RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy767
(902 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 5e-13
Identities = 77/443 (17%), Positives = 129/443 (29%), Gaps = 129/443 (29%)
Query: 39 LVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHY-NALLRVYLDNE 97
L +L L ++ W S N+ EL L Y N LL V L N
Sbjct: 199 LEMLQKLLYQIDPNWTSRSD-HSSNIK--LRIHSIQAELRRLLKSKPYENCLL-V-LLN- 252
Query: 98 HTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKY---CQDGNIEGATKILEFMRDKT 154
+ N+K + + C KIL R K
Sbjct: 253 ---------------------------VQNAKAWNAFNLSC---------KILLTTRFK- 275
Query: 155 FPISEGVFNALI---YGHSQANDMAS------AEGIL---TMMSQAGLEPSAQTYTKL-- 200
V + L H + + + +L L T
Sbjct: 276 -----QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 201 -MCG-----------YAKHGDMDSIKTKIPS----LKP--QSELFLCFS-FQL-----TN 236
+ KH + D + T I S L+P ++F S F T
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 237 LLILVSSDMAS--AEGILTMMSQAGL---EPSAQTYT----------KLMCGYAKHG--- 278
LL L+ D+ ++ + + L +P T + KL YA H
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 279 DMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEG- 334
D ++ + D Y I H L H E + + F++ F +LE
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--FLD--FRFLEQK 506
Query: 335 ------PMMSQAGLEPSAQ---TYTKLMCGYAKHGDM--DSIRRLLAQNGSSLVNGDYLD 383
+ + + Q Y +C + ++I L + +L+ Y D
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 384 IIHALAVSG-HGEYIDEIISKIQ 405
++ +A+ +E ++Q
Sbjct: 567 LLR-IALMAEDEAIFEEAHKQVQ 588
Score = 65.6 bits (159), Expect = 5e-11
Identities = 109/695 (15%), Positives = 213/695 (30%), Gaps = 216/695 (31%)
Query: 7 NVSDTATPVGITTEVSEATAEVTTVLGALGAFLVLL------VLLFV---------YLNS 51
+V D + E+ V G L F LL V FV +L S
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 52 KWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLES 111
+E P + + I + R+Y DN+ F+ +++L+
Sbjct: 97 PIKTE---------QRQP------SMMTRMYIEQRD---RLYNDNQ-VFAK-YNVSRLQP 136
Query: 112 QGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK---ILEFMRDKTFPISEGVFNALIY- 167
R +L ++ DG + G+ K L+ + + I+
Sbjct: 137 --YLKLRQALLELRPAKNVLI----DG-VLGSGKTWVALDVCLSYKV---QCKMDFKIFW 186
Query: 168 ---GHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD-MDSIKTKIPSLKPQ 223
+ S E +L M+ + ++ + D +IK +I S++ +
Sbjct: 187 LNLKNCN-----SPETVLEMLQ--------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 224 SELFLCFSFQLTN-LLILVSSDMASAEG-----------ILTMMSQAGLEPSAQTYTKLM 271
L S N LL+L ++ +A+ + T Q SA T T +
Sbjct: 234 LRRLLK-SKPYENCLLVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 272 CGYAKHG-DMDSVRRLLAQSGSSLVNGDYLDI-----------IHALAVSGHGEYI---- 315
+ D V+ LL + YLD + +S E I
Sbjct: 291 LDHHSMTLTPDEVKSLLLK---------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 316 -----------DEVSAIVCFVNICFHWLEGPMMSQ-----AGLEPSAQTYTKLMC---GY 356
D+++ I + + LE + + PSA T L+
Sbjct: 342 ATWDNWKHVNCDKLTTI---IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 357 AKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN 416
D+ + L + SLV + ++ Y++ K++ + A
Sbjct: 399 VIKSDVMVVVNKLHK--YSLVEKQPKESTISI----PSIYLEL---KVKL----ENEYAL 445
Query: 417 HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHI 476
H +++ Y I ++ + + P Y +HI
Sbjct: 446 HR-SIVDH------YNI----PKTFDSDDLIPP--------------YLDQYF---YSHI 477
Query: 477 -YHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535
+HL N + TL R ++ FL + + + + ++ + L
Sbjct: 478 GHHLKNIEHPERM-----TLFRMVFLD---F---RFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 536 ENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFI-QAEDAACL 594
+ K ++ D +E VN + F+ + E+
Sbjct: 527 LKFY----------KPYICDND-----PKYERLVNA----------ILDFLPKIEENLIC 561
Query: 595 QRITDL-STSIHGEVNSLYDLMLSFLDAEVLRILQ 628
+ TDL ++ E ++++ +A + +Q
Sbjct: 562 SKYTDLLRIALMAEDEAIFE------EAH--KQVQ 588
Score = 60.6 bits (146), Expect = 2e-09
Identities = 87/581 (14%), Positives = 170/581 (29%), Gaps = 169/581 (29%)
Query: 381 YLDIIH----ALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNT 436
Y DI+ A + + + ++ I S + +HI +++K + R+ T
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSI-----LSKEEIDHI--IMSKDAVSGTLRLFWT 70
Query: 437 LARSANINGEQLPVG-------GFLV-RHMVKTNQPGVGYSADAANHIYH---LINKGQI 485
L S Q V FL+ + QP S +I L N Q+
Sbjct: 71 L-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP----SMMTRMYIEQRDRLYNDNQV 125
Query: 486 DAAY---RI--VNTLARSANINGEQLPVGGFLVRH-MV---KTNQPIDKVLA--VCHRLT 534
A Y R+ L ++ +L ++ ++ KT +A VC
Sbjct: 126 FAKYNVSRLQPYLKLRQAL----LELRPAKNVLIDGVLGSGKT------WVALDVCL--- 172
Query: 535 DENLHPRAFNLAVL-IKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAAC 593
+ + + + + E + + L I +
Sbjct: 173 SYKVQ-CKMDFKIFWLNL--------KNCNSPETVLEML-------QKLLYQIDPNWTSR 216
Query: 594 LQRITDLSTSIHGEVNSLYDLMLSFLDAEVLRIL------QVAEAEFGVGSNT-ETLRDY 646
+++ IH L L+ S L +L + A F + T R
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRF- 274
Query: 647 VLPVLSPPNQVSGEVFSQLRSVGVTIGSITSAYVVHMLRQHNLKEAALLAKSFRAHYAKV 706
+ +S + + ++ L +K LL K
Sbjct: 275 ----KQVTDFLSAATTTHISLDHHSMT----------LTPDEVKS--LLLK--------- 309
Query: 707 VVRPVLAVSYLRTQDLPS--------LVTVVRAVC-------ENWEKGEEGEKEEEGEEK 751
L R QDLP ++++ +NW K ++
Sbjct: 310 ----YLDC---RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-------KHVNCDKL 355
Query: 752 TAGQLIDMDRIFAGNVLLDIYKATRQDPNVVSHLEQLLNAFVEHA-IPISAFS---SDYI 807
T +I+ L++ +P + L+ F A IP S D I
Sbjct: 356 T--TIIESS--------LNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 808 QNGLGSALTSDISKALGALTSDDLMPQPLQY-VPSMFIPRGQPL--------RCLDKDPL 858
++ + + +L + P+ +PS+++ L +D +
Sbjct: 401 KSDVMVVVNKLHKYSL--VEKQ---PKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 859 RRWSCDQLLRHPYFNGYYFE-----VPDEMQYEEITQVSRL 894
+ L PY + Y++ + + E +T +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Score = 58.7 bits (141), Expect = 7e-09
Identities = 74/652 (11%), Positives = 179/652 (27%), Gaps = 186/652 (28%)
Query: 74 TGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISK 133
TGE Y +L V+ D F+ + + ++ + ++S ++
Sbjct: 11 TGEHQY-----QYKDILSVFED--------AFVDNFDCKDVQD---MPKSILSKEEIDHI 54
Query: 134 YCQDGNIEGATKILEFMRDKTFPISEGVFNALI---YG------HSQANDMASAEGILTM 184
+ G ++ + K + + ++ Y ++ S + +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYI 113
Query: 185 MSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLC--FSFQLTNLLILVS 242
+ L Q + K + ++ + L+P + + T + + V
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQP--YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 243 SDMASAEGILTMMS--------------QAGLEPSAQTYTKLMCGYAKHGDM-------- 280
+ M + LE + ++ + D
Sbjct: 172 LS----YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 281 ----DSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEV--SAIVCFVNI-C----- 328
+RRLL Y + L V + V + N+ C
Sbjct: 228 HSIQAELRRLLKSK-------PY---ENCLLV------LLNVQNAKAWNAFNLSCKILLT 271
Query: 329 ------FHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYL 382
+L + L+ + T T D ++ LL + YL
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTP-----------DEVKSLLLK---------YL 311
Query: 383 DI-----------IHALAVSGHGEYIDEIISKIQPGVGYSADAANHI----YHLINKGQI 427
D + +S E I + ++ + D I +++ +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 428 DAAYRIVNTLARSANI--------------NGEQLPVGGFLVRHMVKTNQPGVGYSADAA 473
+ ++ SA+I + + V +V+ S
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--- 428
Query: 474 NHIYHLINKGQIDAAY----RIVN--TLARSANINGEQLPVG-----GFLVRHMVKTNQP 522
+L K +++ Y IV+ + ++ + + P + H+
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH- 486
Query: 523 IDKVLAVCHRLTDENLHPRAF-NLAVL---IKAHVLKEDYTGAVETFEYCVNQFRATPWK 578
+++ L F + L I+ + +G++ + Q +
Sbjct: 487 PERM----------TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT---LQQLK----- 528
Query: 579 GELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFLDAEVLRILQVA 630
K +I D + + + + +L ++ +L++A
Sbjct: 529 --FYKPYICDNDPKYERLVNAILDFLPKIEENLI-------CSKYTDLLRIA 571
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 7e-12
Identities = 94/661 (14%), Positives = 194/661 (29%), Gaps = 216/661 (32%)
Query: 69 PFSVHTGELDVPLDIS---HYNAL-LRVYLDNEHTFS-----PTDFLAKLESQGIEPNRV 119
P ++ G L+ L + + A L+ + F+ PT+ A + EP
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQ---E---QFNKILPEPTEGFAADD----EP--- 54
Query: 120 TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN-----ALIYGHS---Q 171
+ ++L+ K+ L ++ P G F+ L + +
Sbjct: 55 -----TTPAELVGKF------------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 172 ANDMASAEGILTMMSQAGLEPS---AQTYTKLMCGYAKHGDMDSIKTKIPSL------KP 222
ND+ + L + L + + Y A+ K S +
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYIT-----ARIMAKRPFDKKSNSALFRAVGEG 152
Query: 223 QSELFLCFSFQ------LTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 276
++L F Q L L + ++ ++ L +T +
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET-LSELIRTTLDAEKVF-T 210
Query: 277 HGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVS--GHGEYIDEVSAIVCFVNICFHWLEG 334
G ++ + L ++ S+ + DYL I +S G V + +V
Sbjct: 211 QG-LN-ILEWL-ENPSNTPDKDYLLSI---PISCPLIG-----VIQLAHYVVTA------ 253
Query: 335 PMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHG 394
G P G++ S + G++ + ++ A+A++
Sbjct: 254 ---KLLGFTP---------------GELRSYLK-----GATGHSQ---GLVTAVAIA--- 284
Query: 395 EYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRI-------VNTLARSANI---- 443
D+ + + K I + I + +I
Sbjct: 285 ----------------ETDSWESFFVSVRKA-ITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 444 --NGEQLP-----VGG----FLVRHMVKTNQPGVGYSADAANHIY-HLIN-------KGQ 484
N E +P + + ++ KTN A + L+N G
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNS-----HLPAGKQVEISLVNGAKNLVVSGP 382
Query: 485 IDAAYRIVNTLAR-SANINGEQ--LPVGGFLVRHMVKTNQ--PIDKVLAVCHR--LTD-- 535
+ Y + TL + A +Q +P F R + +N+ P+ + H L
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIP---FSERKLKFSNRFLPVA---SPFHSHLLVPAS 436
Query: 536 ENLHPRAFNLAVLIKAHVLK---ED-YTGAVETFEYCVNQFRATPWKGELLKRFIQAEDA 591
+ ++ V A ++ D + G+ R G + +R + D
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSD---------LRVL--SGSISERIV---DC 482
Query: 592 ACLQRI-----TDLSTSIH------GEVNSLYDLMLSFLDAEVLRILQVAEAEFGVGSNT 640
+ T + H G + L L D +R++ + + +
Sbjct: 483 IIRLPVKWETTTQFKAT-HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLD--INPDD 539
Query: 641 E 641
+
Sbjct: 540 D 540
Score = 55.4 bits (133), Expect = 9e-08
Identities = 105/597 (17%), Positives = 177/597 (29%), Gaps = 182/597 (30%)
Query: 207 HGDMDSIKTKIPSLKPQSELFLCF----SFQLTNLLILVSSDMASAEGILTMMSQAGLEP 262
HG S++ + P + F+ F L + A+ + EP
Sbjct: 13 HG---SLEHVLLV--PTASFFIASQLQEQFNKI--LPEPTEGFAADD-----------EP 54
Query: 263 SAQT--YTKLMCGYAKH-------GDMDSVRRLLAQSGSSLVNGDYL---DIIHALAVSG 310
+ K + GY G D V L YL DI HALA
Sbjct: 55 TTPAELVGKFL-GYVSSLVEPSKVGQFDQVLNLCLTE----FENCYLEGNDI-HALAAKL 108
Query: 311 HGEYIDEVSA----IVCFVNICFHWLEGPM--MSQAGLEPSAQTYTKLMCGYAKHGDMDS 364
E + I ++ + P S + L + G A
Sbjct: 109 LQENDTTLVKTKELIKNYITARIM-AKRPFDKKSNSALFRAVGE------GNA------- 154
Query: 365 IRRLLAQNGSSLVNGDYLDIIHALAVSGHG---EYIDEIISKIQPGVGYSADAANHIYHL 421
+L+A G G G +Y +E+ + Y YH+
Sbjct: 155 --QLVAIFG------------------GQGNTDDYFEEL-RDL-----YQ------TYHV 182
Query: 422 INKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKT--NQPGVGYSADAANHI-YH 478
+ I + ++ L R+ ++ E++ G + ++ N P Y I
Sbjct: 183 LVGDLIKFSAETLSELIRTT-LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP--ISCP 239
Query: 479 LINKGQIDAAYRIVNTLARSANINGEQL--PVGGFLVRHMVKTNQPIDKVLAVCHRLTD- 535
LI Q+ A Y + A+ +L + G +Q + V AV TD
Sbjct: 240 LIGVIQL-AHYVVT---AKLLGFTPGELRSYLKGATGH-----SQGL--VTAVAIAETDS 288
Query: 536 -ENLHPRAFN-LAVL----IKAHVLKEDYTGAVETFEYCVNQFRATPW-----KG---EL 581
E+ + VL ++ + + + E + P E
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 582 LKRFIQAEDAACLQRITDLSTSIH---------GEVNSLYDLMLSFLDAEVLRILQVAEA 632
++ ++ ++ L + S+ G SLY L L+ A+ L +
Sbjct: 349 VQDYVNKTNS-HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 633 EFG----VGSNTETLRDYVLPVLSPPNQVSGEVF-SQLRSVGVTIGSITSAYVVHMLRQH 687
F SN LPV SP F S L + A ++ +
Sbjct: 408 PFSERKLKFSNR------FLPVASP--------FHSHL---------LVPA--SDLINKD 442
Query: 688 NLKEAALLAKSFRAHYAKVVVRPVLAV---SYLRTQD---LPSLVTVVRAVCENWEK 738
L + + SF A ++ PV S LR +V + + WE
Sbjct: 443 -LVKNNV---SFNAKDIQI---PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Score = 52.0 bits (124), Expect = 1e-06
Identities = 43/265 (16%), Positives = 75/265 (28%), Gaps = 108/265 (40%)
Query: 298 DYLDIIHALAVSGHG------EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQT-YT 350
+Y +I V G + I+E S F + L + T +T
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF--------RSE---KGLL---SATQFT 1732
Query: 351 K---LMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGH--GEYIDEIISKIQ 405
+ + A L G L+ D +GH GEY
Sbjct: 1733 QPALTLMEKA-------AFEDLKSKG--LIPADA-------TFAGHSLGEY--------- 1767
Query: 406 PGVGYSADA--ANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQ 463
+A A A+ + I++ +V R G ++ V ++
Sbjct: 1768 -----AALASLADVM-------SIESLVEVVF--YR------------GMTMQVAVPRDE 1801
Query: 464 PGVGYSADAANHIYHLINKGQI------DAAYRIVNTLARS-------ANIN--GEQLPV 508
G A IN G++ +A +V + + N N +Q
Sbjct: 1802 LGRSNYGMIA------INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 509 GGFLVRHMVKTNQPIDKVLAVCHRL 533
G + +D V V + +
Sbjct: 1856 AG--------DLRALDTVTNVLNFI 1872
Score = 46.2 bits (109), Expect = 6e-05
Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 64/208 (30%)
Query: 708 VRPVLAVSY--LRTQ-DLPS----LVTVVRAVCENWEKGEEGEKEEEGEEKTAGQLIDMD 760
RP L +S+ L +P+ + + ++ + E T +L+
Sbjct: 6 TRP-LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK- 63
Query: 761 RIFAGNVLLDIYKATRQDPNVVSHLEQLLNAFVEHAIPISAFSSDYIQNGLGSALTSDIS 820
F G Y ++ +P+ V +Q+LN + F + Y++ +DI
Sbjct: 64 --FLG------YVSSLVEPSKVGQFDQVLNLCLTE------FENCYLEG-------NDIH 102
Query: 821 KALGALTSDDLMPQPLQYVPSMFIPRGQPLRC------LDKDPLRRWSCDQLLRH----- 869
L ++ + + + ++ + K P + S L R
Sbjct: 103 ALAAKLLQEN---------DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 870 --PY--FNG-----YYFEVPDEMQ--YE 886
F G YF +E++ Y+
Sbjct: 154 AQLVAIFGGQGNTDDYF---EELRDLYQ 178
Score = 37.7 bits (87), Expect = 0.024
Identities = 39/274 (14%), Positives = 83/274 (30%), Gaps = 90/274 (32%)
Query: 93 YLDNEHTFSPTDFLAKLESQGIEPNRVTY-------QQLISN-SKLISKYCQDGNIEGAT 144
+ + + FS D + P +T +++ N S +I + DG ++
Sbjct: 1652 HFKDTYGFSILDIVIN------NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK-TE 1704
Query: 145 KIL----EFMRDKTFPISEGVFN-------ALIYGHSQANDMASAEGILTMMSQAGLEPS 193
KI E TF +G+ + AL + + GL P+
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPAL---------TLMEKAAFEDLKSKGLIPA 1755
Query: 194 AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF--LC-----FSFQ-LTNLL----ILV 241
G H SL E + L S + L ++ + +
Sbjct: 1756 D----ATFAG---H-----------SL---GE-YAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 242 SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLD 301
+ E + + P + A ++++ ++ + G G ++
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGR------V---AASFSQEALQYVVERVGKR--TGWLVE 1842
Query: 302 IIHA--------LAVSGHGEYIDEVSAIVCFVNI 327
I +G +D V+ ++ F+ +
Sbjct: 1843 I--VNYNVENQQYVAAGDLRALDTVTNVLNFIKL 1874
Score = 36.6 bits (84), Expect = 0.047
Identities = 38/217 (17%), Positives = 64/217 (29%), Gaps = 104/217 (47%)
Query: 719 TQDLPSLVTVVRAVCENWEKGEEGEKEEEGEEKTAGQLIDMDRIFAGNVLLDIYKATRQD 778
TQ P+L + +A E+ + +G LI D FAG
Sbjct: 1732 TQ--PALTLMEKAAFEDLK--------SKG-------LIPADATFAG------------- 1761
Query: 779 PNVVSHLEQLLNAFVEHAIPISAFSSDYIQNGLG--SALTSDISKALGALTSDDLMP--- 833
H S LG +AL S A ++ + L+
Sbjct: 1762 -----H---------------S----------LGEYAALA---SLA-DVMSIESLVEVVF 1787
Query: 834 ---QPLQY-VP---------SMF-IPRGQPLRCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879
+Q VP M I G+ ++ L+ +++ + G+ E+
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV-VERVGKR---TGWLVEI 1843
Query: 880 -----PDEMQY---------EEITQVSRLPTKDKNKI 902
++ QY + +T V L KI
Sbjct: 1844 VNYNVENQ-QYVAAGDLRALDTVTNV--LNFIKLQKI 1877
Score = 30.4 bits (68), Expect = 3.2
Identities = 53/291 (18%), Positives = 92/291 (31%), Gaps = 90/291 (30%)
Query: 404 IQ-PGVG---Y-SADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHM 458
Q G+G Y ++ AA +++ + D ++ + GF + +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWN-----RADNHFK-------------DTY---GFSILDI 1664
Query: 459 VKTNQP--------GVGYSADAANH---IYHLINKGQIDA--AYRIVNTLARSANINGEQ 505
V N P G N+ I+ I G++ ++ +N + S E+
Sbjct: 1665 VINN-PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 506 LPVGGFLVRHMVKTN--QP-IDKV-LAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYT-- 559
G L T QP + + A L + L P A H L E Y
Sbjct: 1724 ----GLLSA----TQFTQPALTLMEKAAFEDLKSKGLIPADATFA----GHSLGE-YAAL 1770
Query: 560 ---GAVETFEYCVN--QFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDL 614
V + E V +R G ++ + ++ S +G +
Sbjct: 1771 ASLADVMSIESLVEVVFYR-----GMTMQVAVPRDELG---------RSNYGMIAINPGR 1816
Query: 615 MLSFLDAEVLRILQVAEAEFGVGSNTETLRDYVLPV--LSPPNQV--SGEV 661
+ + E L+ V E VG T L V V Q +G++
Sbjct: 1817 VAASFSQEALQ--YVVER---VGKRTGWL---VEIVNYNVENQQYVAAGDL 1859
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit
DNA-dependent RNA polymerase in mitochondria,
transferase; 2.50A {Homo sapiens}
Length = 1134
Score = 59.4 bits (142), Expect = 5e-09
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 130 LISKYCQDGNIEGATKILEFMRD---KTFPISEGVFNALIYGHSQANDMASAEGILTMMS 186
+ A +L K ++ ++NA++ G ++ +L M+
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 187 QAGLEPSAQTYTKLMCGYAKHGDMD 211
AGL P +Y + +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDA 217
Score = 57.9 bits (138), Expect = 1e-08
Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 4/151 (2%)
Query: 143 ATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMC 202
A + + R E L+ + + SQA L Q
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 203 GYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSS---DMASAEGILTMMSQAG 259
+ + Q + + + N ++L + +L M+ AG
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 260 LEPSAQTYTKLMCGYAKHG-DMDSVRRLLAQ 289
L P +Y + + D ++ R L Q
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Score = 52.5 bits (124), Expect = 6e-07
Identities = 22/135 (16%), Positives = 33/135 (24%), Gaps = 22/135 (16%)
Query: 244 DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDI- 302
+ + SQA L Q + LL L +
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 303 -----IHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYA 357
+ A G + L M+ AGL P +Y +
Sbjct: 167 MYNAVMLGWARQGA-------------FKELVYVLF--MVKDAGLTPDLLSYAAALQCMG 211
Query: 358 KHG-DMDSIRRLLAQ 371
+ D +I R L Q
Sbjct: 212 RQDQDAGTIERCLEQ 226
Score = 42.1 bits (97), Expect = 0.001
Identities = 18/149 (12%), Positives = 41/149 (27%), Gaps = 10/149 (6%)
Query: 79 VPLDISHYNALLRVYLDN---EHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
+ A + L + Y + ++ +
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY------NAVMLGWA 176
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA-NDMASAEGILTMMSQAGLEPSA 194
+ G + +L ++D + A + + D + E L MSQ GL+ A
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 195 QTYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223
L+ + + ++ P+
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET:
D15; 2.40A {Homo sapiens}
Length = 311
Score = 46.0 bits (110), Expect = 3e-05
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 22/90 (24%)
Query: 819 ISKALGALTSDDLMPQP--LQYVPSMFIPRGQPL-------------------RCLDKDP 857
I K LG L QY + IP + + CL DP
Sbjct: 215 IRKTLGDLI-PRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDP 273
Query: 858 LRRWSCDQLLRHPYFNGYYFEVPDEMQYEE 887
R +C+QLL HPYF ++++
Sbjct: 274 TERLTCEQLLHHPYFENIREIEDLAKEHDK 303
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros
picked threonine kinase, SGC, structural genomics
consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB:
3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Length = 313
Score = 43.8 bits (104), Expect = 1e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQ 884
CL +DP +R S +LL HPY V +
Sbjct: 275 CCLKRDPKQRISIPELLAHPYVQIQTHPVNQMAK 308
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein,
serine/threonine-protein kinase; HET: 537 7PE; 2.88A
{Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 43.3 bits (102), Expect = 2e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQ 884
CL +DP +R S +LL HPY V +
Sbjct: 303 CCLKRDPKQRISIPELLAHPYVQIQTHPVNQMAK 336
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase
activation, phosphorylation, ATP- binding,
nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Length = 343
Score = 43.2 bits (102), Expect = 3e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQ 884
CL +DP +R S +LL HPY V +
Sbjct: 256 CCLKRDPKQRISIPELLAHPYVQIQTHPVNQMAK 289
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET:
DKI; 1.53A {Homo sapiens}
Length = 331
Score = 42.2 bits (100), Expect = 5e-04
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFN 873
+CL DP +R C +LL H +F
Sbjct: 289 KCLHIDPDKRPFCAELLHHDFFQ 311
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 42.4 bits (100), Expect = 6e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPD 881
+CL+ DP R + Q LRHP+ + P
Sbjct: 391 QCLEWDPAVRMTPGQALRHPWLRRRLPKPPT 421
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Length = 303
Score = 40.0 bits (94), Expect = 0.003
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
CL KDP +R + +LLRH +F
Sbjct: 270 LCLQKDPEKRPTAAELLRHKFF 291
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 40.1 bits (94), Expect = 0.003
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 850 LRCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEITQVS 892
L DP +R L+ HP+ + E+
Sbjct: 315 SPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDRELYGSG 357
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain,
kinase and RNAse function, ATP binding ssRNA
dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo
sapiens}
Length = 432
Score = 40.1 bits (94), Expect = 0.003
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
+ + DP +R S +L+HP+F
Sbjct: 266 KMIAMDPQKRPSAKHVLKHPFF 287
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant,
structural genomics consortium, SCG, binding,
nucleotide-binding, phosphoprotein; HET: STU; 2.26A
{Homo sapiens} PDB: 3enm_A
Length = 290
Score = 39.5 bits (93), Expect = 0.003
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+CL K+ R + +L++HP+F +
Sbjct: 249 QCLKKNSKERPTYPELMQHPFFTLH 273
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 39.7 bits (93), Expect = 0.003
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
CL KD +R ++LL H + Y
Sbjct: 266 DCLTKDHRKRPKYNKLLEHSFIKRY 290
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP
complex, transferase; HET: ANP; 2.30A {Homo sapiens}
PDB: 3alo_A*
Length = 327
Score = 39.6 bits (93), Expect = 0.004
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
CL KD +R +LL+HP+ Y
Sbjct: 268 LCLTKDESKRPKYKELLKHPFILMY 292
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat
protein, ADA protein, ATP-binding, cell cycle, kinase,
nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo
sapiens} PDB: 2wtk_B*
Length = 389
Score = 39.5 bits (92), Expect = 0.004
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
+CL ++P R S LL H +F
Sbjct: 316 QCLQRNPDARPSASTLLNHSFF 337
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A
{Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 39.3 bits (92), Expect = 0.005
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
R LD DP R L+H +F
Sbjct: 355 RMLDYDPKTRIQPYYALQHSFF 376
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition
state, activation helix, serine/threonine-PR kinase;
HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Length = 340
Score = 38.9 bits (91), Expect = 0.005
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+CL K+ R + +L++HP+F +
Sbjct: 293 QCLKKNSKERPTYPELMQHPFFTLH 317
>3qyz_A Mitogen-activated protein kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding CE
phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus
norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A*
4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A
3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A*
2oji_A* ...
Length = 364
Score = 39.2 bits (92), Expect = 0.005
Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 42/114 (36%)
Query: 819 ISKALGALTSDDLM----PQPLQYVPSMFIPRGQPL----------------RCLDKDPL 858
I LG+ + +DL + Y+ S+ P + L +P
Sbjct: 244 ILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPH 303
Query: 859 RRWSCDQLLRHPYFNGYY---------------FEVPD-------EMQYEEITQ 890
+R +Q L HPY YY E+ D E+ +EE +
Sbjct: 304 KRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKLKELIFEETAR 357
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase;
HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Length = 367
Score = 38.8 bits (91), Expect = 0.005
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 41/113 (36%)
Query: 819 ISKALGALTSDDLM----PQPLQYVPSMFIPRGQPL----------------RCLDKDPL 858
I K G ++ + + Y+ + + + L D
Sbjct: 238 IMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAE 297
Query: 859 RRWSCDQLLRHPYFNGYY--------------FEVPD-------EMQYEEITQ 890
+R + + L HPYF + F+ D + Y+E+
Sbjct: 298 QRVTAGEALAHPYFESLHDTEDEPQVQKYDDSFDDVDRTLDEWKRVTYKEVLS 350
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine
kinase, transferase; 1.80A {Rattus norvegicus} SCOP:
d.144.1.7 PDB: 3fpq_A
Length = 290
Score = 38.9 bits (91), Expect = 0.006
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 821 KALGALTSDDLMPQPLQYVPSM----FIPRGQPLRCLDKDPLRRWSCDQLLRHPYF 872
+ + + P V I C+ ++ R+S LL H +F
Sbjct: 236 AQIYRRVTSGVKPASFDKVAIPEVKEII-----EGCIRQNKDERYSIKDLLNHAFF 286
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 38.9 bits (90), Expect = 0.006
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQ 884
R L+ D RR + + P F E+ +
Sbjct: 335 RFLNFDRRRRLLPLEAMETPEFLQLQNEISSSLS 368
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP
kinase insertion, autophosphorylation, transferase; HET:
BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X*
2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A*
2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A*
3l8x_A* 3mvl_A* 3mvm_A* ...
Length = 367
Score = 38.9 bits (91), Expect = 0.006
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 21/59 (35%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY--------------FEVPD-------EMQYEEI 888
+ L D +R + Q L H YF Y+ E D + Y+E+
Sbjct: 294 KMLVLDSDKRITAAQALAHAYFAQYHDPDDEPVADPYDQSLESRDLLIDEWKSLTYDEV 352
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3;
transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae}
PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Length = 353
Score = 38.8 bits (91), Expect = 0.007
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEITQ 890
R L DP +R + + L HPY Y+ + DE + E I
Sbjct: 288 RMLVFDPAKRITAKEALEHPYLQTYH-DPNDEPEGEPIPP 326
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 38.8 bits (91), Expect = 0.007
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
+ L+ DP +R + + L+HP+F+
Sbjct: 311 KMLEYDPAKRITLREALKHPFFDLLK 336
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A
3nr9_A*
Length = 355
Score = 38.5 bits (90), Expect = 0.007
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880
R L+ DP +R + + L HP+F G E
Sbjct: 316 RMLEFDPAQRITLAEALLHPFFAGLTPEER 345
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding,
transferase, nucleotide-binding; HET: SEP; 1.6A {Homo
sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A*
2bva_A*
Length = 321
Score = 38.5 bits (90), Expect = 0.007
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
R L +DP R + +LL HP+
Sbjct: 277 RMLVRDPQERATAQELLDHPFL 298
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET:
824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A*
3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Length = 289
Score = 38.5 bits (90), Expect = 0.007
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 851 RCLDKDPLRRWSCDQLLRHPY 871
+ DP RR S L++H
Sbjct: 262 VMIHPDPERRPSAMALVKHSV 282
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding,
phosphorylation, allosteric enzyme, alternative
splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A
{Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A*
1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Length = 297
Score = 38.4 bits (90), Expect = 0.008
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
RCL+ D +R S +LL+H +
Sbjct: 252 RCLEMDVEKRGSAKELLQHQFL 273
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell
cycle progression, phosphorylation, disease mutation,
nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB:
4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Length = 302
Score = 38.5 bits (90), Expect = 0.008
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
LDK+P R S QLL HP+
Sbjct: 258 IALDKNPETRPSAAQLLEHPFV 279
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 38.1 bits (89), Expect = 0.010
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
L+ DP R + + LL P
Sbjct: 287 MMLEPDPKLRATAEALLALPVL 308
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 38.1 bits (89), Expect = 0.010
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
+CL K P +R + QLL+HP+
Sbjct: 261 QCLVKSPEQRATATQLLQHPFV 282
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular
signal regulated kinase 3, serine phosphorylation,
threonine phosphorylation; 2.25A {Homo sapiens}
Length = 320
Score = 38.0 bits (89), Expect = 0.010
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 20/83 (24%)
Query: 819 ISKALGALTSDDLM---PQPLQYVPSMFIPRGQPL----------------RCLDKDPLR 859
I +++ + +D Y+ + +PL + L P+
Sbjct: 237 ILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMD 296
Query: 860 RWSCDQLLRHPYFNGYYFEVPDE 882
R + ++ L HPY + Y F + DE
Sbjct: 297 RLTAEEALSHPYMSIYSFPM-DE 318
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP
kinase, PMK, STK26, stress-activated protein kinase,
structural genomics, PSI; 2.09A {Homo sapiens}
Length = 353
Score = 38.0 bits (89), Expect = 0.012
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
+ L+ D +R + Q L HP+F +
Sbjct: 288 KMLELDVDKRLTAAQALTHPFFEPFR 313
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
3sdj_A*
Length = 434
Score = 38.2 bits (89), Expect = 0.012
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+ +D DPL+R + ++LRHP F
Sbjct: 278 QMIDHDPLKRPTAMKVLRHPLFWPK 302
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal
transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 37.7 bits (88), Expect = 0.012
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
+D DP +R LL + +
Sbjct: 266 LLIDHDPNKRPGARTLLNSGWLPVKH 291
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Length = 360
Score = 37.7 bits (88), Expect = 0.013
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
L DP R S +LL+H +
Sbjct: 338 SILQIDPTLRPSPAELLKHKFL 359
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase;
HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB:
1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A*
1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A*
3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Length = 420
Score = 37.8 bits (88), Expect = 0.013
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 12/59 (20%)
Query: 833 PQPLQYVPSMFIPRGQPL------RCLDKDPLRRWSCDQLLRHPYFNGYY---FEVPDE 882
P +F PR P R L+ P R + + H +F+ ++P+
Sbjct: 298 AHPWT---KVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNG 353
>3niz_A Rhodanese family protein; structural genomics, structural genomics
consortium, SGC, phosphotransferase, cyclin dependent
kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB:
2qkr_A*
Length = 311
Score = 37.5 bits (88), Expect = 0.014
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 833 PQPLQYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEM 883
+P + F G L L DP +R S + HPYF ++ ++
Sbjct: 263 KKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFK----DLDPQI 311
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1,
peptide drug, prostate cancer, transferase; HET: ANP;
1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A*
3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A*
2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A*
3cxw_A* 3cy3_A* 2bik_B* ...
Length = 320
Score = 37.7 bits (88), Expect = 0.014
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEITQVSRLPTK 897
CL P R + +++ HP+ +P E + +S P+K
Sbjct: 276 WCLALRPSDRPTFEEIQNHPWMQDVL--LPQETAEIHLHSLSPGPSK 320
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK
Ser/Thr protein kinase fold, Ser/Thr protein kinase,
TRA; 1.95A {Leishmania major}
Length = 362
Score = 37.7 bits (88), Expect = 0.014
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDE 882
+ L+ +P RR S +Q LRHPYF + + D
Sbjct: 299 KMLEFNPQRRISTEQALRHPYFESLF-DPLDL 329
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A
{Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Length = 348
Score = 37.8 bits (88), Expect = 0.014
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
CL K P R + + LL+H +
Sbjct: 288 SCLQKIPQDRPTSEVLLKHRFV 309
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling
pathways, linear binding motif; HET: ANP; 1.33A {Homo
sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A*
2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X*
2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A*
1pmq_A* ...
Length = 371
Score = 37.7 bits (88), Expect = 0.016
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
+ L D +R S D+ L+HPY N +Y
Sbjct: 301 KMLVIDASKRISVDEALQHPYINVWY 326
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in
transferase-transferase inhibitor complex; HET: JBI;
2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Length = 464
Score = 37.9 bits (88), Expect = 0.016
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
+ L DP +R S D L+HPY N +Y
Sbjct: 338 KMLVIDPAKRISVDDALQHPYINVWY 363
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural
genomics CON SGC; 2.05A {Plasmodium berghei} PDB:
3nie_A*
Length = 432
Score = 37.8 bits (88), Expect = 0.016
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 21/90 (23%)
Query: 819 ISKALGALTSDDLM----PQPLQYVPSMFIPRGQPL----------------RCLDKDPL 858
I +G T DDL P+ ++Y+ + L L +P
Sbjct: 292 IFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPN 351
Query: 859 RRWSCDQLLRHPYFNGYYFEVPDEMQYEEI 888
+R + DQ L HPY + E +
Sbjct: 352 KRITIDQALDHPYLKDVR-KKKLENFSTKK 380
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase,
metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Length = 295
Score = 37.3 bits (87), Expect = 0.016
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 850 LRCLDKDPLRRWSCDQLLRHPY 871
L+C + DP +R + LL +
Sbjct: 260 LKCFEPDPDKRACANDLLVDEF 281
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding,
serine/threonine-protein kinase, transferase; 1.85A
{Giardia lamblia} PDB: 3gc0_A*
Length = 329
Score = 37.2 bits (87), Expect = 0.017
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 833 PQPL-QYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFN 873
+ L + + ++ G L L+ DP++R S L HPYF+
Sbjct: 280 GKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFS 323
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
two-LOBE protein kinase fold, ATP-binding, nucleotid
binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens}
PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A*
3ggf_A* 2xik_A*
Length = 303
Score = 36.9 bits (86), Expect = 0.020
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
CL+K+P R + +LL+H +
Sbjct: 253 ACLNKEPSFRPTAKELLKHKFI 274
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Length = 326
Score = 37.0 bits (86), Expect = 0.021
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 851 RCLDKDPLRRWSCDQLLRHP 870
CL K+ +R + +QL++HP
Sbjct: 269 SCLVKNHSQRPATEQLMKHP 288
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 37.3 bits (86), Expect = 0.022
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880
L R Q + P + E+
Sbjct: 342 GFLRYPKEDRLLPLQAMETPEYEQLRTELS 371
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural
genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Length = 458
Score = 37.1 bits (86), Expect = 0.022
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 21/90 (23%)
Query: 819 ISKALGALTSDDLM----PQPLQYVPSMFIPRGQPL----------------RCLDKDPL 858
I LG + +D+ +Y+ G L R L +P
Sbjct: 327 IFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPN 386
Query: 859 RRWSCDQLLRHPYFNGYYFEVPDEMQYEEI 888
+R + ++ L HP+F E E
Sbjct: 387 KRITINECLAHPFFKEVR-IAEVETNATEK 415
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation,
protein-protein interaction, PR kinase, cell cycle,
transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP:
d.144.1.7
Length = 346
Score = 36.8 bits (86), Expect = 0.024
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 833 PQPLQYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFN 873
PL ++ S L +P R + Q L+ YF+
Sbjct: 254 GIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFS 296
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase,
serine/threonine-protein kinase, ATP-binding,
phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP:
d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Length = 288
Score = 36.7 bits (86), Expect = 0.028
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 833 PQPLQYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFN 873
P P + G L + L DP +R + Q L H YF
Sbjct: 243 PLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFK 285
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase;
structural genomics consortium, SGC, transferase; 2.37A
{Cryptosporidium parvum iowa II}
Length = 388
Score = 36.6 bits (85), Expect = 0.029
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEI 888
+ L +P +R S + L+HP+ + ++ +E + I
Sbjct: 311 KLLQFNPNKRISANDALKHPFVSIFH-NPNEEPNCDHI 347
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase
inhibitor complex, transferase-transferase activator
complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A*
1ung_A* 1unl_A* 1h4l_A
Length = 292
Score = 36.3 bits (85), Expect = 0.029
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 833 PQPLQYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFN 873
L V G+ L L +P++R S ++ L+HPYF+
Sbjct: 245 TTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFS 287
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 36.6 bits (85), Expect = 0.031
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEE 887
+ ++P R S + +L + + E
Sbjct: 259 QLFKRNPRDRPSVNSILEKGFIAKRIEKFLSPQLIAE 295
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 36.5 bits (85), Expect = 0.031
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
+ L K P R + ++LR
Sbjct: 250 KLLSKKPEDRPNTSEILRTLTV 271
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 36.6 bits (85), Expect = 0.032
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEITQV-SRL 894
+ L P R + Q L HP+ Y E P + + +
Sbjct: 259 KMLTFHPSLRITATQCLEHPWIQKYSSETPTISDLPSLESAMTNI 303
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR;
3.30A {Ustilago maydis}
Length = 394
Score = 36.5 bits (85), Expect = 0.034
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 833 PQPLQYVPSMFIPRGQPL------RCLDKDPLRRWSCDQLLRHPYFNGYY---FEVPDE 882
P P +F PR P R L+ P R + + L HP+F+ +P+
Sbjct: 283 PHPFS---KVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELRTGEARMPNG 338
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase,
cell cycle, inhibition, cyclin-dependent kinase, cancer,
ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A*
2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A*
1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A*
1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Length = 299
Score = 36.4 bits (85), Expect = 0.037
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 833 PQPLQYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFN 873
Q V G+ L + L DP +R S L HP+F
Sbjct: 246 RQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQ 288
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle,
phosphorylation, ATP-BIN cell division, disease
mutation, kinase; 3.00A {Homo sapiens}
Length = 308
Score = 36.0 bits (84), Expect = 0.040
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 833 PQPLQYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFN 873
P+P+Q V G L L +P +R S + L+H Y +
Sbjct: 259 PRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLH 301
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase,
serine/threonine-protein, ATP-binding,
calmodulin-binding; HET: ATP; 2.20A {Oryctolagus
cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Length = 298
Score = 36.1 bits (84), Expect = 0.041
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
R L P +R++ ++ L HP+F Y
Sbjct: 266 RFLVVQPQKRYTAEEALAHPFFQQY 290
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural
genomics, structural consortium, SGC, transferase; HET:
FEF; 2.40A {Homo sapiens}
Length = 324
Score = 36.0 bits (84), Expect = 0.044
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 833 PQPLQYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFN 873
+ L G L + L + R S + ++HP+F
Sbjct: 244 AEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFL 286
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85;
cyclin-dependent kinase, signaling protein,transfera
cycle complex; HET: MES AGS; 2.90A {Saccharomyces
cerevisiae} PDB: 2pk9_A*
Length = 317
Score = 36.0 bits (84), Expect = 0.047
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 830 DLMPQPLQYVPSMFIPRGQPL----------RCLDKDPLRRWSCDQLLRHPYFN 873
++ +P + + + P + L +P R S Q L HP+F
Sbjct: 245 NIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFA 298
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase,
ATP-binding, disease mutation, nucleoti binding,
phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB:
3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A*
2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A*
3orn_A* 3os3_A* 3sls_A* 1s9i_A*
Length = 360
Score = 36.0 bits (83), Expect = 0.051
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+CL K+P R QL+ H +
Sbjct: 307 KCLIKNPAERADLKQLMVHAFIKRS 331
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant,
catalytic domain, synthetic inhibitor, TRAN transferase
inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB:
4g34_A*
Length = 299
Score = 35.8 bits (83), Expect = 0.052
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFE 878
L P+ R ++ + F F
Sbjct: 262 DMLSPSPMERPEAINIIENAVFEDLDFP 289
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 36.2 bits (84), Expect = 0.053
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+ L D RR S Q L HP+
Sbjct: 274 QMLQFDSQRRISAQQALEHPWIKEM 298
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 36.2 bits (84), Expect = 0.055
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEITQVSRL 894
L D +R + ++ L + Y + Q +S +
Sbjct: 284 LMLTYDYNKRCTAEEALNSRWIKKYANNINKSDQKTLCGALSNM 327
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 35.9 bits (83), Expect = 0.055
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 850 LRCLDKDPLRRWSCDQLLRHPY 871
L K+P+ R S +L R
Sbjct: 291 QEGLRKEPVHRASAMELRRKVG 312
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV;
calmodulin-binding, nucleotide-binding,
serine/threonine-protein kinase, ATP-binding; HET: DKI;
2.17A {Homo sapiens}
Length = 349
Score = 35.8 bits (83), Expect = 0.058
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
+ + DP +R + Q L+HP+ G
Sbjct: 288 KLIVLDPKKRLTTFQALQHPWVTG 311
>3i4z_A Tryptophan dimethylallyltransferase; prenyl transferase, PT barrel,
alkaloid metabolism; 1.76A {Aspergillus fumigatus} PDB:
3i4x_A
Length = 465
Score = 35.9 bits (82), Expect = 0.059
Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 15/138 (10%)
Query: 166 IYGHSQANDMASAEGILTM-------MSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIP 218
IY Q + + E + T+ + GL + + +
Sbjct: 266 IYLLEQMVSLEAMEDLWTLGGRRRDASTLEGLSLVRELWDLIQLSPGLKSYPAPYLPLGV 325
Query: 219 SLKPQSELFLCFSFQLTNLL--------ILVSSDMASAEGILTMMSQAGLEPSAQTYTKL 270
+ L F+ + + +DMA A+ + T + G A+TY
Sbjct: 326 IPDERLPLMANFTLHQNDPVPEPQVYFTTFGMNDMAVADALTTFFERRGWSEMARTYETT 385
Query: 271 MCGYAKHGDMDSVRRLLA 288
+ Y H D D + L A
Sbjct: 386 LKSYYPHADHDKLNYLHA 403
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent
kinase, cell cycle control, alpha/beta, complex
(inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP:
d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B*
2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B
2w9f_B
Length = 326
Score = 35.6 bits (83), Expect = 0.063
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 833 PQPLQYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEM 883
QP++ + G+ L +CL +P +R S L HPYF +
Sbjct: 259 AQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLERCKENLD 311
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 35.8 bits (83), Expect = 0.064
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+ L P R S L H + Y
Sbjct: 264 KMLTYVPSMRISARDALDHEWIQTY 288
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase,
nucleus, meiosis, mitosis, cytoplasm, metal-binding,
phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB:
2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A*
2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A*
4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Length = 279
Score = 35.3 bits (82), Expect = 0.069
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
R L+ R S +++L +P +
Sbjct: 250 RMLNLKDYHRPSVEEILENPLILEH 274
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2
calmodulin-like EF...; structural genomics, protist
parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa
II}
Length = 345
Score = 35.6 bits (82), Expect = 0.071
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
L+++ R+ + L+HP+ + +
Sbjct: 313 NLLNRNVDERFDAMRALQHPWISQF 337
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer,
anticancer drug design; HET: YCF; 1.77A {Homo sapiens}
PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A*
2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A*
2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Length = 322
Score = 35.3 bits (82), Expect = 0.072
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+ L DP R++ ++ LRHP+
Sbjct: 257 KLLVVDPKARFTTEEALRHPWLQDE 281
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase,
transferase; HET: ANP; 2.60A {Plasmodium falciparum}
PDB: 2pmn_X* 2pmo_X*
Length = 348
Score = 35.1 bits (81), Expect = 0.080
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEITQVSRL 894
L K+P R + + L+H + E E E + +L
Sbjct: 305 LFLRKNPAERITSEDALKHEWLADTNIEDLREFSKELYKKRKKL 348
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase,
kinase, membrane, ATP-binding, prenylation,
serine/threonine-protein kinase, alternative splicing;
HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Length = 304
Score = 34.9 bits (81), Expect = 0.088
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
L+KDP R++C++ L HP+ +G
Sbjct: 244 HLLEKDPNERYTCEKALSHPWIDG 267
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 35.1 bits (81), Expect = 0.096
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+ L DP R++ ++ LRHP+
Sbjct: 382 KLLVVDPKARFTTEEALRHPWLQDE 406
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex,
transferase,transcription; HET: BAX; 2.20A {Homo
sapiens}
Length = 405
Score = 35.2 bits (81), Expect = 0.098
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFN 873
+ L DP++R + +Q ++ PYF
Sbjct: 316 KLLTMDPIKRITSEQAMQDPYFL 338
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding,
serine/threonine-protein kinase, CGD3_920, transferase;
HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB:
3dfa_A 3ma6_A*
Length = 287
Score = 34.9 bits (81), Expect = 0.10
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+ L P R + Q L HP+ Y
Sbjct: 259 KMLTFHPSLRITATQCLEHPWIQKY 283
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: SEP BX7;
1.80A {Homo sapiens}
Length = 319
Score = 34.7 bits (80), Expect = 0.10
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 807 IQNGLGSALTSDISKAL-GALTSDDLMPQPLQYVPSMFIPRGQPLR-CLDKDPLRRWSCD 864
I G S S + KA G + MP + + L L+ D + W D
Sbjct: 239 IITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFD 298
Query: 865 QLLRHPYF 872
Q
Sbjct: 299 QFFAETSD 306
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 34.9 bits (80), Expect = 0.10
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
L P R ++ + F
Sbjct: 308 DMLSPSPTERPEATDIIENAIF 329
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer,
leukemia, transferase, ATP-binding, proto- oncogene,
phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Length = 312
Score = 34.6 bits (80), Expect = 0.11
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880
RCL P R S +++L P+ +VP
Sbjct: 266 RCLAPKPSSRPSLEEILLDPWMQTPAEDVP 295
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif,
transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A*
2hw6_A
Length = 316
Score = 34.6 bits (80), Expect = 0.12
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+ L +D +R S Q+L+HP+ G
Sbjct: 278 KLLVRDAKQRLSAAQVLQHPWVQGC 302
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4
calmodulin like EF...; calcium dependent protein kinase;
HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II}
PDB: 2qg5_A*
Length = 277
Score = 34.5 bits (80), Expect = 0.12
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
R L K P +R + Q L H +F
Sbjct: 244 RLLTKSPKQRITSLQALEHEWFEKQ 268
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 34.7 bits (80), Expect = 0.12
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
R L DP R + +Q L+HP+F
Sbjct: 342 RLLQVDPEARLTAEQALQHPFF 363
>3o2k_A Brevianamide F prenyltransferase; PT barrel; HET: DST QRP MES;
2.40A {Aspergillus fumigatus} PDB: 3o24_A*
Length = 474
Score = 34.8 bits (79), Expect = 0.13
Identities = 22/141 (15%), Positives = 38/141 (26%), Gaps = 19/141 (13%)
Query: 166 IYGHSQANDMASAEGILTM-------MSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIP 218
Y + ++ E I T + GLE + + + M ++
Sbjct: 295 FYASERHVNLQMVEDIWTFGGLRRDPDALRGLELLRHFW-ADIQMREGYYTMPRGFCELG 353
Query: 219 SLKPQSELFLCFSFQLTN-----------LLILVSSDMASAEGILTMMSQAGLEPSAQTY 267
E + F F L + + + EG+ T + G E A Y
Sbjct: 354 KSSAGFEAPMMFHFHLDGSQSPFPDPQMYVCVFGMNSRKLVEGLTTFYRRVGWEEMASHY 413
Query: 268 TKLMCGYAKHGDMDSVRRLLA 288
D + L A
Sbjct: 414 QANFLANYPDEDFEKAAHLCA 434
>4e0t_A Cyclic dipeptide N-prenyltransferase; PT-fold,
C(3)B-prenyltransferase; 2.25A {Aspergillus fumigatus}
PDB: 4e0u_A*
Length = 428
Score = 34.7 bits (79), Expect = 0.14
Identities = 14/133 (10%), Positives = 44/133 (33%), Gaps = 11/133 (8%)
Query: 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSE 225
+Y +A AE T+ + E +A + +++ G + +
Sbjct: 275 VYIADPLVTLARAEEHWTLGGRLTDEDAAVGLEIIRGLWSELGIIQGPLEPSAM-MEKGL 333
Query: 226 LFLCFSFQLTN----------LLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 275
L + ++++ + + + A + + + A+ + + + Y
Sbjct: 334 LPIMLNYEMKAGQRLPKPKLYMPLTGIPETKIARIMTAFFQRHDMPEQAEVFMENLQAYY 393
Query: 276 KHGDMDSVRRLLA 288
+ +++ R A
Sbjct: 394 EGKNLEEATRYQA 406
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK,
ATP-binding, metal-binding, NUCL binding,
serine/threonine-protein kinase, transferase; 2.00A
{Homo sapiens} PDB: 3kn5_A
Length = 325
Score = 34.2 bits (79), Expect = 0.17
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
L DP +R L + +
Sbjct: 253 GLLTVDPNKRLKMSGLRYNEWLQDG 277
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors,
virtual screening, X-RAY CO- crystal analysis,
structure-based drug design (SBDD); HET: MMH; 1.90A
{Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A*
2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A*
3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A*
3lau_A* 2wtv_A* ...
Length = 279
Score = 33.7 bits (78), Expect = 0.19
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEITQ 890
R L +P +R ++L HP+ + + E ++
Sbjct: 240 RLLKHNPSQRPMLREVLEHPWITANSSKPSNCQNKESASK 279
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3,
ZIP kinase, ZIPK, DAP kinase like kinase, DLK,
structural genomics consortium; HET: 7CP; 1.24A {Homo
sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A*
3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A*
3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A*
3dgk_A ...
Length = 283
Score = 33.7 bits (78), Expect = 0.19
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
R L KDP RR + Q L H +
Sbjct: 248 RLLVKDPKRRMTIAQSLEHSWIKA 271
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis,
transferase; 2.00A {Leishmania major}
Length = 360
Score = 34.2 bits (79), Expect = 0.20
Identities = 15/79 (18%), Positives = 22/79 (27%), Gaps = 21/79 (26%)
Query: 819 ISKALGALTSDDLM---------------PQPLQYVPSMFIPRGQPL------RCLDKDP 857
I + LG + + L P V S + L P
Sbjct: 244 IVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLP 303
Query: 858 LRRWSCDQLLRHPYFNGYY 876
R + L HPYF+ +
Sbjct: 304 EERMKPYEALCHPYFDELH 322
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics,
parasitology, structural genomics consortium, SGC,
ATP-binding, nucleotide-binding; HET: ANP; 2.55A
{Toxoplasma gondii}
Length = 285
Score = 33.7 bits (78), Expect = 0.20
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
+ L KDP RR S Q+L H +F
Sbjct: 261 QMLTKDPERRPSAAQVLHHEWF 282
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2,
autoinhibitory, ATP-binding, nucleotide phosphorylation,
serine/threonine-protein kinase; 2.00A {Mus musculus}
PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Length = 342
Score = 33.8 bits (78), Expect = 0.23
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+ L DP +R + +LRHP+ +
Sbjct: 260 KMLHVDPHQRLTAALVLRHPWIVHW 284
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum,
ATP-binding, kinase, nucleoti binding; HET: PTR DRK;
2.65A {Cryptosporidium parvum iowa II}
Length = 383
Score = 33.9 bits (78), Expect = 0.23
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEITQVSRLPTKDKNKI 902
+ L +P R + + + HP+F+ E+ S P I
Sbjct: 304 QILRYEPDLRINPYEAMAHPFFDHLR-----NSYESEVKNNSNFPHGVNQNI 350
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 33.8 bits (78), Expect = 0.24
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+ L +P +R + + L+HP+ +
Sbjct: 250 KMLTINPSKRITAAEALKHPWISHR 274
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding,
nucleotide-binding, serine/threonine-protein kinase,
transferase; HET: TPO; 1.72A {Caenorhabditis elegans}
PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Length = 284
Score = 33.7 bits (78), Expect = 0.24
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
L +P +R + DQ L+ P+
Sbjct: 244 SMLTVNPKKRITADQALKVPWICN 267
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase;
1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A
2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Length = 321
Score = 33.8 bits (78), Expect = 0.26
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
+ L K+ +R + + LRHP+
Sbjct: 255 KLLVKETRKRLTIQEALRHPWITP 278
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB:
2wqn_A*
Length = 310
Score = 33.4 bits (77), Expect = 0.26
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 851 RCLDKDPLRRWSCDQLLRHPY 871
C++ DP +R +
Sbjct: 273 MCINPDPEKRPDVTYVYDVAK 293
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine
kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing
protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB:
3lm0_A*
Length = 327
Score = 33.4 bits (77), Expect = 0.28
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQ 884
L K+P +R + + L H + + FE +
Sbjct: 270 SLLVKNPEKRPTAEICLSHSWLQQWDFENLFHPE 303
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET:
AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Length = 361
Score = 33.5 bits (77), Expect = 0.29
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
+ L K+ +R + + LRHP+
Sbjct: 255 KLLVKETRKRLTIQEALRHPWITP 278
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated,
transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A*
2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Length = 362
Score = 33.4 bits (77), Expect = 0.29
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
L +P +R + DQ L+ P+
Sbjct: 267 SMLTVNPKKRITADQALKVPWICN 290
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin
dependent protein kinase, Mg synaptic plasticity,
pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB:
3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Length = 351
Score = 33.4 bits (77), Expect = 0.30
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
R L DP R + + L HP+
Sbjct: 269 RMLMLDPAERITVYEALNHPWLKER 293
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens}
SCOP: d.144.1.7
Length = 321
Score = 33.4 bits (77), Expect = 0.32
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
R L K+ R + + L+HP+
Sbjct: 240 RLLVKERKSRMTASEALQHPWLKQ 263
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
2ou7_A* 3fc2_A* 3thb_A*
Length = 335
Score = 33.4 bits (77), Expect = 0.32
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEITQVSRLPTKDKN 900
+ L DP R + ++LL +F Y +P + +T R +
Sbjct: 274 KMLQTDPTARPTINELLNDEFFTSGY--IPARLPITCLTIPPRFSIAPSS 321
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit;
HET: MES; 2.60A {Homo sapiens}
Length = 326
Score = 33.4 bits (77), Expect = 0.32
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
R L KDP +R + L+HP+
Sbjct: 254 RLLVKDPKKRMTIQDSLQHPWIKP 277
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis
compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB:
3kga_A* 3m42_A*
Length = 299
Score = 33.0 bits (76), Expect = 0.33
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
L +P +R + + + HP+
Sbjct: 239 NLLKTEPTQRMTITEFMNHPWIMQS 263
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo
sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X*
3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A*
3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Length = 336
Score = 33.1 bits (76), Expect = 0.39
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
L DP R + Q + HP+ N
Sbjct: 270 LLLKTDPTERLTITQFMNHPWINQS 294
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 33.2 bits (76), Expect = 0.41
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
L +P +R + + + HP+
Sbjct: 304 NLLKTEPTQRMTITEFMNHPWIMQS 328
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia
californica} SCOP: d.144.1.7
Length = 387
Score = 33.2 bits (76), Expect = 0.41
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
L K+P +R + L HP+ G
Sbjct: 287 NLLQKEPRKRLTVHDALEHPWLKG 310
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1,
selectivity residues, POLO-like K structure based drug
design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo
sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A*
3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A*
3db6_A* 3dbe_A* 3dbf_A*
Length = 294
Score = 32.9 bits (76), Expect = 0.42
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEITQVSRLPTKD 898
+ L DP R + ++LL +F Y +P + +T R
Sbjct: 248 KMLQTDPTARPTINELLNDEFFTSGY--IPARLPITCLTIPPRFSIAP 293
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 33.1 bits (76), Expect = 0.43
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
+ L K+ R S + L+HP+ + +
Sbjct: 325 KLLIKEKSWRISASEALKHPWLSDH 349
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 32.8 bits (74), Expect = 0.44
Identities = 11/75 (14%), Positives = 29/75 (38%)
Query: 658 SGEVFSQLRSVGVTIGSITSAYVVHMLRQHNLKEAALLAKSFRAHYAKVVVRPVLAVSYL 717
G ++ + + +IT + Q N +A ++ ++ +V + AV Y
Sbjct: 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYG 146
Query: 718 RTQDLPSLVTVVRAV 732
+ ++ V++
Sbjct: 147 AAERWTDVIDQVKSA 161
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 33.1 bits (75), Expect = 0.46
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFN 873
L R Q + P +
Sbjct: 346 GFLRYPKEDRLLPLQAMETPEYE 368
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 33.3 bits (76), Expect = 0.46
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPD 881
+ L DP R + Q L HP+ D
Sbjct: 393 KLLLADPNTRMTIHQALEHPWLTPGNAPGRD 423
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK,
STK18, PSI, structural genomics, protein structure
initiative; HET: ANP; 2.25A {Homo sapiens}
Length = 278
Score = 32.1 bits (74), Expect = 0.70
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDE 882
+ L ++P R S +L HP+ + +
Sbjct: 245 QLLRRNPADRLSLSSVLDHPFMSRNSSTKSKD 276
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, staurosporine-binding,
serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A
{Rattus norvegicus}
Length = 476
Score = 32.1 bits (73), Expect = 0.93
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFN----GYYFEVPDEMQYEEI 888
L DP++R + + H +F Y F I
Sbjct: 249 HMLQVDPMKRATIKDIREHEWFKQDLPKYLFPEDPSYSSTMI 290
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase,
PASK, protein kinase, drug discovery, ATP-bindin kinase,
nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Length = 335
Score = 31.6 bits (72), Expect = 1.0
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 838 YVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFNGYY----FEVPDEMQYEEI 888
+ P + L L P RR + ++L+ P+ + + + +
Sbjct: 242 HPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTDPWVTQPVNLADYTWEEVFRVNKP 298
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine
protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3,
ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A*
1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Length = 328
Score = 31.5 bits (72), Expect = 1.0
Identities = 8/37 (21%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEE 887
R L +P++R + +Q+++ + N + E + + E
Sbjct: 247 RFLVLNPIKRGTLEQIMKDRWINAGH-EEDELKPFVE 282
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding,
nucleotide-binding, phosphoprotei
serine/threonine-protein kinase, transferase; 2.80A
{Schizosaccharomyces pombe}
Length = 336
Score = 31.9 bits (73), Expect = 1.0
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY--FEVPDEMQYEE------ITQVSRLPTKDKNKI 902
R + DP++R + ++ R P+FN + P E ++++ ++ I
Sbjct: 241 RMIVADPMQRITIQEIRRDPWFNVNLPDYLRPMEEVQGSYADSRIVSKLGEAMGFSEDYI 300
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding
protein complex, transferase metal protein complex,
nucleus; HET: ANP; 2.65A {Homo sapiens}
Length = 305
Score = 31.5 bits (72), Expect = 1.1
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
L+ +P +R+S Q+ +H +F +
Sbjct: 246 GMLEYEPAKRFSIRQIRQHSWFRKKH 271
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding;
HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A*
3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A*
Length = 351
Score = 31.4 bits (72), Expect = 1.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFN 873
+ L DP +R D L H +F
Sbjct: 294 KLLVLDPAQRIDSDDALNHDFFW 316
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding,
serine/threonine-protein kinase, ATP-binding,
transferase, coiled coil, cell division, kinase; HET:
TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A*
3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A*
3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A*
2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Length = 284
Score = 31.4 bits (72), Expect = 1.3
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
+ L P +R ++ HP+
Sbjct: 245 KLLRYHPPQRLPLKGVMEHPWVKANS 270
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 31.4 bits (71), Expect = 1.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 850 LRCLDKDPLRRWSCDQLLRHPYFN 873
L L+ P +R + + LRHP+ N
Sbjct: 373 LPMLELIPEKRATAAECLRHPWLN 396
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A
{Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A
2fh9_A 3mn3_A
Length = 275
Score = 31.0 bits (71), Expect = 1.6
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
R L +PL R S ++++ +F
Sbjct: 245 RMLIVNPLNRISIHEIMQDDWFKVDL 270
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
lipoprotein, myristate, PA phosphorylation; HET: STU;
2.6A {Homo sapiens}
Length = 317
Score = 30.8 bits (70), Expect = 1.8
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 851 RCLDKDPLRRWSCDQLLRHP 870
+ DP +R LL
Sbjct: 282 SMMTVDPHQRPHIPLLLSQL 301
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2;
ATP-binding, cholesterol biosynthesis, fatty acid
biosynthesis;kinase, lipid synthesis; 1.85A {Homo
sapiens} PDB: 3aqv_A* 2yza_A*
Length = 276
Score = 30.6 bits (70), Expect = 1.9
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
L DPL+R + + H +F
Sbjct: 244 HMLQVDPLKRATIKDIREHEWFKQDL 269
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor,
transferase-transferase inhibitor CO; HET: ANP; 1.30A
{Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A*
3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A
3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A*
3owj_A* 3owk_A* ...
Length = 330
Score = 30.7 bits (70), Expect = 2.1
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 853 LDK----DPLRRWSCDQLLRHPYFNGY 875
LDK D R + + + HPYF
Sbjct: 300 LDKLLRYDHQSRLTAREAMEHPYFYTV 326
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral
protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified
influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A*
2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A*
3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Length = 509
Score = 30.4 bits (68), Expect = 3.1
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 78 DVPLDISHYNALLRVYLDNEHTFSPTDF-LAKLESQGIEPNRVTYQQLISNSKLISKYC 135
D LD+ YNA L V ++NE T D + L + QL N K + C
Sbjct: 426 DGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDK-------VRMQLRDNVKELGNGC 477
>1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion
precursor, virus/viral protein protein; HET: NAG BMA
MAN; 2.80A {Influenza a virus} SCOP: b.19.1.2 h.3.1.1
Length = 494
Score = 30.4 bits (68), Expect = 3.2
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 78 DVPLDISHYNALLRVYLDNEHTFSPTDF-LAKLESQGIEPNRVTYQQLISNSKLISKYC 135
D +D+ YNA L V L+N+HT TD + KL + T +QL N++ + C
Sbjct: 407 DTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEK-------TRRQLRENAEEMGNGC 458
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2,
E.C.2.7.11.17, phosphorylation, AMPKK, metabolism,
binding, calmodulin-binding; HET: 609; 2.40A {Homo
sapiens}
Length = 298
Score = 29.9 bits (68), Expect = 3.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFN 873
R LDK+P R ++ HP+
Sbjct: 275 RMLDKNPESRIVVPEIKLHPWVT 297
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling,
transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A
3zuu_A 3uc4_A 3ujg_A 3udb_A
Length = 361
Score = 29.6 bits (67), Expect = 5.3
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 4/56 (7%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFN----GYYFEVPDEMQYEEITQVSRLPTKDKNKI 902
R DP R S ++ H +F + + + +I
Sbjct: 257 RIFVADPATRISIPEIKTHSWFLKNLPADLMNESNTGSQFQEPEQPMQSLDTIMQI 312
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair,
DNA binding protein; 3.41A {Mus musculus}
Length = 1323
Score = 29.1 bits (64), Expect = 8.6
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 201 MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGL 260
+CG++K + +P LK EL + ++ +L+L + A G L G
Sbjct: 1247 LCGHSKIRQDTRLTKHVPLLKKSLELLV---CRVKAMLVLNNCREAFWLGTLKNRDLQGE 1303
Query: 261 EPSAQTYT 268
E +Q +
Sbjct: 1304 EIISQDPS 1311
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint,
transferase-transferase inhib complex; HET: S25; 1.60A
{Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A*
2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Length = 323
Score = 28.4 bits (64), Expect = 9.4
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
+ L ++P R + + + ++N
Sbjct: 244 KILVENPSARITIPDIKKDRWYNKPL 269
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur
genomics, joint center for structural genomics, JCSG;
1.90A {Exiguobacterium sibiricum}
Length = 290
Score = 28.4 bits (63), Expect = 9.5
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 861 WSCDQLLRHPYFNGYYFEVP---DEMQYEEITQVSRLPTKDKN 900
W+ +L+ ++ D + + ++S TK
Sbjct: 238 WTMHELMEESRLTELKVDLGSLVDFFIRKGLIRISYQRTKGLG 280
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein,
glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A
{Influenza a virus} PDB: 2wrh_I*
Length = 222
Score = 28.4 bits (63), Expect = 9.9
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 78 DVPLDISHYNALLRVYLDNEHTFSPTD 104
D LDI YNA L V L+NE T D
Sbjct: 86 DGFLDIWTYNAELLVLLENERTLDFHD 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.391
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,628,259
Number of extensions: 850900
Number of successful extensions: 1800
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1771
Number of HSP's successfully gapped: 158
Length of query: 902
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 800
Effective length of database: 3,853,851
Effective search space: 3083080800
Effective search space used: 3083080800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.8 bits)