Query psy7671
Match_columns 115
No_of_seqs 103 out of 175
Neff 5.1
Searched_HMMs 46136
Date Sat Aug 17 00:27:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1900|consensus 100.0 6E-32 1.3E-36 247.0 9.3 109 2-110 190-298 (1311)
2 COG5308 NUP170 Nuclear pore co 99.9 4E-25 8.7E-30 198.3 6.1 104 2-108 193-297 (1263)
3 PF08801 Nucleoporin_N: Nup133 99.7 3.6E-18 7.7E-23 140.3 7.8 83 2-92 142-227 (422)
4 PF00400 WD40: WD domain, G-be 93.9 0.31 6.7E-06 26.5 5.3 31 52-82 9-39 (39)
5 PF11715 Nup160: Nucleoporin N 92.1 0.38 8.3E-06 41.0 5.7 78 4-86 161-250 (547)
6 cd00200 WD40 WD40 domain, foun 91.5 0.66 1.4E-05 32.5 5.6 30 53-82 260-289 (289)
7 KOG0646|consensus 90.9 1.1 2.4E-05 39.2 7.4 35 52-86 172-208 (476)
8 PF00780 CNH: CNH domain; Int 90.0 1.6 3.4E-05 33.3 6.8 29 56-85 37-65 (275)
9 cd00200 WD40 WD40 domain, foun 88.7 2.8 6.1E-05 29.3 6.8 31 54-84 93-123 (289)
10 KOG0646|consensus 88.5 1.8 3.9E-05 37.9 6.8 78 3-86 231-309 (476)
11 smart00320 WD40 WD40 repeats. 85.4 2.7 5.9E-05 19.9 4.0 30 53-82 11-40 (40)
12 PF13570 PQQ_3: PQQ-like domai 84.6 1.1 2.3E-05 25.3 2.4 16 2-17 22-37 (40)
13 PF10282 Lactonase: Lactonase, 84.1 3.1 6.8E-05 33.5 5.7 74 4-97 2-83 (345)
14 KOG0649|consensus 83.4 6.6 0.00014 32.6 7.3 61 2-85 127-187 (325)
15 KOG1272|consensus 82.8 1.9 4.2E-05 38.1 4.2 52 33-84 269-323 (545)
16 KOG0308|consensus 78.6 3.2 6.9E-05 38.0 4.3 35 52-86 211-245 (735)
17 PRK11028 6-phosphogluconolacto 77.7 8.6 0.00019 30.1 6.1 40 57-96 177-217 (330)
18 KOG0278|consensus 75.0 13 0.00029 30.9 6.7 61 4-87 238-300 (334)
19 KOG3611|consensus 72.6 13 0.00027 34.4 6.5 30 51-80 460-489 (737)
20 KOG0319|consensus 72.6 8.2 0.00018 35.7 5.3 41 43-86 54-94 (775)
21 KOG0296|consensus 70.5 14 0.0003 31.8 5.9 21 66-86 202-222 (399)
22 COG4590 ABC-type uncharacteriz 70.4 3.7 8E-05 36.9 2.6 52 54-106 220-271 (733)
23 PF07938 Fungal_lectin: Fungal 68.6 3.9 8.5E-05 33.8 2.3 24 3-26 175-198 (311)
24 PF01011 PQQ: PQQ enzyme repea 67.2 6.8 0.00015 21.9 2.5 18 2-19 1-18 (38)
25 PF10282 Lactonase: Lactonase, 67.2 21 0.00046 28.7 6.2 44 54-97 191-235 (345)
26 COG5603 TRS20 Subunit of TRAPP 66.5 3.2 6.9E-05 30.6 1.2 33 1-33 1-36 (136)
27 PF02333 Phytase: Phytase; In 65.2 43 0.00093 28.7 7.8 43 54-96 207-250 (381)
28 PRK11028 6-phosphogluconolacto 63.1 26 0.00057 27.3 5.9 39 59-97 232-271 (330)
29 PF12894 Apc4_WD40: Anaphase-p 61.2 29 0.00063 20.8 4.6 30 54-83 11-40 (47)
30 KOG0308|consensus 60.8 7.6 0.00016 35.7 2.7 59 4-85 270-328 (735)
31 PTZ00421 coronin; Provisional 58.6 24 0.00051 30.6 5.3 36 52-87 73-109 (493)
32 KOG0294|consensus 54.5 31 0.00068 29.4 5.2 46 52-97 247-295 (362)
33 KOG2110|consensus 54.0 49 0.0011 28.6 6.3 33 53-85 172-205 (391)
34 KOG0285|consensus 53.6 26 0.00057 30.5 4.7 105 2-114 290-419 (460)
35 KOG4460|consensus 52.7 49 0.0011 30.3 6.3 77 4-86 118-200 (741)
36 KOG0266|consensus 51.6 31 0.00067 29.1 4.8 35 52-86 286-320 (456)
37 PTZ00421 coronin; Provisional 50.5 1.1E+02 0.0024 26.5 8.2 34 52-85 123-157 (493)
38 COG2706 3-carboxymuconate cycl 50.4 46 0.001 28.3 5.6 44 54-97 190-234 (346)
39 KOG0315|consensus 48.9 82 0.0018 26.3 6.6 73 9-86 39-115 (311)
40 COG3204 Uncharacterized protei 48.2 66 0.0014 27.1 6.1 80 12-93 44-123 (316)
41 PF15492 Nbas_N: Neuroblastoma 47.7 41 0.00089 27.8 4.8 34 52-85 227-260 (282)
42 KOG0313|consensus 47.3 40 0.00087 29.3 4.8 35 52-87 258-292 (423)
43 smart00564 PQQ beta-propeller 46.6 26 0.00056 18.2 2.4 18 2-19 7-24 (33)
44 KOG0315|consensus 46.5 37 0.0008 28.3 4.3 35 52-86 122-156 (311)
45 KOG1408|consensus 46.1 96 0.0021 29.6 7.3 80 2-85 584-672 (1080)
46 KOG0274|consensus 46.0 22 0.00047 31.4 3.1 34 52-86 369-402 (537)
47 KOG0643|consensus 44.8 30 0.00064 29.1 3.5 32 52-83 8-39 (327)
48 PTZ00420 coronin; Provisional 44.3 54 0.0012 29.3 5.3 36 52-87 72-108 (568)
49 KOG1332|consensus 43.7 20 0.00044 29.7 2.4 44 52-96 9-52 (299)
50 KOG1539|consensus 43.4 41 0.0009 31.8 4.6 35 52-86 574-608 (910)
51 KOG2096|consensus 43.2 76 0.0016 27.4 5.8 63 2-84 240-308 (420)
52 KOG0291|consensus 42.8 1.4E+02 0.003 28.4 7.7 70 12-84 147-219 (893)
53 KOG0319|consensus 42.8 56 0.0012 30.5 5.2 32 53-84 104-135 (775)
54 KOG0291|consensus 40.4 43 0.00093 31.6 4.2 33 52-84 476-508 (893)
55 PF08450 SGL: SMP-30/Gluconola 40.0 1.4E+02 0.0029 22.3 6.3 30 59-88 138-168 (246)
56 KOG4649|consensus 39.8 23 0.00049 29.8 2.2 30 2-31 106-135 (354)
57 KOG0271|consensus 38.0 1.3E+02 0.0028 26.5 6.5 61 12-86 87-147 (480)
58 PF01731 Arylesterase: Arylest 37.9 73 0.0016 21.5 4.1 27 59-85 58-85 (86)
59 KOG0289|consensus 37.5 97 0.0021 27.6 5.7 35 52-86 387-421 (506)
60 KOG0286|consensus 37.2 1.1E+02 0.0024 25.9 5.8 74 7-86 183-261 (343)
61 PF14783 BBS2_Mid: Ciliary BBS 37.2 77 0.0017 22.6 4.3 32 52-84 40-71 (111)
62 PF08168 NUC205: NUC205 domain 37.0 18 0.00039 22.1 0.9 9 8-16 23-31 (44)
63 PF01436 NHL: NHL repeat; Int 36.5 67 0.0015 16.8 4.1 24 58-81 5-28 (28)
64 KOG0273|consensus 36.2 71 0.0015 28.5 4.7 35 52-86 357-391 (524)
65 KOG1912|consensus 36.0 22 0.00047 33.8 1.6 36 55-90 275-310 (1062)
66 KOG1274|consensus 36.0 61 0.0013 30.9 4.5 33 52-84 136-168 (933)
67 KOG0973|consensus 35.9 89 0.0019 30.0 5.6 34 52-85 169-202 (942)
68 KOG0649|consensus 35.9 1E+02 0.0022 25.8 5.3 62 23-86 85-146 (325)
69 PHA02358 hypothetical protein 35.6 28 0.0006 27.1 1.9 15 6-22 48-62 (194)
70 KOG0642|consensus 35.5 69 0.0015 29.0 4.6 37 52-88 342-378 (577)
71 KOG0294|consensus 35.0 59 0.0013 27.7 3.9 71 3-86 3-73 (362)
72 KOG0306|consensus 34.9 52 0.0011 31.0 3.8 33 54-86 180-221 (888)
73 KOG2063|consensus 34.9 37 0.0008 32.1 2.9 70 2-84 27-96 (877)
74 KOG1188|consensus 34.6 38 0.00082 29.1 2.7 32 52-83 314-345 (376)
75 KOG0279|consensus 34.5 1E+02 0.0023 25.8 5.2 36 52-87 13-49 (315)
76 KOG0321|consensus 33.4 92 0.002 28.9 5.1 82 4-86 159-250 (720)
77 TIGR03300 assembly_YfgL outer 33.1 1.3E+02 0.0028 24.0 5.5 18 67-84 321-338 (377)
78 KOG0642|consensus 32.8 1.1E+02 0.0023 27.9 5.3 34 52-85 394-427 (577)
79 smart00036 CNH Domain found in 32.7 79 0.0017 25.3 4.2 32 53-84 41-73 (302)
80 PF00379 Chitin_bind_4: Insect 32.5 74 0.0016 18.9 3.2 21 2-22 29-49 (52)
81 KOG0301|consensus 32.5 1.1E+02 0.0025 28.4 5.5 33 53-85 138-170 (745)
82 PF13459 Fer4_15: 4Fe-4S singl 32.4 49 0.0011 20.4 2.4 51 61-111 2-60 (65)
83 PRK11138 outer membrane biogen 31.8 1.1E+02 0.0023 24.9 4.9 17 67-83 377-393 (394)
84 KOG1409|consensus 31.7 46 0.00099 28.8 2.8 32 54-85 364-395 (404)
85 KOG2096|consensus 31.6 98 0.0021 26.7 4.7 33 52-84 84-116 (420)
86 PF07569 Hira: TUP1-like enhan 31.2 84 0.0018 24.2 4.0 39 41-86 4-42 (219)
87 COG2706 3-carboxymuconate cycl 31.0 91 0.002 26.6 4.4 38 57-94 293-331 (346)
88 KOG1539|consensus 30.8 1.5E+02 0.0032 28.3 6.1 55 52-106 491-553 (910)
89 KOG1188|consensus 30.4 85 0.0018 27.0 4.2 33 57-89 75-107 (376)
90 TIGR03866 PQQ_ABC_repeats PQQ- 30.4 1.1E+02 0.0024 22.2 4.4 31 55-85 249-280 (300)
91 PF01868 UPF0086: Domain of un 30.2 66 0.0014 21.6 2.9 22 55-76 28-49 (89)
92 PF06449 DUF1082: Mitochondria 30.1 33 0.00071 21.4 1.3 12 65-76 25-36 (51)
93 KOG0296|consensus 30.0 1.3E+02 0.0028 26.1 5.2 33 52-85 325-357 (399)
94 PF10168 Nup88: Nuclear pore c 29.8 3.2E+02 0.0069 25.3 8.0 84 6-97 101-191 (717)
95 PF14517 Tachylectin: Tachylec 29.1 1.1E+02 0.0024 24.4 4.5 66 1-78 36-103 (229)
96 PF06433 Me-amine-dh_H: Methyl 28.9 1.1E+02 0.0023 26.0 4.5 41 56-97 290-332 (342)
97 TIGR03866 PQQ_ABC_repeats PQQ- 28.8 1.5E+02 0.0033 21.5 4.9 30 56-85 74-104 (300)
98 cd01242 PH_ROK Rok (Rho- assoc 28.6 73 0.0016 23.0 3.0 45 60-108 25-73 (112)
99 KOG0272|consensus 28.4 80 0.0017 27.8 3.7 35 52-86 343-377 (459)
100 PF03022 MRJP: Major royal jel 27.7 1E+02 0.0022 24.7 4.1 31 55-85 186-216 (287)
101 TIGR02658 TTQ_MADH_Hv methylam 26.6 2E+02 0.0044 24.1 5.8 32 54-85 298-331 (352)
102 KOG0640|consensus 25.9 1E+02 0.0022 26.6 3.8 32 52-83 259-290 (430)
103 smart00051 DSL delta serrate l 25.8 72 0.0016 20.2 2.4 19 17-35 18-36 (63)
104 smart00743 Agenet Tudor-like d 24.9 51 0.0011 19.8 1.5 25 10-34 5-29 (61)
105 smart00135 LY Low-density lipo 24.9 1.2E+02 0.0026 15.9 4.3 30 55-84 9-39 (43)
106 PLN00181 protein SPA1-RELATED; 24.6 1.4E+02 0.003 26.9 4.7 30 54-83 763-792 (793)
107 KOG0292|consensus 24.6 1E+02 0.0022 29.9 3.9 34 53-86 249-282 (1202)
108 KOG0641|consensus 24.5 1.3E+02 0.0027 25.1 4.0 32 53-84 230-261 (350)
109 PF14727 PHTB1_N: PTHB1 N-term 24.3 2E+02 0.0043 24.8 5.4 52 61-112 337-392 (418)
110 PF08450 SGL: SMP-30/Gluconola 24.3 2.1E+02 0.0045 21.3 5.0 36 56-93 185-220 (246)
111 TIGR00053 addiction module tox 24.2 1.3E+02 0.0029 19.3 3.5 34 53-87 53-86 (89)
112 PHA02851 EEV glycoprotein; Pro 23.6 68 0.0015 25.0 2.2 31 55-85 148-179 (223)
113 PLN00181 protein SPA1-RELATED; 23.6 1.6E+02 0.0035 26.5 4.9 32 53-84 482-513 (793)
114 PF07938 Fungal_lectin: Fungal 23.3 86 0.0019 26.0 2.9 24 3-26 68-91 (311)
115 KOG0284|consensus 23.2 1.5E+02 0.0032 26.2 4.4 33 52-84 262-294 (464)
116 PF10395 Utp8: Utp8 family; I 23.1 1.4E+02 0.003 27.7 4.4 31 53-83 128-158 (670)
117 KOG1408|consensus 23.1 1.2E+02 0.0026 28.9 4.0 33 53-85 595-627 (1080)
118 KOG1240|consensus 23.0 49 0.0011 32.8 1.6 56 55-110 1049-1108(1431)
119 KOG0322|consensus 22.9 1.1E+02 0.0024 25.7 3.5 32 53-84 250-281 (323)
120 KOG1332|consensus 22.7 1E+02 0.0022 25.7 3.1 33 4-37 119-151 (299)
121 KOG0275|consensus 22.6 68 0.0015 27.9 2.2 29 54-82 479-507 (508)
122 KOG2919|consensus 22.4 1.3E+02 0.0028 26.0 3.8 80 6-88 246-331 (406)
123 KOG0266|consensus 22.1 2.6E+02 0.0056 23.6 5.6 34 52-85 244-277 (456)
124 KOG0285|consensus 21.8 1.7E+02 0.0037 25.6 4.5 35 52-86 275-309 (460)
125 PF08954 DUF1900: Domain of un 21.8 3.2E+02 0.007 19.8 6.3 44 54-97 10-54 (136)
126 PF06977 SdiA-regulated: SdiA- 21.0 2.7E+02 0.0059 22.1 5.3 39 54-93 21-59 (248)
127 KOG0263|consensus 20.6 6.8E+02 0.015 23.5 8.2 76 3-83 571-648 (707)
128 PF12657 TFIIIC_delta: Transcr 20.6 2.3E+02 0.005 20.6 4.5 42 56-97 87-135 (173)
129 COG0688 Psd Phosphatidylserine 20.0 2.5E+02 0.0055 22.3 4.9 70 2-84 81-177 (239)
No 1
>KOG1900|consensus
Probab=99.97 E-value=6e-32 Score=246.96 Aligned_cols=109 Identities=42% Similarity=0.722 Sum_probs=103.2
Q ss_pred ceEEEecCCCCEEEEEEecCCCccccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEE
Q psy7671 2 IVVFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVY 81 (115)
Q Consensus 2 GRIF~gG~DG~lyEl~Y~~~~~Wf~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy 81 (115)
|||||||+|||||||.||.++|||++||+|||||+|.+++++|++++..++++|+|.||+||++|++||+|+++|+|++|
T Consensus 190 GRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y 269 (1311)
T KOG1900|consen 190 GRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAY 269 (1311)
T ss_pred CcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEE
Confidence 99999999999999999999999999999999999999999999887533678999999999999999999999999999
Q ss_pred EecCCCCceeeEEEecHHHHHHHHHhhhh
Q psy7671 82 DLYERGQGFRSLVSLSEEMIVQQALKFHI 110 (115)
Q Consensus 82 ~Lg~~g~~~~~v~s~s~~~i~~~a~~~~~ 110 (115)
++|++|....+..++++..|..+|+..-.
T Consensus 270 ~i~~~G~~~~r~~~~~~~~i~~qa~~~~~ 298 (1311)
T KOG1900|consen 270 DIGGNGLGGPRFVSVSRNYIDVQALSLKN 298 (1311)
T ss_pred EccCCCccceeeeehhHHHHHHHhhhccc
Confidence 99999999999999999999999987654
No 2
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=99.91 E-value=4e-25 Score=198.25 Aligned_cols=104 Identities=32% Similarity=0.619 Sum_probs=95.0
Q ss_pred ceEEEecCCC-CEEEEEEecCCCccccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEE
Q psy7671 2 IVVFMGGTDG-NLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISV 80 (115)
Q Consensus 2 GRIF~gG~DG-~lyEl~Y~~~~~Wf~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~v 80 (115)
|||||||+.+ |||||.|+.+|+||.+||.|||.|++.+++++|+++... -..|.|.|++||++|++||+|+++|+|+.
T Consensus 193 GrIFf~g~~d~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~-ipgetI~Ql~vDqsRg~ly~Lr~kS~Vra 271 (1263)
T COG5308 193 GRIFFGGENDPNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFG-IPGETIKQLAVDQSRGLLYVLRKKSAVRA 271 (1263)
T ss_pred CcEEEecCCCCCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccC-Ccccchhheeecccccceeeecccceeee
Confidence 9999999666 999999999999999999999999999999999987742 35689999999999999999999999999
Q ss_pred EEecCCCCceeeEEEecHHHHHHHHHhh
Q psy7671 81 YDLYERGQGFRSLVSLSEEMIVQQALKF 108 (115)
Q Consensus 81 y~Lg~~g~~~~~v~s~s~~~i~~~a~~~ 108 (115)
|.++++| +.....++.+.|-|.|...
T Consensus 272 y~itkng--l~gpv~i~~a~i~r~a~~l 297 (1263)
T COG5308 272 YSITKNG--LVGPVFISFASIDRNAAIL 297 (1263)
T ss_pred Eeeeccc--ccccccccHHHHHhHHhhh
Confidence 9999884 7788899999999988643
No 3
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=99.74 E-value=3.6e-18 Score=140.35 Aligned_cols=83 Identities=36% Similarity=0.560 Sum_probs=42.9
Q ss_pred ceEEEecCCC--CEEEEEEecCCCccccccceEEecCCcc-cccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeE
Q psy7671 2 IVVFMGGTDG--NLYEIKYQRDASWFSASCSKVCLTSSSL-TYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLI 78 (115)
Q Consensus 2 GRIF~gG~DG--~lyEl~Y~~~~~Wf~~kc~kinhT~~~~-ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I 78 (115)
||||++|.++ ++|||.|+..++ +|+|+||+++++ ++++|++. ..++.|+||++|++|++||+|+++|+|
T Consensus 142 GRif~~~~~~~~g~~~l~y~~~~~----~~~~i~~~~~~~~~~~~p~~~----~~~~~I~~v~~d~~r~~ly~l~~~~~I 213 (422)
T PF08801_consen 142 GRIFFLGIRDSNGKYELSYQQLSG----RCSKINHTSSSIFSSLLPSFS----DPRPKIVQVAVDPSRRLLYTLTSDGSI 213 (422)
T ss_dssp --EEEEEE-TTS-EEEEE-TT-------------------------------------EEEEEEETTTTEEEEEESSE-E
T ss_pred CeEEEEeCCCCCCcEEEEEEcCcC----CccccccccCceeccccCCcc----cchhceeeEEecCCcCEEEEEeCCCcE
Confidence 8999999666 999999988887 999999999887 88888711 224459999999999999999999999
Q ss_pred EEEEecCCCCceee
Q psy7671 79 SVYDLYERGQGFRS 92 (115)
Q Consensus 79 ~vy~Lg~~g~~~~~ 92 (115)
++|+|+.+|..+..
T Consensus 214 q~w~l~~~~~~~~~ 227 (422)
T PF08801_consen 214 QVWDLGPGGSTLVS 227 (422)
T ss_dssp EEEEE-SS-EEEEE
T ss_pred EEEEEeCCCCceee
Confidence 99999996544544
No 4
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=93.87 E-value=0.31 Score=26.48 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=29.1
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEE
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYD 82 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~ 82 (115)
..+++|..|.+.+..+.|.|=+.+++|++|+
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4578999999999999999999999999997
No 5
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.06 E-value=0.38 Score=41.01 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=41.4
Q ss_pred EEEecCCCCEEEEEEec----CCCccccccceEEecCC----cccccchhhhhhhccCCCceeEEEEeC----CCceEEE
Q psy7671 4 VFMGGTDGNLYEIKYQR----DASWFSASCSKVCLTSS----SLTYILPTFINALITQEDSLAQICIDN----SRNVLYT 71 (115)
Q Consensus 4 IF~gG~DG~lyEl~Y~~----~~~Wf~~kc~kinhT~~----~~ssllPs~~~~~~~~~~~I~qi~vD~----sR~lLYt 71 (115)
++.+.+||-|.-|.-.. ...|- ..-...+ .++.++|...............+.++. .+.+|+|
T Consensus 161 l~v~~~dG~ll~l~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 161 LVVSLQDGGLLRLKRSSGDSDGSVWS-----EELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp EEEEESSS-EEEEEES----SSS-EE---------STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred EEEEECCCCeEEEECCcccCCCCeeE-----EEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 45666888888888764 23342 1111221 233444433111112345566677777 8899999
Q ss_pred ecCCCeEEEEEecCC
Q psy7671 72 RSELGLISVYDLYER 86 (115)
Q Consensus 72 Ls~~s~I~vy~Lg~~ 86 (115)
|+.++++++|++...
T Consensus 236 l~~D~~LRiW~l~t~ 250 (547)
T PF11715_consen 236 LSRDHTLRIWSLETG 250 (547)
T ss_dssp EETTSEEEEEETTTT
T ss_pred EeCCCeEEEEECCCC
Confidence 999999999999655
No 6
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=91.52 E-value=0.66 Score=32.52 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCCceeEEEEeCCCceEEEecCCCeEEEEE
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELGLISVYD 82 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~ 82 (115)
...+|..+.+++..+.|++-+.++.|.+|+
T Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 356899999999999999999999999995
No 7
>KOG0646|consensus
Probab=90.92 E-value=1.1 Score=39.15 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=30.4
Q ss_pred cCCCceeEEEEeCC--CceEEEecCCCeEEEEEecCC
Q psy7671 52 TQEDSLAQICIDNS--RNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 52 ~~~~~I~qi~vD~s--R~lLYtLs~~s~I~vy~Lg~~ 86 (115)
...=+|.+|.|+.. +..|||-|++.+|++|+|..+
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 45668999999985 899999999999999999754
No 8
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=89.98 E-value=1.6 Score=33.31 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=26.7
Q ss_pred ceeEEEEeCCCceEEEecCCCeEEEEEecC
Q psy7671 56 SLAQICIDNSRNVLYTRSELGLISVYDLYE 85 (115)
Q Consensus 56 ~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~ 85 (115)
+|.||.+=++-++|-.|+. +.+.+|+|..
T Consensus 37 ~I~ql~vl~~~~~llvLsd-~~l~~~~L~~ 65 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLSD-GQLYVYDLDS 65 (275)
T ss_pred eEEEEEEecccCEEEEEcC-CccEEEEchh
Confidence 3999999999999999998 9999999974
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=88.65 E-value=2.8 Score=29.30 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=27.7
Q ss_pred CCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 54 EDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 54 ~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
.++|..+..++..+++++-+.++.|.+|++.
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 4589999999998999998889999999996
No 10
>KOG0646|consensus
Probab=88.54 E-value=1.8 Score=37.93 Aligned_cols=78 Identities=19% Similarity=0.399 Sum_probs=53.8
Q ss_pred eEEEecCCCCEEEEEEecCCCcccccc-ceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEE
Q psy7671 3 VVFMGGTDGNLYEIKYQRDASWFSASC-SKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVY 81 (115)
Q Consensus 3 RIF~gG~DG~lyEl~Y~~~~~Wf~~kc-~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy 81 (115)
|+|.|+.||+||-..|.+-.| ++.-. .|.-|-.+-- +|.|.+. ..+.+|.-++|--...+|-.=+++|.+.||
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~-~~~~v~~k~~~~~~t~---~~~~~Gh--~~~~~ITcLais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSG-QSAGVNQKGRHEENTQ---INVLVGH--ENESAITCLAISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred EEEecCCcceEEeeehhcCCc-ccccccccccccccce---eeeeccc--cCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence 456666999999999986665 23211 1222222211 2334432 334599999999999999999999999999
Q ss_pred EecCC
Q psy7671 82 DLYER 86 (115)
Q Consensus 82 ~Lg~~ 86 (115)
|+.+.
T Consensus 305 di~S~ 309 (476)
T KOG0646|consen 305 DIYSK 309 (476)
T ss_pred ecchH
Confidence 99865
No 11
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=85.44 E-value=2.7 Score=19.92 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=25.4
Q ss_pred CCCceeEEEEeCCCceEEEecCCCeEEEEE
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELGLISVYD 82 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~ 82 (115)
..+.|..+..++.-+.+.+=+.++.|++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356788899888878999999999999985
No 12
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=84.57 E-value=1.1 Score=25.33 Aligned_cols=16 Identities=44% Similarity=0.796 Sum_probs=13.3
Q ss_pred ceEEEecCCCCEEEEE
Q psy7671 2 IVVFMGGTDGNLYEIK 17 (115)
Q Consensus 2 GRIF~gG~DG~lyEl~ 17 (115)
|++|.++.||+||-|.
T Consensus 22 g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 22 GRVYVGTGDGNLYALD 37 (40)
T ss_dssp SEEEEE-TTSEEEEEE
T ss_pred CEEEEEcCCCEEEEEe
Confidence 7899999999999875
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.07 E-value=3.1 Score=33.49 Aligned_cols=74 Identities=16% Similarity=0.348 Sum_probs=46.8
Q ss_pred EEEec-CC---CCEEEEEEecCCCccccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecC----C
Q psy7671 4 VFMGG-TD---GNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSE----L 75 (115)
Q Consensus 4 IF~gG-~D---G~lyEl~Y~~~~~Wf~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~----~ 75 (115)
+|.|+ .+ +.||-+.+..+.|=+... ... ...+.-.-|++|+.++.||+.++ +
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~----~~~----------------~~~~~Ps~l~~~~~~~~LY~~~e~~~~~ 61 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLV----QTV----------------AEGENPSWLAVSPDGRRLYVVNEGSGDS 61 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEE----EEE----------------EESSSECCEEE-TTSSEEEEEETTSSTT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEe----eee----------------cCCCCCceEEEEeCCCEEEEEEccccCC
Confidence 56776 33 689999886555432221 110 11223334567999999999998 4
Q ss_pred CeEEEEEecCCCCceeeEEEec
Q psy7671 76 GLISVYDLYERGQGFRSLVSLS 97 (115)
Q Consensus 76 s~I~vy~Lg~~g~~~~~v~s~s 97 (115)
+.|.+|++..+...++.+.+..
T Consensus 62 g~v~~~~i~~~~g~L~~~~~~~ 83 (345)
T PF10282_consen 62 GGVSSYRIDPDTGTLTLLNSVP 83 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEECCCcceeEEeeeec
Confidence 6999999998844666665543
No 14
>KOG0649|consensus
Probab=83.36 E-value=6.6 Score=32.61 Aligned_cols=61 Identities=16% Similarity=0.343 Sum_probs=39.2
Q ss_pred ceEEEecCCCCEEEEEEecCCCccccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEE
Q psy7671 2 IVVFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVY 81 (115)
Q Consensus 2 GRIF~gG~DG~lyEl~Y~~~~~Wf~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy 81 (115)
+-||++|.||++|-..-. +| |..+.- . +..|=|-.++--++-.-+.+=+++|++++|
T Consensus 127 nSi~~AgGD~~~y~~dlE--~G----~i~r~~--------------r---GHtDYvH~vv~R~~~~qilsG~EDGtvRvW 183 (325)
T KOG0649|consen 127 NSILFAGGDGVIYQVDLE--DG----RIQREY--------------R---GHTDYVHSVVGRNANGQILSGAEDGTVRVW 183 (325)
T ss_pred CcEEEecCCeEEEEEEec--CC----EEEEEE--------------c---CCcceeeeeeecccCcceeecCCCccEEEE
Confidence 568999999999987765 33 333222 1 233444444444444556677889999999
Q ss_pred EecC
Q psy7671 82 DLYE 85 (115)
Q Consensus 82 ~Lg~ 85 (115)
|+..
T Consensus 184 d~kt 187 (325)
T KOG0649|consen 184 DTKT 187 (325)
T ss_pred eccc
Confidence 9953
No 15
>KOG1272|consensus
Probab=82.75 E-value=1.9 Score=38.12 Aligned_cols=52 Identities=12% Similarity=0.242 Sum_probs=42.8
Q ss_pred EecCCcccccchhh---hhhhccCCCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 33 CLTSSSLTYILPTF---INALITQEDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 33 nhT~~~~ssllPs~---~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
-|+.|.+|.|=|+. +...+....++..|+||+..+.+-|=..+..+.+|||.
T Consensus 269 GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred cCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeec
Confidence 36667788888872 22235678999999999999999999999999999996
No 16
>KOG0308|consensus
Probab=78.56 E-value=3.2 Score=38.02 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=31.5
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
+..|.|.-+.+++...-+-+=|++++|++|+||.-
T Consensus 211 GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 211 GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred ccccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 46789999999999999999999999999999853
No 17
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=77.73 E-value=8.6 Score=30.09 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=31.3
Q ss_pred eeEEEEeCCCceEEEecC-CCeEEEEEecCCCCceeeEEEe
Q psy7671 57 LAQICIDNSRNVLYTRSE-LGLISVYDLYERGQGFRSLVSL 96 (115)
Q Consensus 57 I~qi~vD~sR~lLYtLs~-~s~I~vy~Lg~~g~~~~~v~s~ 96 (115)
...+++++..+.||+.++ .++|.+|++..++..++.+.++
T Consensus 177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 357899999999999998 8999999997643345555554
No 18
>KOG0278|consensus
Probab=75.05 E-value=13 Score=30.94 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=38.8
Q ss_pred EEEe-cCCCCEEEEEEecCCCccccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEE-ecCCCeEEEE
Q psy7671 4 VFMG-GTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYT-RSELGLISVY 81 (115)
Q Consensus 4 IF~g-G~DG~lyEl~Y~~~~~Wf~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYt-Ls~~s~I~vy 81 (115)
+|.+ |.|+-+|.+.|+..+.= .+|-+ +...||--+..-+. +.||+ =|++|+|++|
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi-------~~~nk---------------gh~gpVhcVrFSPd-GE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEI-------GSYNK---------------GHFGPVHCVRFSPD-GELYASGSEDGTIRLW 294 (334)
T ss_pred eEEecCcceEEEEEeccCCcee-------eeccc---------------CCCCceEEEEECCC-CceeeccCCCceEEEE
Confidence 6755 58999999999876532 11111 23444444444444 34554 5789999999
Q ss_pred EecCCC
Q psy7671 82 DLYERG 87 (115)
Q Consensus 82 ~Lg~~g 87 (115)
..++..
T Consensus 295 Qt~~~~ 300 (334)
T KOG0278|consen 295 QTTPGK 300 (334)
T ss_pred EecCCC
Confidence 998753
No 19
>KOG3611|consensus
Probab=72.59 E-value=13 Score=34.38 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=26.3
Q ss_pred ccCCCceeEEEEeCCCceEEEecCCCeEEE
Q psy7671 51 ITQEDSLAQICIDNSRNVLYTRSELGLISV 80 (115)
Q Consensus 51 ~~~~~~I~qi~vD~sR~lLYtLs~~s~I~v 80 (115)
|...++|..|.+|.+|+-||.=+..+.++|
T Consensus 460 f~~~~pI~~m~Ls~~~~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 460 FPDAEPIRSMQLSSKRGSLYVGSRSGVVQV 489 (737)
T ss_pred cCCCCceeEEEecccCCeEEEEccCcEEEe
Confidence 355689999999999999999999888775
No 20
>KOG0319|consensus
Probab=72.58 E-value=8.2 Score=35.75 Aligned_cols=41 Identities=29% Similarity=0.420 Sum_probs=35.2
Q ss_pred chhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 43 LPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 43 lPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
+|+.-. ..++.|..+.|++.++.||+.+...-+++|+|..+
T Consensus 54 l~s~~~---ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tg 94 (775)
T KOG0319|consen 54 LPSGSN---EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTG 94 (775)
T ss_pred cccCCc---cchhhhheeeecCCccEEEEeeccceEEEEEcccc
Confidence 665433 56789999999999999999999999999999754
No 21
>KOG0296|consensus
Probab=70.55 E-value=14 Score=31.84 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=17.6
Q ss_pred CceEEEecCCCeEEEEEecCC
Q psy7671 66 RNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 66 R~lLYtLs~~s~I~vy~Lg~~ 86 (115)
.+.+.|...+|+|++|++-..
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred CceEEEEecCceEEEEecCCC
Confidence 677888888999999998543
No 22
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=70.35 E-value=3.7 Score=36.86 Aligned_cols=52 Identities=23% Similarity=0.203 Sum_probs=44.4
Q ss_pred CCceeEEEEeCCCceEEEecCCCeEEEEEecCCCCceeeEEEecHHHHHHHHH
Q psy7671 54 EDSLAQICIDNSRNVLYTRSELGLISVYDLYERGQGFRSLVSLSEEMIVQQAL 106 (115)
Q Consensus 54 ~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~g~~~~~v~s~s~~~i~~~a~ 106 (115)
.+.+.|+-.|+..+.||.++. ++..||+|.+..-..+++++.++.+.+++..
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vt 271 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVT 271 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHH
Confidence 457889999999999999998 9999999987766678899998887777654
No 23
>PF07938 Fungal_lectin: Fungal fucose-specific lectin; InterPro: IPR012475 Lectins are involved in many recognition events at the molecular or cellular level. These fungal lectins, such as Aleuria aurantialectin (AAL, P18891 from SWISSPROT), specifically recognise fucosylated glycans. AAL is a dimeric protein, with each monomer being organised into a six-bladed beta-propeller fold and a small antiparallel two-stranded beta-sheet. The beta-propeller fold is important in fucose recognition; five binding pockets are found between the propeller blades. The small beta-sheet, on the other hand, is involved in the dimerisation process []. ; PDB: 1IUC_A 1OFZ_A 1IUB_A 2BS5_A 3ZWE_B 3ZW1_B 3ZZV_A 3ZW2_A 3ZW0_A 2BS6_C ....
Probab=68.63 E-value=3.9 Score=33.83 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred eEEEecCCCCEEEEEEecCCCccc
Q psy7671 3 VVFMGGTDGNLYEIKYQRDASWFS 26 (115)
Q Consensus 3 RIF~gG~DG~lyEl~Y~~~~~Wf~ 26 (115)
|||+-..|+.|.|..|.++.|||.
T Consensus 175 RVYyQ~~d~~I~e~~yd~~~gW~~ 198 (311)
T PF07938_consen 175 RVYYQADDLNIRERCYDSSKGWSW 198 (311)
T ss_dssp EEEEEEETTEEEEEEESSSS-EE-
T ss_pred EEEEECCCCCEEEEEEcCCCceee
Confidence 899999999999999998889984
No 24
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=67.23 E-value=6.8 Score=21.92 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=14.9
Q ss_pred ceEEEecCCCCEEEEEEe
Q psy7671 2 IVVFMGGTDGNLYEIKYQ 19 (115)
Q Consensus 2 GRIF~gG~DG~lyEl~Y~ 19 (115)
|+||.+..||.||-|.=.
T Consensus 1 ~~v~~~~~~g~l~AlD~~ 18 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAK 18 (38)
T ss_dssp TEEEEETTTSEEEEEETT
T ss_pred CEEEEeCCCCEEEEEECC
Confidence 789999989999887643
No 25
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=67.20 E-value=21 Score=28.70 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=32.8
Q ss_pred CCceeEEEEeCCCceEEEecCCC-eEEEEEecCCCCceeeEEEec
Q psy7671 54 EDSLAQICIDNSRNVLYTRSELG-LISVYDLYERGQGFRSLVSLS 97 (115)
Q Consensus 54 ~~~I~qi~vD~sR~lLYtLs~~s-~I~vy~Lg~~g~~~~~v~s~s 97 (115)
...=..|++++..+.+|...+.+ +|.+|++......++.+.+++
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 44567899999999999998854 899999995443666666554
No 26
>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]
Probab=66.53 E-value=3.2 Score=30.61 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=25.9
Q ss_pred CceEEEe-c-CCCCEEEEEEecC-CCccccccceEE
Q psy7671 1 MIVVFMG-G-TDGNLYEIKYQRD-ASWFSASCSKVC 33 (115)
Q Consensus 1 ~GRIF~g-G-~DG~lyEl~Y~~~-~~Wf~~kc~kin 33 (115)
||.-|.- | +|.-+||+.|..+ +.-+..-|+.+|
T Consensus 1 M~~y~aIIg~KdnpVYe~e~~~~n~~~d~~~~~~ln 36 (136)
T COG5603 1 MGEYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLN 36 (136)
T ss_pred CCceEEEEecCCCceeeeeecCcCcccCHHHHHHHh
Confidence 5666643 4 8999999999866 457788999987
No 27
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=65.17 E-value=43 Score=28.65 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=31.4
Q ss_pred CCceeEEEEeCCCceEEEecCCCeEEEEEecCCCCc-eeeEEEe
Q psy7671 54 EDSLAQICIDNSRNVLYTRSELGLISVYDLYERGQG-FRSLVSL 96 (115)
Q Consensus 54 ~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~g~~-~~~v~s~ 96 (115)
...++-+|+|++.+.||.=-|+--|-.|+..+++.. .+.+...
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~ 250 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA 250 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB
T ss_pred CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecc
Confidence 447999999999999999888888888888776543 3444443
No 28
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=63.13 E-value=26 Score=27.34 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=29.8
Q ss_pred EEEEeCCCceEEEecC-CCeEEEEEecCCCCceeeEEEec
Q psy7671 59 QICIDNSRNVLYTRSE-LGLISVYDLYERGQGFRSLVSLS 97 (115)
Q Consensus 59 qi~vD~sR~lLYtLs~-~s~I~vy~Lg~~g~~~~~v~s~s 97 (115)
.|.+++..+.||+-.+ .++|.+|++..++...+.+..+.
T Consensus 232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~ 271 (330)
T PRK11028 232 DIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP 271 (330)
T ss_pred eEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe
Confidence 4788899999999865 57999999988765555555443
No 29
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=61.24 E-value=29 Score=20.79 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=27.7
Q ss_pred CCceeEEEEeCCCceEEEecCCCeEEEEEe
Q psy7671 54 EDSLAQICIDNSRNVLYTRSELGLISVYDL 83 (115)
Q Consensus 54 ~~~I~qi~vD~sR~lLYtLs~~s~I~vy~L 83 (115)
..+|..+.--++-.+|-..+++|.|.+|++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 457889999999999999999999999999
No 30
>KOG0308|consensus
Probab=60.78 E-value=7.6 Score=35.67 Aligned_cols=59 Identities=20% Similarity=0.494 Sum_probs=38.8
Q ss_pred EEEecCCCCEEEEEEecCCCccccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEEEe
Q psy7671 4 VFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVYDL 83 (115)
Q Consensus 4 IF~gG~DG~lyEl~Y~~~~~Wf~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~L 83 (115)
++.||+||+||.=.-.+. .+|..|| .++.|+.++..++.-+-...=+.+|+|+-|.+
T Consensus 270 vYsG~rd~~i~~Tdl~n~-----~~~tlic------------------k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 270 VYSGGRDGNIYRTDLRNP-----AKSTLIC------------------KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred EEecCCCCcEEecccCCc-----hhheEee------------------cCCCchhhhhhccccCCceeeeccccceecCC
Confidence 566777777776554432 4555555 45667777777766666677778888888877
Q ss_pred cC
Q psy7671 84 YE 85 (115)
Q Consensus 84 g~ 85 (115)
.+
T Consensus 327 ~~ 328 (735)
T KOG0308|consen 327 EP 328 (735)
T ss_pred cc
Confidence 53
No 31
>PTZ00421 coronin; Provisional
Probab=58.59 E-value=24 Score=30.63 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=31.2
Q ss_pred cCCCceeEEEEeC-CCceEEEecCCCeEEEEEecCCC
Q psy7671 52 TQEDSLAQICIDN-SRNVLYTRSELGLISVYDLYERG 87 (115)
Q Consensus 52 ~~~~~I~qi~vD~-sR~lLYtLs~~s~I~vy~Lg~~g 87 (115)
+..++|..+..++ ..++|.|=+.+++|++|++..++
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~ 109 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEG 109 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCc
Confidence 4577899999998 67899999999999999997653
No 32
>KOG0294|consensus
Probab=54.46 E-value=31 Score=29.35 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=34.6
Q ss_pred cCCCceeEEE-E-eCCCceEEEecCCCeEEEEEecCCCC-ceeeEEEec
Q psy7671 52 TQEDSLAQIC-I-DNSRNVLYTRSELGLISVYDLYERGQ-GFRSLVSLS 97 (115)
Q Consensus 52 ~~~~~I~qi~-v-D~sR~lLYtLs~~s~I~vy~Lg~~g~-~~~~v~s~s 97 (115)
..+..|+.|+ + ++.-.+|-|-|++|.|.||++.-+.+ .++.++.++
T Consensus 247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n 295 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELN 295 (362)
T ss_pred cchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEee
Confidence 5678899998 4 44668999999999999999986533 345555544
No 33
>KOG2110|consensus
Probab=54.05 E-value=49 Score=28.58 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=29.6
Q ss_pred CCCceeEEEEeCCCceEEEecCCC-eEEEEEecC
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELG-LISVYDLYE 85 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s-~I~vy~Lg~ 85 (115)
.+.+|--|+++.+.++|-|=|++| .||||+...
T Consensus 172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~ 205 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE 205 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccCceEEEEEEcCC
Confidence 567899999999999999999999 589999954
No 34
>KOG0285|consensus
Probab=53.63 E-value=26 Score=30.47 Aligned_cols=105 Identities=17% Similarity=0.246 Sum_probs=64.8
Q ss_pred ceEEEecCCC--CEEEEEEecCCCccccccceEEecCCcc-----------ccc---------chh--hhhhhccCCCce
Q psy7671 2 IVVFMGGTDG--NLYEIKYQRDASWFSASCSKVCLTSSSL-----------TYI---------LPT--FINALITQEDSL 57 (115)
Q Consensus 2 GRIF~gG~DG--~lyEl~Y~~~~~Wf~~kc~kinhT~~~~-----------ssl---------lPs--~~~~~~~~~~~I 57 (115)
+.|..|+-|+ +||.+.|.. ..|...+|-.+.. .+- +|- |++. ++.+..|
T Consensus 290 pqvit~S~D~tvrlWDl~agk------t~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n-lsgh~~i 362 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGK------TMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN-LSGHNAI 362 (460)
T ss_pred CceEEecCCceEEEeeeccCc------eeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc-cccccce
Confidence 3566777777 788888763 3344444443221 111 221 4443 3455556
Q ss_pred eEEEEeCCCceEEEecCCCeEEEEEecCCCCceeeEE-EecHHHHHHHHHhhhhhhhc
Q psy7671 58 AQICIDNSRNVLYTRSELGLISVYDLYERGQGFRSLV-SLSEEMIVQQALKFHIVYAK 114 (115)
Q Consensus 58 ~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~g~~~~~v~-s~s~~~i~~~a~~~~~~~~~ 114 (115)
+--.-=++.+.|.+=+++++|-.||-.+.- .+++.. -+-|..+..+|.-.+-.|||
T Consensus 363 intl~~nsD~v~~~G~dng~~~fwdwksg~-nyQ~~~t~vqpGSl~sEagI~as~fDk 419 (460)
T KOG0285|consen 363 INTLSVNSDGVLVSGGDNGSIMFWDWKSGH-NYQRGQTIVQPGSLESEAGIFASCFDK 419 (460)
T ss_pred eeeeeeccCceEEEcCCceEEEEEecCcCc-ccccccccccCCccccccceeEEeecc
Confidence 555555788999999999999999986542 444443 34456777777777777765
No 35
>KOG4460|consensus
Probab=52.75 E-value=49 Score=30.33 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=43.6
Q ss_pred EEEecCCC-CEEEEEEe-cCCCcc-ccccceEEecCCcccccchhhhhhhccCCCceeEEEEeC---CCceEEEecCCCe
Q psy7671 4 VFMGGTDG-NLYEIKYQ-RDASWF-SASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDN---SRNVLYTRSELGL 77 (115)
Q Consensus 4 IF~gG~DG-~lyEl~Y~-~~~~Wf-~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~---sR~lLYtLs~~s~ 77 (115)
+-+.|.|| +|-||--. ..+|-| -+|---+|.|.+.-+-+.-+ +..=.+.|..--+ ...-|-.|+++++
T Consensus 118 VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts------s~~ltl~Qa~WHP~S~~D~hL~iL~sdnv 191 (741)
T KOG4460|consen 118 VALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS------STSLTLKQAAWHPSSILDPHLVLLTSDNV 191 (741)
T ss_pred EEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc------CCceeeeeccccCCccCCceEEEEecCcE
Confidence 45778999 99998321 123334 35556677877654332211 1111222322211 1345677899999
Q ss_pred EEEEEecCC
Q psy7671 78 ISVYDLYER 86 (115)
Q Consensus 78 I~vy~Lg~~ 86 (115)
|++|++.++
T Consensus 192 iRiy~lS~~ 200 (741)
T KOG4460|consen 192 IRIYSLSEP 200 (741)
T ss_pred EEEEecCCc
Confidence 999999754
No 36
>KOG0266|consensus
Probab=51.57 E-value=31 Score=29.11 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=31.9
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
...++|.-+......+.|.+-+.++.|++||+...
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 46779999999999999999999999999999754
No 37
>PTZ00421 coronin; Provisional
Probab=50.51 E-value=1.1e+02 Score=26.50 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=28.9
Q ss_pred cCCCceeEEEEeCC-CceEEEecCCCeEEEEEecC
Q psy7671 52 TQEDSLAQICIDNS-RNVLYTRSELGLISVYDLYE 85 (115)
Q Consensus 52 ~~~~~I~qi~vD~s-R~lLYtLs~~s~I~vy~Lg~ 85 (115)
+...+|..+...+. .++|.+=+.+++|++||+..
T Consensus 123 gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t 157 (493)
T PTZ00421 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER 157 (493)
T ss_pred CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence 35678899999886 47999999999999999964
No 38
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=50.41 E-value=46 Score=28.27 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=36.3
Q ss_pred CCceeEEEEeCCCceEEEecC-CCeEEEEEecCCCCceeeEEEec
Q psy7671 54 EDSLAQICIDNSRNVLYTRSE-LGLISVYDLYERGQGFRSLVSLS 97 (115)
Q Consensus 54 ~~~I~qi~vD~sR~lLYtLs~-~s~I~vy~Lg~~g~~~~~v~s~s 97 (115)
...=..|+.-+...+.|..+| +|+|.||.....+..+..+.+++
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~ 234 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID 234 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec
Confidence 445678999999999999999 88999999988766777776654
No 39
>KOG0315|consensus
Probab=48.88 E-value=82 Score=26.28 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=46.2
Q ss_pred CCCCEEEEEEecCCCcc----ccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 9 TDGNLYEIKYQRDASWF----SASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 9 ~DG~lyEl~Y~~~~~Wf----~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
.|+.+-.|+-..+.+-+ ..+.|.-...++.-. | ..++=+..+.|..+-.-...+-+||=+++|++++|||.
T Consensus 39 ~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~---P--v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR 113 (311)
T KOG0315|consen 39 PDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN---P--VATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR 113 (311)
T ss_pred CccceeeEEEcCCcchhhhccCCeeEEEEccCCCCC---c--eeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence 45666666666554433 244455444443211 1 11111335678888888999999999999999999997
Q ss_pred CC
Q psy7671 85 ER 86 (115)
Q Consensus 85 ~~ 86 (115)
..
T Consensus 114 ~~ 115 (311)
T KOG0315|consen 114 SL 115 (311)
T ss_pred Cc
Confidence 63
No 40
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.20 E-value=66 Score=27.08 Aligned_cols=80 Identities=10% Similarity=0.192 Sum_probs=51.5
Q ss_pred CEEEEEEecCCCccccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEEEecCCCCcee
Q psy7671 12 NLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVYDLYERGQGFR 91 (115)
Q Consensus 12 ~lyEl~Y~~~~~Wf~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~g~~~~ 91 (115)
-.+...+-+.+.||...|.|- |......+-+----+...+.++.+..+..+++++-||+..++..--| .|...|+-++
T Consensus 44 ~~f~~a~~k~~~~~~~~~~r~-~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iV-Elt~~Gdlir 121 (316)
T COG3204 44 RVFPCAWFKAGQTNGLDLSRY-IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIV-ELTKEGDLIR 121 (316)
T ss_pred eeeeeEEEeccccccccccch-hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEE-EEecCCceEE
Confidence 346666667889999999988 33221111110011112355666999999999999999998875433 4666776666
Q ss_pred eE
Q psy7671 92 SL 93 (115)
Q Consensus 92 ~v 93 (115)
.+
T Consensus 122 ti 123 (316)
T COG3204 122 TI 123 (316)
T ss_pred Ee
Confidence 55
No 41
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=47.75 E-value=41 Score=27.82 Aligned_cols=34 Identities=12% Similarity=0.280 Sum_probs=31.9
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYE 85 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~ 85 (115)
.+++.|..|.+-+...+|-+++..|.|.+|+|+.
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 4789999999999999999999999999999974
No 42
>KOG0313|consensus
Probab=47.31 E-value=40 Score=29.30 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=31.4
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCCC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYERG 87 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~g 87 (115)
+..+++.+++-++ -..+|+-|-+-||++|||...|
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 5788999999999 8899999999999999997654
No 43
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=46.55 E-value=26 Score=18.16 Aligned_cols=18 Identities=39% Similarity=0.765 Sum_probs=14.7
Q ss_pred ceEEEecCCCCEEEEEEe
Q psy7671 2 IVVFMGGTDGNLYEIKYQ 19 (115)
Q Consensus 2 GRIF~gG~DG~lyEl~Y~ 19 (115)
|.+|.+..||.||=+.-.
T Consensus 7 ~~v~~~~~~g~l~a~d~~ 24 (33)
T smart00564 7 GTVYVGSTDGTLYALDAK 24 (33)
T ss_pred CEEEEEcCCCEEEEEEcc
Confidence 678898889999887753
No 44
>KOG0315|consensus
Probab=46.51 E-value=37 Score=28.27 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=30.4
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
....+|-.+++-+...=|..=.+++.|+||||+.+
T Consensus 122 ~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 122 QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 33578888999999999999999999999999865
No 45
>KOG1408|consensus
Probab=46.12 E-value=96 Score=29.56 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=55.1
Q ss_pred ceEEEecCC----CCEEEEEEecCCCccc-----cccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEe
Q psy7671 2 IVVFMGGTD----GNLYEIKYQRDASWFS-----ASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTR 72 (115)
Q Consensus 2 GRIF~gG~D----G~lyEl~Y~~~~~Wf~-----~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtL 72 (115)
||+|+-+.. +.||...-....+..- ++.+--|..++-. .-+|-++ -..+..++.+..|++...|-|=
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq---~k~FKgs-~~~eG~lIKv~lDPSgiY~atS 659 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ---VKSFKGS-RDHEGDLIKVILDPSGIYLATS 659 (1080)
T ss_pred ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce---eeeeccc-ccCCCceEEEEECCCccEEEEe
Confidence 889988733 6899887655544443 3444444444322 2234443 2455789999999999999999
Q ss_pred cCCCeEEEEEecC
Q psy7671 73 SELGLISVYDLYE 85 (115)
Q Consensus 73 s~~s~I~vy~Lg~ 85 (115)
+++-+|.+||.-+
T Consensus 660 csdktl~~~Df~s 672 (1080)
T KOG1408|consen 660 CSDKTLCFVDFVS 672 (1080)
T ss_pred ecCCceEEEEecc
Confidence 9999999999853
No 46
>KOG0274|consensus
Probab=45.97 E-value=22 Score=31.45 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=30.5
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
+....+..+.+|.. +.+|+-+.+.+|++||+...
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCch
Confidence 46788999999999 99999999999999999643
No 47
>KOG0643|consensus
Probab=44.79 E-value=30 Score=29.06 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=29.9
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEe
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDL 83 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~L 83 (115)
+.+.||.||...-+..||++-++++++.||.-
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s 39 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYS 39 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEe
Confidence 57889999999999999999999999999965
No 48
>PTZ00420 coronin; Provisional
Probab=44.28 E-value=54 Score=29.25 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=30.9
Q ss_pred cCCCceeEEEEeCC-CceEEEecCCCeEEEEEecCCC
Q psy7671 52 TQEDSLAQICIDNS-RNVLYTRSELGLISVYDLYERG 87 (115)
Q Consensus 52 ~~~~~I~qi~vD~s-R~lLYtLs~~s~I~vy~Lg~~g 87 (115)
+..++|..+...+. .++|.|=+.+++|++|++...+
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~ 108 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHND 108 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 35678999999986 7899999999999999997543
No 49
>KOG1332|consensus
Probab=43.66 E-value=20 Score=29.66 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=37.0
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCCCCceeeEEEe
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYERGQGFRSLVSL 96 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~g~~~~~v~s~ 96 (115)
..+|-|-+++.|=....|-|-+++++|++|..+.+|. ...++++
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L 52 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAEL 52 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEe
Confidence 4578899999999999999999999999999998874 3444444
No 50
>KOG1539|consensus
Probab=43.36 E-value=41 Score=31.84 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=32.2
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
+..+.|.+|.+-+...=|-+.+.+|+|++|||...
T Consensus 574 gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 57899999999999999999999999999999743
No 51
>KOG2096|consensus
Probab=43.19 E-value=76 Score=27.40 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=39.1
Q ss_pred ceEEEe-c--CCCCEEEEEEecCCCcccc---ccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCC
Q psy7671 2 IVVFMG-G--TDGNLYEIKYQRDASWFSA---SCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSEL 75 (115)
Q Consensus 2 GRIF~g-G--~DG~lyEl~Y~~~~~Wf~~---kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~ 75 (115)
||.-.. | .|=-+||..|+.+ |=|.. --.+- +.+..+.-++.-++-.-.-|-|.+
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kd-G~fqev~rvf~Lk-------------------GH~saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKD-GTFQEVKRVFSLK-------------------GHQSAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccC-cchhhhhhhheec-------------------cchhheeeeeeCCCcceeEEEecC
Confidence 565433 4 5779999999954 44431 11122 233344444444555556688999
Q ss_pred CeEEEEEec
Q psy7671 76 GLISVYDLY 84 (115)
Q Consensus 76 s~I~vy~Lg 84 (115)
|++++|+..
T Consensus 300 G~wriwdtd 308 (420)
T KOG2096|consen 300 GKWRIWDTD 308 (420)
T ss_pred CcEEEeecc
Confidence 999999986
No 52
>KOG0291|consensus
Probab=42.81 E-value=1.4e+02 Score=28.42 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=46.9
Q ss_pred CEEEEEEecCCCcc---ccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 12 NLYEIKYQRDASWF---SASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 12 ~lyEl~Y~~~~~Wf---~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
+|--|..+.+...| ++-|.-.=+.-..+-++.|-.++ +.+++|+--..-..-.-|||.+++|.|-+|...
T Consensus 147 di~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~---gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 147 DITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALN---GHKDYVVACFFGANSLDLYTVSKDGALFVWTCD 219 (893)
T ss_pred ceeEEEeccCCceEEeccccceEEEEEeccccccceEecc---CCCcceEEEEeccCcceEEEEecCceEEEEEec
Confidence 35555555555554 23333333333444445554443 678899988888888889999999999999987
No 53
>KOG0319|consensus
Probab=42.78 E-value=56 Score=30.53 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=30.6
Q ss_pred CCCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
.+.|++-|++|++-.+|=|=..++.+.|||+.
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~ 135 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIK 135 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEee
Confidence 58899999999999999999999999999995
No 54
>KOG0291|consensus
Probab=40.40 E-value=43 Score=31.57 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=30.9
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
+.+.||..+.+++..++||+.|=+.||+.|++=
T Consensus 476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred CCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 578899999999999999999999999999984
No 55
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=39.99 E-value=1.4e+02 Score=22.34 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=25.4
Q ss_pred EEEEeCCCceEE-EecCCCeEEEEEecCCCC
Q psy7671 59 QICIDNSRNVLY-TRSELGLISVYDLYERGQ 88 (115)
Q Consensus 59 qi~vD~sR~lLY-tLs~~s~I~vy~Lg~~g~ 88 (115)
-|++++..+.|| +-+.++.|..|++..++.
T Consensus 138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred ceEECCcchheeecccccceeEEEecccccc
Confidence 578899998888 778899999999987665
No 56
>KOG4649|consensus
Probab=39.80 E-value=23 Score=29.81 Aligned_cols=30 Identities=20% Similarity=0.557 Sum_probs=23.4
Q ss_pred ceEEEecCCCCEEEEEEecCCCccccccce
Q psy7671 2 IVVFMGGTDGNLYEIKYQRDASWFSASCSK 31 (115)
Q Consensus 2 GRIF~gG~DG~lyEl~Y~~~~~Wf~~kc~k 31 (115)
|-|++|..||+.|-|+|...--=++.||.-
T Consensus 106 glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 106 GLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred ceEEEecCCCcEEEecccccceEEecccCC
Confidence 679999999999999998765544566643
No 57
>KOG0271|consensus
Probab=38.00 E-value=1.3e+02 Score=26.53 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=48.9
Q ss_pred CEEEEEEecCCCccccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 12 NLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 12 ~lyEl~Y~~~~~Wf~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
+..-+.||+++-+ |.+-++|.++.+ | +..++|+.+..-++...|-|=+-+.|++.||+...
T Consensus 87 ~~l~lvyqpqavf---rvrpvtrCssS~----~-------GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te 147 (480)
T KOG0271|consen 87 DVLTLVYQPQAVF---RVRPVTRCSSSI----A-------GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE 147 (480)
T ss_pred heeeEEeccchhh---cccccceecccc----C-------CCCCcEEEEEecCCCceEEecCCCceEEeeccCCC
Confidence 5667889888765 566677766544 1 56889999999999999999999999999999643
No 58
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=37.91 E-value=73 Score=21.48 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=22.0
Q ss_pred EEEEeCCCceEEEecCC-CeEEEEEecC
Q psy7671 59 QICIDNSRNVLYTRSEL-GLISVYDLYE 85 (115)
Q Consensus 59 qi~vD~sR~lLYtLs~~-s~I~vy~Lg~ 85 (115)
-|.+|+.|+.||.=+.. ..|.||....
T Consensus 58 GI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 58 GIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred eEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 46799999999987764 6999998754
No 59
>KOG0289|consensus
Probab=37.51 E-value=97 Score=27.55 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=31.0
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
+...+|..|..-+..--|-|=++++.|..|||.+.
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 45789999999999999999999999999999754
No 60
>KOG0286|consensus
Probab=37.17 E-value=1.1e+02 Score=25.95 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=45.8
Q ss_pred ecCCCCEEEEEEecC-CCcc-ccccceEEe---cCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEE
Q psy7671 7 GGTDGNLYEIKYQRD-ASWF-SASCSKVCL---TSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVY 81 (115)
Q Consensus 7 gG~DG~lyEl~Y~~~-~~Wf-~~kc~kinh---T~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy 81 (115)
.|..|+|.-|....+ ..|| +.-|.|--. ...+ .-+.+|. +.+.-|-.+..=++..-.-|=|++++.++|
T Consensus 183 ~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~----ghesDINsv~ffP~G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFE----GHESDINSVRFFPSGDAFATGSDDATCRLY 256 (343)
T ss_pred cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeec----ccccccceEEEccCCCeeeecCCCceeEEE
Confidence 355677777777773 3355 555554321 1111 1122232 345567777777888888888899999999
Q ss_pred EecCC
Q psy7671 82 DLYER 86 (115)
Q Consensus 82 ~Lg~~ 86 (115)
||.++
T Consensus 257 DlRaD 261 (343)
T KOG0286|consen 257 DLRAD 261 (343)
T ss_pred eecCC
Confidence 99876
No 61
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=37.16 E-value=77 Score=22.62 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=22.8
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
.+.+++..|+-=......|.|. +|||-||+-.
T Consensus 40 ~e~~~v~~L~~~~~~~F~Y~l~-NGTVGvY~~~ 71 (111)
T PF14783_consen 40 TETDKVTSLCSLGGGRFAYALA-NGTVGVYDRS 71 (111)
T ss_pred ecccceEEEEEcCCCEEEEEec-CCEEEEEeCc
Confidence 4566777776666666777776 4899888764
No 62
>PF08168 NUC205: NUC205 domain; InterPro: IPR012584 This domain is found in a novel family of nucleolar proteins [].; GO: 0005634 nucleus
Probab=36.98 E-value=18 Score=22.09 Aligned_cols=9 Identities=44% Similarity=0.925 Sum_probs=7.7
Q ss_pred cCCCCEEEE
Q psy7671 8 GTDGNLYEI 16 (115)
Q Consensus 8 G~DG~lyEl 16 (115)
+.|||+||-
T Consensus 23 ~SDGCiyet 31 (44)
T PF08168_consen 23 SSDGCIYET 31 (44)
T ss_pred ccCCceeee
Confidence 689999984
No 63
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=36.53 E-value=67 Score=16.76 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=18.1
Q ss_pred eEEEEeCCCceEEEecCCCeEEEE
Q psy7671 58 AQICIDNSRNVLYTRSELGLISVY 81 (115)
Q Consensus 58 ~qi~vD~sR~lLYtLs~~s~I~vy 81 (115)
..|++|+..++.=+=+.+..|++|
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 568999777776666777788876
No 64
>KOG0273|consensus
Probab=36.24 E-value=71 Score=28.52 Aligned_cols=35 Identities=9% Similarity=0.221 Sum_probs=32.4
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
+.+.+|.-|.-|++..+|-|=|.++|+++|.++..
T Consensus 357 GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 357 GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred cccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 46789999999999999999999999999999865
No 65
>KOG1912|consensus
Probab=36.03 E-value=22 Score=33.79 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=30.5
Q ss_pred CceeEEEEeCCCceEEEecCCCeEEEEEecCCCCce
Q psy7671 55 DSLAQICIDNSRNVLYTRSELGLISVYDLYERGQGF 90 (115)
Q Consensus 55 ~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~g~~~ 90 (115)
.+++|+--|..|..||-|+++|.+..|.=......+
T Consensus 275 akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f 310 (1062)
T KOG1912|consen 275 AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEF 310 (1062)
T ss_pred cceeEeccCCCcceEEEEecCCeEEEEEeeccCccc
Confidence 479999999999999999999999998876544444
No 66
>KOG1274|consensus
Probab=35.97 E-value=61 Score=30.91 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=31.2
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
+.+.++.++..|+.+++|-.-+-+|.+++|++.
T Consensus 136 gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 136 GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred ccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 467899999999999999999999999999996
No 67
>KOG0973|consensus
Probab=35.94 E-value=89 Score=29.96 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=30.3
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYE 85 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~ 85 (115)
+.+..++-+.+|+..+.+=+.+.+.+|.||+...
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEccc
Confidence 3567899999999999999999999999999643
No 68
>KOG0649|consensus
Probab=35.88 E-value=1e+02 Score=25.77 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=44.0
Q ss_pred CccccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 23 SWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 23 ~Wf~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
||-.+---+-||++..+---.|--.. ..+-+.|-.|-+|++-|-+.+-.-++.|-.+||..+
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~--~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G 146 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVD--AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG 146 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccC--cccCCccceeEeccCCCcEEEecCCeEEEEEEecCC
Confidence 34434334448888877655553222 246678999999999998888889999999999643
No 69
>PHA02358 hypothetical protein
Probab=35.60 E-value=28 Score=27.09 Aligned_cols=15 Identities=47% Similarity=0.984 Sum_probs=12.3
Q ss_pred EecCCCCEEEEEEecCC
Q psy7671 6 MGGTDGNLYEIKYQRDA 22 (115)
Q Consensus 6 ~gG~DG~lyEl~Y~~~~ 22 (115)
++|+|| ||++|..++
T Consensus 48 ~AgkDG--Y~ieyranD 62 (194)
T PHA02358 48 KAGKDG--YEIEYRAND 62 (194)
T ss_pred ecCCCc--eEEEEecCC
Confidence 567777 999999886
No 70
>KOG0642|consensus
Probab=35.47 E-value=69 Score=28.99 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=33.2
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCCCC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYERGQ 88 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~g~ 88 (115)
+.+.||.++++=..-+-+|+=+-+|+|+.|.++++++
T Consensus 342 aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 342 AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred cccCceEEEEecCCceEEEeeccCceeeeeccCCCCC
Confidence 4578999999999999999999999999999986644
No 71
>KOG0294|consensus
Probab=34.99 E-value=59 Score=27.74 Aligned_cols=71 Identities=17% Similarity=0.335 Sum_probs=44.6
Q ss_pred eEEEecCCCCEEEEEEecCCCccccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEEE
Q psy7671 3 VVFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVYD 82 (115)
Q Consensus 3 RIF~gG~DG~lyEl~Y~~~~~Wf~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~ 82 (115)
||-.|.=.-.||=|.--.+. +-|.+-+ --.|.|-|.-. ....+|.-++| ++..+-+=+++-+|.+||
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~----~~~~~s~-----~~~l~~lF~~~--aH~~sitavAV--s~~~~aSGssDetI~IYD 69 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP----KGCTDSV-----KPTLKPLFAFS--AHAGSITALAV--SGPYVASGSSDETIHIYD 69 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc----ccccccc-----ceeeecccccc--ccccceeEEEe--cceeEeccCCCCcEEEEe
Confidence 45555544566665554433 1122111 11345655432 46778999999 678888888999999999
Q ss_pred ecCC
Q psy7671 83 LYER 86 (115)
Q Consensus 83 Lg~~ 86 (115)
|...
T Consensus 70 m~k~ 73 (362)
T KOG0294|consen 70 MRKR 73 (362)
T ss_pred ccch
Confidence 9865
No 72
>KOG0306|consensus
Probab=34.93 E-value=52 Score=31.03 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=19.4
Q ss_pred CCceeEEEEeCC---------CceEEEecCCCeEEEEEecCC
Q psy7671 54 EDSLAQICIDNS---------RNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 54 ~~~I~qi~vD~s---------R~lLYtLs~~s~I~vy~Lg~~ 86 (115)
......-.||.. +++|-|-..+|...||+|+-+
T Consensus 180 tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 180 TQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred cceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecc
Confidence 345555556543 234455556777888888753
No 73
>KOG2063|consensus
Probab=34.85 E-value=37 Score=32.13 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=45.1
Q ss_pred ceEEEecCCCCEEEEEEecCCCccccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEE
Q psy7671 2 IVVFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVY 81 (115)
Q Consensus 2 GRIF~gG~DG~lyEl~Y~~~~~Wf~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy 81 (115)
+-+|+|+.||+|+=+.-....--.+.- . +.=|.-+..-| .+++|.+|.+=+..++|+.|+. |.|.+|
T Consensus 27 ~~l~vGt~~G~L~lY~i~~~~~~~~~~----------~-~~~~~~~~~~~-~kk~i~~l~~~~~~~~ll~l~d-sqi~~~ 93 (877)
T KOG2063|consen 27 NHLYVGTRDGDLYLYSIYERGNPESVE----------L-VTETVKFEKEF-SKKPINKLLVCASLELLLILSD-SQIAVH 93 (877)
T ss_pred CEEEEEcCCCcEEEEeccccccccchh----------h-hcchhHHhhhh-ccchhHHHhhcchhcchheecC-Ccceee
Confidence 568999999988754433221111100 0 00111122222 3899999999999999999997 789999
Q ss_pred Eec
Q psy7671 82 DLY 84 (115)
Q Consensus 82 ~Lg 84 (115)
.++
T Consensus 94 ~l~ 96 (877)
T KOG2063|consen 94 KLP 96 (877)
T ss_pred ecC
Confidence 986
No 74
>KOG1188|consensus
Probab=34.61 E-value=38 Score=29.06 Aligned_cols=32 Identities=31% Similarity=0.543 Sum_probs=28.9
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEe
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDL 83 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~L 83 (115)
+..+-+..+..|..+..|||=.++|.+.+|..
T Consensus 314 ~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 314 GHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred CcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 35677888999999999999999999999995
No 75
>KOG0279|consensus
Probab=34.53 E-value=1e+02 Score=25.84 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=31.9
Q ss_pred cCCCceeEEEEeCC-CceEEEecCCCeEEEEEecCCC
Q psy7671 52 TQEDSLAQICIDNS-RNVLYTRSELGLISVYDLYERG 87 (115)
Q Consensus 52 ~~~~~I~qi~vD~s-R~lLYtLs~~s~I~vy~Lg~~g 87 (115)
+.++.|.++.+-.. +++||+.|.+-+|-+|+|..+.
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd 49 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD 49 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc
Confidence 46788999988777 9999999999999999998763
No 76
>KOG0321|consensus
Probab=33.38 E-value=92 Score=28.87 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=0.0
Q ss_pred EEEec-CCC--CEEEEEEecCCCccccccceEEecCCc---ccccchhhhhhhccCCCceeE---EEEeCCCceEEEecC
Q psy7671 4 VFMGG-TDG--NLYEIKYQRDASWFSASCSKVCLTSSS---LTYILPTFINALITQEDSLAQ---ICIDNSRNVLYTRSE 74 (115)
Q Consensus 4 IF~gG-~DG--~lyEl~Y~~~~~Wf~~kc~kinhT~~~---~ssllPs~~~~~~~~~~~I~q---i~vD~sR~lLYtLs~ 74 (115)
+|+.| .|| -||.+.=.. -.-+..-|+.+--+... -+..+-.=...+......|.+ .+.=..-+.|-+=++
T Consensus 159 vF~tGgRDg~illWD~R~n~-~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga 237 (720)
T KOG0321|consen 159 VFCTGGRDGEILLWDCRCNG-VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA 237 (720)
T ss_pred ceeeccCCCcEEEEEEeccc-hhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC
Q ss_pred -CCeEEEEEecCC
Q psy7671 75 -LGLISVYDLYER 86 (115)
Q Consensus 75 -~s~I~vy~Lg~~ 86 (115)
+|+|+||||..+
T Consensus 238 ~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 238 ADSTIKVWDLRKN 250 (720)
T ss_pred CCcceEEEeeccc
No 77
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=33.11 E-value=1.3e+02 Score=23.96 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=14.5
Q ss_pred ceEEEecCCCeEEEEEec
Q psy7671 67 NVLYTRSELGLISVYDLY 84 (115)
Q Consensus 67 ~lLYtLs~~s~I~vy~Lg 84 (115)
+.||+.++++.|.+++..
T Consensus 321 ~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred CEEEEEeCCCEEEEEECC
Confidence 588999988988888753
No 78
>KOG0642|consensus
Probab=32.76 E-value=1.1e+02 Score=27.87 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=30.9
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYE 85 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~ 85 (115)
+..|.+-.++.-+++.-|-..|.+||++.|....
T Consensus 394 Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 394 GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred ccccceeeeeecccccceeeecCCceEEeeccCC
Confidence 6788999999999999999999999999999864
No 79
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=32.68 E-value=79 Score=25.33 Aligned_cols=32 Identities=25% Similarity=0.146 Sum_probs=28.3
Q ss_pred CCCceeEEEEeCCCceEEEecCCC-eEEEEEec
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELG-LISVYDLY 84 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s-~I~vy~Lg 84 (115)
...+|.||.|-++-++|-+|+.+. .+.+|+|.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 356999999999999999999876 49999994
No 80
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=32.54 E-value=74 Score=18.87 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=17.3
Q ss_pred ceEEEecCCCCEEEEEEecCC
Q psy7671 2 IVVFMGGTDGNLYEIKYQRDA 22 (115)
Q Consensus 2 GRIF~gG~DG~lyEl~Y~~~~ 22 (115)
|-...-+.||..+.+.|.+++
T Consensus 29 GsY~y~~pdG~~~~V~Y~Ad~ 49 (52)
T PF00379_consen 29 GSYSYIDPDGQTRTVTYVADE 49 (52)
T ss_pred EEEEEECCCCCEEEEEEECCC
Confidence 556677889999999998864
No 81
>KOG0301|consensus
Probab=32.48 E-value=1.1e+02 Score=28.45 Aligned_cols=33 Identities=12% Similarity=-0.053 Sum_probs=19.7
Q ss_pred CCCceeEEEEeCCCceEEEecCCCeEEEEEecC
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELGLISVYDLYE 85 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~ 85 (115)
.+..-+.-++==.-+.+-|=|.+-+|+.|.=+.
T Consensus 138 gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~ 170 (745)
T KOG0301|consen 138 GHTASVWAVASLPENTYVTGSADKTIKLWKGGT 170 (745)
T ss_pred CcchheeeeeecCCCcEEeccCcceeeeccCCc
Confidence 344455555544555666777777777776544
No 82
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=32.37 E-value=49 Score=20.38 Aligned_cols=51 Identities=20% Similarity=0.145 Sum_probs=30.7
Q ss_pred EEeCCCceEEEecCCCeEEEEEecCCCCceeeE--------EEecHHHHHHHHHhhhhh
Q psy7671 61 CIDNSRNVLYTRSELGLISVYDLYERGQGFRSL--------VSLSEEMIVQQALKFHIV 111 (115)
Q Consensus 61 ~vD~sR~lLYtLs~~s~I~vy~Lg~~g~~~~~v--------~s~s~~~i~~~a~~~~~~ 111 (115)
.||.+|-+-.-+...-.=++|.+..+|...-.+ ..-...+-+++|...||+
T Consensus 2 ~vD~~~C~gcg~C~~~aP~vF~~d~~g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~ 60 (65)
T PF13459_consen 2 WVDRDRCIGCGLCVELAPEVFELDDDGKAVVLVDGGEGEGEVPEEDEEDVREAAEACPV 60 (65)
T ss_pred EEecccCcCccHHHhhCCccEEECCCCCEEEEecCcccccCCCchhHHHHHHHHHhCCH
Confidence 567777666666665555677777665432221 122345667777888875
No 83
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=31.80 E-value=1.1e+02 Score=24.90 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=13.1
Q ss_pred ceEEEecCCCeEEEEEe
Q psy7671 67 NVLYTRSELGLISVYDL 83 (115)
Q Consensus 67 ~lLYtLs~~s~I~vy~L 83 (115)
+.||..+.+|.+-++++
T Consensus 377 ~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 377 DKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEeCCceEEEEeC
Confidence 46888888888877665
No 84
>KOG1409|consensus
Probab=31.65 E-value=46 Score=28.76 Aligned_cols=32 Identities=13% Similarity=0.320 Sum_probs=29.3
Q ss_pred CCceeEEEEeCCCceEEEecCCCeEEEEEecC
Q psy7671 54 EDSLAQICIDNSRNVLYTRSELGLISVYDLYE 85 (115)
Q Consensus 54 ~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~ 85 (115)
+-.|.-|-.|++|++|-|=..+-.|.+||+.+
T Consensus 364 ~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 364 KTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred ccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 34799999999999999999999999999964
No 85
>KOG2096|consensus
Probab=31.59 E-value=98 Score=26.73 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=31.3
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
+..+.|..|+.-....-|-|.+.+.+|++|++.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~ 116 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVR 116 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecc
Confidence 578999999999999999999999999999995
No 86
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.18 E-value=84 Score=24.22 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=28.4
Q ss_pred ccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 41 YILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 41 sllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
.++|.+.- ..+++.|.. ..+-|..+++.|.+.||++...
T Consensus 4 rl~P~i~L-----gs~~~~l~~--~~~~Ll~iT~~G~l~vWnl~~~ 42 (219)
T PF07569_consen 4 RLLPPIVL-----GSPVSFLEC--NGSYLLAITSSGLLYVWNLKKG 42 (219)
T ss_pred cccCcEec-----CCceEEEEe--CCCEEEEEeCCCeEEEEECCCC
Confidence 35676443 346666666 4556999999999999999764
No 87
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=31.02 E-value=91 Score=26.55 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=30.9
Q ss_pred eeEEEEeCCCceEEEecCCC-eEEEEEecCCCCceeeEE
Q psy7671 57 LAQICIDNSRNVLYTRSELG-LISVYDLYERGQGFRSLV 94 (115)
Q Consensus 57 I~qi~vD~sR~lLYtLs~~s-~I~vy~Lg~~g~~~~~v~ 94 (115)
=....++++.+.|+...++| +|.||...+....+..+.
T Consensus 293 PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 293 PRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred CccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 47889999999999999988 899999987644444443
No 88
>KOG1539|consensus
Probab=30.84 E-value=1.5e+02 Score=28.31 Aligned_cols=55 Identities=15% Similarity=0.366 Sum_probs=44.8
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC--------CCceeeEEEecHHHHHHHHH
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER--------GQGFRSLVSLSEEMIVQQAL 106 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~--------g~~~~~v~s~s~~~i~~~a~ 106 (115)
..+.+|+.+++|..+.++-+=+.+|.+..|+.+.. |.+...+..-..++++-.|.
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 35789999999999999999999999999999753 44566777777777766554
No 89
>KOG1188|consensus
Probab=30.42 E-value=85 Score=26.97 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=25.7
Q ss_pred eeEEEEeCCCceEEEecCCCeEEEEEecCCCCc
Q psy7671 57 LAQICIDNSRNVLYTRSELGLISVYDLYERGQG 89 (115)
Q Consensus 57 I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~g~~ 89 (115)
.+.+.=+++-|.+|+=+.+|+|++||+...++.
T Consensus 75 ~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~ 107 (376)
T KOG1188|consen 75 GVRFISCDSPHGVISCSSDGTVRLWDIRSQAES 107 (376)
T ss_pred ceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence 344444559999999999999999999866543
No 90
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=30.40 E-value=1.1e+02 Score=22.25 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=25.3
Q ss_pred CceeEEEEeCCCceEEEe-cCCCeEEEEEecC
Q psy7671 55 DSLAQICIDNSRNVLYTR-SELGLISVYDLYE 85 (115)
Q Consensus 55 ~~I~qi~vD~sR~lLYtL-s~~s~I~vy~Lg~ 85 (115)
..+..+.+++..+.||+- ..+++|.+|++..
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 457778898888899986 4589999999964
No 91
>PF01868 UPF0086: Domain of unknown function UPF0086; InterPro: IPR002730 The p29 subunit (also known as Rpp29 or Pop4) of the related ribonucleoproteins ribonuclease (RNase) P and RNase MRP can be found in both eukaryotes and arachea []. The structure of the RNase P subunit, Rpp29, from Methanobacterium thermoautotrophicum has been determined. Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. It contains a structured beta-barrel core and unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues that could be involved in RNA contacts in the protein-RNA complex []. Rpp29 (3.1.26.5 from EC) catalyses the endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor. It interacts with the Rpp25 and Pop5 subunits. RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA (approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor (approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits Mth Rpp29, a homologue of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme []. In Saccharomyces cerevisiae (Baker's yeast), RNase P consists of 9 protein subunits (Pop1, Pop3-8, Rpr2 and Rpp1), while in humans there are 10 subunits (Rpp14, 20, 21, 25, 29, 30, 38, 40, hPop1, 5). RNase MRP (mitochondrial RNA processing) is an rRNA processing enzyme that cleaves a specific site within precursor rRNA to generate the mature 5'-end of 5.8S rRNA []. RNase MRP also cleaves primers for mitochondrial DNA replication and CLB2 mRNA. In yeast, RNase MRP possesses one putatively catalytic RNA and at least 9 protein subunits and is highly related to RNase P (Pop1, Pop3-Pop8, Rpp1, Snm1 and Rmp1).; GO: 0003723 RNA binding, 0004540 ribonuclease activity, 0006364 rRNA processing, 0006379 mRNA cleavage, 0008033 tRNA processing, 0000172 ribonuclease MRP complex, 0030677 ribonuclease P complex; PDB: 1V76_B 2ZAE_C 1OQK_A 2KI7_A 1TSF_A 1TS9_A 1PC0_A.
Probab=30.21 E-value=66 Score=21.64 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.3
Q ss_pred CceeEEEEeCCCceEEEecCCC
Q psy7671 55 DSLAQICIDNSRNVLYTRSELG 76 (115)
Q Consensus 55 ~~I~qi~vD~sR~lLYtLs~~s 76 (115)
-.+.-++||+++|.+.-.++++
T Consensus 28 vG~~GiVV~ETknt~~I~t~~~ 49 (89)
T PF01868_consen 28 VGIEGIVVDETKNTFVIVTEDG 49 (89)
T ss_dssp TTEEEEEEEEETTEEEEEETTE
T ss_pred cCCEEEEEEcccceEEEEecCC
Confidence 3599999999999999999998
No 92
>PF06449 DUF1082: Mitochondrial domain of unknown function (DUF1082); InterPro: IPR009455 The domain is found exclusively in plant mitochonchria and is a putative homing endonuclease, though such a function remains to be demonstrated. The domain is found C-terminal to the plant mitochondrial ATPase subunit 8 domain IPR003319 from INTERPRO.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0005739 mitochondrion, 0016021 integral to membrane
Probab=30.11 E-value=33 Score=21.42 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=10.0
Q ss_pred CCceEEEecCCC
Q psy7671 65 SRNVLYTRSELG 76 (115)
Q Consensus 65 sR~lLYtLs~~s 76 (115)
+||+||-.++.+
T Consensus 25 ErnI~YlIskss 36 (51)
T PF06449_consen 25 ERNILYLISKSS 36 (51)
T ss_pred ccceEEEEeecc
Confidence 799999998744
No 93
>KOG0296|consensus
Probab=29.95 E-value=1.3e+02 Score=26.09 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=29.7
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYE 85 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~ 85 (115)
..+++|+++.-++ -..|||=+.++.|+.||-..
T Consensus 325 ~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 325 EHEDGVTKLKWLN-TDYLLTACANGKVRQWDART 357 (399)
T ss_pred cCCCceEEEEEcC-cchheeeccCceEEeeeccc
Confidence 4688999999999 89999999999999999754
No 94
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.79 E-value=3.2e+02 Score=25.25 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=49.3
Q ss_pred EecCCC-CEEEEEEec--CCCcc-ccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCC---CceEEEecCCCeE
Q psy7671 6 MGGTDG-NLYEIKYQR--DASWF-SASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNS---RNVLYTRSELGLI 78 (115)
Q Consensus 6 ~gG~DG-~lyEl~Y~~--~~~Wf-~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~s---R~lLYtLs~~s~I 78 (115)
+.|..| .|-|| .+. .+|-| ..+....|.|...-.. |+.+ ...-.|.|+.-=+. ..-|-.|+++++|
T Consensus 101 l~G~~~v~V~~L-P~r~g~~~~~~~g~~~i~Crt~~v~~~----~~~~--~~~~~i~qv~WhP~s~~~~~l~vLtsdn~l 173 (717)
T PF10168_consen 101 LVGPRGVVVLEL-PRRWGKNGEFEDGKKEINCRTVPVDER----FFTS--NSSLEIKQVRWHPWSESDSHLVVLTSDNTL 173 (717)
T ss_pred EEcCCcEEEEEe-ccccCccccccCCCcceeEEEEEechh----hccC--CCCceEEEEEEcCCCCCCCeEEEEecCCEE
Confidence 446666 66666 211 12334 2445556666544322 3322 33456777766544 5677799999999
Q ss_pred EEEEecCCCCceeeEEEec
Q psy7671 79 SVYDLYERGQGFRSLVSLS 97 (115)
Q Consensus 79 ~vy~Lg~~g~~~~~v~s~s 97 (115)
|.|++. +......+..++
T Consensus 174 R~y~~~-~~~~p~~v~~~~ 191 (717)
T PF10168_consen 174 RLYDIS-DPQHPWQVLSLS 191 (717)
T ss_pred EEEecC-CCCCCeEEEEcc
Confidence 999996 444555555554
No 95
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=29.06 E-value=1.1e+02 Score=24.39 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=29.8
Q ss_pred CceEEEecCCCCEEEEEEecCCCccccccceEEecCCcccccc--hhhhhhhccCCCceeEEEEeCCCceEEEecCCCeE
Q psy7671 1 MIVVFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYIL--PTFINALITQEDSLAQICIDNSRNVLYTRSELGLI 78 (115)
Q Consensus 1 ~GRIF~gG~DG~lyEl~Y~~~~~Wf~~kc~kinhT~~~~ssll--Ps~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I 78 (115)
+++||+++ +|.||-+. +++|+.. ++.+.....+. +.-+.. .+=+.-..|++| ...+||++..++++
T Consensus 36 ~~~i~~~P-~g~lY~I~---~~~lY~~-----~~~~~~~~~~~~~~~~Ig~--g~W~~F~~i~~d-~~G~LYaV~~~G~l 103 (229)
T PF14517_consen 36 FRDIAAGP-NGRLYAIR---NDGLYRG-----SPSSSGGNTWDSGSKQIGD--GGWNSFKFIFFD-PTGVLYAVTPDGKL 103 (229)
T ss_dssp -SEEEE-T-TS-EEEEE---TTEEEEE-----S---STT--HHHH-EEEE---S-GGG-SEEEE--TTS-EEEEETT-EE
T ss_pred cceEEEcC-CceEEEEE---CCceEEe-----cCCccCcccccccCccccc--CcccceeEEEec-CCccEEEeccccce
Confidence 46787776 78888776 4466543 11111111111 111110 011233367776 56899999999998
No 96
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=28.88 E-value=1.1e+02 Score=25.99 Aligned_cols=41 Identities=29% Similarity=0.491 Sum_probs=26.0
Q ss_pred ceeEEEEeCCCc-eEEEecC-CCeEEEEEecCCCCceeeEEEec
Q psy7671 56 SLAQICIDNSRN-VLYTRSE-LGLISVYDLYERGQGFRSLVSLS 97 (115)
Q Consensus 56 ~I~qi~vD~sR~-lLYtLs~-~s~I~vy~Lg~~g~~~~~v~s~s 97 (115)
++..|.|-+..+ +||+++. ++.|.|||... |+..+.+..+.
T Consensus 290 ~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~lG 332 (342)
T PF06433_consen 290 PIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQLG 332 (342)
T ss_dssp EESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE---S
T ss_pred ccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhccC
Confidence 455666665555 9999976 68999999864 55556555443
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=28.83 E-value=1.5e+02 Score=21.54 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=24.3
Q ss_pred ceeEEEEeCCCceEEEec-CCCeEEEEEecC
Q psy7671 56 SLAQICIDNSRNVLYTRS-ELGLISVYDLYE 85 (115)
Q Consensus 56 ~I~qi~vD~sR~lLYtLs-~~s~I~vy~Lg~ 85 (115)
....+++++..+.||+-+ .++.|.+|++..
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 456788999999898875 478999999964
No 98
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.60 E-value=73 Score=22.95 Aligned_cols=45 Identities=7% Similarity=0.168 Sum_probs=32.0
Q ss_pred EEEeCCCceEEEecC----CCeEEEEEecCCCCceeeEEEecHHHHHHHHHhh
Q psy7671 60 ICIDNSRNVLYTRSE----LGLISVYDLYERGQGFRSLVSLSEEMIVQQALKF 108 (115)
Q Consensus 60 i~vD~sR~lLYtLs~----~s~I~vy~Lg~~g~~~~~v~s~s~~~i~~~a~~~ 108 (115)
+++-+.+=+||...+ ++-..+.||.. +-++.+++++|+.+++.+-
T Consensus 25 vVv~~~Kl~lYd~e~~~~~~~p~~vldl~~----~fhv~~V~asDVi~a~~kD 73 (112)
T cd01242 25 VVVSSRKILFYNDEQDKENSTPSMILDIDK----LFHVRPVTQGDVYRADAKE 73 (112)
T ss_pred EEEeCCEEEEEecCccccCCCcEEEEEccc----eeeeecccHHHeeecCccc
Confidence 556666667787433 45678888843 7888999999998877543
No 99
>KOG0272|consensus
Probab=28.36 E-value=80 Score=27.80 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=31.5
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
+.-++|..+..++..-.|-|=+++++++||||...
T Consensus 343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred ccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 45678999999999999999999999999999643
No 100
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=27.66 E-value=1e+02 Score=24.66 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=27.0
Q ss_pred CceeEEEEeCCCceEEEecCCCeEEEEEecC
Q psy7671 55 DSLAQICIDNSRNVLYTRSELGLISVYDLYE 85 (115)
Q Consensus 55 ~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~ 85 (115)
..-.-+++|+..++.|++-+++.|-.|+...
T Consensus 186 ~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 186 SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp -SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred CCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 3567799999999999999999999999864
No 101
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=26.62 E-value=2e+02 Score=24.09 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=26.9
Q ss_pred CCceeEEEEeCCCc-eEEEec-CCCeEEEEEecC
Q psy7671 54 EDSLAQICIDNSRN-VLYTRS-ELGLISVYDLYE 85 (115)
Q Consensus 54 ~~~I~qi~vD~sR~-lLYtLs-~~s~I~vy~Lg~ 85 (115)
......|++.+..+ +||+.+ ..++|.|+|...
T Consensus 298 G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 298 GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 45788999999988 999999 467899999743
No 102
>KOG0640|consensus
Probab=25.92 E-value=1e+02 Score=26.63 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=29.3
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEe
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDL 83 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~L 83 (115)
...+.|.|+-.-++.++--|=|.+|.|++||=
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence 45789999999999999999999999999984
No 103
>smart00051 DSL delta serrate ligand.
Probab=25.81 E-value=72 Score=20.21 Aligned_cols=19 Identities=21% Similarity=0.704 Sum_probs=14.9
Q ss_pred EEecCCCccccccceEEec
Q psy7671 17 KYQRDASWFSASCSKVCLT 35 (115)
Q Consensus 17 ~Y~~~~~Wf~~kc~kinhT 35 (115)
...=+++||+.+|.|.|.-
T Consensus 18 rv~C~~~~yG~~C~~~C~~ 36 (63)
T smart00051 18 RVTCDENYYGEGCNKFCRP 36 (63)
T ss_pred EeeCCCCCcCCccCCEeCc
Confidence 3344589999999999964
No 104
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=24.91 E-value=51 Score=19.81 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=20.0
Q ss_pred CCCEEEEEEecCCCccccccceEEe
Q psy7671 10 DGNLYEIKYQRDASWFSASCSKVCL 34 (115)
Q Consensus 10 DG~lyEl~Y~~~~~Wf~~kc~kinh 34 (115)
-|..-|..++.+.+|+..+..+++-
T Consensus 5 ~G~~Ve~~~~~~~~W~~a~V~~~~~ 29 (61)
T smart00743 5 KGDRVEVFSKEEDSWWEAVVTKVLG 29 (61)
T ss_pred CCCEEEEEECCCCEEEEEEEEEECC
Confidence 3678899998888999888777763
No 105
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=24.87 E-value=1.2e+02 Score=15.93 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCceEE-EecCCCeEEEEEec
Q psy7671 55 DSLAQICIDNSRNVLY-TRSELGLISVYDLY 84 (115)
Q Consensus 55 ~~I~qi~vD~sR~lLY-tLs~~s~I~vy~Lg 84 (115)
.....|++|..++.|| +=.....|.++++.
T Consensus 9 ~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~ 39 (43)
T smart00135 9 GHPNGLAVDWIEGRLYWTDWGLDVIEVANLD 39 (43)
T ss_pred CCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence 3445699999999888 55566789999884
No 106
>PLN00181 protein SPA1-RELATED; Provisional
Probab=24.64 E-value=1.4e+02 Score=26.93 Aligned_cols=30 Identities=13% Similarity=0.392 Sum_probs=27.2
Q ss_pred CCceeEEEEeCCCceEEEecCCCeEEEEEe
Q psy7671 54 EDSLAQICIDNSRNVLYTRSELGLISVYDL 83 (115)
Q Consensus 54 ~~~I~qi~vD~sR~lLYtLs~~s~I~vy~L 83 (115)
.+.|..++.++..+.|.+-+.+|+|++|+|
T Consensus 763 ~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 763 SQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 356899999999999999999999999987
No 107
>KOG0292|consensus
Probab=24.56 E-value=1e+02 Score=29.93 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=28.5
Q ss_pred CCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
....+..+..++..+++-+=+++.+|+||||.+.
T Consensus 249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred ccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 3456777778888899999999999999999865
No 108
>KOG0641|consensus
Probab=24.51 E-value=1.3e+02 Score=25.07 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=29.2
Q ss_pred CCCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
+...+..++||++..+|-+=.++|+-.+||+.
T Consensus 230 essavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred ccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 44679999999999999999999999999994
No 109
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=24.32 E-value=2e+02 Score=24.84 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=37.7
Q ss_pred EEeCCCceEEEecCCCeEEEEEecCCCCce----eeEEEecHHHHHHHHHhhhhhh
Q psy7671 61 CIDNSRNVLYTRSELGLISVYDLYERGQGF----RSLVSLSEEMIVQQALKFHIVY 112 (115)
Q Consensus 61 ~vD~sR~lLYtLs~~s~I~vy~Lg~~g~~~----~~v~s~s~~~i~~~a~~~~~~~ 112 (115)
.+.+.++++=+|+++|+++|-.||.+-..+ ..-..+++.++.++...+.+..
T Consensus 337 ~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~~~r~~~y~~~~~E~~~l~~~I 392 (418)
T PF14727_consen 337 NFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVPPLESREIDYEELEEELKELEKEI 392 (418)
T ss_pred ccCCCCceEEEEcCCCcEEEEEeCCCCccccCCCcccccCCHHHHHHHHHHHHHHH
Confidence 344679999999999999999999764432 2224677778877776655543
No 110
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=24.26 E-value=2.1e+02 Score=21.33 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=27.0
Q ss_pred ceeEEEEeCCCceEEEecCCCeEEEEEecCCCCceeeE
Q psy7671 56 SLAQICIDNSRNVLYTRSELGLISVYDLYERGQGFRSL 93 (115)
Q Consensus 56 ~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~g~~~~~v 93 (115)
..--|+||...++.=+....+.|.+|+. +|+....+
T Consensus 185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p--~G~~~~~i 220 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGGGRIVVFDP--DGKLLREI 220 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETTTEEEEEET--TSCEEEEE
T ss_pred CCCcceEcCCCCEEEEEcCCCEEEEECC--CccEEEEE
Confidence 4778999999998888888999999986 46544443
No 111
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=24.18 E-value=1.3e+02 Score=19.30 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=27.2
Q ss_pred CCCceeEEEEeCCCceEEEecCCCeEEEEEecCCC
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELGLISVYDLYERG 87 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~g 87 (115)
..+..-.+-|+..+.++|...++. |.+.++|..+
T Consensus 53 ~~~g~~r~rv~~~~Riiy~i~~~~-I~vi~ig~r~ 86 (89)
T TIGR00053 53 PWKGFRRCHIKPDVVLIYKVKDDT-LIFVRLGHHS 86 (89)
T ss_pred CcCCCEEEeeCCCEEEEEEECCCE-EEEEEeCchH
Confidence 344567889988899999998765 9999998765
No 112
>PHA02851 EEV glycoprotein; Provisional
Probab=23.63 E-value=68 Score=24.97 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=22.9
Q ss_pred CceeEEEEe-CCCceEEEecCCCeEEEEEecC
Q psy7671 55 DSLAQICID-NSRNVLYTRSELGLISVYDLYE 85 (115)
Q Consensus 55 ~~I~qi~vD-~sR~lLYtLs~~s~I~vy~Lg~ 85 (115)
+.+..|..| ++..++|-|.+++.+.||+++.
T Consensus 148 dnvenitydlpqdsiiydldeksdvavydipe 179 (223)
T PHA02851 148 DNVENITYDLPQDSIIYDLDEKSDVAVYDIPE 179 (223)
T ss_pred cchhhccccCCccceeeecccccceeeeecch
Confidence 344445555 4567899999999999999974
No 113
>PLN00181 protein SPA1-RELATED; Provisional
Probab=23.57 E-value=1.6e+02 Score=26.46 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=29.5
Q ss_pred CCCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
....|..+..|+..++|.|=+.+++|++|++.
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~ 513 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECE 513 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 56789999999999999999999999999985
No 114
>PF07938 Fungal_lectin: Fungal fucose-specific lectin; InterPro: IPR012475 Lectins are involved in many recognition events at the molecular or cellular level. These fungal lectins, such as Aleuria aurantialectin (AAL, P18891 from SWISSPROT), specifically recognise fucosylated glycans. AAL is a dimeric protein, with each monomer being organised into a six-bladed beta-propeller fold and a small antiparallel two-stranded beta-sheet. The beta-propeller fold is important in fucose recognition; five binding pockets are found between the propeller blades. The small beta-sheet, on the other hand, is involved in the dimerisation process []. ; PDB: 1IUC_A 1OFZ_A 1IUB_A 2BS5_A 3ZWE_B 3ZW1_B 3ZZV_A 3ZW2_A 3ZW0_A 2BS6_C ....
Probab=23.27 E-value=86 Score=26.00 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=17.9
Q ss_pred eEEEecCCCCEEEEEEecCCCccc
Q psy7671 3 VVFMGGTDGNLYEIKYQRDASWFS 26 (115)
Q Consensus 3 RIF~gG~DG~lyEl~Y~~~~~Wf~ 26 (115)
|||+.+.|+-|-|+.|..+.+|-.
T Consensus 68 rvyyl~~~n~l~E~~~d~~~~W~~ 91 (311)
T PF07938_consen 68 RVYYLSNDNILHEICYDSGGGWYQ 91 (311)
T ss_dssp EEEEE-TT-BEEEEEEES-S-EEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccc
Confidence 899999999999999987788953
No 115
>KOG0284|consensus
Probab=23.15 E-value=1.5e+02 Score=26.18 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=30.6
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
..+..|.+++.-..-|.|-|+|++.+++|||+.
T Consensus 262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred hccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence 467789999999999999999999999999996
No 116
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=23.11 E-value=1.4e+02 Score=27.65 Aligned_cols=31 Identities=26% Similarity=0.508 Sum_probs=29.6
Q ss_pred CCCceeEEEEeCCCceEEEecCCCeEEEEEe
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELGLISVYDL 83 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~L 83 (115)
-+++|+.+.+...-...|++.++|.|+.|+.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 4789999999999999999999999999999
No 117
>KOG1408|consensus
Probab=23.06 E-value=1.2e+02 Score=28.94 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCCceeEEEEeCCCceEEEecCCCeEEEEEecC
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELGLISVYDLYE 85 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~ 85 (115)
.+-.|-+|.||++-++.-|-+++-.|++|++..
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES 627 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence 466899999999999999999999999999964
No 118
>KOG1240|consensus
Probab=22.98 E-value=49 Score=32.77 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=35.5
Q ss_pred CceeEEEE-eCCCceEEEecCCCeEEEEEecC---CCCceeeEEEecHHHHHHHHHhhhh
Q psy7671 55 DSLAQICI-DNSRNVLYTRSELGLISVYDLYE---RGQGFRSLVSLSEEMIVQQALKFHI 110 (115)
Q Consensus 55 ~~I~qi~v-D~sR~lLYtLs~~s~I~vy~Lg~---~g~~~~~v~s~s~~~i~~~a~~~~~ 110 (115)
..+..+++ ++.-.++-|.|.+|+|++|++.+ +|..++...+.++..=...+.++|+
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence 34445555 44559999999999999999974 3345676666664332333333443
No 119
>KOG0322|consensus
Probab=22.92 E-value=1.1e+02 Score=25.70 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=29.2
Q ss_pred CCCceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 53 QEDSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 53 ~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
+...+..+.|-+.++||-|-.=++.||||+-.
T Consensus 250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred cCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 56788899999999999999999999999874
No 120
>KOG1332|consensus
Probab=22.66 E-value=1e+02 Score=25.70 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=26.3
Q ss_pred EEEecCCCCEEEEEEecCCCccccccceEEecCC
Q psy7671 4 VFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSS 37 (115)
Q Consensus 4 IF~gG~DG~lyEl~Y~~~~~Wf~~kc~kinhT~~ 37 (115)
.|+|..||+|==|+|..+.+|-.+|... +|+.|
T Consensus 119 LacasSDG~vsvl~~~~~g~w~t~ki~~-aH~~G 151 (299)
T KOG1332|consen 119 LACASSDGKVSVLTYDSSGGWTTSKIVF-AHEIG 151 (299)
T ss_pred EEEeeCCCcEEEEEEcCCCCccchhhhh-ccccc
Confidence 4667799999999999888998877543 57764
No 121
>KOG0275|consensus
Probab=22.64 E-value=68 Score=27.85 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.0
Q ss_pred CCceeEEEEeCCCceEEEecCCCeEEEEE
Q psy7671 54 EDSLAQICIDNSRNVLYTRSELGLISVYD 82 (115)
Q Consensus 54 ~~~I~qi~vD~sR~lLYtLs~~s~I~vy~ 82 (115)
+.-++-++=-+.+|+|-+-++++.+.+|.
T Consensus 479 EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 479 EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccCcccchhhhhcccchhhhcC
Confidence 44566778888999999999999998884
No 122
>KOG2919|consensus
Probab=22.39 E-value=1.3e+02 Score=26.02 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=53.1
Q ss_pred EecCCCCEEEEEEecC-CCccc--cccceEEe---cCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEE
Q psy7671 6 MGGTDGNLYEIKYQRD-ASWFS--ASCSKVCL---TSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLIS 79 (115)
Q Consensus 6 ~gG~DG~lyEl~Y~~~-~~Wf~--~kc~kinh---T~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~ 79 (115)
+||..|-|--|.|-.. +..|+ +||.||-- -.+.- .|=.+-.. -.....=++.-+|+..++|-+=+++|.|+
T Consensus 246 lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~--pv~~L~rh-v~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 246 LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD--PVYALERH-VGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred ecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc--hhhhhhhh-ccCccceEEEecCCCCceeeccCCCccEE
Confidence 3466677888999744 45674 78888731 11110 00011111 12356778899999999999999999999
Q ss_pred EEEecCCCC
Q psy7671 80 VYDLYERGQ 88 (115)
Q Consensus 80 vy~Lg~~g~ 88 (115)
|||+...|+
T Consensus 323 vwdlk~~gn 331 (406)
T KOG2919|consen 323 VWDLKDLGN 331 (406)
T ss_pred EEecCCCCC
Confidence 999987665
No 123
>KOG0266|consensus
Probab=22.12 E-value=2.6e+02 Score=23.60 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=29.8
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYE 85 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~ 85 (115)
+....+-.+.+.+.-+++.+=+.+++|++|++..
T Consensus 244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred CCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence 4566788888888889999999999999999975
No 124
>KOG0285|consensus
Probab=21.84 E-value=1.7e+02 Score=25.62 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=31.4
Q ss_pred cCCCceeEEEEeCCCceEEEecCCCeEEEEEecCC
Q psy7671 52 TQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86 (115)
Q Consensus 52 ~~~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~ 86 (115)
+...+|-++..-+.-.-+||=|-+++|++|||-.+
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG 309 (460)
T ss_pred CCCCcceeEEeecCCCceEEecCCceEEEeeeccC
Confidence 46778999999999999999999999999999654
No 125
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=21.79 E-value=3.2e+02 Score=19.83 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=27.4
Q ss_pred CCceeEEEEeCCCceEEEecCC-CeEEEEEecCCCCceeeEEEec
Q psy7671 54 EDSLAQICIDNSRNVLYTRSEL-GLISVYDLYERGQGFRSLVSLS 97 (115)
Q Consensus 54 ~~~I~qi~vD~sR~lLYtLs~~-s~I~vy~Lg~~g~~~~~v~s~s 97 (115)
..++.--..|+..++||--... ++|+.|.+..+...+..+.+.+
T Consensus 10 s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~ 54 (136)
T PF08954_consen 10 SSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYR 54 (136)
T ss_dssp -SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE-
T ss_pred CCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccc
Confidence 4456667789999999988874 4799999976543456665554
No 126
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=21.01 E-value=2.7e+02 Score=22.07 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=23.2
Q ss_pred CCceeEEEEeCCCceEEEecCCCeEEEEEecCCCCceeeE
Q psy7671 54 EDSLAQICIDNSRNVLYTRSELGLISVYDLYERGQGFRSL 93 (115)
Q Consensus 54 ~~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg~~g~~~~~v 93 (115)
.+.+.-|..|+.++-||+...+... +|.|..+|+-++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~-i~els~~G~vlr~i 59 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGE-IYELSLDGKVLRRI 59 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTE-EEEEETT--EEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCE-EEEEcCCCCEEEEE
Confidence 3458888888888877777765433 45665565544443
No 127
>KOG0263|consensus
Probab=20.63 E-value=6.8e+02 Score=23.47 Aligned_cols=76 Identities=11% Similarity=0.222 Sum_probs=0.0
Q ss_pred eEEEecCCCCEEEEEEecCCCcc--ccccceEEecCCcccccchhhhhhhccCCCceeEEEEeCCCceEEEecCCCeEEE
Q psy7671 3 VVFMGGTDGNLYEIKYQRDASWF--SASCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISV 80 (115)
Q Consensus 3 RIF~gG~DG~lyEl~Y~~~~~Wf--~~kc~kinhT~~~~ssllPs~~~~~~~~~~~I~qi~vD~sR~lLYtLs~~s~I~v 80 (115)
|||.| .-+-|--|.|+..-.|. +..-..|..=--+-+.++-.+... ++.|-.|.+--..++|-+=+.++++++
T Consensus 571 RiF~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H----t~ti~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 571 RIFTG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH----TGTIYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred EEecC-CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc----cCceeEEEEecCCCEEEecCCCCeEEE
Q ss_pred EEe
Q psy7671 81 YDL 83 (115)
Q Consensus 81 y~L 83 (115)
||+
T Consensus 646 WD~ 648 (707)
T KOG0263|consen 646 WDL 648 (707)
T ss_pred EEc
No 128
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=20.57 E-value=2.3e+02 Score=20.60 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=32.1
Q ss_pred ceeEEEE------eCCCceEEEecCCCeEEEEEecCC-CCceeeEEEec
Q psy7671 56 SLAQICI------DNSRNVLYTRSELGLISVYDLYER-GQGFRSLVSLS 97 (115)
Q Consensus 56 ~I~qi~v------D~sR~lLYtLs~~s~I~vy~Lg~~-g~~~~~v~s~s 97 (115)
.+++++- -+.|.+|=.|+.++.+.+|.-..+ -..-.+++-++
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v~dvs 135 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRVADVS 135 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeeeeehh
Confidence 6666653 235999999999999999998764 44567777777
No 129
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=20.02 E-value=2.5e+02 Score=22.29 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=44.3
Q ss_pred ceEEEecCCCCEE----------EEEEecCCCcc-----------------ccccceEEecCCcccccchhhhhhhccCC
Q psy7671 2 IVVFMGGTDGNLY----------EIKYQRDASWF-----------------SASCSKVCLTSSSLTYILPTFINALITQE 54 (115)
Q Consensus 2 GRIF~gG~DG~ly----------El~Y~~~~~Wf-----------------~~kc~kinhT~~~~ssllPs~~~~~~~~~ 54 (115)
|+|=..+.||.+| ||.+...++|+ ..++.++-|-.|.+-++-|
T Consensus 81 ~~i~~~pakG~~~sv~~ll~~~~el~~~~~~g~~v~i~Lsp~DyHr~haP~~G~i~~~~~~~G~~~~v~~---------- 150 (239)
T COG0688 81 GRIVVSPADGRVYSVEELLGPDDELAYGDRDGTRVSIFLSPFDYHRNHAPVDGTIIEVRYVPGKFFSANL---------- 150 (239)
T ss_pred CcEEEecCCCeEEEHHHhcCChhhhccccCCceEEEEEeCcceeeeEeCCCCCEEEEEEEECCceeccCh----------
Confidence 4566667788877 88888888885 3555666555554422211
Q ss_pred CceeEEEEeCCCceEEEecCCCeEEEEEec
Q psy7671 55 DSLAQICIDNSRNVLYTRSELGLISVYDLY 84 (115)
Q Consensus 55 ~~I~qi~vD~sR~lLYtLs~~s~I~vy~Lg 84 (115)
+. +...++|+.+=-=++.+.+.+=.++
T Consensus 151 ~~---~~~~NER~~~~i~t~~g~v~~v~Vg 177 (239)
T COG0688 151 DK---AFTENERNSVLIETEQGKVVVVQVA 177 (239)
T ss_pred hh---hhcccceEEEEEEcCCCcEEEEEEh
Confidence 11 5566777777777777766666664
Done!