILQVAEA 632 (902)
Q Consensus 555 ~~-~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~~-~~~al~ll~~m~~ 632 (902)
+. .+.|..++ |..-+.+.|+-..+.| -|-+ ..++-+++.+.. .+..+.=|+.- .
T Consensus 239 KMHlreg~fe~---------AhTDFFEAFKNYDEsG------------spRR--ttCLKYLVLANMLmkS~iNPFDsQ-E 294 (440)
T KOG1464|consen 239 KMHLREGEFEK---------AHTDFFEAFKNYDESG------------SPRR--TTCLKYLVLANMLMKSGINPFDSQ-E 294 (440)
T ss_pred ccccccchHHH---------HHhHHHHHHhcccccC------------Ccch--hHHHHHHHHHHHHHHcCCCCCccc-c
Confidence 11 15667777 6665555666666777 4444 334444443332 22222222221 1
Q ss_pred HhCC--CCChHHHHHhhhccCCCCCCChHHHHHHHHhcCCCCccchHHHHHHHHHhcCHHHHHHHHHHhhh
Q psy767 633 EFGV--GSNTETLRDYVLPVLSPPNQVSGEVFSQLRSVGVTIGSITSAYVVHMLRQHNLKEAALLAKSFRA 701 (902)
Q Consensus 633 ~~g~--~P~~~t~~~lv~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 701 (902)
..+. +|......+++.++-+......+.+++. ....+..++++...+-.+++.=+-+-.+++++.|..
T Consensus 295 AKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~-~~~~IM~DpFIReh~EdLl~niRTQVLlkLIkPYt~ 364 (440)
T KOG1464|consen 295 AKPYKNDPEILAMTNLVAAYQNNDIIEFERILKS-NRSNIMDDPFIREHIEDLLRNIRTQVLLKLIKPYTN 364 (440)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1222 2335566777777766444222322222 134566677888888888887777888888877754
No 376
>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins. Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha
Probab=41.60 E-value=10 Score=38.99 Aligned_cols=22 Identities=27% Similarity=0.685 Sum_probs=20.4
Q ss_pred CCCCCCcchhhhH-----HHhhcCCCc
Q psy767 851 RCLDKDPLRRWSC-----DQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~-----~~~~~~~~~ 872 (902)
+||+.||.+|++. +++++||||
T Consensus 211 ~~l~~dp~~R~~~~~~~~~~~~~h~~~ 237 (237)
T cd05576 211 QLLQFNPTERLGAGVAGVEDIKSHPFF 237 (237)
T ss_pred HHccCCHHHhcCCCccchHHHHcCCCC
Confidence 7899999999985 999999998
No 377
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=41.60 E-value=11 Score=39.91 Aligned_cols=22 Identities=50% Similarity=0.831 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||.+|-+++++++||||
T Consensus 261 ~cl~~~p~~Rp~~~ell~~~~~ 282 (282)
T cd06636 261 GCLVKNYLSRPSTEQLLKHPFI 282 (282)
T ss_pred HHhCCChhhCcCHHHHhcCCCC
Confidence 8999999999999999999998
No 378
>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi
Probab=41.56 E-value=14 Score=40.66 Aligned_cols=27 Identities=30% Similarity=0.641 Sum_probs=24.7
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+||+.||-+|.+.+++++||||..+..
T Consensus 282 ~~L~~dP~~R~t~~ell~h~~~~~~~~ 308 (342)
T cd07854 282 QILTFNPMDRLTAEEALMHPYMSCYSC 308 (342)
T ss_pred HHhCCCchhccCHHHHhCCCccccccC
Confidence 899999999999999999999987643
No 379
>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess
Probab=41.10 E-value=11 Score=40.06 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=21.2
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|+..||.+|.+++++++||||
T Consensus 270 ~~l~~dp~~R~t~~~~l~h~~~ 291 (291)
T cd07870 270 QMLMMFPKDRISAQDALLHPYF 291 (291)
T ss_pred HHhCcCcccCcCHHHHhcCCCC
Confidence 7899999999999999999998
No 380
>KOG4521|consensus
Probab=41.02 E-value=8.8e+02 Score=30.97 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=85.6
Q ss_pred cchhhhhhhccCCchhHHHHHHHHHhhhhcCCCcchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhhcCcchhhHHHHH
Q psy767 709 RPVLAVSYLRTQDLPSLVTVVRAVCENWEKGEEGEKEEEGEEKTAGQLIDMDRIFAGNVLLDIYKATRQDPNVVSHLEQL 788 (902)
Q Consensus 709 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (902)
+.+...+.+..++|..+..+++.+..+|.. .-+.-+|+-|+++= .+ + .||+|
T Consensus 1312 r~~~~~ssaadeaW~lL~~lv~ry~a~~~~--------------------l~r~sv~stll~l~--~~-----~-~LP~W 1363 (1480)
T KOG4521|consen 1312 RGWVAASSAADEAWSLLRGLVDRYQAEWPG--------------------LSRPSVGSTLLFLS--FK-----L-NLPVW 1363 (1480)
T ss_pred ccchhhccchhhHHHHHHHHHHHHHhhccc--------------------ccchHHHHHHHhcc--cC-----c-cchHH
Confidence 334566778888999999999999877751 12223444443321 11 2 38999
Q ss_pred HHHHHhccccccccchHHHHhhhhhhhhHHHHHHHhhhhcCCCcccccCCCCCCCCCCCCCC-CCCCCCcchhhhHHHhh
Q psy767 789 LNAFVEHAIPISAFSSDYIQNGLGSALTSDISKALGALTSDDLMPQPLQYVPSMFIPRGQPL-RCLDKDPLRRWSCDQLL 867 (902)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 867 (902)
|...-+ -+.+++.+|=.++-...++..++|.+.-.+.|---|+.+ . .-.|... .|+-.-..+|++=++.+
T Consensus 1364 LinsfK-----~~daaellrllVdy~rl~eA~dLlsEive~~lg~gsqyf-~---~~~pvsi~~wlpissiD~ll~~L~~ 1434 (1480)
T KOG4521|consen 1364 LINSFK-----NNDAAELLRLLVDYERLSEALDLLSEIVEQELGQGSQYF-A---TWLPVSIIDWLPISSIDRLLRKLSL 1434 (1480)
T ss_pred HHHHHh-----cCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcccchhh-h---hhccccceeeeehhhHHHHHHHhhc
Confidence 998888 567888888888888899999999999988888777753 1 1222222 27777777777777766
Q ss_pred cCC
Q psy767 868 RHP 870 (902)
Q Consensus 868 ~~~ 870 (902)
..|
T Consensus 1435 ns~ 1437 (1480)
T KOG4521|consen 1435 NSP 1437 (1480)
T ss_pred cCC
Confidence 665
No 381
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=40.75 E-value=4.6e+02 Score=27.67 Aligned_cols=199 Identities=15% Similarity=0.107 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHC--------CCCCCH--HHHHHHHHhHHHHHHHHHcCCHH---HHHHHHHHhh
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQ--------GIEPNR--VTYQQLISNSKLISKYCQDGNIE---GATKILEFMR 151 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~--------g~~pd~--~t~~~ll~~~~li~~~~~~g~~~---~A~~l~~~m~ 151 (902)
.||.-...+.+..+++.|..++++..+- ...|+. --+..+ ..|+.+|...+..+ +|..+++.+.
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL---~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL---RLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH---HHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 4666666555554788887777654321 223333 111111 33478888777655 4555666663
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCChhHHHHHHHhcccCCCccc
Q psy767 152 DKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGY---AKHGDMDSIKTKIPSLKPQSELFL 228 (902)
Q Consensus 152 ~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~---~~~g~~~~a~~l~~~~~~~~~~~~ 228 (902)
.. .+-...+|-.-|..+.+.++.+.+.+.+..|...-.. ....+..++..+ ..... ..+...++.+......+.
T Consensus 115 ~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~~~~-~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 115 SE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILHHIKQLAEKSP-ELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred Hh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHhCCC
Confidence 32 2223456666677777799999999999999986221 334555555544 44333 345555555544333332
Q ss_pred hh---hHHHHHHHHHh--c------CCHHHHHHHHHHHHH-CCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHH
Q psy767 229 CF---SFQLTNLLILV--S------SDMASAEGILTMMSQ-AGLEPSAQTYTKL-------MCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 229 ~~---~~~~~~~~~~~--~------g~~~~A~~l~~~m~~-~g~~pd~~ty~~L-------I~a~~~~g~~~~A~~lf~~ 289 (902)
.. ...++..++.. . ..++.+..++....+ .+.+.+..+-.++ ...+.+.+++++|.++|+-
T Consensus 192 ~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 192 EDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred hhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 22 11111122211 1 125556666664433 3334444443333 2346678899999999984
No 382
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=40.71 E-value=31 Score=22.57 Aligned_cols=22 Identities=23% Similarity=0.019 Sum_probs=9.4
Q ss_pred HHHHHHHcCChHHHHHHHHHcc
Q psy767 384 IIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 384 li~~~~~~g~~~~A~~l~~~m~ 405 (902)
+...+...|++++|.+.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444444444444443
No 383
>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85. Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.
Probab=40.70 E-value=11 Score=39.74 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||.+|.+.+++++||||
T Consensus 263 ~~l~~~p~~R~~~~~~l~~~~f 284 (284)
T cd07836 263 RLLQLNPELRISAHDALQHPWF 284 (284)
T ss_pred HHhcCCcccCCCHHHHhcCCCC
Confidence 8999999999999999999998
No 384
>KOG1586|consensus
Probab=40.54 E-value=3.5e+02 Score=27.78 Aligned_cols=158 Identities=9% Similarity=0.075 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHH------HHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHh----hhCCCCCCHHHHHHH
Q psy767 96 NEHTFSPTDFLAK------LESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFM----RDKTFPISEGVFNAL 165 (902)
Q Consensus 96 ~g~~~~A~~l~~~------M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m----~~~~~~p~~~~yn~L 165 (902)
.+++++|-++|.+ |.+.. ..-...|--. ...+.+.|+-++|-..|-++ ++-+..--+.....-
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w-~~AG~aflka------A~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~a 99 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNW-SAAGDAFLKA------ADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKA 99 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHH------HHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHH
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCH
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDM 245 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 245 (902)
|..|...|++..|-+..-++-+. .+.+..-+--.|..|-..++|-...+.-...-+ .+.-+.......+++
T Consensus 100 ieIyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK--------C~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 100 IEIYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVSSANK--------CLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH--------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH
Q psy767 246 ASAEGILTMMSQAGLEPSAQTYTK 269 (902)
Q Consensus 246 ~~A~~l~~~m~~~g~~pd~~ty~~ 269 (902)
..|..+|++.....+..+.--|..
T Consensus 171 ~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred HHHHHHHHHHHHHhccchHHHhHH
No 385
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=40.39 E-value=12 Score=41.03 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=23.2
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 876 (902)
+||+.||.+|+ +++++++||||.++.
T Consensus 261 ~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~~ 291 (340)
T PTZ00426 261 KLLSHDLTKRYGNLKKGAQNVKEHPWFGNID 291 (340)
T ss_pred HHcccCHHHcCCCCCCCHHHHHcCCCcCCCC
Confidence 78889999997 899999999998864
No 386
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=40.20 E-value=13 Score=40.55 Aligned_cols=26 Identities=35% Similarity=0.763 Sum_probs=23.6
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 876 (902)
+||+.||.+|. +.+++++||||.+..
T Consensus 244 ~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~ 274 (332)
T cd05614 244 KLLRKDPKKRLGAGPQGASEIKEHPFFKGLD 274 (332)
T ss_pred HHcCCCHHHcCCCCCCCHHHHHcCCCcCCCC
Confidence 89999999999 889999999998754
No 387
>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio
Probab=40.17 E-value=12 Score=39.56 Aligned_cols=22 Identities=59% Similarity=1.275 Sum_probs=21.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||..|.+++++++||||
T Consensus 265 ~~l~~~p~~Rp~~~eil~~~~f 286 (286)
T cd07847 265 GCLQMDPTERLSCEELLEHPYF 286 (286)
T ss_pred HHhcCCccccCCHHHHhcCCCC
Confidence 8999999999999999999998
No 388
>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the
Probab=40.14 E-value=12 Score=40.31 Aligned_cols=22 Identities=41% Similarity=0.915 Sum_probs=21.3
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||-+|.+++++++||||
T Consensus 295 ~~l~~~P~~Rps~~eil~~~~f 316 (316)
T cd07842 295 KLLEYDPTKRITAEEALEHPYF 316 (316)
T ss_pred HHhcCCcccCcCHHHHhcCCCC
Confidence 7999999999999999999998
No 389
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=39.72 E-value=3.5e+02 Score=25.98 Aligned_cols=117 Identities=13% Similarity=0.007 Sum_probs=65.7
Q ss_pred CCchHHHHHHHHHHHCCCCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhCCC
Q psy767 97 EHTFSPTDFLAKLESQGIEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK-TFPISEGVFNALIYGHSQAND 174 (902)
Q Consensus 97 g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~~yn~Li~~~~~~g~ 174 (902)
+....+...+.......... ....+... ...+...+++..+...+...... ........+..+...+...+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLL------ALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK 110 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHH------HHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh
Confidence 44455555555554432221 23445555 66677777777777777766542 223445566666666777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCChhHHHHHHHhc
Q psy767 175 MASAEGILTMMSQAGLEPSAQTYTKLMC-GYAKHGDMDSIKTKIPSL 220 (902)
Q Consensus 175 ~~~A~~l~~~M~~~g~~pd~~ty~~ll~-a~~~~g~~~~a~~l~~~~ 220 (902)
...+.+.+.........+ ......... .+...|+++.+...+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 111 YEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777654333 111222222 556666666666665555
No 390
>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi
Probab=39.47 E-value=13 Score=39.38 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=25.6
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 880 (902)
+||+.||.+|+ +++++++||||.++.....
T Consensus 232 ~~l~~~p~~R~~~~~~~~~~~~~h~~~~~~~~~~~ 266 (279)
T cd05633 232 GLLQRDVSKRLGCLGRGAQEVKEHVFFKGIDWQQV 266 (279)
T ss_pred HHhcCCHHHhcCCCCCCHHHHHhCccccCCCHhHH
Confidence 78999999999 5999999999988765543
No 391
>KOG0599|consensus
Probab=38.96 E-value=9.7 Score=39.24 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=21.7
Q ss_pred CCCCCCcchhhhHHHhhcCCCcc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFN 873 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~ 873 (902)
+||..||-.|++.++-|.||||.
T Consensus 265 rlLqVdp~~Ritake~LaHpff~ 287 (411)
T KOG0599|consen 265 RLLQVDPTKRITAKEALAHPFFI 287 (411)
T ss_pred HHHeeCchhcccHHHHhcChHHH
Confidence 78999999999999999999993
No 392
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=38.93 E-value=14 Score=40.79 Aligned_cols=27 Identities=44% Similarity=0.714 Sum_probs=24.1
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+||+.||-+|.+.+++++||||.....
T Consensus 297 ~mL~~dP~~R~t~~e~l~hp~~~~~~~ 323 (359)
T cd07876 297 KMLVIDPDKRISVDEALRHPYITVWYD 323 (359)
T ss_pred HHhccCcccCCCHHHHhcCchhhhhcC
Confidence 899999999999999999999975443
No 393
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=38.82 E-value=11 Score=40.90 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=22.6
Q ss_pred CCCCCCcchhh-------hHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRW-------SCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 876 (902)
+||+.||-+|. +.+++++||||.++.
T Consensus 229 ~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~~~ 261 (321)
T cd05591 229 AFMTKNPNKRLGCVASQGGEDAIKQHPFFKEID 261 (321)
T ss_pred HHhccCHHHcCCCCCCCCCHHHHhcCCccCCCC
Confidence 68889999998 889999999997753
No 394
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.58 E-value=1.1e+02 Score=27.12 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=28.9
Q ss_pred CCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCC
Q psy767 463 QPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANIN 502 (902)
Q Consensus 463 ~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~ 502 (902)
.|=.||.|+ +++-+-+|...++|+++++-|...+-.+
T Consensus 58 ~~~sGy~Pt---ViD~lrRC~T~EEALEVInylek~GEIt 94 (128)
T PF09868_consen 58 DDFSGYNPT---VIDYLRRCKTDEEALEVINYLEKRGEIT 94 (128)
T ss_pred CCccCCCCh---HHHHHHHhCcHHHHHHHHHHHHHhCCCC
Confidence 344677764 5666789999999999999999988665
No 395
>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I
Probab=38.53 E-value=11 Score=40.74 Aligned_cols=26 Identities=27% Similarity=0.672 Sum_probs=22.9
Q ss_pred CCCCCCcchhhhH-HHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSC-DQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ 876 (902)
+||+.||.+|.++ +++++||||.+..
T Consensus 229 ~~l~~dP~~R~~~~~~~~~h~~f~~~~ 255 (316)
T cd05620 229 KLFERDPTRRLGVVGNIRGHPFFKTIN 255 (316)
T ss_pred HHccCCHHHcCCChHHHHcCCCcCCCC
Confidence 7899999999998 6888999998864
No 396
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=38.51 E-value=55 Score=20.39 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q psy767 350 TKLMCGYAKHGDMDSIRRLLA 370 (902)
Q Consensus 350 ~~Li~~y~~~g~~~~A~~~~~ 370 (902)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445667777777777777665
No 397
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.41 E-value=3.9e+02 Score=26.59 Aligned_cols=131 Identities=11% Similarity=0.057 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
...|..++.... .+.+ +.....+.+....-.-.-.++.+| .+...+..+|++++|..-++..... |....+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL----~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~l 124 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAAL----ELAKAEVEANNLDKAEAQLKQALAQ---TKDENL 124 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHH----HHHHHHHhhccHHHHHHHHHHHHcc---chhHHH
Confidence 344666666654 3333 555555555554322122223333 3366667777777777777655432 112333
Q ss_pred HH-----HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCC
Q psy767 163 NA-----LIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 163 n~-----Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~ 224 (902)
.. |-+.....|.+++|+++++.....+.. ......--..+...|+-++|..-+.......
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33 335556677777777777765554321 1112222345667777777777777666654
No 398
>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the
Probab=38.30 E-value=13 Score=39.62 Aligned_cols=22 Identities=50% Similarity=0.939 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+||+.||-+|.+.+++++||||
T Consensus 272 ~~l~~~p~~R~t~~ell~~~~f 293 (293)
T cd07843 272 RLLTYDPAKRISAEDALKHPYF 293 (293)
T ss_pred HHhccCccccCCHHHHhcCCCC
Confidence 8999999999999999999998
No 399
>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10. Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing
Probab=38.19 E-value=15 Score=39.51 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.8
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFE 878 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+||+.||-+|.+++++++||||..-...
T Consensus 272 ~ml~~dp~~R~t~~~il~h~~f~~~~~~ 299 (309)
T cd07845 272 FLLMYDPKKRATAEEALESSYFKEKPLP 299 (309)
T ss_pred HHhcCChhhCcCHHHHhcChhhccCCCC
Confidence 7899999999999999999999755544
No 400
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=38.04 E-value=6.8e+02 Score=28.81 Aligned_cols=167 Identities=7% Similarity=-0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q psy767 129 KLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG 208 (902)
Q Consensus 129 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g 208 (902)
+++..++....+.-++.+..+|...|- +...|-.++.+|..+ ..+.-..+++++.+..+. |.+.-..|..-|-+ +
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-i 145 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-I 145 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-h
Q ss_pred ChhHHHHHHHhcccCCCc--cchhhHHHHHHHHHh-cCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 209 DMDSIKTKIPSLKPQSEL--FLCFSFQLTNLLILV-SSDMASAEGILTMMSQ-AGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 209 ~~~~a~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-~g~~~~A~~l~~~m~~-~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
+...+...|..+..+-.+ -....-..+..+... ..+.+....+...+.. .|...-.+.+.-+-.-|....++.+|+
T Consensus 146 k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai 225 (711)
T COG1747 146 KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAI 225 (711)
T ss_pred chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHH
Q ss_pred HHHHHhccCCCCCCHH
Q psy767 285 RLLAQSGSSLVNGDYL 300 (902)
Q Consensus 285 ~lf~~m~~~~~~p~~~ 300 (902)
+++..+.+......+.
T Consensus 226 ~Ilk~il~~d~k~~~a 241 (711)
T COG1747 226 RILKHILEHDEKDVWA 241 (711)
T ss_pred HHHHHHhhhcchhhhH
No 401
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=37.85 E-value=14 Score=40.80 Aligned_cols=25 Identities=44% Similarity=0.973 Sum_probs=23.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (902)
+||+.||.+|.+++++++||||..-
T Consensus 310 ~~l~~~P~~Rpt~~ell~hp~~~~~ 334 (353)
T PLN00034 310 CCLQREPAKRWSAMQLLQHPFILRA 334 (353)
T ss_pred HHccCChhhCcCHHHHhcCcccccC
Confidence 7999999999999999999999774
No 402
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=37.62 E-value=7.9e+02 Score=29.47 Aligned_cols=64 Identities=6% Similarity=0.017 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCC-------HHHHHHHHHHhhhC
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGN-------IEGATKILEFMRDK 153 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~-------~~~A~~l~~~m~~~ 153 (902)
+...| .+|-.|.|+|++++|.++..+... ........|... +..|+...+ -+....-|+.....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~------l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTY------LKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHH------HHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHH------HHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 44456 677889999999999999966554 234444456666 777776432 12444555554443
No 403
>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.
Probab=37.35 E-value=14 Score=38.83 Aligned_cols=22 Identities=50% Similarity=0.841 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||-+|.+.+++++||||
T Consensus 261 ~~l~~~P~~R~~~~~~l~~~~~ 282 (282)
T cd07831 261 KLLAYDPDERITAKQALRHPYF 282 (282)
T ss_pred HHhccCcccccCHHHHhhCCCC
Confidence 8999999999999999999998
No 404
>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the
Probab=37.26 E-value=13 Score=38.29 Aligned_cols=22 Identities=36% Similarity=0.818 Sum_probs=20.7
Q ss_pred CCCCCCcchhhhH---HHhhcCCCc
Q psy767 851 RCLDKDPLRRWSC---DQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~---~~~~~~~~~ 872 (902)
+|++.||.+|.+. +++++||||
T Consensus 226 ~~l~~~p~~R~~~~~~~~l~~~~~f 250 (250)
T cd05123 226 GLLQKDPTKRLGSGGAEEIKAHPFF 250 (250)
T ss_pred HHhcCCHhhCCCcccHHHHHhCCCC
Confidence 6888999999999 999999998
No 405
>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti
Probab=37.21 E-value=13 Score=39.37 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=25.3
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFE 878 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+|++.||.+|.+++++++||||.+..+.
T Consensus 244 ~~l~~~p~~Rps~~~il~~~~~~~~~~~ 271 (280)
T cd06611 244 SCLVKDPDDRPTAAELLKHPFVSDQSDN 271 (280)
T ss_pred HHhccChhhCcCHHHHhcChhhcccchh
Confidence 7999999999999999999999887543
No 406
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=37.18 E-value=14 Score=39.50 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=24.4
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCCCCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGYYFE 878 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 878 (902)
+||+.||.+|. +++++++||||..+...
T Consensus 231 ~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~~~ 263 (291)
T cd05612 231 KLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWD 263 (291)
T ss_pred HHcCCCHHHccCCccCCHHHHhcCccccCCCHH
Confidence 78999999999 59999999999876654
No 407
>PHA03210 serine/threonine kinase US3; Provisional
Probab=36.55 E-value=13 Score=43.38 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=23.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (902)
+||+.||-+|.+++++++||||.+-
T Consensus 436 kmL~~DP~~Rpsa~elL~hp~f~~~ 460 (501)
T PHA03210 436 KMLTFDWHLRPGAAELLALPLFSAE 460 (501)
T ss_pred HHhccCcccCcCHHHHhhChhhhcC
Confidence 7999999999999999999999764
No 408
>KOG0658|consensus
Probab=36.54 E-value=11 Score=40.45 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=26.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFE 878 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+.|..+|.+|.+.-+++.|||||-+|..
T Consensus 288 ~~L~Y~P~~R~~~~~~l~h~fFdelr~~ 315 (364)
T KOG0658|consen 288 KLLQYSPSKRLSALEALAHPFFDELRDP 315 (364)
T ss_pred HHhccChhhcCCHHHHhcchhhHHhhCc
Confidence 7788999999999999999999999987
No 409
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=36.48 E-value=13 Score=40.40 Aligned_cols=26 Identities=31% Similarity=0.705 Sum_probs=24.0
Q ss_pred CCCCCCcchhhhH-----HHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSC-----DQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 876 (902)
+||+.||.+|.+. +++++||||.+..
T Consensus 229 ~~l~~dP~~R~s~~~~~~~~ll~~~~~~~~~ 259 (318)
T cd05570 229 SFLTKNPEKRLGCLPTGEQDIKGHPFFREID 259 (318)
T ss_pred HHccCCHHHcCCCCCCCHHHHhcCCCcCCCC
Confidence 8999999999999 9999999998753
No 410
>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both
Probab=36.39 E-value=15 Score=38.83 Aligned_cols=22 Identities=41% Similarity=0.736 Sum_probs=21.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||.+|.+.+++++||||
T Consensus 266 ~~l~~dp~~Rp~~~~il~~~~~ 287 (287)
T cd07838 266 KMLTFNPHKRISAFEALQHPYF 287 (287)
T ss_pred HHhccCCccCCCHHHHhcCcCC
Confidence 8999999999999999999998
No 411
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=36.34 E-value=17 Score=38.87 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=25.9
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+|++.||-+|.+.+++++||||.......
T Consensus 253 ~~l~~~P~~Rps~~~ll~~~~~~~~~~~~ 281 (297)
T cd06659 253 RMLTREPQERATAQELLDHPFLLQTGLPE 281 (297)
T ss_pred HHhcCCcccCcCHHHHhhChhhccCCCcc
Confidence 78899999999999999999998877644
No 412
>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is
Probab=36.03 E-value=17 Score=38.71 Aligned_cols=30 Identities=37% Similarity=0.597 Sum_probs=27.2
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+||+.||-+|.+.+++++||||.+-....+
T Consensus 264 ~~l~~~P~~R~s~~e~l~~~~~~~~~~~~~ 293 (298)
T cd07841 264 RLLTLNPNKRITARQALEHPYFSNDPAPTP 293 (298)
T ss_pred HHhcCCcccCcCHHHHhhCccccCCCCCCC
Confidence 899999999999999999999988776654
No 413
>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta. Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig
Probab=35.87 E-value=8.1 Score=42.14 Aligned_cols=29 Identities=34% Similarity=0.594 Sum_probs=26.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+|++.||..|.+.+++++||||.+.+...
T Consensus 290 ~~l~~dP~~Rpta~e~l~~~~~~~~~~~~ 318 (328)
T cd08226 290 LCLQQDPEKRPSASSLLSHAFFKQVKEQT 318 (328)
T ss_pred HHccCCcccCCCHHHHhhCHHHHHHHHhc
Confidence 89999999999999999999998877653
No 414
>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic
Probab=35.81 E-value=16 Score=39.16 Aligned_cols=22 Identities=41% Similarity=0.872 Sum_probs=21.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+||..||.+|.++++++.||||
T Consensus 290 ~~l~~~p~~R~t~~ell~~~~f 311 (311)
T cd07866 290 KLLSLDPYKRLTASDALEHPYF 311 (311)
T ss_pred HHcccCcccCcCHHHHhcCCCC
Confidence 8999999999999999999998
No 415
>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase. Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm
Probab=35.44 E-value=17 Score=38.75 Aligned_cols=23 Identities=43% Similarity=0.816 Sum_probs=22.1
Q ss_pred CCCCCCcchhhhHHHhhcCCCcc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFN 873 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~ 873 (902)
+||+.||.+|.+.+++++||||+
T Consensus 273 ~~l~~~P~~R~~~~eil~~~~~~ 295 (295)
T cd07837 273 KMLRYDPAKRISAKAALTHPYFD 295 (295)
T ss_pred HHccCChhhcCCHHHHhcCCCcC
Confidence 89999999999999999999995
No 416
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=35.26 E-value=16 Score=39.86 Aligned_cols=26 Identities=35% Similarity=0.746 Sum_probs=22.7
Q ss_pred CCCCCCcchhhhH------HHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSC------DQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~------~~~~~~~~~~~~~ 876 (902)
+||+.||.+|.+| ++.++||||.++.
T Consensus 238 ~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~~~ 269 (329)
T cd05618 238 SFLNKDPKERLGCHPQTGFADIQGHPFFRNVD 269 (329)
T ss_pred HHhcCCHHHcCCCCCCCCHHHHhcCCCCCCCC
Confidence 7899999999985 7999999997753
No 417
>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do
Probab=34.97 E-value=13 Score=38.58 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=22.2
Q ss_pred CCCCCCcchhh---hHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRW---SCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~---~~~~~~~~~~~~~~ 875 (902)
+||+.||.+|. ++++++.||||.++
T Consensus 230 ~~l~~~p~~R~~~~~~~~~l~~~~~~~~ 257 (260)
T cd05611 230 RLLCMDPAKRLGANGYQEIKSHPFFKSI 257 (260)
T ss_pred HHccCCHHHccCCCcHHHHHcChHhhcC
Confidence 89999999999 55899999999765
No 418
>KOG0276|consensus
Probab=34.81 E-value=3.3e+02 Score=31.85 Aligned_cols=102 Identities=17% Similarity=0.114 Sum_probs=70.8
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q psy767 133 KYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS 212 (902)
Q Consensus 133 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~ 212 (902)
...+.|+++.|.++..+. -+..-|..|-.+....|++..|.+.|..... |..|+-.+...|+-+.
T Consensus 646 lal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 345677777777665442 2457899999999999999999999886543 5677777888888775
Q ss_pred HHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q psy767 213 IKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMM 255 (902)
Q Consensus 213 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m 255 (902)
...+=...++.+. .+.....+...|+++++.+++-+-
T Consensus 711 l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 5555444444332 233445566789999988877654
No 419
>KOG0671|consensus
Probab=34.79 E-value=17 Score=39.43 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.3
Q ss_pred CCCCcchhhhHHHhhcCCCccCCCC
Q psy767 853 LDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
|-.||.+|++-...|.||||+..+.
T Consensus 390 L~fDP~~RiTl~EAL~HpFF~~~~~ 414 (415)
T KOG0671|consen 390 LEFDPARRITLREALSHPFFARLTP 414 (415)
T ss_pred HccCccccccHHHHhcCHHhhcCCC
Confidence 4579999999999999999998764
No 420
>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin
Probab=34.74 E-value=16 Score=39.42 Aligned_cols=29 Identities=31% Similarity=0.717 Sum_probs=26.2
Q ss_pred CCCCCCcchhhh----HHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWS----CDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 879 (902)
+|+..||-+|.+ .+++++||||.+++...
T Consensus 267 ~~l~~~p~~R~s~~~~~~~ll~~~~~~~~~~~~ 299 (316)
T cd05574 267 KLLVKDPSKRLGSKRGAAEIKQHPFFRGVNWAL 299 (316)
T ss_pred HHccCCHhHCCCchhhHHHHHcCchhhcCChhh
Confidence 899999999999 99999999999877554
No 421
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=34.50 E-value=15 Score=40.02 Aligned_cols=26 Identities=35% Similarity=0.745 Sum_probs=22.5
Q ss_pred CCCCCCcchhhhH------HHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSC------DQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~------~~~~~~~~~~~~~ 876 (902)
+||+.||.+|.+| +++++||||.+..
T Consensus 238 ~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~~~ 269 (329)
T cd05588 238 GFLNKDPKERLGCHPQTGFRDIKSHPFFRNID 269 (329)
T ss_pred HHhccCHHHcCCCCCCCCHHHHhcCCCCCCCC
Confidence 7899999999874 7999999997753
No 422
>KOG0604|consensus
Probab=33.93 E-value=42 Score=35.37 Aligned_cols=60 Identities=25% Similarity=0.398 Sum_probs=44.2
Q ss_pred HhccccccccchHHHHhhh----hhh--hhHHHHHHHhhhhcCCCcccccCCCCCCCCCCCCCCCCCCCCcchhhhHHHh
Q psy767 793 VEHAIPISAFSSDYIQNGL----GSA--LTSDISKALGALTSDDLMPQPLQYVPSMFIPRGQPLRCLDKDPLRRWSCDQL 866 (902)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
.+||+.||+.-...|+++- ..+ -+|+-.|-|++.= |..+|.+|++.++.
T Consensus 265 S~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~L-------------------------Lkt~PteRlTI~~~ 319 (400)
T KOG0604|consen 265 SNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKL-------------------------LKTEPTERLTIEEV 319 (400)
T ss_pred ccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHH-------------------------hcCCchhheeHHHh
Confidence 4688999999998888875 111 4555555555532 45689999999999
Q ss_pred hcCCCccCCCC
Q psy767 867 LRHPYFNGYYF 877 (902)
Q Consensus 867 ~~~~~~~~~~~ 877 (902)
+.|||.+....
T Consensus 320 m~hpwi~~~~~ 330 (400)
T KOG0604|consen 320 MDHPWINQYEA 330 (400)
T ss_pred hcCchhccccc
Confidence 99999977654
No 423
>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1. Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto
Probab=33.92 E-value=15 Score=38.56 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=21.0
Q ss_pred CCCCCCcchhhhH----HHhhcCCCc
Q psy767 851 RCLDKDPLRRWSC----DQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~----~~~~~~~~~ 872 (902)
+||+.||..|.++ +++++||||
T Consensus 255 ~~l~~~p~~R~~~~~~~~~ll~~~~~ 280 (280)
T cd05581 255 KLLVLDPQDRLGVNEGYDELKAHPFF 280 (280)
T ss_pred HHhcCCHhhCCCcccCHHHHhcCCCC
Confidence 7889999999999 999999998
No 424
>KOG0198|consensus
Probab=33.90 E-value=21 Score=38.43 Aligned_cols=27 Identities=30% Similarity=0.794 Sum_probs=24.3
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+|+.+||-+|+++++||+||+-.+-..
T Consensus 258 ~C~~~~p~~Rpta~eLL~hpf~~~~~~ 284 (313)
T KOG0198|consen 258 KCFKRDPEKRPTAEELLEHPFLKQNSI 284 (313)
T ss_pred HHhhcCcccCcCHHHHhhChhhhcccc
Confidence 999999999999999999999866444
No 425
>KOG2297|consensus
Probab=33.88 E-value=6.1e+02 Score=27.07 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=36.0
Q ss_pred hHHhhcHHHHHHHhccccc---hhHHHHHHHHHH-HhcccCCCCC--CcCc-----ccccCccccccCCCCCCCCHHHHH
Q psy767 19 TEVSEATAEVTTVLGALGA---FLVLLVLLFVYL-NSKWCSEPSL--GPGN-----LPCEDPFSVHTGELDVPLDISHYN 87 (902)
Q Consensus 19 ~~~s~~~~~a~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~g~~--~~A~-----~~f~~~~~~~~~~~g~~pd~~~yn 87 (902)
.+..|..+.+.+.++..+. ..-+...+|..+ +.+...-|.. +++. -+|+.-+. ...+.|.+..++
T Consensus 40 ~~~~gdle~vak~ldssg~~l~~~rYgd~~fdil~~gg~~~pg~~~sddge~~t~~cvfda~e~----~E~i~~~~qvf~ 115 (412)
T KOG2297|consen 40 EDNAGDLELVAKSLDSSGNDLDYRRYGDILFDILFAGGRLQPGGVKSDDGERHTSYCVFDAEEK----REAIRNSVQVFQ 115 (412)
T ss_pred HhcCccHHHHHHHHHhccccccHHHHHHHHHHHHHHhcccCCCCccccccCccCceeEeecCch----HHHHHHHHHHHH
Confidence 3445677777777765533 233333444444 4444333321 1221 12322222 223567788889
Q ss_pred HHHHHHH
Q psy767 88 ALLRVYL 94 (902)
Q Consensus 88 ~li~~~~ 94 (902)
.+|+-|.
T Consensus 116 KliRRyk 122 (412)
T KOG2297|consen 116 KLIRRYK 122 (412)
T ss_pred HHHHHHH
Confidence 9998764
No 426
>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development
Probab=33.65 E-value=18 Score=37.85 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=21.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCcc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFN 873 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~ 873 (902)
+|+..||.+|.+.+++++||||+
T Consensus 243 ~~~~~~p~~Rp~~~eil~hp~~~ 265 (266)
T cd06651 243 GCIFVEARHRPSAEELLRHPFAQ 265 (266)
T ss_pred HHhcCChhhCcCHHHHhcCcccc
Confidence 68889999999999999999996
No 427
>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI
Probab=33.61 E-value=18 Score=38.17 Aligned_cols=22 Identities=50% Similarity=0.818 Sum_probs=21.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||-+|.+.+++++||||
T Consensus 265 ~~l~~~P~~Rp~~~~il~~~~~ 286 (286)
T cd07846 265 QCLRIDPDDRPSSSQLLHHEFF 286 (286)
T ss_pred HHhcCCcccchhHHHHhcCCCC
Confidence 8999999999999999999998
No 428
>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as
Probab=33.52 E-value=11 Score=40.17 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=24.1
Q ss_pred CCCCCCcchhhh-----HHHhhcCCCccCCCCC
Q psy767 851 RCLDKDPLRRWS-----CDQLLRHPYFNGYYFE 878 (902)
Q Consensus 851 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 878 (902)
+||+.||.+|.+ .+++++||||..+...
T Consensus 238 ~~l~~~p~~R~s~~~~~~~~~~~h~~~~~~~~~ 270 (285)
T cd05630 238 MLLCKDPKERLGCQGGGAREVKEHPLFKQINFK 270 (285)
T ss_pred HHhhcCHHHccCCCCCchHHHHcChhhhccCHH
Confidence 799999999999 6899999999775443
No 429
>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc
Probab=33.34 E-value=17 Score=38.35 Aligned_cols=22 Identities=45% Similarity=0.806 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||-+|.+.++.++||||
T Consensus 262 ~~l~~~P~~Rpt~~~il~~~~~ 283 (283)
T cd07835 262 KMLVYDPAKRISAKAALQHPYF 283 (283)
T ss_pred HHhcCChhhCcCHHHHhcCCCC
Confidence 8999999999999999999998
No 430
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=33.17 E-value=20 Score=38.11 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=25.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+|++.||-+|.+++++++||||.+.+.
T Consensus 251 ~~l~~~p~~Rpt~~~il~~~~~~~~~~ 277 (285)
T cd06648 251 RMLVRDPAQRATAAELLNHPFLAKAGP 277 (285)
T ss_pred HHcccChhhCcCHHHHccCcccccCCC
Confidence 899999999999999999999998775
No 431
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=33.09 E-value=62 Score=26.81 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=42.1
Q ss_pred HHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHH
Q psy767 479 LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHR 532 (902)
Q Consensus 479 ~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~ 532 (902)
+....+.++|+..+.....+...++.-..+...++.+++..|+ ..+++++--.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk-yr~~L~fA~~ 68 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK-YREMLAFALQ 68 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4577889999999999888765554455677889999999999 8888777543
No 432
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=33.08 E-value=15 Score=40.19 Aligned_cols=27 Identities=26% Similarity=0.504 Sum_probs=24.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+||..||-+|.+.+++++||||..-..
T Consensus 283 ~~L~~~P~~Rpt~~ell~h~~~~~~~~ 309 (331)
T cd06649 283 KCLIKNPAERADLKMLMNHTFIKRSEV 309 (331)
T ss_pred HHccCCcccCCCHHHHhcChHHhhccc
Confidence 899999999999999999999976443
No 433
>KOG1258|consensus
Probab=33.07 E-value=8.6e+02 Score=28.52 Aligned_cols=411 Identities=11% Similarity=0.063 Sum_probs=212.6
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY-QQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~-~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
+-..|.++|..--.....+.+..+++.+... -|...-| ... ...=.+.|..+.+.++|++-.. +++-+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kf------A~~E~klg~~~~s~~Vfergv~-aip~Svd 114 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKF------ADYEYKLGNAENSVKVFERGVQ-AIPLSVD 114 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHH------HHHHHHhhhHHHHHHHHHHHHH-hhhhHHH
Confidence 3445666666554445556666777777632 4554432 222 4444577889999999988654 4666777
Q ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHH
Q psy767 161 VFNALIYGHS-QANDMASAEGILTMMSQA-GLEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNL 237 (902)
Q Consensus 161 ~yn~Li~~~~-~~g~~~~A~~l~~~M~~~-g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 237 (902)
.|...+.-++ ..|+.+...+.|+..... |..- +..-|...|.--...+++.....+++.+.+.....-...+..+..
T Consensus 115 lW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~ 194 (577)
T KOG1258|consen 115 LWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQ 194 (577)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHH
Confidence 7777665544 457888888888877654 4322 344666777777778888888888888877543333323322222
Q ss_pred HHHh-----cCCHHHHHHHHHHHHHC---C-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHhccCCCCCCHHHHHHHHH
Q psy767 238 LILV-----SSDMASAEGILTMMSQA---G-LEPSAQTYTKLMCGYAK-HGDMDSVRRLLAQSGSSLVNGDYLDIIHALA 307 (902)
Q Consensus 238 ~~~~-----~g~~~~A~~l~~~m~~~---g-~~pd~~ty~~LI~a~~~-~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~ 307 (902)
.+.. ....+.+.++-...... + ..+....+..-+.--.. .+..+++.. +..-.+
T Consensus 195 ~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~----------------~l~~~~ 258 (577)
T KOG1258|consen 195 LLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKT----------------ILKRIV 258 (577)
T ss_pred HHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHH----------------HHHHHH
Confidence 2222 22233333332222210 0 00001111110000000 000111111 110000
Q ss_pred HcCCc---ccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCccc--HH
Q psy767 308 VSGHG---EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD--YL 382 (902)
Q Consensus 308 ~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~--~~ 382 (902)
..... ...........+-. .+.....+.+.-..++..+|...++--...|+.+.+.-+|++.....-.-+ |-
T Consensus 259 ~~~~~~~~~s~~~~~kr~~fE~---~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWi 335 (577)
T KOG1258|consen 259 SIHEKVYQKSEEEEEKRWGFEE---GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWI 335 (577)
T ss_pred HHHHHHHHhhHhHHHHHHhhhh---hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHH
Confidence 00000 00000000000000 000000111122234678899999999999999999999998533222222 55
Q ss_pred HHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH-HHH-HHHH-HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhh
Q psy767 383 DIIHALAVSGHGEYIDEIISKIQPGVGYSADAA-NHI-YHLI-NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMV 459 (902)
Q Consensus 383 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~i-~~l~-~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~ 459 (902)
-.+.-....|+.+-|-.++..-.+ .-++-... .++ ..++ ..|+.+.|..+++.+.+.+ |...
T Consensus 336 ky~~~m~~~~~~~~~~~~~~~~~~-i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v----------- 400 (577)
T KOG1258|consen 336 KYARWMESSGDVSLANNVLARACK-IHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY---PGLV----------- 400 (577)
T ss_pred HHHHHHHHcCchhHHHHHHHhhhh-hcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC---Cchh-----------
Confidence 666666666888888887776655 22222222 233 3334 6789999999999999875 2211
Q ss_pred hcCCCCCccccchHHHHHHHHhcCChHHHH---HHHHHHHHccCCCCCccchHHHHHHHHH-----HcCCCHHHHHHHHH
Q psy767 460 KTNQPGVGYSADAANHIYHLINKGQIDAAY---RIVNTLARSANINGEQLPVGGFLVRHMV-----KTNQPIDKVLAVCH 531 (902)
Q Consensus 460 ~~~~~~~g~~~~~~~li~~~~k~g~~~~A~---~l~~~m~~~~~~~~~~~~~~n~li~~~~-----~~g~~~~~A~~l~~ 531 (902)
-....-+....+.|+.+.+. .++........ +....+.+.--++ -.++ .+.|..++.
T Consensus 401 ----------~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~----~~~i~~~l~~~~~r~~~~i~~d-~~~a~~~l~ 465 (577)
T KOG1258|consen 401 ----------EVVLRKINWERRKGNLEDANYKNELYSSIYEGKE----NNGILEKLYVKFARLRYKIRED-ADLARIILL 465 (577)
T ss_pred ----------hhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc----CcchhHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 01222344467888888887 33333333222 2222333222222 2344 889999999
Q ss_pred HHHHCCCCCChhhHHHHHHH
Q psy767 532 RLTDENLHPRAFNLAVLIKA 551 (902)
Q Consensus 532 ~m~~~g~~Pd~~t~~~ll~a 551 (902)
+|.+. +.++..-|..+++-
T Consensus 466 ~~~~~-~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 466 EANDI-LPDCKVLYLELIRF 484 (577)
T ss_pred Hhhhc-CCccHHHHHHHHHH
Confidence 98875 44555556666644
No 434
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=32.89 E-value=19 Score=38.95 Aligned_cols=25 Identities=32% Similarity=0.727 Sum_probs=22.6
Q ss_pred CCCCCCcchhh---hHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRW---SCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~---~~~~~~~~~~~~~~ 875 (902)
+||+.||-+|+ +++++++||||...
T Consensus 226 ~~L~~dp~~R~~~~~~~e~l~hp~~~~~ 253 (312)
T cd05585 226 GLLSRDPTRRLGYNGAQEIKNHPFFSQL 253 (312)
T ss_pred HHcCCCHHHcCCCCCHHHHHcCCCcCCC
Confidence 79999999998 58999999999876
No 435
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=32.84 E-value=19 Score=39.75 Aligned_cols=25 Identities=44% Similarity=0.733 Sum_probs=23.1
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (902)
+||+.||.+|.+.+++++||||+..
T Consensus 293 ~~L~~dP~~R~t~~eiL~~~~~~~~ 317 (353)
T cd07850 293 KMLVIDPEKRISVDDALQHPYINVW 317 (353)
T ss_pred HHcCCChhhCcCHHHHhcChhHhhc
Confidence 9999999999999999999998643
No 436
>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their
Probab=32.81 E-value=19 Score=37.58 Aligned_cols=22 Identities=45% Similarity=0.878 Sum_probs=21.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.+|.+|-++.++++||||
T Consensus 246 ~~l~~~p~~R~~~~~ll~~~~~ 267 (268)
T cd06630 246 RCLELQPEDRPPSRELLKHPVF 267 (268)
T ss_pred HHcCCCcccCcCHHHHhcCccc
Confidence 7999999999999999999998
No 437
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=32.71 E-value=2e+02 Score=29.17 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=55.8
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC--CCCCCHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK--TFPISEGVFN 163 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~yn 163 (902)
-+..++.+.+.+...+++...++-.+... -|...-..+ +..||-.|++++|..-++..-.. ...+-...|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~Rhfl------fqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFL------FQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHH------HHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 45567788889999999999988877632 245555566 99999999999998777665432 2345567788
Q ss_pred HHHHH
Q psy767 164 ALIYG 168 (902)
Q Consensus 164 ~Li~~ 168 (902)
.+|.+
T Consensus 77 ~lir~ 81 (273)
T COG4455 77 HLIRC 81 (273)
T ss_pred HHHHH
Confidence 77765
No 438
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=32.30 E-value=1.1e+02 Score=19.90 Aligned_cols=27 Identities=15% Similarity=-0.016 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777778888888887777654
No 439
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=32.29 E-value=19 Score=37.70 Aligned_cols=22 Identities=36% Similarity=0.779 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||.+|.+.+++++||||
T Consensus 251 ~~l~~~p~~Rpt~~~il~~~~~ 272 (272)
T cd06637 251 SCLVKNHSQRPTTEQLMKHPFI 272 (272)
T ss_pred HHcCCChhhCCCHHHHhhCCCC
Confidence 8999999999999999999998
No 440
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=32.18 E-value=17 Score=39.45 Aligned_cols=26 Identities=31% Similarity=0.682 Sum_probs=23.2
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 876 (902)
+||+.||.+|+ +++++++||||.+..
T Consensus 229 ~~L~~dP~~R~~~~~~~~~~il~h~~~~~~~ 259 (325)
T cd05594 229 GLLKKDPKQRLGGGPDDAKEIMQHKFFAGIV 259 (325)
T ss_pred HHhhcCHHHhCCCCCCCHHHHhcCCCcCCCC
Confidence 68999999998 899999999998753
No 441
>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the
Probab=31.98 E-value=20 Score=37.69 Aligned_cols=22 Identities=41% Similarity=0.872 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||.+|.+.++++.||||
T Consensus 261 ~~l~~~P~~Rp~~~~~l~~p~~ 282 (282)
T cd07829 261 KMLQYNPAKRISAKEALKHPYF 282 (282)
T ss_pred HhhccCcccCCCHHHHhhCcCC
Confidence 8999999999999999999998
No 442
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=31.91 E-value=17 Score=37.67 Aligned_cols=22 Identities=55% Similarity=0.892 Sum_probs=21.2
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||.+|.+++++++||||
T Consensus 235 ~~l~~~P~~Rps~~~il~~~~~ 256 (256)
T cd06612 235 KCLVKDPEERPSAIQLLQHPFI 256 (256)
T ss_pred HHHhcChhhCcCHHHHhcCCCC
Confidence 7999999999999999999998
No 443
>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.
Probab=31.85 E-value=19 Score=37.28 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=21.1
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.+|.+|.+++++++||||
T Consensus 236 ~~l~~~p~~Rpt~~~ll~~~~~ 257 (257)
T cd08225 236 QLFKVSPRDRPSITSILKRPFL 257 (257)
T ss_pred HHhccChhhCcCHHHHhhCCCC
Confidence 7899999999999999999997
No 444
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=31.85 E-value=1.2e+02 Score=25.25 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=23.9
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCC-H-HHHHHHHHHHHhCCCHHHHHHH
Q psy767 136 QDGNIEGATKILEFMRDKTFPIS-E-GVFNALIYGHSQANDMASAEGI 181 (902)
Q Consensus 136 ~~g~~~~A~~l~~~m~~~~~~p~-~-~~yn~Li~~~~~~g~~~~A~~l 181 (902)
....-+.|+..|....++-..|. . .+...|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665544322211 1 3455566666666666665554
No 445
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=31.76 E-value=15 Score=40.10 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=24.0
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
+||+.||.+|.+.+++++||||..-.
T Consensus 281 ~~L~~~P~~Rpt~~ell~h~~~~~~~ 306 (333)
T cd06650 281 KCLIKNPAERADLKQLMVHAFIKRSE 306 (333)
T ss_pred HhccCCcccCcCHHHHhhCHHHhcCc
Confidence 89999999999999999999997643
No 446
>KOG1550|consensus
Probab=31.69 E-value=6.1e+02 Score=29.96 Aligned_cols=161 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHH-HHHCCCchHHHHHHHHHHH-------CCCCCCHHHHHHHHHhHHHHHHHHHcC-----CHHHHHHHHHHhhhCC
Q psy767 88 ALLRV-YLDNEHTFSPTDFLAKLES-------QGIEPNRVTYQQLISNSKLISKYCQDG-----NIEGATKILEFMRDKT 154 (902)
Q Consensus 88 ~li~~-~~~~g~~~~A~~l~~~M~~-------~g~~pd~~t~~~ll~~~~li~~~~~~g-----~~~~A~~l~~~m~~~~ 154 (902)
....+ +....+++.|+.+|+.+.+ .| +.....-+ -.+|.+.. +.+.|..++...-..|
T Consensus 253 ~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~l------g~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 253 CYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGL------GRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred HHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHH------HHHHhcCCCCccccHHHHHHHHHHHHhcC
Q ss_pred CCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCChhHHHHHHHhcccCCCccchhh
Q psy767 155 FPISEGVFNALIYGHSQ-ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA--KHGDMDSIKTKIPSLKPQSELFLCFS 231 (902)
Q Consensus 155 ~~p~~~~yn~Li~~~~~-~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~--~~g~~~~a~~l~~~~~~~~~~~~~~~ 231 (902)
.|+....-..+.-... ..+...|.++|...-..| .+...-+.+++-... -..+...|..++...-..+.......
T Consensus 324 -~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~ 401 (552)
T KOG1550|consen 324 -NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYL 401 (552)
T ss_pred -CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q psy767 232 FQLTNLLILVSSDMASAEGILTMMSQAGLE 261 (902)
Q Consensus 232 ~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~ 261 (902)
...+..... +..+.+.-.+..+...|..
T Consensus 402 ~~~~~~~g~--~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 402 LGAFYEYGV--GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHcc--ccccHHHHHHHHHHHhhhh
No 447
>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of
Probab=31.63 E-value=19 Score=38.01 Aligned_cols=29 Identities=34% Similarity=0.614 Sum_probs=25.0
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 879 (902)
+||+.||.+|. +++++++||||.++....
T Consensus 231 ~~l~~~p~~R~~~~~~~~~~ll~h~~~~~~~~~~ 264 (277)
T cd05577 231 ALLQKDPEKRLGCRGGSADEVREHPLFKDLNWRR 264 (277)
T ss_pred HHccCChhHccCCCcccHHHHHhChhhhcCChhh
Confidence 78899999999 999999999998766443
No 448
>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re
Probab=31.61 E-value=18 Score=37.45 Aligned_cols=25 Identities=32% Similarity=0.755 Sum_probs=23.1
Q ss_pred CCCCCCcchhhhH---HHhhcCCCccCC
Q psy767 851 RCLDKDPLRRWSC---DQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~~~---~~~~~~~~~~~~ 875 (902)
+|++.+|..|.++ +++++||||.++
T Consensus 236 ~~l~~~p~~Rpt~~~~~~~l~~~~~~~~ 263 (265)
T cd05579 236 KLLVPDPEKRLGAKSIEEIKNHPFFKGI 263 (265)
T ss_pred HHhcCCHhhcCCCccHHHHhcCccccCC
Confidence 7899999999999 999999999865
No 449
>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=31.42 E-value=16 Score=38.84 Aligned_cols=29 Identities=34% Similarity=0.709 Sum_probs=25.3
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 879 (902)
+|++.||.+|. .++++++||||..+..+.
T Consensus 245 ~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~~~ 278 (290)
T cd05613 245 RLLMKDPKKRLGCGPSDADEIKKHPFFQKINWDD 278 (290)
T ss_pred HHhcCCHHHhcCCCCCCHHHHHcCcccccCCHHH
Confidence 78999999998 889999999999887533
No 450
>KOG2114|consensus
Probab=31.42 E-value=1.1e+03 Score=29.09 Aligned_cols=182 Identities=14% Similarity=0.139 Sum_probs=116.1
Q ss_pred HHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q psy767 87 NALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALI 166 (902)
Q Consensus 87 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li 166 (902)
..-|..+.+...+.-|..+-+. .+..+ .+...+ ...--+-+.+.|++++|..-+-+-... +. =..+|
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~--d~~~~i--~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le-----~s~Vi 404 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDE--DTLAEI--HRKYGDYLYGKGDFDEATDQYIETIGF-LE-----PSEVI 404 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCH--HHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHccc-CC-----hHHHH
Confidence 3556666677777777776543 33333 333344 000133345789999998766543322 12 23466
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHH
Q psy767 167 YGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMA 246 (902)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 246 (902)
.-|.......+-..+++.+.+.|+. +...-+.||.+|.+.++.++..++.+... .|.. .+.....+.++.+.+-++
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 7777777778888899999999976 55555889999999999999888877766 2222 223455666667777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 247 SAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 247 ~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
+|..+-..... +...... .+-..|++++|++.+..|.-.
T Consensus 481 ~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence 77766554432 2333333 344568899999999876443
No 451
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=31.02 E-value=4.1e+02 Score=33.67 Aligned_cols=126 Identities=12% Similarity=0.188 Sum_probs=65.7
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHH-CCC--CCCHHHHHHHHHhHHHHHHHHH-cCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 88 ALLRVYLDNEHTFSPTDFLAKLES-QGI--EPNRVTYQQLISNSKLISKYCQ-DGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 88 ~li~~~~~~g~~~~A~~l~~~M~~-~g~--~pd~~t~~~ll~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
..|+.+...++|.+|+.+.+.-+- .++ .-|...|-.= +..+.+ -++.+----++..+.+.++. ...|.
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~n------i~~Fv~qi~~~~~lnLFls~L~~EDvt--~tmY~ 770 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLEN------IELFVEQIKDVDYLNLFLSSLRNEDVT--KTMYK 770 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHH------HHHHHHhcCCHHHHHHHHHhccccccc--ccccc
Confidence 556667788999888877654321 111 1123333332 444443 35555555555555555432 12222
Q ss_pred HHH------------HHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcC--ChhHHHHHHHhcccC
Q psy767 164 ALI------------YGHSQANDMASAEGILTMMSQAGLEPSAQT-YTKLMCGYAKHG--DMDSIKTKIPSLKPQ 223 (902)
Q Consensus 164 ~Li------------~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t-y~~ll~a~~~~g--~~~~a~~l~~~~~~~ 223 (902)
... ......+++....+.+.+..+. ..+... +..+|.+|++.+ ++++|++....+++.
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 771 DTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccccccccccccccCCCccccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 222 1112223444444444333332 233333 457888888888 888898888888866
No 452
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.98 E-value=5.5e+02 Score=25.66 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHH
Q psy767 484 QIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVK 518 (902)
Q Consensus 484 ~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~ 518 (902)
..+++.++.++|.+.-..||-+...--..|.++|.
T Consensus 154 ~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~ 188 (199)
T PF04090_consen 154 ELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCH 188 (199)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 44557777777776655555333333345555554
No 453
>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity
Probab=30.97 E-value=20 Score=37.30 Aligned_cols=25 Identities=48% Similarity=0.832 Sum_probs=23.1
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (902)
+|+..||.+|.+.+++++||||.++
T Consensus 239 ~~l~~~p~~Rpt~~~ll~~~~~~~~ 263 (265)
T cd06605 239 LCLIKDPRERPSYKELLEHPFIKKY 263 (265)
T ss_pred HHcCCCchhCcCHHHHhhCchhhcc
Confidence 6999999999999999999999664
No 454
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=30.95 E-value=3.2e+02 Score=24.92 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHH---HhhcC-cchhhHHHHHHHHH
Q psy767 762 IFAGNVLLDIYK---ATRQD-PNVVSHLEQLLNAF 792 (902)
Q Consensus 762 ~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~ 792 (902)
...-.+|-.|.. .+|+. +...++|.+++.+.
T Consensus 62 ~~~~~lL~~IL~nda~Ir~Llq~rl~eL~~li~~~ 96 (121)
T PRK10548 62 EQLRPMLRQILDNEAELKQLLQQRMDELSSLIGQS 96 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344466666665 55555 44444444444443
No 455
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=30.58 E-value=84 Score=22.82 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=13.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 165 LIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 165 Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666665543
No 456
>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They
Probab=30.45 E-value=21 Score=37.52 Aligned_cols=22 Identities=45% Similarity=0.862 Sum_probs=21.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||.+|.+.+++++||||
T Consensus 262 ~~l~~~P~~Rp~~~~ll~~~~~ 283 (283)
T cd05118 262 QMLHYDPHKRITAEQALAHPYF 283 (283)
T ss_pred HHhccCcccCcCHHHHhhCCCC
Confidence 8999999999999999999998
No 457
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=30.40 E-value=6.9e+02 Score=26.57 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=54.7
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC----CCcccHHHHHHHHHHcCChHHHHHHHHH
Q psy767 337 MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSS----LVNGDYLDIIHALAVSGHGEYIDEIISK 403 (902)
Q Consensus 337 m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~ 403 (902)
....|-.++..+...+|..++..+++.+-.++++..... .+...|..+|......|+..-...++++
T Consensus 193 ~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 193 VSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 455668888999999999999999999999999984332 2333499999999999999888887775
No 458
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.35 E-value=1.8e+02 Score=25.82 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=16.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKT 154 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~ 154 (902)
|+.+-+|...++|+++.+.|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 555666777777777777777766
No 459
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=30.34 E-value=23 Score=37.58 Aligned_cols=30 Identities=40% Similarity=0.569 Sum_probs=26.8
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+|++.||-+|.+.+++++||||.++....+
T Consensus 251 ~~l~~~p~~Rp~~~~il~~~~~~~~~~~~~ 280 (292)
T cd06644 251 TALDKHPETRPSAAQLLEHPFVSSVTSNRP 280 (292)
T ss_pred HHhcCCcccCcCHHHHhcCccccccccchh
Confidence 799999999999999999999988776554
No 460
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=30.10 E-value=7e+02 Score=26.57 Aligned_cols=148 Identities=16% Similarity=0.020 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-------HH-------------------CCCCCC
Q psy767 140 IEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMM-------SQ-------------------AGLEPS 193 (902)
Q Consensus 140 ~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M-------~~-------------------~g~~pd 193 (902)
-.+|+++|-.+.+..-+ .++-+-+|.++....+..+|...|... .. .++.-|
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 35789999888764322 256667888888888888887766532 11 123446
Q ss_pred HHHHHHHHHHHHHc-CChhHHHHHHHhcccCCCcc------------ch----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy767 194 AQTYTKLMCGYAKH-GDMDSIKTKIPSLKPQSELF------------LC----FSFQLTNLLILVSSDMASAEGILTMMS 256 (902)
Q Consensus 194 ~~ty~~ll~a~~~~-g~~~~a~~l~~~~~~~~~~~------------~~----~~~~~~~~~~~~~g~~~~A~~l~~~m~ 256 (902)
..-|-..++..... -.++++.++....+..-... -. .........+..+|.+.+|.++.+...
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 66666666554433 34566666666654321111 00 112222333344777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 257 QAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 257 ~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
... +.+...|-.|+..+...|+--.|.+-++.+
T Consensus 307 tld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 307 TLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred hcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 654 566777777777777777766666666654
No 461
>KOG0670|consensus
Probab=29.95 E-value=21 Score=40.32 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=21.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCcc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFN 873 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~ 873 (902)
.|+-.||..|.+|.|.|+||||-
T Consensus 728 kml~LdP~KRit~nqAL~HpFi~ 750 (752)
T KOG0670|consen 728 KMLILDPEKRITVNQALKHPFIT 750 (752)
T ss_pred HHhccChhhcCCHHHHhcCCccc
Confidence 78899999999999999999985
No 462
>KOG0667|consensus
Probab=29.86 E-value=22 Score=41.22 Aligned_cols=30 Identities=40% Similarity=0.716 Sum_probs=26.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+||+.||.+|++-.|-++||||........
T Consensus 484 ~~L~~dP~~R~tp~qal~Hpfl~~~~~~~~ 513 (586)
T KOG0667|consen 484 RCLEWDPAERITPAQALNHPFLTGTSLERR 513 (586)
T ss_pred HHhccCchhcCCHHHHhcCccccccccccc
Confidence 899999999999999999999986555543
No 463
>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,
Probab=29.78 E-value=24 Score=37.46 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.9
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~ 875 (902)
+|++.||.+|. +.+++++||||...
T Consensus 238 ~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~ 267 (285)
T cd05605 238 QLLTKDPGFRLGCRGEGAEEVKAHPFFRTA 267 (285)
T ss_pred HHccCCHHHhcCCCCCCHHHHhcCcCccCC
Confidence 89999999999 78899999999764
No 464
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=29.43 E-value=24 Score=38.39 Aligned_cols=26 Identities=35% Similarity=0.686 Sum_probs=23.0
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 876 (902)
+||..||.+|. +.+++++||||.+..
T Consensus 228 ~~L~~dP~~R~~~~~~~~~~il~h~~~~~~~ 258 (328)
T cd05593 228 GLLIKDPNKRLGGGPDDAKEIMRHSFFTGVN 258 (328)
T ss_pred HHcCCCHHHcCCCCCCCHHHHhcCCCcCCCC
Confidence 68999999998 899999999998753
No 465
>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in
Probab=29.42 E-value=26 Score=38.06 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=23.6
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 876 (902)
+||+.||.+|. +.+++++||||.+..
T Consensus 228 ~~L~~dP~~R~~~~~~~~~~~l~h~~~~~~~ 258 (323)
T cd05595 228 GLLKKDPKQRLGGGPSDAKEVMEHRFFLSIN 258 (323)
T ss_pred HHccCCHHHhCCCCCCCHHHHHcCCCcCCCC
Confidence 78999999998 899999999998864
No 466
>PRK11619 lytic murein transglycosylase; Provisional
Probab=29.38 E-value=1.1e+03 Score=28.54 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCccc--HHHHHHHHHHcCChHHHHHHHHHc
Q psy767 345 SAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD--YLDIIHALAVSGHGEYIDEIISKI 404 (902)
Q Consensus 345 ~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m 404 (902)
+......-+..-.+.++++.+...+..|........ .-.+..++...|+.++|...|+..
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444445555566677766666666543222211 234556655567777776666664
No 467
>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate
Probab=29.19 E-value=23 Score=38.29 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=23.2
Q ss_pred CCCCCCcchhhh-----HHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWS-----CDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 876 (902)
+||+.||.+|.+ ++++++||||.++.
T Consensus 231 ~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~~ 261 (318)
T cd05582 231 ALFKRNPANRLGAGPDGVEEIKRHPFFSTID 261 (318)
T ss_pred HHhhcCHhHcCCCCCCCHHHHhCCCCcCCCC
Confidence 789999999998 88899999998763
No 468
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=29.16 E-value=1.1e+02 Score=22.23 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCC
Q psy767 130 LISKYCQDGNIEGATKILEFMRDKT 154 (902)
Q Consensus 130 li~~~~~~g~~~~A~~l~~~m~~~~ 154 (902)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3889999999999999999988655
No 469
>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates
Probab=29.13 E-value=20 Score=37.89 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+|++.||.+|-+.+++++||||..+.....
T Consensus 249 ~~l~~~p~~Rpt~~~i~~~~~~~~~~~~~~ 278 (288)
T cd06616 249 LCLIKDESKRPKYKELLEHPFIKDYEERNV 278 (288)
T ss_pred HHccCChhhCcCHHHHhcChhhhchhhcch
Confidence 899999999999999999999987665443
No 470
>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely
Probab=29.05 E-value=24 Score=37.59 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=21.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||.+|.+++++++||||
T Consensus 281 ~~l~~~P~~Rp~~~~il~~~~~ 302 (302)
T cd07864 281 HMLTLDPSKRCTAEEALNSPWL 302 (302)
T ss_pred HHccCChhhCCCHHHHhcCCCC
Confidence 8999999999999999999997
No 471
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.79 E-value=2.4e+02 Score=25.05 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 589999999999999999999998877
No 472
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.59 E-value=1.7e+02 Score=21.59 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=18.4
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q psy767 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIY 167 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~ 167 (902)
.+.|-++++..+++.|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445555556666666666665555555554443
No 473
>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte
Probab=28.54 E-value=23 Score=37.10 Aligned_cols=22 Identities=32% Similarity=0.745 Sum_probs=21.0
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||.+|.+++++++||||
T Consensus 251 ~~l~~~p~~Rps~~~il~~~~~ 272 (272)
T cd06629 251 ACFTINPDNRPTARELLQHPFI 272 (272)
T ss_pred HHhcCChhhCCCHHHHhhCCCC
Confidence 7899999999999999999997
No 474
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=28.46 E-value=97 Score=32.90 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=35.7
Q ss_pred CCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 155 FPISEGV-FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201 (902)
Q Consensus 155 ~~p~~~~-yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll 201 (902)
+.||..+ ||..|..-.+.||+++|+++++|..+.|+.--..||...+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3455555 6799999999999999999999999998765555655443
No 475
>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili
Probab=28.30 E-value=28 Score=36.67 Aligned_cols=22 Identities=45% Similarity=0.750 Sum_probs=21.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||-+|.+.++++.||||
T Consensus 262 ~cl~~~p~~Rpt~~ei~~~~~~ 283 (283)
T cd07830 262 DMLRWDPKKRPTASQALQHPYF 283 (283)
T ss_pred HhcccCcccCCCHHHHhhCCCC
Confidence 9999999999999999999998
No 476
>PRK11906 transcriptional regulator; Provisional
Probab=28.18 E-value=9.4e+02 Score=27.43 Aligned_cols=148 Identities=11% Similarity=0.051 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHhhh-CCCCCC-HHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 139 NIEGATKILEFMRD-KTFPIS-EGVFNALIYGHSQ---------ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 139 ~~~~A~~l~~~m~~-~~~~p~-~~~yn~Li~~~~~---------~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~ 207 (902)
..+.|+.+|.+... ..+.|+ ...|..+--++.. .....+|.++-+...+.+ .-|......+-.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 45678889998872 223333 3444444333322 234567777777777776 34778888888888888
Q ss_pred CChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy767 208 GDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAG-LEPSAQTYTKLMCGYAKHGDMDSVRRL 286 (902)
Q Consensus 208 g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~ty~~LI~a~~~~g~~~~A~~l 286 (902)
++.+.|...|++...-++. ....+.....+...+|+.++|.+.+++..+.. ...-.......|..|+.++ +++|.++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 8999999999998775433 23344445555667999999999999865532 1222333344455666544 6777777
Q ss_pred HHH
Q psy767 287 LAQ 289 (902)
Q Consensus 287 f~~ 289 (902)
|.+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 654
No 477
>KOG0403|consensus
Probab=28.05 E-value=9.2e+02 Score=27.27 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=95.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 128 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~ 207 (902)
|-++.-|...|+..+|.+..+++...- .-+...=.+|+.+....-.-...+.++.+-... +...-+.+.+++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vsf-fhhe~vkralv~ame~~~ae~l~l~llke~~e~----glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVSF-FHHEGVKRALVDAMEDALAEGLTLKLLKEGREE----GLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHhhhhcccceeccchhhhhh----cchhhhccccCchhh
Confidence 445666666777666666666554322 122233333433333322222233334443333 233334445555554
Q ss_pred CC--------hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q psy767 208 GD--------MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 279 (902)
Q Consensus 208 g~--------~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~ 279 (902)
+. +..|...|+.+..+.....+..-+.+-..-...|+.+. .+.|+ .+...+|+-|...|+
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fk-----------k~~~~IIqEYFlsgD 360 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFK-----------KDLTPIIQEYFLSGD 360 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHH-----------HhhHHHHHHHHhcCC
Confidence 32 33567777777665555444333333333333455333 22222 234679999999999
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHH
Q psy767 280 MDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAI 321 (902)
Q Consensus 280 ~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l 321 (902)
..+..+.++++......|-+..++.-++.-+....-+.+..+
T Consensus 361 t~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvl 402 (645)
T KOG0403|consen 361 TPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVL 402 (645)
T ss_pred hHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHH
Confidence 999999999887776677666666666665555555544443
No 478
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=27.98 E-value=24 Score=36.70 Aligned_cols=22 Identities=45% Similarity=0.715 Sum_probs=21.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||.+|-+++++++||||
T Consensus 244 ~~l~~~p~~Rp~~~~~l~~~~~ 265 (265)
T cd06631 244 SCLTRDQHERPSALQLLRHDFL 265 (265)
T ss_pred HHhcCCcccCCCHHHHhcCCCC
Confidence 8999999999999999999998
No 479
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=27.87 E-value=27 Score=37.10 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=23.0
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 876 (902)
+|+..||.+|. +.+++++||||....
T Consensus 231 ~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~ 261 (290)
T cd05580 231 NLLQVDLTKRLGNLKNGVNDIKNHPWFAGID 261 (290)
T ss_pred HHccCCHHHccCcccCCHHHHHcCcccccCC
Confidence 78888999999 899999999997655
No 480
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.81 E-value=1.2e+02 Score=26.87 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 381 YLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
|..++.-|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77788888888888888888877765
No 481
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=27.68 E-value=25 Score=38.31 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=22.4
Q ss_pred CCCCCCcchhhh-----HHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRWS-----CDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~~-----~~~~~~~~~~~~~ 875 (902)
+||+.||-+|.+ .+++++||||.+.
T Consensus 248 ~~L~~dP~~R~~~~~~~~~~ll~hp~f~~~ 277 (329)
T PTZ00263 248 GLLQTDHTKRLGTLKGGVADVKNHPYFHGA 277 (329)
T ss_pred HHhhcCHHHcCCCCCCCHHHHhcCCccCCC
Confidence 789999999986 6999999999874
No 482
>KOG2168|consensus
Probab=27.59 E-value=1.2e+03 Score=28.62 Aligned_cols=174 Identities=15% Similarity=0.108 Sum_probs=77.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCH----HHHHHHHHHhccCCCCCCHHHHHHHHHHc
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKL-MCGYAKHGDM----DSVRRLLAQSGSSLVNGDYLDIIHALAVS 309 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~L-I~a~~~~g~~----~~A~~lf~~m~~~~~~p~~~tl~~~l~~~ 309 (902)
++..+.++|+++.|.++.++.... .+-...|-.. ..+|.++-.. +.-.++..+.......|--..+-.++..|
T Consensus 331 ~vyy~lR~G~lk~A~~~l~e~~~~--~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l~~~~~DpyK~AvY~iig~c 408 (835)
T KOG2168|consen 331 LVYYLLRCGDLKAASQFLNENKDF--FEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSELGRNSTDPYKLAVYKIIGGC 408 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHHhccccCChHHHHHHHHHhcC
Confidence 344556799999999998887753 2223333333 6677666332 22344455544333333334444445444
Q ss_pred CCc-ccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHH
Q psy767 310 GHG-EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHAL 388 (902)
Q Consensus 310 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~ 388 (902)
.-. +..+.+..+.+++ |.+-.......-..+..+++-...-+.+.--.+-....|.. .+..| .....++
T Consensus 409 d~~~~~~ev~~tiED~L-----W~kL~~ir~~~~~sds~~~~~~~~~~~~~il~~YG~sYFt~---ng~~p--~~Yf~~L 478 (835)
T KOG2168|consen 409 DLRRDLPEVADTIEDFL-----WFKLSLIRVDDQGSDSPTDELFLLEDQKDILEAYGESYFTN---NGSQP--LLYFQVL 478 (835)
T ss_pred ccccccHHHHhHHHHHH-----HHHHHheeecCCCCcchHHhhhhHHHHHHHHHHhHHHhhcc---CCCCh--HHHHHHH
Confidence 432 2233333322221 11100001111011122332222222211111111233322 12222 2345566
Q ss_pred HHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHH
Q psy767 389 AVSGHGEYIDEIISKIQPGVGYSADAANHIYHLIN 423 (902)
Q Consensus 389 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~ 423 (902)
.-+|.++.|+.++..+.+ ..-|.+.+..++..
T Consensus 479 lLsgqfe~AI~fL~~~~~---~~~dAVH~AI~l~~ 510 (835)
T KOG2168|consen 479 LLSGQFERAIEFLHREEP---NRIDAVHVAIALAE 510 (835)
T ss_pred HHHHhHHHHHHHHHhhcC---CcchhHHHHHHHHH
Confidence 677889999999988866 33455544444443
No 483
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=27.44 E-value=27 Score=37.97 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.2
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (902)
++++ +|.+|.+++++++||||..+
T Consensus 246 ~ll~-~p~~R~t~~~l~~h~~~~~~ 269 (330)
T cd05601 246 SLLC-GQKERLGYEGLCCHPFFSKI 269 (330)
T ss_pred HHcc-ChhhCCCHHHHhCCCCcCCC
Confidence 4676 99999999999999999864
No 484
>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.
Probab=27.37 E-value=26 Score=36.23 Aligned_cols=22 Identities=41% Similarity=0.689 Sum_probs=21.2
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.||-+|.+++++++||||
T Consensus 236 ~~l~~~p~~Rp~~~~~l~~~~~ 257 (257)
T cd08223 236 TMLSKRPEKRPSVKSILRQPYI 257 (257)
T ss_pred HHhccCcccCCCHHHHhcCCCC
Confidence 8899999999999999999997
No 485
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=27.31 E-value=87 Score=20.07 Aligned_cols=23 Identities=9% Similarity=-0.044 Sum_probs=12.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC
Q psy767 166 IYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
..++.+.|++++|.+.|+++...
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 34445556666666666655543
No 486
>PHA02875 ankyrin repeat protein; Provisional
Probab=27.25 E-value=7.3e+02 Score=27.74 Aligned_cols=188 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHcCCCCCc-cc
Q psy767 304 HALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQT--YTKLMCGYAKHGDMDSIRRLLAQNGSSLVN-GD 380 (902)
Q Consensus 304 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t--~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~-~~ 380 (902)
.++......+..+.+.. +.+.|..|+... ..+.+...+..|+.+-+.-+++.-...... +.
T Consensus 4 ~~L~~A~~~g~~~iv~~----------------Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~ 67 (413)
T PHA02875 4 VALCDAILFGELDIARR----------------LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPD 67 (413)
T ss_pred hHHHHHHHhCCHHHHHH----------------HHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCC
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHccc-CCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhh
Q psy767 381 YLDIIHALAVSGHGEYIDEIISKIQP-GVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMV 459 (902)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~l~~~m~~-~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~ 459 (902)
..+-+...+..|+.+.+..+++.-.. ......+..|.+...+..|+.+-+..+++. |.++...+.
T Consensus 68 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-----gad~~~~~~--------- 133 (413)
T PHA02875 68 IESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR-----GADPDIPNT--------- 133 (413)
T ss_pred cccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC-----CCCCCCCCC---------
Q ss_pred hcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q psy767 460 KTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLH 539 (902)
Q Consensus 460 ~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~ 539 (902)
.-.+.+...+..|+.+-+..+++.-......+ ....+.+...+..|. .++++.+.+.|..
T Consensus 134 -----------~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d----~~g~TpL~~A~~~g~-----~eiv~~Ll~~ga~ 193 (413)
T PHA02875 134 -----------DKFSPLHLAVMMGDIKGIELLIDHKACLDIED----CCGCTPLIIAMAKGD-----IAICKMLLDSGAN 193 (413)
T ss_pred -----------CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCC----CCCCCHHHHHHHcCC-----HHHHHHHHhCCCC
Q ss_pred CC
Q psy767 540 PR 541 (902)
Q Consensus 540 Pd 541 (902)
|+
T Consensus 194 ~n 195 (413)
T PHA02875 194 ID 195 (413)
T ss_pred CC
No 487
>KOG4077|consensus
Probab=27.21 E-value=3.5e+02 Score=24.83 Aligned_cols=46 Identities=26% Similarity=0.239 Sum_probs=36.6
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 143 ATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 143 A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
..+.++.+...++.|+...-.+-+++|-+-+++..|.++|+-.+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4555666677788888888888888888888888888888887654
No 488
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.00 E-value=1.8e+02 Score=24.12 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=0.0
Q ss_pred ccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHH
Q psy767 448 LPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVL 527 (902)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~ 527 (902)
|..+.-+.+.-+....|-.||.|. +++-+.+|.-.++|+++++-|.+.+... .+.|-
T Consensus 13 p~l~~eleg~~l~~~~~~~gy~Pt---V~D~L~rCdT~EEAlEii~yleKrGEi~--------------------~E~A~ 69 (98)
T COG4003 13 PALAKELEGIRLEPKIDFSGYNPT---VIDFLRRCDTEEEALEIINYLEKRGEIT--------------------PEMAK 69 (98)
T ss_pred HHHHHHhhcccccccCCcCCCCch---HHHHHHHhCcHHHHHHHHHHHHHhCCCC--------------------HHHHH
Q ss_pred HHHHHHHHCCC
Q psy767 528 AVCHRLTDENL 538 (902)
Q Consensus 528 ~l~~~m~~~g~ 538 (902)
.+=..+.+.|+
T Consensus 70 ~L~~~~~~kgv 80 (98)
T COG4003 70 ALRVTLVHKGV 80 (98)
T ss_pred HHHhhHHHHHH
No 489
>KOG2066|consensus
Probab=26.94 E-value=1.2e+03 Score=28.35 Aligned_cols=263 Identities=9% Similarity=0.020 Sum_probs=0.0
Q ss_pred hcHHHHHHHhccccchhHH--HHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCch
Q psy767 23 EATAEVTTVLGALGAFLVL--LVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTF 100 (902)
Q Consensus 23 ~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~ 100 (902)
..|++|..+..+....... ..-+....+..+.-.|++++|-.+.-.|.. -+..-|.--+..++..++..
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---------n~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---------NNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc---------chHHHHHHHHHHhccccccc
Q ss_pred HHH------------HHHHHHHHCCCCCCHHHHHHHHH-----------------------------hHHHHHHHHHcCC
Q psy767 101 SPT------------DFLAKLESQGIEPNRVTYQQLIS-----------------------------NSKLISKYCQDGN 139 (902)
Q Consensus 101 ~A~------------~l~~~M~~~g~~pd~~t~~~ll~-----------------------------~~~li~~~~~~g~ 139 (902)
... .+++...-.-+.++...|..+++ ...|+..|...++
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~ 520 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNK 520 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccC
Q ss_pred HHHHHHHHHHhhhCCC------------------------------------------------CCCHHHHHHHHHHHHh
Q psy767 140 IEGATKILEFMRDKTF------------------------------------------------PISEGVFNALIYGHSQ 171 (902)
Q Consensus 140 ~~~A~~l~~~m~~~~~------------------------------------------------~p~~~~yn~Li~~~~~ 171 (902)
+..|+.++-..++..+ .-+...-+.-+..+..
T Consensus 521 Y~~Al~~ylklk~~~vf~lI~k~nL~d~i~~~Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~~~P~~l~~YL~kl~~ 600 (846)
T KOG2066|consen 521 YEKALPIYLKLQDKDVFDLIKKHNLFDQIKDQIVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLEDNPKLLYCYLHKLFK 600 (846)
T ss_pred hHHHHHHHHhccChHHHHHHHHHhhHHHHHHHHHHHHccchhhHHHHHhhccccCCHHHHHHHHhcChHHHHHHHHHHhh
Q ss_pred CC------CHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHH
Q psy767 172 AN------DMASAEGILTMMSQAGLEP-----SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL 240 (902)
Q Consensus 172 ~g------~~~~A~~l~~~M~~~g~~p-----d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (902)
.. --+..+.+|.+.....+-| ...-....+..|.+.|-+++..-++..|.. +..++..+..
T Consensus 601 rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn--------~k~AL~lII~ 672 (846)
T KOG2066|consen 601 RDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGN--------AKEALKLIIN 672 (846)
T ss_pred cCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcc--------hHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHhccCCCCCCHHHHHHHHHH
Q psy767 241 VSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR----------RLLAQSGSSLVNGDYLDIIHALAV 308 (902)
Q Consensus 241 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~----------~lf~~m~~~~~~p~~~tl~~~l~~ 308 (902)
..++++.|.++.++ .-|...|..||.-....-.+-.++ .+...|......|+...-+.-+..
T Consensus 673 el~die~AIefvKe------q~D~eLWe~LI~~~ldkPe~~~~ll~i~~~~dpl~ii~kip~g~~IPnLrdsl~Kil~ 744 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKE------QDDSELWEDLINYSLDKPEFIKALLNIGEHEDPLLIIRKIPDGLEIPNLRDSLVKILQ 744 (846)
T ss_pred HhhCHHHHHHHHHh------cCCHHHHHHHHHHhhcCcHHHHHHHHhhhcccHHHHHhcCCCCCCCccHHHHHHHHHH
No 490
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.94 E-value=4e+02 Score=22.71 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=23.1
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q psy767 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAE 179 (902)
Q Consensus 136 ~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~ 179 (902)
..|+.+.|.+++..+. +|- ..|...++++-..|.-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhhh
Confidence 4466666666666666 442 45666666666666555443
No 491
>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti
Probab=26.88 E-value=25 Score=36.37 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=21.1
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.+|.+|.+.+++++||||
T Consensus 235 ~~l~~~p~~Rp~~~~vl~~~~~ 256 (256)
T cd08218 235 QLFKRNPRDRPSVNSILEKNFI 256 (256)
T ss_pred HHhhCChhhCcCHHHHhhCcCC
Confidence 7899999999999999999998
No 492
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.78 E-value=7.8e+02 Score=26.05 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=40.0
Q ss_pred HHHHHHhcCHHHHHHHHHHhhh--hhchhhccchhhhh-hhccCCchhHHHHHHHHHhhhh
Q psy767 680 VVHMLRQHNLKEAALLAKSFRA--HYAKVVVRPVLAVS-YLRTQDLPSLVTVVRAVCENWE 737 (902)
Q Consensus 680 l~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 737 (902)
+++-.-.++.+++..++..-.+ .++...++..++++ .-.+.+..+|.+.+.+|-+++-
T Consensus 253 lLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~ 313 (421)
T COG5159 253 LLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELH 313 (421)
T ss_pred HHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhc
Confidence 3333566678888888765444 37777777777776 3345568888999998876665
No 493
>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down
Probab=26.77 E-value=24 Score=37.91 Aligned_cols=25 Identities=32% Similarity=0.733 Sum_probs=23.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (902)
+|++.||.+|.+.+++++||||.+-
T Consensus 269 ~~l~~~P~~Rpt~~~ll~~~~~~~~ 293 (308)
T cd06615 269 KCLKKNPKERADLKELTKHPFIKRA 293 (308)
T ss_pred HHccCChhhCcCHHHHhcChhhhhc
Confidence 8999999999999999999999763
No 494
>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They
Probab=26.72 E-value=28 Score=35.79 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=21.4
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.+|.+|.+.+++++||||
T Consensus 237 ~~l~~~p~~Rp~~~~ll~~~~~ 258 (258)
T cd08215 237 SLLQKDPEERPSIAQILQSPFI 258 (258)
T ss_pred HHcCCChhhCcCHHHHhcCCCC
Confidence 8999999999999999999998
No 495
>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of
Probab=26.47 E-value=22 Score=36.89 Aligned_cols=26 Identities=42% Similarity=0.764 Sum_probs=23.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
+|++.+|.+|.+.+++++||||.++.
T Consensus 238 ~~l~~~p~~R~~~~~ll~~~~~~~~~ 263 (264)
T cd06623 238 ACLQKDPKKRPSAAELLQHPFIKKAD 263 (264)
T ss_pred HHccCChhhCCCHHHHHhCHHHHhcc
Confidence 59999999999999999999997654
No 496
>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in
Probab=26.32 E-value=30 Score=37.52 Aligned_cols=25 Identities=24% Similarity=0.611 Sum_probs=22.6
Q ss_pred CCCCCCcchhh-----hHHHhhcCCCccCC
Q psy767 851 RCLDKDPLRRW-----SCDQLLRHPYFNGY 875 (902)
Q Consensus 851 ~~~~~~~~~~~-----~~~~~~~~~~~~~~ 875 (902)
+|+..||.+|. +++++++||||...
T Consensus 233 ~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~ 262 (323)
T cd05584 233 KLLKRNPSSRLGAGPGDAAEVQSHPFFRHV 262 (323)
T ss_pred HHcccCHhHcCCCCCCCHHHHhcCCCcCCC
Confidence 78999999999 89999999999764
No 497
>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the
Probab=25.93 E-value=29 Score=36.75 Aligned_cols=22 Identities=36% Similarity=0.838 Sum_probs=21.2
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+||+.||-+|.+.+++++||||
T Consensus 270 ~~L~~~p~~Rps~~e~l~~~~f 291 (291)
T cd07844 270 KFLQYEPKKRISAAEAMKHPYF 291 (291)
T ss_pred HHhccCcccccCHHHHhcCCCC
Confidence 7899999999999999999998
No 498
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=25.76 E-value=1.9e+02 Score=25.37 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=47.1
Q ss_pred HHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHH
Q psy767 43 VLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY 121 (902)
Q Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 121 (902)
..+-.+-++.+...|++++|..+.+.... ||...|-++-. .+.|....+..-+.+|..+| .|....|
T Consensus 39 E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~---------pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 39 EAVQLIRLSSLMNRGDYQSALQLGNKLCY---------PDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCCCC---------chHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 33444556777888999999888888877 89999887755 45676677777777777766 4444444
No 499
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=25.68 E-value=5.5e+02 Score=27.16 Aligned_cols=87 Identities=7% Similarity=-0.007 Sum_probs=48.6
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 88 ALLRVYLDNEHTFSPTDFLAKLESQ--GIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 88 ~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
.=|.+++..+++.+++...-+--+. .++|.. ...- |-.|.+.|....+.++-..-...--.-+...|.++
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLC------ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~v 159 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELC------ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTV 159 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHH------HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHH
Confidence 4567777778887777655443321 233333 3333 55677777777777766544322111122346666
Q ss_pred HHHHHh-----CCCHHHHHHHH
Q psy767 166 IYGHSQ-----ANDMASAEGIL 182 (902)
Q Consensus 166 i~~~~~-----~g~~~~A~~l~ 182 (902)
+..|.. .|.+++|+++.
T Consensus 160 aELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 160 AELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhccccHHHHHHHH
Confidence 655544 47777776665
No 500
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=25.67 E-value=30 Score=36.10 Aligned_cols=22 Identities=41% Similarity=0.924 Sum_probs=21.3
Q ss_pred CCCCCCcchhhhHHHhhcCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYF 872 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+|++.+|-+|-+.+++++||||
T Consensus 247 ~~l~~~p~~Rpt~~~ll~~~~~ 268 (268)
T cd06624 247 RCFEPDPDKRASAHDLLQDPFL 268 (268)
T ss_pred HHcCCCchhCCCHHHHHhCCCC
Confidence 8999999999999999999997
Done!