BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7671
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75694|NU155_HUMAN Nuclear pore complex protein Nup155 OS=Homo sapiens GN=NUP155 PE=1
SV=1
Length = 1391
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 70/102 (68%)
Query: 4 VFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICID 63
+F+ G DG LYE+ YQ +A WFS C K+ + SSL++++P+ + +++D + QI ID
Sbjct: 226 IFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPILQIAID 285
Query: 64 NSRNVLYTRSELGLISVYDLYERGQGFRSLVSLSEEMIVQQA 105
NSRN+LYTRSE G+I VYDL + GQG + S+S+ IV A
Sbjct: 286 NSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAA 327
>sp|Q99P88|NU155_MOUSE Nuclear pore complex protein Nup155 OS=Mus musculus GN=Nup155 PE=2
SV=1
Length = 1391
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 69/102 (67%)
Query: 4 VFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICID 63
+F+ G DG LYE+ YQ +A WFS C K+ + SSL++++P+ + +++D + QI ID
Sbjct: 226 IFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPIVQIEID 285
Query: 64 NSRNVLYTRSELGLISVYDLYERGQGFRSLVSLSEEMIVQQA 105
NSRN+LYTRSE G+I VYDL GQG + S+S+ IV A
Sbjct: 286 NSRNILYTRSEKGVIQVYDLGHDGQGMSRVASVSQNAIVSAA 327
>sp|P37199|NU155_RAT Nuclear pore complex protein Nup155 OS=Rattus norvegicus GN=Nup155
PE=1 SV=1
Length = 1390
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 68/99 (68%)
Query: 4 VFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICID 63
+F+ G DG LYE+ YQ +A WFS C K+ + SSL++++P+ + +++D + QI ID
Sbjct: 225 IFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPIVQIEID 284
Query: 64 NSRNVLYTRSELGLISVYDLYERGQGFRSLVSLSEEMIV 102
NSRN+LYTRSE G+I VYDL GQG + S+S+ IV
Sbjct: 285 NSRNILYTRSEKGVIQVYDLGHDGQGMSRVASVSQNAIV 323
>sp|Q9URX8|NG06_SCHPO Probable nucleoporin C890.06 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC890.06 PE=3 SV=3
Length = 1315
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 3 VVFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICI 62
+ F G D NLYE YQ + WFS CSK+ +T S +P+F + T D + QI +
Sbjct: 195 IFFSGNKDPNLYEFSYQLEEGWFSRRCSKINITGSVFDNFIPSFF-SFGTHGDGIKQIAV 253
Query: 63 DNSRNVLYTRSELGLISVYDLYERG 87
D+SR++LY E +S Y+L + G
Sbjct: 254 DDSRSLLYVLRETSSVSCYELTKNG 278
>sp|P38181|NU170_YEAST Nucleoporin NUP170 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP170 PE=1 SV=1
Length = 1502
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 3 VVFMGGTDG-NLYEIKYQRDASWFSASCSKVCLTSSSLTYILPT----------FINALI 51
+ F G G N++E+ Y WF++ CSKVCLT S+L +LPT FI AL
Sbjct: 282 IFFAGQASGLNIWELHYSGSDDWFNSKCSKVCLTKSALLSLLPTNMLSQIPGVDFIQALF 341
Query: 52 TQ---------EDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86
++++ Q+ ID R ++Y+ S I Y + E+
Sbjct: 342 EDNSNGNGGFSQETITQLTIDQQRGIIYSLSSKSTIRAYVITEK 385
>sp|P40064|NU157_YEAST Nucleoporin NUP157 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP157 PE=1 SV=1
Length = 1391
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 16/101 (15%)
Query: 3 VVFMGGTDG-NLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALI---------- 51
+ F G TDG N++E++Y + F++ +K+CLT S+L +LPT + I
Sbjct: 272 IFFTGATDGVNVWELQYNCSENLFNSKSNKICLTKSNLANLLPTKLIPSIPGGKLIQKVL 331
Query: 52 -----TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYERG 87
T+E++++Q+ +D SR VL+T S ++ Y + G
Sbjct: 332 EGDAGTEEETISQLEVDQSRGVLHTLSTKSIVRSYLITSNG 372
>sp|O22834|LRK53_ARATH Probable L-type lectin-domain containing receptor kinase V.3
OS=Arabidopsis thaliana GN=LECRK53 PE=3 SV=1
Length = 664
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 7 GGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSR 66
G D LY Q+ SW S + +S+L+Y+ +I+ +I ++ A + ID+
Sbjct: 415 GSLDKYLYGTSDQKQLSW-SQRFKIIKDVASALSYLHHGWIHVVIHRDIKPANVLIDDKM 473
Query: 67 NVLYTRSELGLISVYD 82
N + + GL VYD
Sbjct: 474 NA--SLGDFGLAKVYD 487
>sp|O26223|Y120_METTH Putative NADH dehydrogenase/NAD(P)H nitroreductase
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_120 PE=3 SV=1
Length = 191
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 59 QICIDNSRNVLYTRSELGL----ISVYDLYERGQGFRSLVSLSEEMI 101
Q C S+N+L LGL VY L +R +G R L S+ E +I
Sbjct: 115 QDCSIASQNILLAAHSLGLGAVWTGVYPLEDRVEGIRRLFSIPEHVI 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,538,314
Number of Sequences: 539616
Number of extensions: 1240197
Number of successful extensions: 2904
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2896
Number of HSP's gapped (non-prelim): 9
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)