RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7671
         (115 letters)



>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4,
           catalytic C-terminal domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 370

 Score = 26.6 bits (59), Expect = 0.73
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 48  NALITQEDSLAQICIDNSRNVLYTRSELGL 77
           N  + + +S  + CID +R +L  + ELGL
Sbjct: 239 NKTLREHNSFVERCIDWNRELL--KRELGL 266


>d1ofza_ b.68.8.1 (A:) Fucose-specific lectin {Orange peel mushroom
           (Aleuria aurantia) [TaxId: 5188]}
          Length = 312

 Score = 25.4 bits (55), Expect = 2.0
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 9/72 (12%)

Query: 2   IVVFMGGTDGNLYEIKYQRDASWFSASCSKVCLTSSSLTYILPTFINALITQEDSLAQIC 61
           + ++   TD  + E  +    SW+    S    ++S+   I      +         ++ 
Sbjct: 178 LRIYYQATDNKIREHCWD-SNSWYVGGFS---ASASAGVSIAAISWGS-----TPNIRVY 228

Query: 62  IDNSRNVLYTRS 73
               R  LY  +
Sbjct: 229 WQKGREELYEAA 240



 Score = 24.6 bits (53), Expect = 3.7
 Identities = 5/23 (21%), Positives = 10/23 (43%)

Query: 2   IVVFMGGTDGNLYEIKYQRDASW 24
           I VF   +  +L + ++     W
Sbjct: 276 ISVFFQASGVSLQQWQWISGKGW 298


>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 91

 Score = 23.0 bits (49), Expect = 7.6
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 29 CSKVCLTSSSLTYILPTFINALITQEDSLAQICIDNSRNVLYTRSELGLISVYDLYER 86
          C+  C  +  L +    F        D   + C+    N + +  +      +DLYE 
Sbjct: 35 CANRCTRNKGLPFTCKAF------VFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYEN 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,446
Number of extensions: 14111
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 6
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)