RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7671
         (115 letters)



>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria
          aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia}
          SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
          Length = 312

 Score = 26.5 bits (57), Expect = 2.3
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 2  IVVFMGGTDGNLYEIKYQRDASWFSASCSKVCLTS---SSLTYILPTFINAL------IT 52
            V+    +G + E +   D  W   S   V   +   S L  +       +      + 
Sbjct: 23 QRVYFQDLNGKIREAQRGGDNPWTGGSSQNVIGEAKLFSPLAAVTWKSAQGIQIRVYCVN 82

Query: 53 QEDSLAQICIDNSR 66
          +++ L++   D S+
Sbjct: 83 KDNILSEFVYDGSK 96


>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
           fibron type III, cell adhesion; 1.80A {Homo sapiens}
           PDB: 1x5k_A
          Length = 211

 Score = 25.1 bits (55), Expect = 5.1
 Identities = 6/31 (19%), Positives = 11/31 (35%)

Query: 14  YEIKYQRDASWFSASCSKVCLTSSSLTYILP 44
           Y I Y  D +          +  + LT+ + 
Sbjct: 141 YIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQ 171


>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
           ATP-binding, cytoplasm, mitochondrion,
           nucleotide-binding, nucleus; 2.95A {Saccharomyces
           cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
          Length = 409

 Score = 24.6 bits (54), Expect = 9.8
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 9/54 (16%)

Query: 59  QICIDNSRNVLYTR--------SELGLIS-VYDLYERGQGFRSLVSLSEEMIVQ 103
            + + +    L+ R         E G +  +  LYE     +      E  + Q
Sbjct: 191 FLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQ 244


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,613,795
Number of extensions: 75880
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 3
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)