BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7673
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 294 bits (753), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 145/252 (57%), Positives = 186/252 (73%), Gaps = 9/252 (3%)
Query: 1 MFPVKYP---KLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLG 57
+ PV+ P K G TP+GVLL GPPGCGKTLLAKAVANE+G+NFISVKGPELLNMY+G
Sbjct: 27 LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG 86
Query: 58 ESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRG 117
ESERAVRQ FQRA+NS PCVIFFDE+DALCP+RS + +S+R+VNQLLTEMDG E R
Sbjct: 87 ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEARQ 145
Query: 118 GVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDF 177
VF+MAATNRPDIIDPA++RPGR D+ LFV LP DR IL +TK G P + DV+
Sbjct: 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNL 205
Query: 178 DKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIA 237
+ IA D RC+ ++GADL LV+EA A+ + + ++ ++ G ++ + +HF+ A
Sbjct: 206 EAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKG-----ELKVSHKHFEEA 260
Query: 238 LKRIKPSVSKAD 249
K+++ S+SK D
Sbjct: 261 FKKVRSSISKKD 272
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/271 (43%), Positives = 171/271 (63%), Gaps = 19/271 (7%)
Query: 2 FPVKYPKLFGK--STPS-GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
+PV++P F K TPS GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GE
Sbjct: 33 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 92
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKR--SSLGDNNSSMRIVNQLLTEMDGFEGR 116
SE VR+ F +AR + PCV+FFDE+D++ R + ++ R++NQ+LTEMDG +
Sbjct: 93 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152
Query: 117 GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
VF++ ATNRPDIIDPA++RPGR D+++++ LP+E+ R IL A ++ + +DVD
Sbjct: 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---VAKDVD 209
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVE--------NDDQAGIDDTEQV- 227
+ +A + GFSGADL ++ + A + AI E + S N +++ + V
Sbjct: 210 LEFLA--KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVP 267
Query: 228 TIGFRHFDIALKRIKPSVSKADCKNYESLKQ 258
I HF+ A++ + SVS D + YE Q
Sbjct: 268 EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 298
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 205 bits (521), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 121/271 (44%), Positives = 172/271 (63%), Gaps = 19/271 (7%)
Query: 2 FPVKYPKLFGK--STPS-GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
+PV++P F K TPS GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GE
Sbjct: 495 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKR--SSLGDNNSSMRIVNQLLTEMDGFEGR 116
SE VR+ F +AR + PCV+FFDE+D++ R + ++ R++NQ+LTEMDG +
Sbjct: 555 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614
Query: 117 GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
VF++ ATNRPDIIDPA++RPGR D+++++ LP+E+ R IL A + K P + +DVD
Sbjct: 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR--KSP-VAKDVD 671
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVE--------NDDQAGIDDTEQV- 227
+ +A + GFSGADL ++ + A + AI E + S N +++ + V
Sbjct: 672 LEFLA--KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVP 729
Query: 228 TIGFRHFDIALKRIKPSVSKADCKNYESLKQ 258
I HF+ A++ + SVS D + YE Q
Sbjct: 730 EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 146/247 (59%), Gaps = 10/247 (4%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
P+++P LF G P G+LL GPPG GKTL+A+AVANE G F + GPE+++ GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGG 118
SE +R+ F+ A + P +IF DE+DA+ PKR RIV+QLLT MDG + R
Sbjct: 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQRAH 340
Query: 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFD 178
V +MAATNRP+ IDPA+ R GRFDR + + +P+ R EIL TK K + +DVD +
Sbjct: 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---LADDVDLE 397
Query: 179 KIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQA-GIDDTEQVTIGFRHFDIA 237
++A + G GADL L EA QAI + ++ ++ +D+ + + + F A
Sbjct: 398 QVANE--THGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 238 LKRIKPS 244
L + PS
Sbjct: 456 LSQSNPS 462
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 205 bits (521), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 121/271 (44%), Positives = 172/271 (63%), Gaps = 19/271 (7%)
Query: 2 FPVKYPKLFGK--STPS-GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
+PV++P F K TPS GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GE
Sbjct: 495 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKR--SSLGDNNSSMRIVNQLLTEMDGFEGR 116
SE VR+ F +AR + PCV+FFDE+D++ R + ++ R++NQ+LTEMDG +
Sbjct: 555 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614
Query: 117 GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
VF++ ATNRPDIIDPA++RPGR D+++++ LP+E+ R IL A + K P + +DVD
Sbjct: 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR--KSP-VAKDVD 671
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVE--------NDDQAGIDDTEQV- 227
+ +A + GFSGADL ++ + A + AI E + S N +++ + V
Sbjct: 672 LEFLA--KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVP 729
Query: 228 TIGFRHFDIALKRIKPSVSKADCKNYESLKQ 258
I HF+ A++ + SVS D + YE Q
Sbjct: 730 EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 146/247 (59%), Gaps = 10/247 (4%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
P+++P LF G P G+LL GPPG GKTL+A+AVANE G F + GPE+++ GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGG 118
SE +R+ F+ A + P +IF DE+DA+ PKR RIV+QLLT MDG + R
Sbjct: 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQRAH 340
Query: 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFD 178
V +MAATNRP+ IDPA+ R GRFDR + + +P+ R EIL TK K + +DVD +
Sbjct: 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---LADDVDLE 397
Query: 179 KIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQA-GIDDTEQVTIGFRHFDIA 237
++A + G GADL L EA QAI + ++ ++ +D+ + + + F A
Sbjct: 398 QVANE--THGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 238 LKRIKPS 244
L + PS
Sbjct: 456 LSQSNPS 462
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
P+K+P+LF G P G+LL GPPG GKTLLAKAVA E FI V G EL+ ++GE
Sbjct: 35 LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGE 94
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSS--LGDNNSSMRIVNQLLTEMDGFEGR 116
V+ F+ A+ P +IF DEIDA+ KR+ G + R + QLL EMDGF+ R
Sbjct: 95 GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154
Query: 117 GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
G V ++ ATNRPDI+DPA++RPGRFDRI+ V P+E+ R EIL T++ + EDV+
Sbjct: 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN---LAEDVN 211
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD 217
++IA + EG GA+L+ + EA AI E+ + V DD
Sbjct: 212 LEEIA--KMTEGCVGAELKAICTEAGMNAIRELRDYVTMDD 250
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 146/247 (59%), Gaps = 10/247 (4%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
P+++P LF G P G+LL GPPG GKTL+A+AVANE G F + GPE+++ GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGG 118
SE +R+ F+ A + P +IF DE+DA+ PKR RIV+QLLT MDG + R
Sbjct: 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQRAH 340
Query: 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFD 178
V +MAATNRP+ IDPA+ R GRFDR + + +P+ R EIL TK K + +DVD +
Sbjct: 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---LADDVDLE 397
Query: 179 KIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQA-GIDDTEQVTIGFRHFDIA 237
++A + G GADL L EA QAI + ++ ++ +D+ + + + F A
Sbjct: 398 QVANE--THGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 238 LKRIKPS 244
L + PS
Sbjct: 456 LSQSNPS 462
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 147/248 (59%), Gaps = 12/248 (4%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
P+++P LF G P G+LL GPPG GKTL+A+AVANE G F + GPE+++ GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGG 118
SE +R+ F+ A + P +IF DE+DA+ PKR RIV+QLLT MDG + R
Sbjct: 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQRAH 340
Query: 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFD 178
V +MAATNRP+ IDPA+ R GRFDR + + +P+ R EIL TK K + +DVD +
Sbjct: 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---LADDVDLE 397
Query: 179 KIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDD--TEQVTIGFRHFDI 236
++A + G GADL L EA QAI + ++ ++ +D+ ID + + F
Sbjct: 398 QVANE--THGHVGADLAALCSEAALQAIRKKMDLIDLEDET-IDAEVMNSLAVTMDDFRW 454
Query: 237 ALKRIKPS 244
AL + PS
Sbjct: 455 ALSQSNPS 462
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 147/248 (59%), Gaps = 12/248 (4%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
P+++P LF G P G+LL GPPG GKTL+A+AVANE G F + GPE+++ GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGG 118
SE +R+ F+ A + P +IF DE+DA+ PKR RIV+QLLT MDG + R
Sbjct: 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQRAH 340
Query: 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFD 178
V +MAATNRP+ IDPA+ R GRFDR + + +P+ R EIL TK K + +DVD +
Sbjct: 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---LADDVDLE 397
Query: 179 KIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDD--TEQVTIGFRHFDI 236
++A + G GADL L EA QAI + ++ ++ +D+ ID + + F
Sbjct: 398 QVANE--THGHVGADLAALCSEAALQAIRKKMDLIDLEDET-IDAEVMNSLAVTMDDFRW 454
Query: 237 ALKRIKPS 244
AL + PS
Sbjct: 455 ALSQSNPS 462
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 137/220 (62%), Gaps = 9/220 (4%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
P+++P LF G P G+LL GPPG GKTL+A+AVANE G F + GPE+++ GE
Sbjct: 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGG 118
SE +R+ F+ A + P +IF DE+DA+ PKR RIV+QLLT MDG + R
Sbjct: 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQRAH 340
Query: 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFD 178
V +MAATNRP+ IDPA+ R GRFDR + + +P+ R EIL TK K + +DVD +
Sbjct: 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---LADDVDLE 397
Query: 179 KIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQ 218
++A + G GADL L EA QAI + ++ ++ +D+
Sbjct: 398 QVANE--THGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 132/201 (65%), Gaps = 8/201 (3%)
Query: 3 PVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERA 62
P ++ KL GK P GVL+ GPPG GKTLLAKA+A EA + F ++ G + + M++G
Sbjct: 34 PSRFQKLGGK-IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASR 92
Query: 63 VRQCFQRARNSQPCVIFFDEIDALCPKRSS--LGDNNSSMRIVNQLLTEMDGFEGRGGVF 120
VR F++A+ + PC+IF DEIDA+ +R + G ++ + +NQ+L EMDGFEG G+
Sbjct: 93 VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 152
Query: 121 LMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKI 180
++AATNRPD++DPA++RPGRFDR + V LP+ + R++IL ++ + D+D I
Sbjct: 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---LAPDIDAAII 209
Query: 181 AADERCEGFSGADLEQLVKEA 201
A GFSGADL LV EA
Sbjct: 210 A--RGTPGFSGADLANLVNEA 228
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 131/201 (65%), Gaps = 8/201 (3%)
Query: 3 PVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERA 62
P K+ ++ G P G+LL GPPG GKTLLA+AVA EA + F + G + + +++G
Sbjct: 38 PSKFNRI-GARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAAR 96
Query: 63 VRQCFQRARNSQPCVIFFDEIDALCPKRSS--LGDNNSSMRIVNQLLTEMDGFEGRGGVF 120
VR F +A+ PC++F DEIDA+ R + G ++ + +NQLL EMDGF+ + G+
Sbjct: 97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156
Query: 121 LMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKI 180
+MAATNRPDI+DPA++RPGRFD+ + V+ P+ RK+IL T ++ + EDV+ + I
Sbjct: 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT---RNKPLAEDVNLEII 213
Query: 181 AADERCEGFSGADLEQLVKEA 201
A +R GF GADLE LV EA
Sbjct: 214 A--KRTPGFVGADLENLVNEA 232
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 8/201 (3%)
Query: 3 PVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERA 62
P K+ ++ G P G+LL GPPG G TLLA+AVA EA + F + G + + +++G
Sbjct: 38 PSKFNRI-GARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAAR 96
Query: 63 VRQCFQRARNSQPCVIFFDEIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGRGGVF 120
VR F +A+ PC++F DEIDA+ R + G ++ + +NQLL EMDGF+ + G+
Sbjct: 97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156
Query: 121 LMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKI 180
+MAATNRPDI+DPA++RPGRFD+ + V+ P+ RK+IL T ++ + EDV+ + I
Sbjct: 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT---RNKPLAEDVNLEII 213
Query: 181 AADERCEGFSGADLEQLVKEA 201
A +R GF GADLE LV EA
Sbjct: 214 A--KRTPGFVGADLENLVNEA 232
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/195 (46%), Positives = 124/195 (63%), Gaps = 10/195 (5%)
Query: 4 VKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESE 60
+K P F G P GVLL GPPG GKT LA+AVA EA + FI+ G + + M++G
Sbjct: 59 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 61 RAVRQCFQRARNSQPCVIFFDEIDALCPKRSS--LGDNNSSMRIVNQLLTEMDGFEGRGG 118
VR F+ A+ PC++F DEIDA+ KR S G N+ + +NQLL EMDGFE
Sbjct: 119 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178
Query: 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFD 178
+ +MAATNRPDI+DPA++RPGRFDR + ++ P+ + R++I L + +GK + EDVD
Sbjct: 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI-LRIHARGKP--LAEDVDLA 235
Query: 179 KIAADERCEGFSGAD 193
+A +R GF GAD
Sbjct: 236 LLA--KRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/195 (46%), Positives = 124/195 (63%), Gaps = 10/195 (5%)
Query: 4 VKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESE 60
+K P F G P GVLL GPPG GKT LA+AVA EA + FI+ G + + M++G
Sbjct: 50 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 109
Query: 61 RAVRQCFQRARNSQPCVIFFDEIDALCPKRSS--LGDNNSSMRIVNQLLTEMDGFEGRGG 118
VR F+ A+ PC++F DEIDA+ KR S G N+ + +NQLL EMDGFE
Sbjct: 110 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 169
Query: 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFD 178
+ +MAATNRPDI+DPA++RPGRFDR + ++ P+ + R++I L + +GK + EDVD
Sbjct: 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI-LRIHARGKP--LAEDVDLA 226
Query: 179 KIAADERCEGFSGAD 193
+A +R GF GAD
Sbjct: 227 LLA--KRTPGFVGAD 239
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 132/221 (59%), Gaps = 10/221 (4%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
P+K P++F G P GVLL GPPG GKTLLAKAVA G NFI +++ Y+GE
Sbjct: 199 LPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGE 258
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGD--NNSSMRIVNQLLTEMDGFEGR 116
S R +R+ F A+ +PC+IF DE+DA+ +R S G + R + +LLT+MDGF+
Sbjct: 259 SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318
Query: 117 GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
G ++ ATNRPD +DPA++RPGR DR + + LPNE R EI T + K GE
Sbjct: 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK--TGE--- 373
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD 217
FD AA + +GF+GAD+ EA AI + + + DD
Sbjct: 374 FDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDD 414
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/195 (46%), Positives = 124/195 (63%), Gaps = 10/195 (5%)
Query: 4 VKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESE 60
+K P F G P GVLL GPPG GKT LA+AVA EA + FI+ G + + M++G
Sbjct: 59 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 61 RAVRQCFQRARNSQPCVIFFDEIDALCPKRSS--LGDNNSSMRIVNQLLTEMDGFEGRGG 118
VR F+ A+ PC++F DEIDA+ KR S G N+ + +NQLL EMDGFE
Sbjct: 119 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178
Query: 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFD 178
+ +MAATNRPDI+DPA++RPGRFDR + ++ P+ + R++IL + +GK + EDVD
Sbjct: 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR-IHARGKP--LAEDVDLA 235
Query: 179 KIAADERCEGFSGAD 193
+A +R GF GAD
Sbjct: 236 LLA--KRTPGFVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/195 (46%), Positives = 124/195 (63%), Gaps = 10/195 (5%)
Query: 4 VKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESE 60
+K P F G P GVLL GPPG GKT LA+AVA EA + FI+ G + + M++G
Sbjct: 35 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 94
Query: 61 RAVRQCFQRARNSQPCVIFFDEIDALCPKRSS--LGDNNSSMRIVNQLLTEMDGFEGRGG 118
VR F+ A+ PC++F DEIDA+ KR S G N+ + +NQLL EMDGFE
Sbjct: 95 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154
Query: 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFD 178
+ +MAATNRPDI+DPA++RPGRFDR + ++ P+ + R++I L + +GK + EDVD
Sbjct: 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI-LRIHARGKP--LAEDVDLA 211
Query: 179 KIAADERCEGFSGAD 193
+A +R GF GAD
Sbjct: 212 LLA--KRTPGFVGAD 224
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 123/204 (60%), Gaps = 10/204 (4%)
Query: 2 FPVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESER 61
+P +Y L G P GVLL GPPG GKTLLAKAVA EA + F S+ G + M++G
Sbjct: 32 YPERYANL-GAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGAS 90
Query: 62 AVRQCFQRARNSQPCVIFFDEIDALCPKRSSLG---DNNSSMRIVNQLLTEMDGFEGRGG 118
VR F+ A+ P +IF DEIDA+ R++ G N+ + +NQLL EMDGF
Sbjct: 91 RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150
Query: 119 -VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDF 177
V ++AATNRP+I+DPA+MRPGRFDR + V+ P+ R EIL K K + DV+
Sbjct: 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK---LANDVNL 207
Query: 178 DKIAADERCEGFSGADLEQLVKEA 201
++A + G +GADL ++ EA
Sbjct: 208 QEVA--KLTAGLAGADLANIINEA 229
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 122/218 (55%), Gaps = 9/218 (4%)
Query: 4 VKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESE 60
+K P+ F G P G LL GPPGCGKTLLAKAVA EA + F+++ G E + + G
Sbjct: 25 LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGA 84
Query: 61 RAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLG---DNNSSMRIVNQLLTEMDGFEGRG 117
VR F+ AR PC+++ DEIDA+ KRS+ N + +NQLL EMDG
Sbjct: 85 ARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144
Query: 118 GVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDF 177
V ++A+TNR DI+D A+MRPGR DR +F++LP Q+R+EI + K + + F
Sbjct: 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREI---FEQHLKSLKLTQSSTF 201
Query: 178 DKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVEN 215
E GFSGAD+ + EA A E SV
Sbjct: 202 YSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 141/260 (54%), Gaps = 10/260 (3%)
Query: 281 ESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK-VEVKMDTTCTNLEFLEKGV-KVT 338
+S L R++ E+WS WS+ GGL+ + L HL+++ V V L +G KV+
Sbjct: 212 DSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVS 271
Query: 339 LNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNLLSSIEHVNVAVINLAYENIPMKQNA 398
L D +EA+HV+SA+PA L LL + L LS+I V+VAV+NL Y+ +
Sbjct: 272 LR-DSSLEADHVISAIPASVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHLPVQG 330
Query: 399 FGFLVPPREKLPILGVVFDSCCFEQADWTI----LTVMMGGAWYDTYFKGQ---SKEYIL 451
FG LVP E +LG+V+DS F + D + +TVM+GG+W T S+E
Sbjct: 331 FGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQ 390
Query: 452 DIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSS 511
A L + P V + K CIPQYTLGH +++ + ++ H+LPL L G+S
Sbjct: 391 QRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGAS 450
Query: 512 YDGVGVNDVIALSKKAVESI 531
Y+GV VND I ++A S+
Sbjct: 451 YEGVAVNDCIESGRQAAVSV 470
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
PVK+P+LF G + P GV+L GPPG GKTLLA+AVA+ FI V G EL+ Y+GE
Sbjct: 166 LPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGE 225
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKR--SSLGDNNSSMRIVNQLLTEMDGFEGR 116
R VR+ F AR P +IF DEID++ R S G ++ R + +LL ++DGFE
Sbjct: 226 GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285
Query: 117 GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
+ ++ ATNR DI+DPA++RPGR DR + P+ R EIL +++ + ++
Sbjct: 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN---LTRGIN 342
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD 217
K+A E+ G SGAD++ + EA A+ E V +D
Sbjct: 343 LRKVA--EKMNGCSGADVKGVCTEAGMYALRERRIHVTQED 381
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 115/199 (57%), Gaps = 6/199 (3%)
Query: 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQR 69
G P GVLL GPPG GKT+L KAVAN FI V G E ++ YLGE R VR F+
Sbjct: 201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRL 260
Query: 70 ARNSQPCVIFFDEIDALCPKR--SSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127
AR + P +IF DE+D++ KR + G + RI+ +LLT+MDGF+ V ++ ATNR
Sbjct: 261 ARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR 320
Query: 128 PDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCE 187
D +DPA++RPGR DR + P+ +DR+E L + + D D + R +
Sbjct: 321 ADTLDPALLRPGRLDR--KIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLII--RND 376
Query: 188 GFSGADLEQLVKEAREQAI 206
SGA + +++EA +A+
Sbjct: 377 SLSGAVIAAIMQEAGLRAV 395
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 133/239 (55%), Gaps = 14/239 (5%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
P+ P+ F G P G+LL GPPG GKTL A+AVAN FI V G EL+ Y+GE
Sbjct: 227 LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGE 286
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKR--SSLGDNNSSMRIVNQLLTEMDGFEGR 116
R VR+ F+ AR + C+IFFDEIDA+ R G +N R + +L+T++DGF+ R
Sbjct: 287 GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346
Query: 117 GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
G + +M ATNRP+ +DPA++RPGR DR + +LP+ + R I +K + +
Sbjct: 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS---VERGIR 403
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEIVN-SVENDDQAGIDDTEQVTIGFRHF 234
++ I+ C +GA+L + EA AI + E D +D +V G++ F
Sbjct: 404 WELIS--RLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVD---KVISGYKKF 457
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 148/264 (56%), Gaps = 15/264 (5%)
Query: 1 MFPVKYPKLFG--KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
++P+ P +F + P G+LL GPPG GKTL+ K +A+++G F S+ L + ++GE
Sbjct: 101 VWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGE 160
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDG--FEGR 116
E+ VR F AR QP VIF DEID+L +R G++ SS RI + L ++DG
Sbjct: 161 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSE 219
Query: 117 GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
+ ++ ATNRP ID A R R + L++ LP RK+I++ L + + + E++
Sbjct: 220 DRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI- 276
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236
++I ++ + FSGAD+ QL +EA L + S++ D A I + I + F+
Sbjct: 277 -EQIV--QQSDAFSGADMTQLCREAS----LGPIRSLQTADIATITPDQVRPIAYIDFEN 329
Query: 237 ALKRIKPSVSKADCKNYESLKQRY 260
A + ++PSVS D + YE+ + +
Sbjct: 330 AFRTVRPSVSPKDLELYENWNKTF 353
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 131/222 (59%), Gaps = 12/222 (5%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
P+ +P+L+ G P GV+L G PG GKTLLAKAVAN+ F+ + G EL+ YLG+
Sbjct: 200 LPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGD 259
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKR--SSLGDNNSSMRIVNQLLTEMDGFEGR 116
R RQ F+ A + P ++F DEIDA+ KR S+ G R + +LL ++DGF+ R
Sbjct: 260 GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319
Query: 117 GGVFLMAATNRPDIIDPAVMRPGRFDR-ILFVNLPNEQDRKEILLALTKQGKDPMMGEDV 175
G V ++ ATN+ + +DPA++RPGR DR ILF N P+ +K+IL T + + EDV
Sbjct: 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFEN-PDLSTKKKILGIHTSKMN---LSEDV 375
Query: 176 DFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD 217
+ + + + + SGAD++ + EA A+ E V +D
Sbjct: 376 NLETLVTTK--DDLSGADIQAMCTEAGLLALRERRMQVTAED 415
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 132/226 (58%), Gaps = 10/226 (4%)
Query: 1 MFPVKYPKLF-GKSTP-SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
+ PVK+P LF G P SG+LL GPPG GK+ LAKAVA EA F SV +L++ ++GE
Sbjct: 44 ILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 103
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF-EGRG 117
SE+ V+Q F AR ++P +IF DE+DAL R G++ +S RI +LL +M+G
Sbjct: 104 SEKLVKQLFAMARENKPSIIFIDEVDALTGTRGE-GESEASRRIKTELLVQMNGVGNDSQ 162
Query: 118 GVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDF 177
GV ++ ATN P +D A+ R RF+R +++ LP+ R + G P + D+
Sbjct: 163 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF--EINVGDTPCVLTKEDY 218
Query: 178 DKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDD 223
+ A EG+SG+D+ +VK+A Q I +I ++ D + DD
Sbjct: 219 RTLGA--MTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD 262
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 132/226 (58%), Gaps = 10/226 (4%)
Query: 1 MFPVKYPKLF-GKSTP-SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
+ PVK+P LF G P SG+LL GPPG GK+ LAKAVA EA F SV +L++ ++GE
Sbjct: 35 ILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 94
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF-EGRG 117
SE+ V+Q F AR ++P +IF D++DAL R G++ +S RI +LL +M+G
Sbjct: 95 SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGNDSQ 153
Query: 118 GVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDF 177
GV ++ ATN P +D A+ R RF+R +++ LP+ R + G P + D+
Sbjct: 154 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF--EINVGDTPCVLTKEDY 209
Query: 178 DKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDD 223
+ A EG+SG+D+ +VK+A Q I +I ++ D + DD
Sbjct: 210 RTLGA--MTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD 253
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 132/226 (58%), Gaps = 10/226 (4%)
Query: 1 MFPVKYPKLF-GKSTP-SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
+ PVK+P LF G P SG+LL GPPG GK+ LAKAVA EA F SV +L++ ++GE
Sbjct: 68 ILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 127
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRG- 117
SE+ V+Q F AR ++P +IF D++DAL R G++ +S RI +LL +M+G
Sbjct: 128 SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGNDSQ 186
Query: 118 GVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDF 177
GV ++ ATN P +D A+ R RF+R +++ LP+ R + G P + D+
Sbjct: 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF--EINVGDTPSVLTKEDY 242
Query: 178 DKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDD 223
+ A EG+SG+D+ +VK+A Q I +I ++ D + DD
Sbjct: 243 RTLGA--MTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD 286
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 143/259 (55%), Gaps = 19/259 (7%)
Query: 1 MFPVKYPKLF-GKSTPS-GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
+ P P+LF G P+ G+LL GPPG GKT+LAKAVA E+ F ++ L + Y+GE
Sbjct: 132 ILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGE 191
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDA-LCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRG 117
E+ VR F AR QP +IF D++D+ LC +R G++++S R+ + L E DG + G
Sbjct: 192 GEKLVRALFAVARELQPSIIFIDQVDSLLCERRE--GEHDASRRLKTEFLIEFDGVQSAG 249
Query: 118 G--VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALT-KQGKDPMMGED 174
V +M ATNRP +D AV+R RF + ++V+LPNE+ R +L L KQG E
Sbjct: 250 DDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKEL 307
Query: 175 VDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHF 234
++ +G+SG+DL L K+ A L + ++ + + +E I F
Sbjct: 308 AQLARM-----TDGYSGSDLTALAKD----AALGPIRELKPEQVKNMSASEMRNIRLSDF 358
Query: 235 DIALKRIKPSVSKADCKNY 253
+LK+IK SVS + Y
Sbjct: 359 TESLKKIKRSVSPQTLEAY 377
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 132/226 (58%), Gaps = 10/226 (4%)
Query: 1 MFPVKYPKLF-GKSTP-SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
+ PVK+P LF G P SG+LL GPPG GK+ LAKAVA EA F SV +L++ ++GE
Sbjct: 53 ILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 112
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF-EGRG 117
SE+ V+Q F AR ++P +IF D++DAL R G++ +S RI +LL +M+G
Sbjct: 113 SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGNDSQ 171
Query: 118 GVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDF 177
GV ++ ATN P +D A+ R RF+R +++ LP+ R + G P + D+
Sbjct: 172 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF--EINVGDTPCVLTKEDY 227
Query: 178 DKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDD 223
+ A EG+SG+D+ +VK+A Q I +I ++ D + DD
Sbjct: 228 RTLGA--MTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD 271
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 146/266 (54%), Gaps = 18/266 (6%)
Query: 1 MFPVKYPKLF-GKSTPS-GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
+ P P+LF G P+ G+LL GPPG GKTLLA+AVA E F+++ L + Y+G+
Sbjct: 38 ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGD 97
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGR-- 116
E+ VR F AR+ QP +IF DE+D+L S ++ +S R+ + L E DG G
Sbjct: 98 GEKLVRALFAVARHMQPSIIFIDEVDSLL-SERSSSEHEASRRLKTEFLVEFDGLPGNPD 156
Query: 117 -GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDV 175
+ ++AATNRP +D A +R RF + ++V+LP+EQ R+ +L L ++ P+ E +
Sbjct: 157 GDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEAL 214
Query: 176 -DFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHF 234
KI +G+SG+DL L K+ A LE + + + +D + I + F
Sbjct: 215 RRLAKI-----TDGYSGSDLTALAKD----AALEPIRELNVEQVKCLDISAMRAITEQDF 265
Query: 235 DIALKRIKPSVSKADCKNYESLKQRY 260
+LKRI+ SV+ +YE Q Y
Sbjct: 266 HSSLKRIRRSVAPQSLNSYEKWSQDY 291
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 10/222 (4%)
Query: 1 MFPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLG 57
+ P+K F G P G L+ GPPG GKTLLA+A A + F+ + P+L+ MY+G
Sbjct: 198 VLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257
Query: 58 ESERAVRQCFQRARNSQPCVIFFDEIDALCPKR--SSLGDNNSSMRIVNQLLTEMDGFEG 115
E + VR F A+ P +IF DE+DA+ KR S + R + +LL ++DGF
Sbjct: 258 EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317
Query: 116 RGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDV 175
V ++AATNR D++DPA++R GR DR + LP+E R +IL +++ +D+
Sbjct: 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM---TTDDDI 374
Query: 176 DFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD 217
++ ++A + F+GA L+ + EA A+ +SV+++D
Sbjct: 375 NWQELA--RSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHED 414
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 128/213 (60%), Gaps = 11/213 (5%)
Query: 1 MFPVKYPKLF-GKSTP-SGVLLCGPPGCGKTLLAKAVANEAG-INFISVKGPELLNMYLG 57
+ P+K+P LF GK TP G+LL GPPG GK+ LAKAVA EA F S+ +L++ +LG
Sbjct: 151 ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 210
Query: 58 ESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-GR 116
ESE+ V+ FQ AR ++P +IF DEID+LC RS ++ ++ RI + L +M G
Sbjct: 211 ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDN 269
Query: 117 GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
G+ ++ ATN P ++D A+ R RF++ +++ LP R + ++ + + D
Sbjct: 270 DGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT--EAD 325
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEI 209
F ++ + +G+SGAD+ +V++A Q + ++
Sbjct: 326 FQELG--RKTDGYSGADISIIVRDALMQPVRKV 356
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 128/213 (60%), Gaps = 11/213 (5%)
Query: 1 MFPVKYPKLF-GKSTP-SGVLLCGPPGCGKTLLAKAVANEAG-INFISVKGPELLNMYLG 57
+ P+K+P LF GK TP G+LL GPPG GK+ LAKAVA EA F S+ +L++ +LG
Sbjct: 29 ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 88
Query: 58 ESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-GR 116
ESE+ V+ FQ AR ++P +IF DEID+LC RS ++ ++ RI + L +M G
Sbjct: 89 ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDN 147
Query: 117 GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
G+ ++ ATN P ++D A+ R RF++ +++ LP R + ++ + + D
Sbjct: 148 DGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT--EAD 203
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEI 209
F ++ + +G+SGAD+ +V++A Q + ++
Sbjct: 204 FRELG--RKTDGYSGADISIIVRDALMQPVRKV 234
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 15/237 (6%)
Query: 294 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTL---NNDQHIEANHV 350
++ + +GGLQ +++ L L + V L + G ++ + + V
Sbjct: 229 ALSTFDGGLQVLIDALAASLGDAAHV--GARVEGLAREDGGWRLIIEEHGRRAELSVAQV 286
Query: 351 VSALPAPKLGMLLHKQHPTLGNLLSSIEHVNVAVINLAYE--NIPMKQNAFGFLVPPREK 408
V A PA LL L L++ I + +AV++L ++ +P + FGFLVP E+
Sbjct: 287 VLAAPAHATAKLLRPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAP-DGFGFLVPAEEQ 345
Query: 409 LPILGVVFDSCCF---EQADWTILTVMMGGAWYDTYFKGQSKEYILDIACRYVHEILDMP 465
+LG + S F + + + M+GGA + Q ++ + +A + + +
Sbjct: 346 RRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVE-QDEDALAALAREELKALAGVT 404
Query: 466 RTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLP-LYLTGSSYDGVGVNDVI 521
P V IPQY LGH RV I + +LP L+L G++Y GVG+ND I
Sbjct: 405 ARPSFTRVFRWPLGIPQYNLGHLERVAAIDAAL--QRLPGLHLIGNAYKGVGLNDCI 459
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06
A Resolution
Length = 475
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 11/244 (4%)
Query: 296 WSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIE-ANHVVSAL 354
S+E GL++++ L E L + E++++T L + + L D E A++V+ +
Sbjct: 229 LSLETGLESLIERLEEVL-ERSEIRLETPL--LAISREDGRYRLKTDHGPEYADYVLLTI 285
Query: 355 PAPKLGMLLHKQH-PTLGNLLSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILG 413
P P++ LL H P L L + H V + + + GF+V R I
Sbjct: 286 PHPQVVQLLPDAHLPELEQLTT---HSTATVTXIFDQQQSLPIEGTGFVVNRRAPYSITA 342
Query: 414 -VVFDSCCFEQA-DWTILTVMMGGAWYDTYFKGQSKEYILDIACRYVHEILDMPRTPHAQ 471
D A D T+L +G D + +S E + + + +I P
Sbjct: 343 CTAIDQKWNHSAPDHTVLRAFVGRPGND-HLVHESDEVLQQAVLQDLEKICGRTLEPKQV 401
Query: 472 HVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAVESI 531
+ L +P YT+GHA R++ ++ + +YL G +YDGVG+ D +A +K +ESI
Sbjct: 402 IISRLXDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGLPDCVASAKTXIESI 461
Query: 532 KWQH 535
+ +
Sbjct: 462 ELEQ 465
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 297 SVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALP- 355
++ GLQT+V + + L +V T T L + L+N ++A+ V+ P
Sbjct: 229 TLSTGLQTLVEEIEKQL-KLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPH 287
Query: 356 APKLGMLLHKQHPTLGNLLSSIEHVNVAVINLAYE--NIPMKQNAFGFLVPPREKLPILG 413
GML + P + +L ++ +VA + L + ++ M+ GF++ I
Sbjct: 288 KAAAGML--SELPAISHL-KNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAI-- 342
Query: 414 VVFDSCCFEQADW--------TILTVMMGGAWYDTYFKGQSKEYILDIACRYVHEILDMP 465
+C + W T+L +G A D S I++I + +++++
Sbjct: 343 ---TACTWTNKKWPHAAPEGKTLLRAYVGKAG-DESIVDLSDNDIINIVLEDLKKVMNIN 398
Query: 466 RTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSK 525
P V +PQY +GH R+K+++ + + +Y+TG+S++GVG+ D I K
Sbjct: 399 GEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGIPDCIDQGK 458
Query: 526 KAV 528
AV
Sbjct: 459 AAV 461
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-YLG-ESERAVRQCFQRAR 71
TP +L+ GP G GKT +A+ +A A FI V+ + + Y+G E + +R A
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAG 108
Query: 72 NS-----QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDG 112
+ Q ++F DEID +C K G + S + LL ++G
Sbjct: 109 GAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-YLGES-----ERAVRQCFQR 69
S +LL GP G GKTLLA+ +A + F L Y+GE ++ +++C
Sbjct: 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 111
Query: 70 ARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVN 104
+ +Q +++ D+ID + K DN S R V+
Sbjct: 112 VQKAQRGIVYIDQIDKISRK----SDNPSITRDVS 142
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-YLGES-----ERAVRQCFQR 69
S +LL GP G GKTLLA+ +A + F L Y+GE ++ +++C
Sbjct: 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 111
Query: 70 ARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVN 104
+ +Q +++ D+ID + K DN S R V+
Sbjct: 112 VQKAQRGIVYIDQIDKISRK----SDNPSITRDVS 142
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESE----RAVRQCFQRARNS 73
VLL GPP GKT LA +A E+ FI + P+ + +G SE +A+++ F A S
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM---IGFSETAKCQAMKKIFDDAYKS 122
Query: 74 QPCVIFFDEIDAL 86
Q + D+I+ L
Sbjct: 123 QLSCVVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESE----RAVRQCFQRARNS 73
VLL GPP GKT LA +A E+ FI + P+ + +G SE +A+++ F A S
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM---IGFSETAKCQAMKKIFDDAYKS 123
Query: 74 QPCVIFFDEIDAL 86
Q + D+I+ L
Sbjct: 124 QLSCVVVDDIERL 136
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-YLGES-ERAVRQCFQRA- 70
+ S +LL GP G GKTL+A+ +A I L Y+GE E + + Q +
Sbjct: 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 130
Query: 71 ---RNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVN 104
+ +Q ++F DEID K S L +N S R V+
Sbjct: 131 WNVQKAQKGIVFIDEID----KISRLSENRSITRDVS 163
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 4 VKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGPELLNMYLGESER 61
+K K+ G++ VLL GPPG GKT LA A+A E G + F + G E+ + + ++E
Sbjct: 56 IKSKKMAGRA----VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE- 110
Query: 62 AVRQCFQRA---RNSQPCVIFFDEIDALCP 88
+ + F+RA R + ++ E+ L P
Sbjct: 111 VLMENFRRAIGLRIKETKEVYEGEVTELTP 140
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 49
+LL GPPG GKT LA +A+E G+N GP
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP 72
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN--FISVKGPELLNMYLGESERAVRQCFQ 68
GK VL+ G PG GKT +A +A G + F ++ G E+ ++ + ++E A+ Q F+
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE-ALTQAFR 124
Query: 69 RA 70
R+
Sbjct: 125 RS 126
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 49
+LL GPPG GKT LA +A+E G+N GP
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP 72
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 49
+LL GPPG GKT LA +A+E G+N GP
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP 72
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 17 GVLLC--GPPGCGKTLLAKAVANEAGINFISVKGPELLN---------MYLGESERAVRQ 65
G +LC GPPG GKT LAK++A G F+ + + + Y+G + Q
Sbjct: 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQ 167
Query: 66 CFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSM 100
++A P V DEID + GD +S+M
Sbjct: 168 GMKKAGKLNP-VFLLDEIDKMSS--DFRGDPSSAM 199
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
VLL GPPG GKT LA +A+E N GP L+ G+ A+ +R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMA-AILTSLERG-----DV 105
Query: 78 IFFDEIDAL 86
+F DEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
VLL GPPG GKT LA +A+E N GP L+ G+ A+ +R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMA-AILTSLERG-----DV 105
Query: 78 IFFDEIDAL 86
+F DEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
VLL GPPG GKT LA +A+E N GP L+ G+ A+ +R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMA-AILTSLERG-----DV 105
Query: 78 IFFDEIDAL 86
+F DEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
VLL GPPG GKT LA +A+E N GP L+ G+ A+ +R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMA-AILTSLERG-----DV 105
Query: 78 IFFDEIDAL 86
+F DEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
VLL GPPG GKT LA +A+E N GP L+ G+ A+ +R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMA-AILTSLERG-----DV 105
Query: 78 IFFDEIDAL 86
+F DEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 4 VKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGPELLNMYLGESER 61
+K K G++ VLL GPPG GKT LA A+A E G + F G E+ + + ++E
Sbjct: 70 IKSKKXAGRA----VLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTE- 124
Query: 62 AVRQCFQRA 70
+ + F+RA
Sbjct: 125 VLXENFRRA 133
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
VLL GPPG G+T LA +A+E N GP L+ G+ A+ +R V
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMA-AILTSLERG-----DV 105
Query: 78 IFFDEIDAL 86
+F DEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN--FISVKGPELLNMYLGESERAVRQCFQ 68
GK VL+ G PG GKT +A A G + F ++ G E+ ++ ++E A+ Q F+
Sbjct: 81 GKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTE-ALTQAFR 139
Query: 69 RA 70
R+
Sbjct: 140 RS 141
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 56/269 (20%)
Query: 214 ENDDQAGIDDTEQVTIGF--RHF--DIALKRIKPSVSKADCKNYESLKQRYTTP------ 263
+N + + D+ + GF RHF ++ I P V+ + +SL ++ P
Sbjct: 138 KNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSXHHSFPELWNLE 197
Query: 264 --------GAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSN 315
GAI+ +S + + + R + +S GG QT+ + + + L
Sbjct: 198 KRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKR--QRGSFSFLGGXQTLTDAICKDL-- 253
Query: 316 KVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALP----------------AP-- 357
+ D N LE + + D I++ ++SA P AP
Sbjct: 254 ----REDELRLNSRVLE--LSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIXTAPLC 307
Query: 358 --KLGMLLHKQHPTLGNLLSSIEHVNVAVINLAY--ENIPMKQNAFGFLVPPREK---LP 410
K + + +P L N + +++V ++V+ + EN+ FG LVP +E+ L
Sbjct: 308 DVKSXKIAKRGNPFLLNFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLK 367
Query: 411 ILGVVFDSCCFEQA---DWTILTVMMGGA 436
LG +F S F + + T +GG+
Sbjct: 368 TLGTLFSSXXFPDRAPNNVYLYTTFVGGS 396
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 8/48 (16%)
Query: 4 VKYPKLFGK--STPSGVLLCGPPGCGKTLLA-KAVANEA-----GINF 43
+K+ K+F ++ G++LCGPPG GKT++ A+ N + GINF
Sbjct: 1035 IKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINF 1082
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 8/48 (16%)
Query: 4 VKYPKLFGK--STPSGVLLCGPPGCGKTLLA-KAVANEA-----GINF 43
+K+ K+F ++ G++LCGPPG GKT++ A+ N + GINF
Sbjct: 1254 IKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINF 1301
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
Length = 444
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-YLGE 58
TP +L+ GP G GKT +A+ +A A FI V+ + + Y+G+
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-YLGE 58
TP +L+ GP G GKT +A+ +A A FI V+ + + Y+G+
Sbjct: 48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 93
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-YLGE 58
TP +L+ GP G GKT +A+ +A A FI V+ + + Y+G+
Sbjct: 55 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 100
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-YLGE 58
TP +L+ GP G GKT +A+ +A A FI V+ + + Y+G+
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 17 GVLLCGPPGCGKTLLAKAVANEAGINFISV 46
+LL G PG GKT L K +A+++G+ +I+V
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
+LL G PG GKT L K +A+++G+ +I+V
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPC- 76
++L GPPG GKT LA+ +A A + + + + +R+ +RAR ++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 77 ---VIFFDEI 83
++F DE+
Sbjct: 106 RRTILFVDEV 115
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 8 KLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL-----------NMYL 56
++ + T + +L G PG GKT +A+ +A + I+ + PE+L Y
Sbjct: 194 EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ----IINNEVPEILRDKRVMTLDMGTKYR 249
Query: 57 GESERAVRQCFQRARNSQPCVIFFD-EIDA 85
GE E +++ R + ++F D IDA
Sbjct: 250 GEFEDRLKKVMDEIRQAGNIILFIDAAIDA 279
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 6 YPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQ 65
+ KL P + + G G GK+ + V + GIN I + EL + GE + +RQ
Sbjct: 27 FLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 86
Query: 66 CFQRA----RNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEM 110
++ A R C +F +++DA + + ++VN L +
Sbjct: 87 RYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 135
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-YLGE 58
TP +L GP G GKT +A+ +A A FI V+ + + Y+G+
Sbjct: 49 TPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 8 KLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL-----------NMYL 56
++ + T + +L G PG GKT +A+ +A + I+ + PE+L Y
Sbjct: 194 EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ----IINNEVPEILRDKRVMTLDMGTKYR 249
Query: 57 GESERAVRQCFQRARNSQPCVIFFD-EIDA 85
GE E +++ R + ++F D IDA
Sbjct: 250 GEFEDRLKKVMDEIRQAGNIILFIDAAIDA 279
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 93/245 (37%), Gaps = 41/245 (16%)
Query: 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRA 70
G +L GPPG GKT A VA E G + + ++ S+ + + A
Sbjct: 73 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV------RSKTLLNAGVKNA 126
Query: 71 RNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEG--RGGVFLMA----A 124
++ V +F K + N + V ++ E+DG G RGGV +A
Sbjct: 127 LDNMSVVGYF--------KHNEEAQNLNGKHFV-IIMDEVDGMSGGDRGGVGQLAQFCRK 177
Query: 125 TNRPDII-----DPAVMRPGRFDRILF---VNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
T+ P I+ + MRP FDR+ P+ K L+ + + E
Sbjct: 178 TSTPLILICNERNLPKMRP--FDRVCLDIQFRRPDANSIKSRLMTIA-------IREKFK 228
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236
D D + G D+ Q++ + + EN ++ I + I + FDI
Sbjct: 229 LDPNVIDRLIQTTRG-DIRQVINLLSTISTTTKTINHENINE--ISKAWEKNIALKPFDI 285
Query: 237 ALKRI 241
A K +
Sbjct: 286 AHKML 290
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 18 VLLCGPPGCGKTLLAKAVANE------AGINFISVKGPELL 52
++LCGPPG GKT+ + +NF S PELL
Sbjct: 1307 LILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELL 1347
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 18 VLLCGPPGCGKTLLAKAVANE------AGINFISVKGPELL 52
++LCGPPG GKT+ + +NF S PELL
Sbjct: 1307 LILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELL 1347
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 8 KLFGKSTPSGVLLCGPPGCGKTLLAKAVANE----------AGINFISVKGPELL--NMY 55
++ + T + +L G PG GKT + + +A G +S++ LL Y
Sbjct: 47 QILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY 106
Query: 56 LGESERAVRQCFQRARNSQPCVIFF-DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE 114
GE E ++ Q SQ VI F DE+ + G ++ N L +
Sbjct: 107 RGEFEERLKAVIQEVVQSQGEVILFIDELHTVV----GAGKAEGAVDAGNMLKPAL---- 158
Query: 115 GRGGVFLMAATN----RPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQ 165
RG + L+ AT R DPA+ R RF + +V+ P ++ IL L ++
Sbjct: 159 ARGELRLIGATTLDEYREIEKDPALER--RFQPV-YVDEPTVEETISILRGLKEK 210
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 33/160 (20%)
Query: 18 VLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRARN 72
+L GPPG GKT A A+A + NFI + + + + VR +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDV------VRHKIKEFAR 94
Query: 73 SQPC------VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN 126
+ P +IF DE DAL D +++R ++ + + F+++
Sbjct: 95 TAPIGGAPFKIIFLDEADALT------ADAQAALRRTMEMYS-------KSCRFILSCNY 141
Query: 127 RPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQG 166
II+P R F F +P E +K +L K+G
Sbjct: 142 VSRIIEPIQSRCAVFR---FKPVPKEAMKKRLLEICEKEG 178
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 8 KLFGKSTPSGVLLCGPPGCGKTLLAKAVANE----------AGINFISVKGPELL--NMY 55
++ + T + +L G PG GKT + + +A G +S++ LL Y
Sbjct: 184 QILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY 243
Query: 56 LGESERAVRQCFQRARNSQPCVIFF-DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE 114
GE E ++ Q SQ VI F DE+ + G ++ N L +
Sbjct: 244 RGEFEERLKAVIQEVVQSQGEVILFIDELHTVV----GAGKAEGAVDAGNMLKPAL---- 295
Query: 115 GRGGVFLMAATN----RPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQ 165
RG + L+ AT R DPA+ R RF + +V+ P ++ IL L ++
Sbjct: 296 ARGELRLIGATTLDEYREIEKDPALER--RFQPV-YVDEPTVEETISILRGLKEK 347
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 33/160 (20%)
Query: 18 VLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRARN 72
+L GPPG GKT A A+A + NFI + + + + VR +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDV------VRHKIKEFAR 94
Query: 73 SQPC------VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN 126
+ P +IF DE DAL D +++R ++ + + F+++
Sbjct: 95 TAPIGGAPFKIIFLDEADALT------ADAQAALRRTMEMYS-------KSCRFILSCNY 141
Query: 127 RPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQG 166
II+P R F F +P E +K +L K+G
Sbjct: 142 VSRIIEPIQSRCAVFR---FKPVPKEAMKKRLLEICEKEG 178
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRAR--N 72
P +L PG GKT +AKA+ ++ + + V G + ++ R F A +
Sbjct: 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV----RGPLTNFASAASFD 103
Query: 73 SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIID 132
+ VI DE D RS L ++ +R + M+ + + ++ A N II
Sbjct: 104 GRQKVIVIDEFD-----RSGLAESQRHLR------SFMEAYSSNCSI-IITANNIDGIIK 151
Query: 133 PAVMRPGRFDRILFVNLPNEQDRKEILLALTKQ 165
P R R++ P ++D+ E++ + ++
Sbjct: 152 PLQSRC----RVITFGQPTDEDKIEMMKQMIRR 180
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
+L GP G GKT LA ++ E N + P + E++ S+ +
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI--------EKSGDLAAILTNLSEGDI 109
Query: 78 IFFDEIDALCP 88
+F DEI L P
Sbjct: 110 LFIDEIHRLSP 120
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 20 LCGPPGCGKTLLAKAVAN 37
+CGP GCGK+ L +A+AN
Sbjct: 460 ICGPNGCGKSTLXRAIAN 477
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 20 LCGPPGCGKTLLAKAVAN 37
+CGP GCGK+ L +A+AN
Sbjct: 466 ICGPNGCGKSTLXRAIAN 483
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 20 LCGPPGCGKTLLAKAVAN 37
+CGP GCGK+ L +A+AN
Sbjct: 466 ICGPNGCGKSTLMRAIAN 483
>pdb|1CC1|L Chain L, Crystal Structure Of A Reduced, Active Form Of The
Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
Length = 498
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 456 RYVHEILDM--PRTPHAQHVEILKAC-IPQY--TLGHAARVKDIQGYIDTHQLPL-YLTG 509
R HE++ M R PH Q + + A IP +AAR K++Q ++ LPL Y G
Sbjct: 173 RICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEYAARFKEVQKFVIEEYLPLIYTLG 232
Query: 510 SSY-----DGVGVNDVIAL 523
S Y G+G +VIA
Sbjct: 233 SVYTDLFETGIGWKNVIAF 251
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 18 VLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRARN 72
+L GPPG GKT A A+A E NF+ LN +R+ +
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLE------LNASDERGINVIREKVKEFAR 102
Query: 73 SQPC------VIFFDEIDALC 87
++P +IF DE DAL
Sbjct: 103 TKPIGGASFKIIFLDEADALT 123
>pdb|3TQP|A Chain A, Structure Of An Enolase (Eno) From Coxiella Burnetii
pdb|3TQP|B Chain B, Structure Of An Enolase (Eno) From Coxiella Burnetii
Length = 428
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 279 YEESELYRRSRIEKWSVW-------SVEGGLQ----TIVNTLGEHLSNKVE-VKMDTTCT 326
+E ++L I++ + W S+E GL L E L NKV+ V D T
Sbjct: 258 FENNQLTSEEXIDRLTEWTKKYPVISIEDGLSENDWAGWKLLTERLENKVQLVGDDIFVT 317
Query: 327 NLEFLEKGVKVTLNNDQHIEANHV 350
N + LEKG+K + N ++ N +
Sbjct: 318 NPDILEKGIKKNIANAILVKLNQI 341
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISV 46
S P + L GP GKT LA A+A+ ISV
Sbjct: 3 SLPPAIFLMGPTAAGKTDLAMALADALPCELISV 36
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 319 VKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLH--KQHPTLGNLLSS 376
VK++ ++ + V V N + EA +V+SA+P P LGM +H P + N + +
Sbjct: 228 VKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIP-PTLGMKIHFNPPLPMMRNQMIT 286
Query: 377 IEHVNVAVINLAYENIPM--KQNAFGFLVPPREKLPILGVVFDS 418
+ + + Y P K++ G ++ E+ P+ + D+
Sbjct: 287 RVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAATLDDT 330
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 23 PPGCGKTLLAKAVANEA-GINFISVKGPELLN 53
PPG + L+A+AVA EA G+ F PE L
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSVASNPEFLR 178
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 293 WSVWSVE--GGLQTIVNTL-----------GEHLSNKV------EVKMDTTCTNLEFLEK 333
W +W V+ GG I++T +S ++ VK++ ++ +
Sbjct: 184 WFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRE 243
Query: 334 GVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHP 368
V V N + EA +V+SA+P P LGM +H P
Sbjct: 244 NVLVETLNHEMYEAKYVISAIP-PTLGMKIHFNPP 277
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 298 VEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPA- 356
V GG+Q + + E L + +V ++ +++ E G V + D +EA+ V+ A+P
Sbjct: 210 VIGGMQQVSIRMAEALGD--DVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPN 267
Query: 357 --------PKLGMLLHK--QHPTLG 371
P L H+ QH +LG
Sbjct: 268 LYSRISYDPPLPRRQHQMHQHQSLG 292
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 293 WSVWSVE--GGLQTIVNTL-----------GEHLSNKV------EVKMDTTCTNLEFLEK 333
W +W V+ GG I++T +S ++ VK++ ++ +
Sbjct: 183 WFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRE 242
Query: 334 GVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHP 368
V V N + EA +V+SA+P P LGM +H P
Sbjct: 243 NVLVETLNHEMYEAKYVISAIP-PTLGMKIHFNPP 276
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 293 WSVWSVE--GGLQTIVNTL-----------GEHLSNKV------EVKMDTTCTNLEFLEK 333
W +W V+ GG I++T +S ++ VK++ ++ +
Sbjct: 184 WFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRE 243
Query: 334 GVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHP 368
V V N + EA +V+SA+P P LGM +H P
Sbjct: 244 NVLVETLNHEMYEAKYVISAIP-PTLGMKIHFNPP 277
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 319 VKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHP 368
VK++ ++ + V V N + EA +V+SA+P P LGM +H P
Sbjct: 229 VKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIP-PTLGMKIHFNPP 277
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 298 VEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPA- 356
V GG+Q + + E L + +V ++ +++ E G V + D +EA+ V+ A+P
Sbjct: 210 VIGGMQQVSIRMAEALGD--DVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPN 267
Query: 357 --------PKLGMLLHK--QHPTLG 371
P L H+ QH +LG
Sbjct: 268 LYSRISYDPPLPRRQHQMHQHQSLG 292
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 319 VKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHP 368
VK++ ++ + V V N + EA +V+SA+P P LGM +H P
Sbjct: 229 VKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIP-PTLGMKIHFNPP 277
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 293 WSVWSVE--GGLQTIVNTL-----------GEHLSNKV------EVKMDTTCTNLEFLEK 333
W +W V+ GG I++T +S ++ VK++ ++ +
Sbjct: 184 WFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRE 243
Query: 334 GVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHP 368
V V N + EA +V+SA+P P LGM +H P
Sbjct: 244 NVLVETLNHEMYEAKYVISAIP-PTLGMKIHFNPP 277
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 298 VEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPA- 356
V GG+Q + + E L + +V ++ +++ E G V + D +EA+ V+ A+P
Sbjct: 210 VIGGMQQVSIRMAEALGD--DVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPN 267
Query: 357 --------PKLGMLLHK--QHPTLG 371
P L H+ QH +LG
Sbjct: 268 LYSRISYDPPLPRRQHQMHQHQSLG 292
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 319 VKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHP 368
VK++ ++ + V V N + EA +V+SA+P P LGM +H P
Sbjct: 229 VKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIP-PTLGMKIHFNPP 277
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 298 VEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPA- 356
V GG+Q + + E L + +V ++ +++ E G V + D +EA+ V+ A+P
Sbjct: 210 VIGGMQQVSIRMAEALGD--DVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPN 267
Query: 357 --------PKLGMLLHK--QHPTLG 371
P L H+ QH +LG
Sbjct: 268 LYSRISYDPPLPRRQHQMHQHQSLG 292
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 319 VKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHP 368
VK++ ++ + V V N + EA +V+SA+P P LGM +H P
Sbjct: 229 VKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIP-PTLGMKIHFNPP 277
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis
Adenylate Kinase
Length = 181
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
VLL GPPG GK A +A + GI IS
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQIST 31
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Adenylate Kinase Complexed With Two Molecules Of Adp
And Mg
Length = 201
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
VLL GPPG GK A +A + GI IS
Sbjct: 23 VLLLGPPGAGKGTQAVKLAEKLGIPQIST 51
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 21/93 (22%)
Query: 8 KLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFI------SVKGPELLNM------- 54
++ + T + +L G PG GKT + + +A I + S+KG +L+++
Sbjct: 36 QILSRRTKNNPILLGDPGVGKTAIVEGLA----IKIVQGDVPDSLKGRKLVSLDLSSLIA 91
Query: 55 ---YLGESERAVRQCFQRARNSQ-PCVIFFDEI 83
Y G+ E ++ + ++++ V+F DEI
Sbjct: 92 GAKYRGDFEERLKSILKEVQDAEGQVVMFIDEI 124
>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
Length = 484
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 2 FPVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGES-E 60
+P +Y K F T S L+ +L + +E G+N + PE L+ L +S E
Sbjct: 50 YPAEYVKTFEYDTISWALVVE-----TDMLFSGLGSEFGLNISQIIDPETLDKILSKSRE 104
Query: 61 RAVRQCFQR 69
R + + F R
Sbjct: 105 RLIDETFSR 113
>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
Length = 479
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 2 FPVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGES-E 60
+P +Y K F T S L+ +L + +E G+N + PE L+ L +S E
Sbjct: 50 YPAEYVKTFEYDTISWALVVE-----TDMLFSGLGSEFGLNISQIIDPETLDKILSKSRE 104
Query: 61 RAVRQCFQR 69
R + + F R
Sbjct: 105 RLIDETFSR 113
>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
Length = 475
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 2 FPVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGES-E 60
+P +Y K F T S L+ +L + +E G+N + PE L+ L +S E
Sbjct: 50 YPAEYVKTFEYDTISWALVVE-----TDMLFSGLGSEFGLNISQIIDPETLDKILSKSRE 104
Query: 61 RAVRQCFQR 69
R + + F R
Sbjct: 105 RLIDETFSR 113
>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
Length = 475
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 2 FPVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGES-E 60
+P +Y K F T S L+ +L + +E G+N + PE L+ L +S E
Sbjct: 50 YPAEYVKTFEYDTISWALVVE-----TDMLFSGLGSEFGLNISQIIDPETLDKILSKSRE 104
Query: 61 RAVRQCFQR 69
R + + F R
Sbjct: 105 RLIDETFSR 113
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate
Kinase From Agrobacterium Tumefaciens, Northeast
Structural Genomics Target Atr62
Length = 191
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGI 41
+LL G PG GK+ +A+A+AN G+
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGV 35
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition
By Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition
By Mda5
Length = 699
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 4 VKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANE 38
V P L GK+ +++C P GCGKT +A +A +
Sbjct: 15 VAQPALEGKN----IIICLPTGCGKTRVAVYIAKD 45
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 337 VTLNNDQHIEANHVVSALPAPKLG--MLLHKQHPTLGNLLSSIEHVNVAVINLAYENIPM 394
V + N Q E V A + G + HK++P ++ I V I AYEN+P+
Sbjct: 238 VEIRNLQKTETREVEEAFAKGQKGSSAMPHKRNPIGSENITGISRVIRGYITTAYENVPL 297
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 146 FVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQA 205
F+ +EQ KE L LTKQG + +G V ++ + F+ A+ EQ KE ++
Sbjct: 215 FLPAADEQIAKEALKVLTKQGLNIRLGARVTASEVKKKQVTVTFTDANGEQ--KETFDKL 272
Query: 206 ILEI 209
I+ +
Sbjct: 273 IVAV 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,355,798
Number of Sequences: 62578
Number of extensions: 683937
Number of successful extensions: 1959
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1785
Number of HSP's gapped (non-prelim): 136
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)