RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7671
         (115 letters)



>gnl|CDD|227624 COG5308, NUP170, Nuclear pore complex subunit [Intracellular
           trafficking and secretion].
          Length = 1263

 Score = 67.3 bits (164), Expect = 3e-14
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 3   VVFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQICI 62
           + F G  D N+YE+ Y+   SWF++ CSK+CLT S L+ +LP+F +  I  E ++ Q+ +
Sbjct: 195 IFFGGENDPNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGE-TIKQLAV 253

Query: 63  DNSRNVLYTRSELGLISVYDLYERG 87
           D SR +LY   +   +  Y + + G
Sbjct: 254 DQSRGLLYVLRKKSAVRAYSITKNG 278


>gnl|CDD|220023 pfam08801, Nucleoporin_N, Nup133 N terminal like.  Nup133 is a
           nucleoporin that is crucial for nuclear pore complex
           (NPC) biogenesis. The N terminal forms a seven-bladed
           beta propeller structure. This family now contains other
           sized nucleoporins, including Nup155, Nup8, Nuo132,
           Nup15 and Nup170.
          Length = 411

 Score = 55.2 bits (133), Expect = 4e-10
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 12/101 (11%)

Query: 3   VVFMGGTDG-NLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQIC 61
           + F+G  D   + E++YQ+ +S     CSK+ LTS+S+      F + + + +  +  + 
Sbjct: 148 IFFLGIRDSIGIPELQYQQLSS----KCSKIGLTSASI------FSSLVPSSDREIVSLR 197

Query: 62  IDNSR-NVLYTRSELGLISVYDLYERGQGFRSLVSLSEEMI 101
           +D+SR  +LYT +  G I V+DL   G+     V + E ++
Sbjct: 198 VDSSRGRLLYTLTSKGTIRVWDLSPSGEKLVREVDIYEIIL 238


>gnl|CDD|202524 pfam03068, PAD, Protein-arginine deiminase (PAD).  Members of this
           family are found in mammals. In the presence of calcium
           ions, PAD enzymes EC:3.5.3.15 catalyze the
           post-translational modification reaction responsible for
           the formation of citrulline residues: Protein L-arginine
           + H2O <=> Protein L-citrulline + NH3. Several types are
           recognised (and included in the family) on the basis of
           molecular mass, substrate specificity, and tissue
           localisation. The expression of type I PAD is known to
           be under the control of oestrogen.
          Length = 385

 Score = 28.6 bits (64), Expect = 0.76
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 48  NALITQEDSLAQICIDNSRNVLYTRSELGL 77
           N  + + ++ AQ CID +R VL  + ELGL
Sbjct: 254 NESLRRFNAYAQSCIDWNREVL--KRELGL 281


>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
          Length = 546

 Score = 28.0 bits (62), Expect = 1.1
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 41  YILPTFINALITQEDSLAQI 60
           + L TF+NALITQE S A I
Sbjct: 262 FELRTFLNALITQEVSFAPI 281


>gnl|CDD|220674 pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller.  This
           entry contains bacterial 6-phosphogluconolactonases
           (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyse
           6-phosphogluconolactone to 6-phosphogluconate. The entry
           also contains the fungal muconate lactonising enzyme
           carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and
           muconate cycloisomerase (EC:5.5.1.1), which convert
           cis,cis-muconates to muconolactones and vice versa as
           part of the microbial beta-ketoadipate pathway.
           Structures of proteins in this family have revealed a
           7-bladed beta-propeller fold.
          Length = 344

 Score = 25.6 bits (57), Expect = 5.9
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 45  TFINALITQEDSLAQICIDNSRNVLYTRS-ELGLISVYDLYERGQ 88
           T +N + T   S   + +D     L+  +   G +SVY L   G 
Sbjct: 76  TLLNQVPTGGASPCHLSVDPDGRFLFVANYGGGSVSVYPLDADGS 120


>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
           Validated.
          Length = 187

 Score = 25.7 bits (57), Expect = 6.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 4   VFMGGTDGNLYEI 16
           +F+GG+ GNL  I
Sbjct: 101 IFIGGSGGNLTAI 113


>gnl|CDD|215361 PLN02673, PLN02673, quinolinate synthetase A.
          Length = 724

 Score = 25.8 bits (56), Expect = 7.3
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 28  SCSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSEL 75
           SCS V  + S  T ++P  +  LI +  SL +  +D  + +L+  S L
Sbjct: 66  SCSAVAFSPSQTTELVPCKLQRLIKEFKSLTEP-VDRVKRLLHYASLL 112


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,529,633
Number of extensions: 440495
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 12
Length of query: 115
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 36
Effective length of database: 7,433,636
Effective search space: 267610896
Effective search space used: 267610896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.3 bits)