Query psy7673
Match_columns 541
No_of_seqs 386 out of 4263
Neff 10.0
Searched_HMMs 46136
Date Sat Aug 17 00:29:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 2.5E-43 5.4E-48 343.2 24.4 260 1-262 528-790 (802)
2 COG1222 RPT1 ATP-dependent 26S 100.0 4.9E-43 1.1E-47 322.7 21.4 221 2-243 169-394 (406)
3 KOG0730|consensus 100.0 4.8E-42 1E-46 339.4 21.6 239 1-259 451-692 (693)
4 KOG0733|consensus 100.0 3.6E-40 7.9E-45 321.2 23.3 205 4-214 209-420 (802)
5 KOG0738|consensus 100.0 2.3E-40 5E-45 306.8 19.6 255 1-262 229-490 (491)
6 KOG0736|consensus 100.0 1.2E-38 2.6E-43 318.3 24.8 255 2-261 690-952 (953)
7 COG1223 Predicted ATPase (AAA+ 100.0 6.3E-36 1.4E-40 262.9 16.9 218 4-244 140-358 (368)
8 KOG0734|consensus 100.0 6.4E-36 1.4E-40 287.1 17.5 216 4-241 323-541 (752)
9 KOG0739|consensus 100.0 2.2E-35 4.9E-40 264.2 14.6 256 1-263 150-438 (439)
10 TIGR01243 CDC48 AAA family ATP 100.0 5.3E-34 1.1E-38 308.1 26.9 256 2-262 471-731 (733)
11 KOG0737|consensus 100.0 3.4E-34 7.4E-39 266.2 17.6 254 1-262 109-382 (386)
12 KOG0728|consensus 100.0 2.4E-33 5.3E-38 245.3 18.6 221 2-243 165-390 (404)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 8E-33 1.7E-37 279.2 24.7 230 9-260 253-484 (489)
14 PTZ00454 26S protease regulato 100.0 1.4E-32 3.1E-37 271.9 21.9 221 2-243 163-388 (398)
15 KOG0735|consensus 100.0 1.9E-32 4.2E-37 271.5 22.4 247 1-260 684-935 (952)
16 KOG0727|consensus 100.0 9.9E-33 2.1E-37 241.8 17.3 219 2-241 173-396 (408)
17 KOG1276|consensus 100.0 1.5E-31 3.3E-36 252.0 26.1 245 287-531 233-489 (491)
18 TIGR00562 proto_IX_ox protopor 100.0 1.5E-31 3.2E-36 277.6 28.6 238 294-533 216-458 (462)
19 PRK03992 proteasome-activating 100.0 5.8E-32 1.3E-36 269.7 21.8 224 2-246 149-377 (389)
20 KOG0731|consensus 100.0 4.2E-32 9.2E-37 277.6 19.9 221 4-244 330-556 (774)
21 KOG0652|consensus 100.0 2.3E-32 5.1E-37 240.5 15.1 220 1-242 188-413 (424)
22 KOG0730|consensus 100.0 1.1E-31 2.4E-36 266.2 20.6 245 2-313 202-450 (693)
23 COG0464 SpoVK ATPases of the A 100.0 1.5E-31 3.2E-36 277.9 22.6 226 2-246 260-488 (494)
24 KOG0726|consensus 100.0 2E-32 4.3E-37 244.6 12.9 219 2-241 203-426 (440)
25 KOG0729|consensus 100.0 9.8E-32 2.1E-36 237.3 14.4 220 2-242 195-419 (435)
26 PTZ00361 26 proteosome regulat 100.0 5.4E-31 1.2E-35 261.9 19.9 221 2-243 201-426 (438)
27 KOG0740|consensus 100.0 1.3E-31 2.8E-36 258.9 14.5 253 1-263 170-426 (428)
28 PRK12416 protoporphyrinogen ox 100.0 5.6E-30 1.2E-34 265.3 27.8 236 294-533 217-459 (463)
29 PLN02576 protoporphyrinogen ox 100.0 2.1E-29 4.6E-34 263.5 28.8 240 293-534 229-486 (496)
30 COG1232 HemY Protoporphyrinoge 100.0 2.8E-29 6.1E-34 248.3 26.0 233 294-532 206-443 (444)
31 COG0465 HflB ATP-dependent Zn 100.0 2.7E-30 5.9E-35 260.3 17.4 218 4-242 169-391 (596)
32 TIGR01241 FtsH_fam ATP-depende 100.0 7.4E-30 1.6E-34 263.9 20.1 218 5-243 75-297 (495)
33 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.5E-29 3.3E-34 276.3 21.1 210 8-242 1623-1878(2281)
34 KOG0651|consensus 100.0 2E-30 4.3E-35 234.2 11.5 221 2-243 150-375 (388)
35 TIGR01242 26Sp45 26S proteasom 100.0 6E-29 1.3E-33 247.7 22.3 219 2-241 140-363 (364)
36 CHL00176 ftsH cell division pr 100.0 3.9E-29 8.4E-34 260.4 19.8 216 5-241 203-423 (638)
37 KOG0741|consensus 100.0 6.9E-30 1.5E-34 245.6 12.0 241 2-245 243-494 (744)
38 TIGR03689 pup_AAA proteasome A 100.0 1.6E-28 3.4E-33 247.3 22.1 228 2-241 200-478 (512)
39 PLN00020 ribulose bisphosphate 100.0 1.8E-27 4E-32 224.0 22.9 172 8-188 141-330 (413)
40 PRK11883 protoporphyrinogen ox 100.0 9.9E-27 2.1E-31 241.1 29.1 234 295-533 213-450 (451)
41 TIGR01243 CDC48 AAA family ATP 100.0 4.1E-27 9E-32 254.6 26.4 237 2-244 196-438 (733)
42 PRK10733 hflB ATP-dependent me 100.0 1.5E-27 3.2E-32 252.1 21.7 214 10-244 180-395 (644)
43 KOG0732|consensus 99.9 2.1E-27 4.5E-32 249.6 16.0 240 1-246 282-530 (1080)
44 KOG0736|consensus 99.9 1.2E-24 2.6E-29 218.5 20.0 264 2-313 418-688 (953)
45 COG3380 Predicted NAD/FAD-depe 99.9 4.2E-26 9.1E-31 202.7 7.3 222 296-535 101-330 (331)
46 PLN03000 amine oxidase 99.9 2.2E-23 4.7E-28 220.2 23.4 229 295-534 373-622 (881)
47 KOG0735|consensus 99.9 2.6E-23 5.7E-28 207.0 19.7 248 12-313 428-683 (952)
48 PLN02328 lysine-specific histo 99.9 7.1E-23 1.5E-27 216.7 23.4 229 295-534 429-678 (808)
49 PLN02529 lysine-specific histo 99.9 1.9E-22 4E-27 212.8 22.6 228 295-533 349-596 (738)
50 PLN02268 probable polyamine ox 99.9 5.2E-22 1.1E-26 204.3 22.4 226 296-534 194-433 (435)
51 PLN02976 amine oxidase 99.9 4.2E-22 9.1E-27 215.6 21.8 229 295-534 928-1185(1713)
52 PLN02676 polyamine oxidase 99.9 4.9E-21 1.1E-25 197.3 21.5 229 299-534 220-472 (487)
53 PLN02568 polyamine oxidase 99.9 6.3E-21 1.4E-25 197.7 21.6 237 295-533 234-533 (539)
54 COG1231 Monoamine oxidase [Ami 99.9 5.9E-21 1.3E-25 184.3 19.5 232 295-535 201-447 (450)
55 PF01593 Amino_oxidase: Flavin 99.9 2.2E-21 4.8E-26 200.6 17.6 229 299-532 208-450 (450)
56 PRK07233 hypothetical protein; 99.9 1.5E-20 3.2E-25 194.1 23.4 229 295-533 190-429 (434)
57 TIGR03467 HpnE squalene-associ 99.9 1E-20 2.2E-25 194.3 21.2 222 295-532 188-418 (419)
58 PF00004 AAA: ATPase family as 99.8 2.3E-20 5.1E-25 158.8 13.0 129 18-148 1-131 (132)
59 PRK07208 hypothetical protein; 99.8 4.9E-19 1.1E-23 184.6 25.3 236 295-535 210-461 (479)
60 KOG0742|consensus 99.8 1.9E-19 4.2E-24 168.9 15.1 206 12-240 381-611 (630)
61 KOG0744|consensus 99.8 6.9E-20 1.5E-24 167.1 9.6 207 13-240 175-413 (423)
62 CHL00181 cbbX CbbX; Provisiona 99.8 1.3E-18 2.9E-23 165.9 17.5 208 14-236 58-281 (287)
63 TIGR02881 spore_V_K stage V sp 99.8 1.5E-18 3.3E-23 164.9 17.1 185 14-212 41-245 (261)
64 TIGR02880 cbbX_cfxQ probable R 99.8 1.3E-17 2.8E-22 159.4 17.1 208 14-237 57-281 (284)
65 PLN02612 phytoene desaturase 99.8 1.9E-17 4.1E-22 174.0 19.4 225 299-534 303-547 (567)
66 TIGR02732 zeta_caro_desat caro 99.8 2.1E-17 4.6E-22 170.3 17.6 227 296-532 211-474 (474)
67 TIGR02731 phytoene_desat phyto 99.7 1E-16 2.2E-21 165.9 21.3 218 302-531 212-452 (453)
68 PLN02487 zeta-carotene desatur 99.7 1.4E-16 3E-21 165.3 21.9 233 295-534 286-552 (569)
69 KOG0743|consensus 99.7 2.6E-17 5.6E-22 158.5 14.9 176 9-197 229-412 (457)
70 PF05496 RuvB_N: Holliday junc 99.7 6.2E-17 1.3E-21 143.5 14.6 162 13-201 48-225 (233)
71 COG2256 MGS1 ATPase related to 99.7 2.4E-16 5.1E-21 149.2 14.7 128 11-164 44-177 (436)
72 KOG0685|consensus 99.7 1.6E-16 3.5E-21 153.6 12.7 233 296-533 216-489 (498)
73 TIGR02639 ClpA ATP-dependent C 99.7 4.4E-16 9.6E-21 168.4 17.0 226 10-259 198-451 (731)
74 TIGR00763 lon ATP-dependent pr 99.7 1.7E-15 3.6E-20 164.7 18.3 210 13-239 345-584 (775)
75 COG2255 RuvB Holliday junction 99.7 1.7E-15 3.6E-20 136.8 14.8 206 12-260 49-273 (332)
76 PRK00080 ruvB Holliday junctio 99.7 2.5E-15 5.3E-20 147.9 16.6 189 12-243 48-252 (328)
77 COG0464 SpoVK ATPases of the A 99.6 2.6E-14 5.6E-19 149.0 23.8 225 2-244 2-229 (494)
78 PRK11034 clpA ATP-dependent Cl 99.6 2.7E-15 5.9E-20 159.9 15.8 209 10-243 202-435 (758)
79 KOG0029|consensus 99.6 7.5E-15 1.6E-19 149.8 17.1 227 296-534 212-458 (501)
80 TIGR00635 ruvB Holliday juncti 99.6 1E-14 2.2E-19 142.7 17.6 186 13-241 28-229 (305)
81 PRK07003 DNA polymerase III su 99.6 2.1E-14 4.5E-19 148.4 19.2 166 11-204 34-227 (830)
82 PRK14956 DNA polymerase III su 99.6 1.1E-14 2.4E-19 145.1 15.6 164 12-203 37-228 (484)
83 PRK00149 dnaA chromosomal repl 99.6 9.1E-15 2E-19 150.0 15.2 192 15-241 148-349 (450)
84 PRK00411 cdc6 cell division co 99.6 4.1E-14 8.9E-19 143.8 18.9 202 13-243 53-284 (394)
85 TIGR00362 DnaA chromosomal rep 99.6 1.3E-14 2.8E-19 147.1 15.1 191 15-241 136-337 (405)
86 PRK12323 DNA polymerase III su 99.6 9.8E-15 2.1E-19 148.9 13.7 165 11-203 34-231 (700)
87 TIGR02928 orc1/cdc6 family rep 99.6 7.4E-14 1.6E-18 140.4 19.4 202 13-242 38-275 (365)
88 TIGR03345 VI_ClpV1 type VI sec 99.6 3.6E-14 7.8E-19 154.4 17.9 184 11-207 204-412 (852)
89 COG0466 Lon ATP-dependent Lon 99.6 3E-14 6.4E-19 144.3 14.8 140 12-163 347-508 (782)
90 PRK14088 dnaA chromosomal repl 99.6 1.8E-14 3.8E-19 146.2 13.2 193 15-241 130-332 (440)
91 PF05673 DUF815: Protein of un 99.6 4.1E-14 9E-19 127.5 13.7 170 11-200 48-244 (249)
92 PTZ00112 origin recognition co 99.6 7.4E-14 1.6E-18 144.9 16.5 198 9-242 775-1007(1164)
93 PRK14086 dnaA chromosomal repl 99.6 5.2E-14 1.1E-18 144.2 15.1 193 16-243 315-517 (617)
94 PRK14960 DNA polymerase III su 99.6 6.4E-14 1.4E-18 143.4 15.6 165 11-203 33-225 (702)
95 PRK12422 chromosomal replicati 99.6 5.1E-14 1.1E-18 142.4 14.5 195 14-241 140-343 (445)
96 COG1474 CDC6 Cdc6-related prot 99.6 1.9E-13 4.1E-18 134.3 17.8 210 12-251 39-275 (366)
97 PRK06893 DNA replication initi 99.5 8.7E-14 1.9E-18 129.2 14.3 184 14-239 38-228 (229)
98 PRK07994 DNA polymerase III su 99.5 3E-13 6.4E-18 140.7 19.6 164 12-203 35-226 (647)
99 TIGR00390 hslU ATP-dependent p 99.5 1.4E-13 2.9E-18 134.0 15.6 156 74-241 247-430 (441)
100 PRK13342 recombination factor 99.5 2.6E-13 5.7E-18 137.5 18.3 179 13-241 34-219 (413)
101 PRK14962 DNA polymerase III su 99.5 1.4E-13 3E-18 139.9 16.1 183 11-241 32-242 (472)
102 TIGR02733 desat_CrtD C-3',4' d 99.5 2.8E-13 6.1E-18 141.6 18.6 232 294-533 223-490 (492)
103 PRK14087 dnaA chromosomal repl 99.5 1E-13 2.3E-18 140.6 14.6 196 15-242 141-349 (450)
104 KOG2004|consensus 99.5 1.1E-13 2.3E-18 139.5 14.2 143 11-165 434-598 (906)
105 PRK06645 DNA polymerase III su 99.5 3.4E-13 7.3E-18 137.5 17.9 186 11-241 39-256 (507)
106 PRK08727 hypothetical protein; 99.5 2.4E-13 5.3E-18 126.5 15.3 182 14-240 40-230 (233)
107 TIGR02902 spore_lonB ATP-depen 99.5 1.5E-13 3.2E-18 142.8 15.2 191 13-240 84-331 (531)
108 PRK10787 DNA-binding ATP-depen 99.5 2.8E-13 6E-18 145.9 17.7 206 13-241 347-582 (784)
109 PRK05342 clpX ATP-dependent pr 99.5 3.3E-13 7.3E-18 134.5 17.0 211 14-235 107-399 (412)
110 PRK08084 DNA replication initi 99.5 2.4E-13 5.2E-18 126.7 15.0 182 14-239 44-234 (235)
111 PRK14949 DNA polymerase III su 99.5 6.7E-13 1.4E-17 140.1 19.5 169 12-202 35-225 (944)
112 TIGR03420 DnaA_homol_Hda DnaA 99.5 1E-13 2.2E-18 129.5 12.1 183 12-238 35-225 (226)
113 PRK10865 protein disaggregatio 99.5 1.8E-13 3.9E-18 149.5 15.7 184 10-204 194-400 (857)
114 PRK05642 DNA replication initi 99.5 2.2E-13 4.8E-18 126.7 14.0 181 15-239 45-233 (234)
115 PRK14958 DNA polymerase III su 99.5 1.3E-13 2.8E-18 141.7 13.4 163 12-202 35-225 (509)
116 KOG0989|consensus 99.5 5.3E-13 1.1E-17 122.1 15.7 169 13-203 55-236 (346)
117 CHL00095 clpC Clp protease ATP 99.5 1.6E-13 3.4E-18 150.3 14.7 183 10-206 195-402 (821)
118 PRK04195 replication factor C 99.5 5.7E-13 1.2E-17 137.8 17.8 162 13-203 37-205 (482)
119 PF00308 Bac_DnaA: Bacterial d 99.5 1E-13 2.2E-18 127.4 10.6 172 15-205 34-216 (219)
120 TIGR03346 chaperone_ClpB ATP-d 99.5 4.1E-13 8.9E-18 147.5 17.0 185 10-207 189-398 (852)
121 PRK08903 DnaA regulatory inact 99.5 3.3E-13 7.2E-18 125.9 13.9 178 12-239 39-224 (227)
122 PRK14964 DNA polymerase III su 99.5 3.6E-13 7.8E-18 136.1 14.9 165 11-203 31-223 (491)
123 PRK05201 hslU ATP-dependent pr 99.5 3.9E-13 8.5E-18 130.9 14.5 156 74-241 249-432 (443)
124 KOG2028|consensus 99.5 7.1E-13 1.5E-17 123.5 15.2 190 11-241 158-368 (554)
125 PRK14961 DNA polymerase III su 99.5 4.4E-13 9.6E-18 133.3 14.9 182 12-241 35-244 (363)
126 PRK08691 DNA polymerase III su 99.5 4.6E-13 1E-17 138.5 15.2 166 11-204 34-227 (709)
127 TIGR00382 clpX endopeptidase C 99.5 7.7E-13 1.7E-17 131.0 15.4 193 15-209 116-388 (413)
128 PRK14957 DNA polymerase III su 99.5 1.2E-12 2.6E-17 134.3 17.0 164 12-203 35-226 (546)
129 COG0593 DnaA ATPase involved i 99.5 6.2E-13 1.3E-17 129.9 14.1 195 14-244 112-316 (408)
130 PRK14951 DNA polymerase III su 99.5 6.5E-13 1.4E-17 138.0 15.1 165 11-203 34-231 (618)
131 COG2607 Predicted ATPase (AAA+ 99.5 1.7E-12 3.6E-17 114.6 14.8 175 7-201 76-277 (287)
132 PRK06620 hypothetical protein; 99.4 1E-12 2.2E-17 120.1 12.1 165 16-238 45-213 (214)
133 PRK14969 DNA polymerase III su 99.4 1.1E-12 2.4E-17 135.8 13.7 164 12-203 35-226 (527)
134 PLN03025 replication factor C 99.4 7.7E-12 1.7E-16 122.6 18.7 131 14-167 33-175 (319)
135 TIGR02640 gas_vesic_GvpN gas v 99.4 2.3E-12 4.9E-17 122.3 14.3 134 14-163 20-198 (262)
136 PRK14959 DNA polymerase III su 99.4 2.5E-12 5.4E-17 132.6 15.5 162 12-201 35-224 (624)
137 PRK07764 DNA polymerase III su 99.4 7.4E-12 1.6E-16 134.8 19.5 164 11-202 33-226 (824)
138 TIGR02734 crtI_fam phytoene de 99.4 1.2E-11 2.6E-16 129.8 20.5 237 294-534 210-491 (502)
139 PRK05563 DNA polymerase III su 99.4 3.4E-12 7.4E-17 133.1 15.8 165 11-203 34-226 (559)
140 PRK14952 DNA polymerase III su 99.4 1.2E-11 2.5E-16 128.3 19.5 164 12-203 32-225 (584)
141 PRK13341 recombination factor 99.4 2.3E-12 5E-17 137.0 14.5 161 13-202 50-222 (725)
142 PRK14963 DNA polymerase III su 99.4 8.2E-12 1.8E-16 128.1 17.8 163 12-202 33-222 (504)
143 PRK11034 clpA ATP-dependent Cl 99.4 3.2E-12 6.9E-17 136.6 15.3 183 14-210 487-720 (758)
144 PRK12402 replication factor C 99.4 1.5E-11 3.2E-16 122.4 19.2 184 15-241 36-249 (337)
145 COG2812 DnaX DNA polymerase II 99.4 8.8E-13 1.9E-17 132.7 10.0 172 12-205 35-228 (515)
146 PRK09087 hypothetical protein; 99.4 3.5E-12 7.7E-17 117.6 12.5 174 15-241 44-222 (226)
147 TIGR01650 PD_CobS cobaltochela 99.4 7.9E-13 1.7E-17 125.7 8.0 139 11-164 60-234 (327)
148 TIGR02639 ClpA ATP-dependent C 99.4 8.3E-12 1.8E-16 135.3 16.5 180 15-210 484-716 (731)
149 COG1224 TIP49 DNA helicase TIP 99.4 1.2E-11 2.7E-16 115.2 15.1 132 74-243 291-434 (450)
150 PHA02544 44 clamp loader, smal 99.4 3.5E-12 7.5E-17 125.5 12.3 134 12-164 40-174 (316)
151 PRK05896 DNA polymerase III su 99.4 7.5E-12 1.6E-16 128.4 14.9 164 11-202 34-225 (605)
152 PRK14965 DNA polymerase III su 99.4 7.5E-12 1.6E-16 131.2 14.4 166 11-204 34-227 (576)
153 PRK07133 DNA polymerase III su 99.4 4.5E-11 9.7E-16 125.3 19.4 170 11-202 36-224 (725)
154 PRK07940 DNA polymerase III su 99.3 1.3E-11 2.9E-16 122.5 14.5 135 10-161 31-187 (394)
155 PRK14953 DNA polymerase III su 99.3 1.6E-11 3.5E-16 125.6 15.4 182 12-241 35-244 (486)
156 PRK08451 DNA polymerase III su 99.3 2.3E-11 5E-16 124.2 15.4 167 11-205 32-226 (535)
157 PRK06647 DNA polymerase III su 99.3 2.4E-11 5.1E-16 126.3 15.5 164 12-203 35-226 (563)
158 COG0542 clpA ATP-binding subun 99.3 2.4E-11 5.3E-16 127.1 15.3 190 9-208 185-396 (786)
159 TIGR02397 dnaX_nterm DNA polym 99.3 2E-11 4.3E-16 122.3 14.3 183 11-241 32-242 (355)
160 PRK09111 DNA polymerase III su 99.3 4.5E-11 9.8E-16 124.7 17.0 169 12-202 43-238 (598)
161 PRK14948 DNA polymerase III su 99.3 1.7E-10 3.6E-15 121.4 19.2 168 12-201 35-226 (620)
162 COG0542 clpA ATP-binding subun 99.3 2.2E-11 4.8E-16 127.3 12.5 182 13-210 519-759 (786)
163 cd00009 AAA The AAA+ (ATPases 99.3 3.7E-11 8E-16 104.0 11.8 123 12-148 16-150 (151)
164 TIGR02903 spore_lon_C ATP-depe 99.3 1.7E-10 3.6E-15 121.9 18.3 200 14-242 174-431 (615)
165 KOG1969|consensus 99.3 1.4E-10 3.1E-15 117.6 16.6 174 11-208 322-518 (877)
166 PRK14955 DNA polymerase III su 99.3 6.6E-11 1.4E-15 119.2 14.4 192 12-240 35-256 (397)
167 TIGR02730 carot_isom carotene 99.3 2.3E-10 4.9E-15 119.6 18.7 239 294-533 220-490 (493)
168 PRK14970 DNA polymerase III su 99.3 1.3E-10 2.7E-15 116.7 15.8 163 12-202 36-214 (367)
169 PRK06305 DNA polymerase III su 99.2 4.3E-10 9.3E-15 114.5 19.2 162 12-201 36-226 (451)
170 PRK14954 DNA polymerase III su 99.2 3.8E-10 8.3E-15 118.0 19.2 172 11-204 34-235 (620)
171 COG1219 ClpX ATP-dependent pro 99.2 3.2E-10 6.9E-15 104.4 15.9 98 16-113 98-203 (408)
172 PRK00440 rfc replication facto 99.2 3.2E-10 6.9E-15 111.9 17.1 178 15-241 38-226 (319)
173 KOG0745|consensus 99.2 3.4E-10 7.3E-15 108.3 15.6 190 15-206 226-509 (564)
174 PRK04132 replication factor C 99.2 2.7E-10 5.9E-15 121.9 16.5 158 17-202 566-736 (846)
175 TIGR03346 chaperone_ClpB ATP-d 99.2 3.2E-10 6.8E-15 124.9 17.2 181 14-210 594-830 (852)
176 PRK10865 protein disaggregatio 99.2 2.6E-10 5.7E-15 125.0 16.1 179 16-210 599-833 (857)
177 TIGR03345 VI_ClpV1 type VI sec 99.2 2.1E-10 4.5E-15 125.3 15.0 180 14-210 594-835 (852)
178 PF05621 TniB: Bacterial TniB 99.2 3.4E-10 7.5E-15 105.7 14.0 187 12-212 58-276 (302)
179 PRK14950 DNA polymerase III su 99.2 3.9E-10 8.4E-15 119.1 16.2 162 12-201 35-225 (585)
180 PF07724 AAA_2: AAA domain (Cd 99.2 5.3E-11 1.2E-15 104.5 7.4 115 14-129 2-131 (171)
181 PRK13407 bchI magnesium chelat 99.2 2.9E-10 6.2E-15 110.2 13.1 75 76-164 130-217 (334)
182 CHL00095 clpC Clp protease ATP 99.2 6.7E-10 1.5E-14 122.0 17.7 179 16-210 540-786 (821)
183 smart00350 MCM minichromosome 99.2 2.1E-10 4.7E-15 119.0 13.1 196 16-243 237-506 (509)
184 PRK05707 DNA polymerase III su 99.2 5.8E-10 1.3E-14 108.5 15.2 133 11-163 18-178 (328)
185 PHA02244 ATPase-like protein 99.2 2.7E-10 5.9E-15 109.6 11.9 125 13-154 117-265 (383)
186 PF07728 AAA_5: AAA domain (dy 99.2 7.6E-11 1.6E-15 100.9 7.1 110 17-141 1-139 (139)
187 COG0714 MoxR-like ATPases [Gen 99.1 1.6E-10 3.6E-15 113.7 10.2 138 12-163 40-203 (329)
188 PRK14971 DNA polymerase III su 99.1 2.3E-09 5E-14 112.9 18.9 166 11-204 35-229 (614)
189 TIGR00678 holB DNA polymerase 99.1 4.8E-10 1E-14 101.2 12.0 130 11-162 10-167 (188)
190 TIGR03015 pepcterm_ATPase puta 99.1 2.8E-09 6E-14 102.4 17.8 194 15-242 43-267 (269)
191 CHL00081 chlI Mg-protoporyphyr 99.1 1.3E-09 2.9E-14 105.7 14.7 137 75-241 145-322 (350)
192 PRK09112 DNA polymerase III su 99.1 2.1E-09 4.6E-14 105.5 15.9 169 11-203 41-246 (351)
193 TIGR02030 BchI-ChlI magnesium 99.1 1.3E-09 2.8E-14 105.9 14.2 138 74-241 131-309 (337)
194 KOG1514|consensus 99.1 1.9E-09 4.1E-14 109.5 15.6 220 15-261 422-675 (767)
195 TIGR02031 BchD-ChlD magnesium 99.1 1.5E-09 3.2E-14 114.2 15.2 196 16-241 17-258 (589)
196 smart00382 AAA ATPases associa 99.1 1.3E-09 2.7E-14 93.6 11.9 126 15-150 2-147 (148)
197 COG1220 HslU ATP-dependent pro 99.1 3.3E-09 7.2E-14 98.5 14.9 84 75-160 251-346 (444)
198 PRK13531 regulatory ATPase Rav 99.1 5.1E-09 1.1E-13 104.6 16.4 199 12-241 36-283 (498)
199 TIGR02442 Cob-chelat-sub cobal 99.1 1.1E-09 2.5E-14 116.5 12.4 197 16-242 26-305 (633)
200 KOG2227|consensus 99.0 1.4E-08 3.1E-13 98.6 17.3 222 11-246 171-420 (529)
201 PF06068 TIP49: TIP49 C-termin 99.0 6.1E-09 1.3E-13 99.3 13.7 76 74-167 278-365 (398)
202 PRK06871 DNA polymerase III su 99.0 1.1E-08 2.5E-13 98.6 15.5 136 11-163 20-179 (325)
203 KOG0991|consensus 99.0 1.2E-09 2.6E-14 96.1 7.8 136 12-167 45-189 (333)
204 PRK07471 DNA polymerase III su 99.0 8.5E-09 1.8E-13 101.8 14.1 163 11-199 37-240 (365)
205 PF07726 AAA_3: ATPase family 99.0 6.6E-11 1.4E-15 95.7 -0.8 105 17-142 1-130 (131)
206 PTZ00111 DNA replication licen 99.0 4.9E-09 1.1E-13 111.7 12.2 135 15-164 492-658 (915)
207 KOG1942|consensus 99.0 1.3E-08 2.9E-13 92.6 13.1 131 74-242 296-439 (456)
208 PRK06964 DNA polymerase III su 98.9 8.1E-09 1.8E-13 100.4 12.5 135 11-162 17-203 (342)
209 PRK11331 5-methylcytosine-spec 98.9 5.8E-09 1.3E-13 103.4 11.5 122 14-149 193-357 (459)
210 KOG2035|consensus 98.9 6.3E-09 1.4E-13 94.1 10.5 136 15-167 34-203 (351)
211 COG0470 HolB ATPase involved i 98.9 4.7E-09 1E-13 103.9 10.9 129 13-160 22-178 (325)
212 COG2204 AtoC Response regulato 98.9 2.7E-09 5.9E-14 106.2 8.9 177 13-205 162-374 (464)
213 TIGR02974 phageshock_pspF psp 98.9 1.3E-08 2.8E-13 99.6 13.4 127 13-157 20-177 (329)
214 KOG0741|consensus 98.9 1.3E-08 2.9E-13 99.8 12.9 146 12-161 535-684 (744)
215 PRK08116 hypothetical protein; 98.9 3.8E-09 8.2E-14 100.1 8.2 133 13-162 112-259 (268)
216 COG1221 PspF Transcriptional r 98.9 3.4E-09 7.4E-14 103.6 7.2 174 13-207 99-311 (403)
217 PF13173 AAA_14: AAA domain 98.9 7E-09 1.5E-13 87.1 8.2 119 15-154 2-126 (128)
218 PRK05564 DNA polymerase III su 98.9 1.8E-08 3.9E-13 98.6 12.2 133 11-164 22-166 (313)
219 PRK07399 DNA polymerase III su 98.9 3.3E-08 7.2E-13 95.7 13.8 164 11-200 22-224 (314)
220 TIGR00602 rad24 checkpoint pro 98.9 1.5E-08 3.3E-13 106.0 11.9 177 11-206 106-329 (637)
221 PRK06090 DNA polymerase III su 98.9 2.9E-08 6.2E-13 95.6 12.8 131 11-161 21-178 (319)
222 PRK07993 DNA polymerase III su 98.9 2.1E-08 4.6E-13 97.9 12.0 134 11-161 20-178 (334)
223 PRK11608 pspF phage shock prot 98.9 1.6E-08 3.4E-13 99.1 11.0 174 13-205 27-240 (326)
224 COG2907 Predicted NAD/FAD-bind 98.8 8.5E-08 1.8E-12 89.7 14.8 93 296-390 213-305 (447)
225 PF13177 DNA_pol3_delta2: DNA 98.8 2E-08 4.3E-13 87.8 10.2 120 11-150 15-161 (162)
226 PRK05022 anaerobic nitric oxid 98.8 5.1E-08 1.1E-12 101.8 15.1 176 13-206 208-421 (509)
227 PRK08058 DNA polymerase III su 98.8 2.2E-08 4.7E-13 98.3 11.6 129 11-161 24-180 (329)
228 PRK08769 DNA polymerase III su 98.8 2E-08 4.4E-13 96.8 11.1 134 11-161 22-183 (319)
229 TIGR00368 Mg chelatase-related 98.8 4E-08 8.6E-13 100.8 13.7 197 13-239 209-497 (499)
230 PRK15429 formate hydrogenlyase 98.8 9.6E-08 2.1E-12 103.6 15.1 177 13-205 397-609 (686)
231 TIGR00764 lon_rel lon-related 98.8 1.2E-07 2.6E-12 100.1 14.8 105 117-242 267-392 (608)
232 PF00158 Sigma54_activat: Sigm 98.8 6.6E-08 1.4E-12 84.7 10.6 100 13-127 20-143 (168)
233 PRK08181 transposase; Validate 98.8 1.4E-08 3.1E-13 95.5 6.9 73 14-88 105-181 (269)
234 TIGR01817 nifA Nif-specific re 98.8 5.9E-08 1.3E-12 102.2 12.3 176 13-204 217-427 (534)
235 COG3829 RocR Transcriptional r 98.8 8.7E-09 1.9E-13 102.5 5.5 176 12-203 265-477 (560)
236 COG3604 FhlA Transcriptional r 98.8 2.9E-08 6.2E-13 97.5 8.8 176 13-205 244-456 (550)
237 KOG2680|consensus 98.7 2.6E-07 5.5E-12 84.7 14.2 132 74-243 288-431 (454)
238 PRK11388 DNA-binding transcrip 98.7 1.3E-07 2.7E-12 102.1 14.3 172 14-203 347-552 (638)
239 KOG4254|consensus 98.7 6E-07 1.3E-11 87.0 16.9 232 295-531 256-542 (561)
240 PRK09862 putative ATP-dependen 98.7 1.5E-07 3.3E-12 96.0 13.8 196 13-240 208-491 (506)
241 PRK08699 DNA polymerase III su 98.7 7.6E-08 1.6E-12 93.7 11.0 133 12-161 18-183 (325)
242 KOG0990|consensus 98.7 6.3E-08 1.4E-12 89.8 9.5 131 16-166 63-206 (360)
243 PF03215 Rad17: Rad17 cell cyc 98.7 4.2E-07 9.1E-12 93.5 16.0 179 11-206 41-269 (519)
244 PRK10820 DNA-binding transcrip 98.7 2.3E-07 5.1E-12 96.8 13.8 171 14-205 226-437 (520)
245 PRK15424 propionate catabolism 98.7 8.6E-08 1.9E-12 99.0 9.8 171 14-204 241-464 (538)
246 TIGR02329 propionate_PrpR prop 98.7 1.1E-07 2.4E-12 98.4 10.6 174 14-205 234-450 (526)
247 PRK12377 putative replication 98.7 1E-07 2.2E-12 88.7 9.1 70 15-86 101-175 (248)
248 PRK06835 DNA replication prote 98.7 3.9E-08 8.6E-13 95.5 6.5 71 15-87 183-259 (329)
249 PRK06526 transposase; Provisio 98.6 3.4E-08 7.4E-13 92.6 5.6 72 14-87 97-172 (254)
250 PF13401 AAA_22: AAA domain; P 98.6 1.3E-07 2.8E-12 79.9 8.0 74 14-87 3-100 (131)
251 COG1233 Phytoene dehydrogenase 98.6 1.2E-07 2.6E-12 98.5 9.3 73 292-364 213-287 (487)
252 PF01695 IstB_IS21: IstB-like 98.6 3.7E-08 7.9E-13 87.4 4.5 72 13-86 45-120 (178)
253 COG1239 ChlI Mg-chelatase subu 98.6 4.4E-07 9.6E-12 88.1 11.9 137 15-165 38-234 (423)
254 TIGR02915 PEP_resp_reg putativ 98.6 1.6E-07 3.4E-12 97.2 9.1 177 14-205 161-372 (445)
255 PRK09183 transposase/IS protei 98.6 1.3E-07 2.8E-12 89.3 7.8 75 12-87 99-177 (259)
256 KOG0480|consensus 98.6 5.4E-07 1.2E-11 90.8 11.5 195 16-248 379-650 (764)
257 PF00493 MCM: MCM2/3/5 family 98.6 1.6E-07 3.5E-12 92.0 7.8 195 14-241 56-326 (331)
258 PRK07952 DNA replication prote 98.6 1.5E-07 3.3E-12 87.3 7.1 70 16-87 100-175 (244)
259 PF01637 Arch_ATPase: Archaeal 98.6 1.8E-07 3.8E-12 87.7 7.7 170 12-195 17-232 (234)
260 PF05729 NACHT: NACHT domain 98.5 6.1E-07 1.3E-11 79.1 10.6 141 16-165 1-165 (166)
261 COG1484 DnaC DNA replication p 98.5 2E-07 4.4E-12 87.5 7.7 71 14-86 104-179 (254)
262 PRK06921 hypothetical protein; 98.5 2E-07 4.4E-12 88.2 7.6 69 14-85 116-188 (266)
263 COG1241 MCM2 Predicted ATPase 98.5 5.1E-07 1.1E-11 94.3 10.8 199 16-244 320-595 (682)
264 PRK08939 primosomal protein Dn 98.5 2.3E-07 5.1E-12 89.4 7.8 71 14-86 155-229 (306)
265 PF12774 AAA_6: Hydrolytic ATP 98.5 1.4E-06 2.9E-11 80.4 12.4 132 13-159 30-176 (231)
266 KOG0478|consensus 98.5 6.9E-07 1.5E-11 90.7 10.0 135 16-165 463-628 (804)
267 PF14532 Sigma54_activ_2: Sigm 98.5 1.7E-07 3.8E-12 79.8 4.9 87 13-126 19-108 (138)
268 PRK13406 bchD magnesium chelat 98.5 3E-06 6.6E-11 88.6 14.9 194 16-241 26-250 (584)
269 KOG1970|consensus 98.5 4.4E-06 9.5E-11 83.2 14.8 182 12-206 107-321 (634)
270 PF01078 Mg_chelatase: Magnesi 98.4 6.8E-08 1.5E-12 85.8 1.8 25 15-39 22-46 (206)
271 PRK10923 glnG nitrogen regulat 98.4 1.6E-06 3.5E-11 90.3 12.2 178 13-205 159-371 (469)
272 COG1618 Predicted nucleotide k 98.4 3.7E-06 8E-11 70.4 11.2 27 13-39 3-29 (179)
273 PRK11361 acetoacetate metaboli 98.4 4.6E-06 1E-10 86.7 14.1 176 14-204 165-375 (457)
274 TIGR02237 recomb_radB DNA repa 98.4 1.5E-06 3.1E-11 80.0 8.9 116 11-127 8-149 (209)
275 PRK15115 response regulator Gl 98.4 4.5E-06 9.8E-11 86.3 13.2 170 14-204 156-366 (444)
276 PRK05917 DNA polymerase III su 98.4 3.4E-06 7.3E-11 79.8 10.8 123 11-150 15-154 (290)
277 cd01120 RecA-like_NTPases RecA 98.3 2.7E-06 5.8E-11 74.8 9.7 108 18-129 2-138 (165)
278 COG3283 TyrR Transcriptional r 98.3 5.5E-06 1.2E-10 78.1 10.9 171 16-205 228-432 (511)
279 PRK13765 ATP-dependent proteas 98.3 6.5E-06 1.4E-10 86.8 12.5 104 118-239 277-398 (637)
280 PF12775 AAA_7: P-loop contain 98.3 1.2E-06 2.6E-11 83.2 6.2 137 14-166 32-196 (272)
281 PF03969 AFG1_ATPase: AFG1-lik 98.3 3.4E-06 7.4E-11 83.1 8.9 103 12-128 59-168 (362)
282 PRK05818 DNA polymerase III su 98.2 1.1E-05 2.4E-10 74.6 11.1 122 12-150 4-147 (261)
283 KOG1051|consensus 98.2 5.1E-06 1.1E-10 89.0 10.2 101 14-128 590-711 (898)
284 TIGR01818 ntrC nitrogen regula 98.2 3.6E-06 7.7E-11 87.6 8.8 178 13-205 155-367 (463)
285 smart00763 AAA_PrkA PrkA AAA d 98.2 2.1E-05 4.5E-10 76.4 13.2 63 100-165 250-329 (361)
286 COG3267 ExeA Type II secretory 98.1 7.8E-05 1.7E-09 67.7 14.2 182 12-209 47-257 (269)
287 COG0606 Predicted ATPase with 98.1 7.6E-06 1.7E-10 80.8 8.4 26 14-39 197-222 (490)
288 PRK07276 DNA polymerase III su 98.1 2.7E-05 5.8E-10 74.0 11.6 130 11-160 20-172 (290)
289 PRK09361 radB DNA repair and r 98.1 8.5E-06 1.9E-10 75.8 8.2 116 11-127 19-161 (225)
290 PF00910 RNA_helicase: RNA hel 98.1 1.1E-05 2.3E-10 65.2 7.6 23 18-40 1-23 (107)
291 PRK07132 DNA polymerase III su 98.1 2.6E-05 5.6E-10 74.8 11.5 128 12-161 15-160 (299)
292 PRK10365 transcriptional regul 98.1 8.7E-06 1.9E-10 84.2 8.8 138 13-165 160-329 (441)
293 cd01121 Sms Sms (bacterial rad 98.1 1.3E-05 2.7E-10 79.6 9.3 112 11-126 78-208 (372)
294 TIGR02012 tigrfam_recA protein 98.1 2.6E-05 5.7E-10 75.1 11.1 117 11-127 51-191 (321)
295 PRK11823 DNA repair protein Ra 98.1 1.7E-05 3.8E-10 80.9 10.5 112 11-126 76-206 (446)
296 KOG1051|consensus 98.1 5E-05 1.1E-09 81.7 14.0 188 9-207 202-412 (898)
297 KOG2228|consensus 98.1 1.7E-05 3.7E-10 74.4 9.2 140 13-164 47-220 (408)
298 cd00983 recA RecA is a bacter 98.1 3E-05 6.5E-10 74.8 10.9 117 12-128 52-192 (325)
299 KOG1968|consensus 98.1 4.5E-06 9.7E-11 90.2 5.5 201 17-242 359-571 (871)
300 cd01124 KaiC KaiC is a circadi 98.0 4.9E-05 1.1E-09 68.5 10.2 33 17-49 1-36 (187)
301 COG1485 Predicted ATPase [Gene 98.0 1.6E-05 3.4E-10 75.6 6.8 101 12-127 62-170 (367)
302 PF14516 AAA_35: AAA-like doma 98.0 0.00064 1.4E-08 67.0 18.4 174 13-201 29-243 (331)
303 COG4619 ABC-type uncharacteriz 98.0 5.9E-05 1.3E-09 63.7 9.2 37 3-39 17-53 (223)
304 PRK08533 flagellar accessory p 98.0 7.1E-05 1.5E-09 69.5 10.9 77 11-87 20-130 (230)
305 KOG2543|consensus 97.9 6.5E-05 1.4E-09 71.9 10.3 139 13-163 28-193 (438)
306 PF00931 NB-ARC: NB-ARC domain 97.9 0.00018 3.8E-09 69.8 13.7 161 13-197 17-202 (287)
307 cd01394 radB RadB. The archaea 97.9 5.4E-05 1.2E-09 70.1 9.0 116 11-127 15-157 (218)
308 COG1116 TauB ABC-type nitrate/ 97.9 7.7E-05 1.7E-09 67.9 9.5 29 11-39 25-53 (248)
309 PRK09354 recA recombinase A; P 97.9 0.00011 2.4E-09 71.5 10.9 116 12-127 57-196 (349)
310 PF13207 AAA_17: AAA domain; P 97.9 1.5E-05 3.2E-10 66.2 4.2 30 18-47 2-31 (121)
311 COG3284 AcoR Transcriptional a 97.9 2.9E-05 6.3E-10 79.3 6.9 174 14-205 335-540 (606)
312 COG3854 SpoIIIAA ncharacterize 97.8 0.00015 3.3E-09 64.5 10.2 93 16-127 138-252 (308)
313 COG1373 Predicted ATPase (AAA+ 97.8 0.00066 1.4E-08 68.4 16.3 120 17-157 39-161 (398)
314 cd01393 recA_like RecA is a b 97.8 6.8E-05 1.5E-09 69.8 8.6 116 11-126 15-167 (226)
315 PHA00729 NTP-binding motif con 97.8 3.6E-05 7.9E-10 69.8 6.3 25 16-40 18-42 (226)
316 TIGR01618 phage_P_loop phage n 97.8 1.9E-05 4.1E-10 71.9 4.3 72 15-88 12-95 (220)
317 TIGR00416 sms DNA repair prote 97.8 9.1E-05 2E-09 75.7 9.6 113 11-127 90-221 (454)
318 KOG0482|consensus 97.8 2.1E-05 4.5E-10 77.5 4.6 207 14-242 374-639 (721)
319 PRK06067 flagellar accessory p 97.8 0.00014 3E-09 68.1 10.1 77 11-87 21-133 (234)
320 PRK04296 thymidine kinase; Pro 97.8 0.00024 5.2E-09 64.0 11.2 32 16-47 3-37 (190)
321 PF05707 Zot: Zonular occluden 97.8 3.5E-05 7.6E-10 69.6 5.8 123 18-150 3-146 (193)
322 TIGR03877 thermo_KaiC_1 KaiC d 97.8 0.00028 6.1E-09 66.0 11.9 39 11-49 17-58 (237)
323 PRK05973 replicative DNA helic 97.8 0.0002 4.3E-09 66.1 10.5 39 11-49 60-101 (237)
324 cd01123 Rad51_DMC1_radA Rad51_ 97.8 8.9E-05 1.9E-09 69.5 8.4 117 11-127 15-169 (235)
325 PRK10536 hypothetical protein; 97.8 0.00016 3.4E-09 66.9 9.3 24 15-38 74-97 (262)
326 COG5271 MDN1 AAA ATPase contai 97.8 0.00011 2.3E-09 81.9 9.2 137 13-165 1541-1705(4600)
327 COG4650 RtcR Sigma54-dependent 97.7 4.1E-05 8.8E-10 70.4 5.2 80 12-91 205-299 (531)
328 PF04665 Pox_A32: Poxvirus A32 97.7 0.00031 6.7E-09 64.6 10.8 133 13-162 11-169 (241)
329 PHA02624 large T antigen; Prov 97.7 0.0001 2.3E-09 75.6 8.3 123 11-149 427-561 (647)
330 PF03266 NTPase_1: NTPase; In 97.7 4.5E-05 9.8E-10 66.8 5.0 23 17-39 1-23 (168)
331 PRK07261 topology modulation p 97.7 0.00011 2.3E-09 65.0 7.2 33 17-49 2-34 (171)
332 COG1066 Sms Predicted ATP-depe 97.7 0.00041 8.8E-09 67.4 11.5 151 12-166 90-259 (456)
333 PF07693 KAP_NTPase: KAP famil 97.7 0.0011 2.3E-08 65.6 15.1 79 74-166 172-266 (325)
334 cd03283 ABC_MutS-like MutS-lik 97.7 0.00028 6.1E-09 63.9 10.0 107 13-130 23-150 (199)
335 PRK08118 topology modulation p 97.7 0.0001 2.2E-09 64.7 6.9 33 16-48 2-34 (167)
336 cd00984 DnaB_C DnaB helicase C 97.7 0.00028 6E-09 66.5 10.3 39 11-49 9-51 (242)
337 cd00544 CobU Adenosylcobinamid 97.6 0.00033 7.1E-09 61.4 9.3 71 18-90 2-89 (169)
338 TIGR02688 conserved hypothetic 97.6 0.00072 1.6E-08 66.9 12.2 80 13-112 207-290 (449)
339 cd03222 ABC_RNaseL_inhibitor T 97.6 0.00022 4.8E-09 63.1 7.9 75 11-85 21-100 (177)
340 PF06745 KaiC: KaiC; InterPro 97.6 0.00048 1E-08 64.1 10.6 108 11-126 15-159 (226)
341 KOG0477|consensus 97.6 0.00022 4.9E-09 72.2 8.7 30 16-45 483-512 (854)
342 TIGR03878 thermo_KaiC_2 KaiC d 97.6 0.00052 1.1E-08 65.0 11.0 39 11-49 32-73 (259)
343 KOG3347|consensus 97.6 5.7E-05 1.2E-09 62.3 3.5 35 13-47 5-39 (176)
344 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00091 2E-08 61.3 11.8 23 15-37 29-51 (213)
345 PF00448 SRP54: SRP54-type pro 97.6 0.00061 1.3E-08 61.4 10.5 71 15-85 1-94 (196)
346 PRK14974 cell division protein 97.6 0.00073 1.6E-08 65.9 11.7 75 13-87 138-235 (336)
347 PRK04841 transcriptional regul 97.6 0.0011 2.3E-08 75.4 15.0 154 12-189 29-218 (903)
348 KOG2383|consensus 97.6 0.0002 4.3E-09 69.1 7.4 28 12-39 111-138 (467)
349 TIGR02238 recomb_DMC1 meiotic 97.6 0.00034 7.4E-09 67.8 9.4 116 11-126 92-244 (313)
350 PRK04328 hypothetical protein; 97.6 0.00083 1.8E-08 63.3 11.7 38 11-48 19-59 (249)
351 PRK06581 DNA polymerase III su 97.6 0.014 3.1E-07 53.1 18.7 137 12-165 12-163 (263)
352 COG4178 ABC-type uncharacteriz 97.6 0.00048 1E-08 71.2 10.6 34 6-39 410-443 (604)
353 PLN03187 meiotic recombination 97.6 0.0005 1.1E-08 67.3 10.2 116 11-126 122-274 (344)
354 TIGR02858 spore_III_AA stage I 97.5 0.00021 4.6E-09 67.6 7.2 27 13-39 109-135 (270)
355 TIGR03197 MnmC_Cterm tRNA U-34 97.5 0.0022 4.8E-08 64.8 15.2 56 303-358 135-190 (381)
356 PRK00131 aroK shikimate kinase 97.5 9.3E-05 2E-09 65.8 4.6 34 13-46 2-35 (175)
357 PRK04301 radA DNA repair and r 97.5 0.00038 8.3E-09 68.2 8.8 40 11-50 98-146 (317)
358 cd03216 ABC_Carb_Monos_I This 97.5 0.00047 1E-08 60.4 8.5 108 10-129 21-143 (163)
359 cd03243 ABC_MutS_homologs The 97.5 0.00075 1.6E-08 61.5 10.1 26 12-37 26-51 (202)
360 cd01131 PilT Pilus retraction 97.5 0.00026 5.6E-09 64.3 6.9 67 17-83 3-83 (198)
361 cd01128 rho_factor Transcripti 97.5 0.0012 2.5E-08 61.8 11.3 31 11-41 12-42 (249)
362 PRK05800 cobU adenosylcobinami 97.5 0.00068 1.5E-08 59.6 9.1 92 17-112 3-114 (170)
363 cd03238 ABC_UvrA The excision 97.5 0.0006 1.3E-08 60.3 8.5 32 6-37 12-43 (176)
364 PRK09519 recA DNA recombinatio 97.5 0.00086 1.9E-08 72.0 11.2 118 11-128 56-197 (790)
365 COG5271 MDN1 AAA ATPase contai 97.5 0.00031 6.7E-09 78.4 7.8 135 14-165 887-1049(4600)
366 PF01266 DAO: FAD dependent ox 97.5 0.0032 6.9E-08 62.9 14.9 88 295-391 136-228 (358)
367 PRK09376 rho transcription ter 97.5 0.0016 3.4E-08 64.0 11.9 28 13-40 167-194 (416)
368 PF13604 AAA_30: AAA domain; P 97.4 0.0018 3.8E-08 58.7 11.6 36 14-49 17-55 (196)
369 cd01122 GP4d_helicase GP4d_hel 97.4 0.00066 1.4E-08 65.1 9.4 39 11-49 26-68 (271)
370 PF13671 AAA_33: AAA domain; P 97.4 0.00033 7.1E-09 59.9 6.5 32 18-51 2-33 (143)
371 PLN03210 Resistant to P. syrin 97.4 0.001 2.2E-08 77.0 12.3 134 12-166 204-367 (1153)
372 PRK14722 flhF flagellar biosyn 97.4 0.0013 2.8E-08 65.0 11.2 38 13-50 135-177 (374)
373 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00074 1.6E-08 57.8 8.5 76 10-85 21-99 (144)
374 TIGR03880 KaiC_arch_3 KaiC dom 97.4 0.0013 2.7E-08 61.2 10.8 40 11-50 12-54 (224)
375 PRK00625 shikimate kinase; Pro 97.4 0.00015 3.3E-09 63.8 4.3 31 17-47 2-32 (173)
376 TIGR02236 recomb_radA DNA repa 97.4 0.00066 1.4E-08 66.5 9.2 40 11-50 91-139 (310)
377 COG0703 AroK Shikimate kinase 97.4 0.00014 3.1E-09 62.7 3.6 33 15-47 2-34 (172)
378 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0017 3.6E-08 60.6 11.1 38 11-48 16-56 (229)
379 TIGR02352 thiamin_ThiO glycine 97.4 0.0064 1.4E-07 60.3 15.9 195 302-532 136-334 (337)
380 KOG0481|consensus 97.4 0.0019 4.2E-08 64.2 11.4 146 15-165 364-530 (729)
381 COG1126 GlnQ ABC-type polar am 97.4 0.0011 2.4E-08 58.9 8.8 27 11-37 24-50 (240)
382 COG1136 SalX ABC-type antimicr 97.4 0.0016 3.4E-08 59.3 10.1 29 11-39 27-55 (226)
383 PTZ00035 Rad51 protein; Provis 97.4 0.00086 1.9E-08 65.9 9.2 116 11-126 114-266 (337)
384 PRK13948 shikimate kinase; Pro 97.4 0.00023 5E-09 63.2 4.7 35 13-47 8-42 (182)
385 KOG2170|consensus 97.4 0.00094 2E-08 62.1 8.6 74 14-87 109-191 (344)
386 smart00534 MUTSac ATPase domai 97.4 0.0022 4.7E-08 57.5 11.0 102 18-129 2-123 (185)
387 PF10443 RNA12: RNA12 protein; 97.4 0.0077 1.7E-07 59.6 15.4 142 12-166 14-232 (431)
388 cd03280 ABC_MutS2 MutS2 homolo 97.4 0.0017 3.7E-08 59.1 10.4 26 11-36 23-49 (200)
389 PF01745 IPT: Isopentenyl tran 97.3 0.00034 7.3E-09 62.0 5.4 151 17-181 3-157 (233)
390 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.001 2.3E-08 57.9 8.7 77 10-86 20-110 (157)
391 PRK13947 shikimate kinase; Pro 97.3 0.00021 4.5E-09 63.3 4.3 32 16-47 2-33 (171)
392 PRK13695 putative NTPase; Prov 97.3 0.0027 6E-08 56.3 11.4 23 17-39 2-24 (174)
393 COG2884 FtsE Predicted ATPase 97.3 0.0025 5.4E-08 55.4 10.4 29 11-39 24-52 (223)
394 PRK03839 putative kinase; Prov 97.3 0.00019 4.2E-09 64.1 4.0 31 17-47 2-32 (180)
395 PF10236 DAP3: Mitochondrial r 97.3 0.0081 1.8E-07 58.4 15.4 105 62-166 141-280 (309)
396 PRK12723 flagellar biosynthesi 97.3 0.0027 5.9E-08 63.3 12.1 138 13-162 172-334 (388)
397 PRK00771 signal recognition pa 97.3 0.0022 4.8E-08 64.9 11.7 72 13-86 93-187 (437)
398 cd03228 ABCC_MRP_Like The MRP 97.3 0.00052 1.1E-08 60.7 6.5 30 10-39 23-52 (171)
399 PF08303 tRNA_lig_kinase: tRNA 97.3 0.012 2.6E-07 50.2 14.1 130 20-167 4-147 (168)
400 PHA02774 E1; Provisional 97.3 0.0013 2.7E-08 67.6 9.8 58 11-83 430-488 (613)
401 cd03214 ABC_Iron-Siderophores_ 97.3 0.00073 1.6E-08 60.3 7.4 30 10-39 20-49 (180)
402 PRK06762 hypothetical protein; 97.3 0.00069 1.5E-08 59.7 7.1 38 15-52 2-39 (166)
403 PRK13949 shikimate kinase; Pro 97.3 0.00023 5E-09 62.7 4.0 32 16-47 2-33 (169)
404 COG3842 PotA ABC-type spermidi 97.3 0.00066 1.4E-08 66.0 7.4 28 12-39 28-55 (352)
405 TIGR02239 recomb_RAD51 DNA rep 97.3 0.00083 1.8E-08 65.4 8.1 116 11-127 92-245 (316)
406 PLN03186 DNA repair protein RA 97.3 0.00086 1.9E-08 65.7 8.1 117 11-127 119-272 (342)
407 PRK11889 flhF flagellar biosyn 97.3 0.003 6.6E-08 62.1 11.7 73 14-86 240-332 (436)
408 TIGR01984 UbiH 2-polyprenyl-6- 97.3 0.015 3.2E-07 58.9 17.4 57 302-358 104-162 (382)
409 cd03227 ABC_Class2 ABC-type Cl 97.3 0.0012 2.5E-08 57.9 8.1 27 13-39 19-45 (162)
410 COG3349 Uncharacterized conser 97.3 0.001 2.3E-08 67.0 8.5 223 304-533 216-461 (485)
411 COG2909 MalT ATP-dependent tra 97.3 0.0062 1.3E-07 64.7 14.3 158 11-190 33-227 (894)
412 cd00464 SK Shikimate kinase (S 97.2 0.00029 6.3E-09 61.1 4.0 31 17-47 1-31 (154)
413 cd00227 CPT Chloramphenicol (C 97.2 0.00027 5.8E-09 62.9 3.8 37 15-51 2-38 (175)
414 cd03115 SRP The signal recogni 97.2 0.0043 9.4E-08 55.0 11.6 35 17-51 2-39 (173)
415 PRK06217 hypothetical protein; 97.2 0.0003 6.5E-09 63.0 4.1 32 16-47 2-33 (183)
416 COG1102 Cmk Cytidylate kinase 97.2 0.00031 6.7E-09 59.1 3.7 28 18-45 3-30 (179)
417 TIGR01420 pilT_fam pilus retra 97.2 0.00075 1.6E-08 66.8 7.1 71 14-84 121-205 (343)
418 cd03282 ABC_MSH4_euk MutS4 hom 97.2 0.0039 8.4E-08 56.7 11.0 27 11-37 25-51 (204)
419 COG1936 Predicted nucleotide k 97.2 0.00026 5.6E-09 60.5 3.1 30 17-47 2-31 (180)
420 PRK04040 adenylate kinase; Pro 97.2 0.0025 5.3E-08 57.2 9.6 37 15-51 2-38 (188)
421 PRK14532 adenylate kinase; Pro 97.2 0.00034 7.4E-09 63.0 4.1 35 17-53 2-36 (188)
422 PF09336 Vps4_C: Vps4 C termin 97.2 0.00032 6.9E-09 49.6 3.0 36 226-261 27-62 (62)
423 COG1120 FepC ABC-type cobalami 97.2 0.0014 3.1E-08 60.8 8.1 30 10-39 23-52 (258)
424 TIGR00031 UDP-GALP_mutase UDP- 97.2 0.0071 1.5E-07 60.3 13.6 183 295-532 190-376 (377)
425 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0044 9.6E-08 53.3 10.5 30 17-46 4-36 (159)
426 cd03287 ABC_MSH3_euk MutS3 hom 97.2 0.0028 6E-08 58.3 9.9 27 11-37 27-53 (222)
427 TIGR02655 circ_KaiC circadian 97.2 0.0025 5.5E-08 66.2 10.9 78 11-88 259-367 (484)
428 PRK06547 hypothetical protein; 97.2 0.00044 9.6E-09 60.9 4.5 36 12-47 12-47 (172)
429 cd03247 ABCC_cytochrome_bd The 97.2 0.0026 5.6E-08 56.7 9.6 30 10-39 23-52 (178)
430 TIGR02782 TrbB_P P-type conjug 97.2 0.00084 1.8E-08 64.9 6.7 71 14-84 131-214 (299)
431 PF02562 PhoH: PhoH-like prote 97.2 0.0009 1.9E-08 60.2 6.4 25 15-39 19-43 (205)
432 PF13481 AAA_25: AAA domain; P 97.2 0.00091 2E-08 60.5 6.6 76 14-89 31-156 (193)
433 cd00046 DEXDc DEAD-like helica 97.2 0.002 4.4E-08 54.3 8.5 24 16-39 1-24 (144)
434 PRK13764 ATPase; Provisional 97.2 0.00097 2.1E-08 69.8 7.5 72 13-85 255-335 (602)
435 COG4088 Predicted nucleotide k 97.2 0.00094 2E-08 58.6 6.1 23 17-39 3-25 (261)
436 KOG0058|consensus 97.2 0.0016 3.4E-08 68.0 8.9 30 10-39 489-518 (716)
437 PF08433 KTI12: Chromatin asso 97.2 0.0011 2.3E-08 62.9 7.1 68 18-86 4-82 (270)
438 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00038 8.2E-09 62.4 3.9 34 18-53 2-35 (183)
439 COG1121 ZnuC ABC-type Mn/Zn tr 97.2 0.0012 2.6E-08 61.0 7.2 29 11-39 26-54 (254)
440 PRK14531 adenylate kinase; Pro 97.2 0.00049 1.1E-08 61.6 4.6 35 16-52 3-37 (183)
441 PF08423 Rad51: Rad51; InterP 97.2 0.00087 1.9E-08 63.3 6.4 121 12-132 35-192 (256)
442 COG1118 CysA ABC-type sulfate/ 97.2 0.0018 4E-08 60.5 8.2 29 11-39 24-52 (345)
443 cd03230 ABC_DR_subfamily_A Thi 97.2 0.0012 2.6E-08 58.5 7.0 29 11-39 22-50 (173)
444 PRK14530 adenylate kinase; Pro 97.1 0.00051 1.1E-08 63.3 4.7 30 16-45 4-33 (215)
445 COG2805 PilT Tfp pilus assembl 97.1 0.00069 1.5E-08 63.1 5.3 73 14-86 123-210 (353)
446 cd03223 ABCD_peroxisomal_ALDP 97.1 0.0042 9.1E-08 54.6 10.2 30 10-39 22-51 (166)
447 COG0529 CysC Adenylylsulfate k 97.1 0.0021 4.5E-08 55.1 7.7 42 11-52 19-63 (197)
448 PTZ00088 adenylate kinase 1; P 97.1 0.00058 1.3E-08 63.1 4.7 38 14-53 5-42 (229)
449 PTZ00363 rab-GDP dissociation 97.1 0.14 3.1E-06 52.4 22.4 194 296-533 225-428 (443)
450 PRK08773 2-octaprenyl-3-methyl 97.1 0.016 3.4E-07 58.9 15.7 56 303-358 113-169 (392)
451 COG4608 AppF ABC-type oligopep 97.1 0.0014 3.1E-08 60.5 7.1 106 11-128 35-170 (268)
452 TIGR02032 GG-red-SF geranylger 97.1 0.12 2.7E-06 49.9 21.3 55 304-358 92-148 (295)
453 COG1124 DppF ABC-type dipeptid 97.1 0.0026 5.6E-08 57.7 8.5 29 11-39 29-57 (252)
454 PF07156 Prenylcys_lyase: Pren 97.1 0.027 5.9E-07 55.9 16.4 63 295-360 120-189 (368)
455 TIGR01425 SRP54_euk signal rec 97.1 0.008 1.7E-07 60.5 12.7 74 13-86 98-194 (429)
456 cd02021 GntK Gluconate kinase 97.1 0.00054 1.2E-08 59.2 3.9 32 18-51 2-33 (150)
457 cd03246 ABCC_Protease_Secretio 97.1 0.0048 1E-07 54.7 10.1 29 11-39 24-52 (173)
458 PRK13900 type IV secretion sys 97.1 0.001 2.2E-08 65.1 6.2 73 13-85 158-246 (332)
459 PRK07333 2-octaprenyl-6-methox 97.1 0.047 1E-06 55.7 18.8 55 303-357 111-166 (403)
460 PRK08233 hypothetical protein; 97.1 0.0028 6.1E-08 56.6 8.6 34 16-49 4-38 (182)
461 COG0468 RecA RecA/RadA recombi 97.1 0.0041 9E-08 58.7 9.9 122 9-130 52-198 (279)
462 TIGR02525 plasmid_TraJ plasmid 97.1 0.0015 3.3E-08 64.7 7.3 72 14-85 148-236 (372)
463 PLN02200 adenylate kinase fami 97.1 0.00076 1.6E-08 62.7 4.9 40 12-53 40-79 (234)
464 cd03213 ABCG_EPDR ABCG transpo 97.1 0.0037 8E-08 56.5 9.3 30 10-39 30-59 (194)
465 PRK05057 aroK shikimate kinase 97.1 0.0007 1.5E-08 59.8 4.5 34 15-48 4-37 (172)
466 cd01130 VirB11-like_ATPase Typ 97.0 0.0017 3.7E-08 58.3 7.0 73 12-84 22-110 (186)
467 cd02019 NK Nucleoside/nucleoti 97.0 0.0011 2.4E-08 48.5 4.8 30 18-47 2-32 (69)
468 PF05272 VirE: Virulence-assoc 97.0 0.0044 9.5E-08 55.8 9.5 28 11-38 48-75 (198)
469 cd01125 repA Hexameric Replica 97.0 0.0032 6.9E-08 59.1 9.0 33 18-50 4-51 (239)
470 TIGR01313 therm_gnt_kin carboh 97.0 0.00056 1.2E-08 60.0 3.5 32 18-51 1-32 (163)
471 PRK05714 2-octaprenyl-3-methyl 97.0 0.06 1.3E-06 55.0 19.0 61 303-363 112-174 (405)
472 TIGR01988 Ubi-OHases Ubiquinon 97.0 0.04 8.7E-07 55.7 17.7 55 303-357 106-162 (385)
473 cd02020 CMPK Cytidine monophos 97.0 0.00065 1.4E-08 58.3 3.9 30 18-47 2-31 (147)
474 COG0654 UbiH 2-polyprenyl-6-me 97.0 0.052 1.1E-06 55.0 18.3 61 300-360 101-164 (387)
475 cd01428 ADK Adenylate kinase ( 97.0 0.00062 1.4E-08 61.6 3.9 33 18-52 2-34 (194)
476 PRK07588 hypothetical protein; 97.0 0.087 1.9E-06 53.5 20.0 56 303-358 103-158 (391)
477 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0019 4E-08 61.3 7.2 71 15-85 80-160 (264)
478 TIGR00064 ftsY signal recognit 97.0 0.011 2.3E-07 56.4 12.3 39 12-50 69-110 (272)
479 TIGR00767 rho transcription te 97.0 0.0055 1.2E-07 60.6 10.4 29 12-40 165-193 (415)
480 PF13245 AAA_19: Part of AAA d 97.0 0.0014 3.1E-08 48.8 5.0 25 15-39 10-35 (76)
481 cd03285 ABC_MSH2_euk MutS2 hom 97.0 0.007 1.5E-07 55.9 10.7 28 11-38 26-53 (222)
482 PRK13946 shikimate kinase; Pro 97.0 0.00068 1.5E-08 60.7 3.9 34 14-47 9-42 (184)
483 COG5245 DYN1 Dynein, heavy cha 97.0 0.0039 8.6E-08 69.5 10.1 185 12-206 1491-1717(3164)
484 cd03229 ABC_Class3 This class 97.0 0.0012 2.5E-08 58.9 5.3 29 11-39 22-50 (178)
485 PRK14528 adenylate kinase; Pro 97.0 0.0008 1.7E-08 60.4 4.2 35 16-52 2-36 (186)
486 cd02027 APSK Adenosine 5'-phos 97.0 0.0031 6.8E-08 54.2 7.7 34 18-51 2-38 (149)
487 PRK12724 flagellar biosynthesi 97.0 0.01 2.2E-07 59.2 12.1 71 14-84 222-309 (432)
488 PF00437 T2SE: Type II/IV secr 97.0 0.0012 2.6E-08 63.3 5.7 73 13-85 125-208 (270)
489 PRK10416 signal recognition pa 97.0 0.016 3.4E-07 56.5 13.4 38 12-49 111-151 (318)
490 PRK06834 hypothetical protein; 97.0 0.054 1.2E-06 56.6 18.3 55 304-358 101-156 (488)
491 PRK03731 aroL shikimate kinase 97.0 0.00093 2E-08 59.1 4.4 32 16-47 3-34 (171)
492 PRK13894 conjugal transfer ATP 97.0 0.0019 4.1E-08 62.9 6.8 72 13-84 146-229 (319)
493 PRK11259 solA N-methyltryptoph 96.9 0.053 1.1E-06 54.7 17.7 200 305-533 151-359 (376)
494 COG1127 Ttg2A ABC-type transpo 96.9 0.0028 6.1E-08 57.3 7.2 29 11-39 30-58 (263)
495 PRK05703 flhF flagellar biosyn 96.9 0.011 2.3E-07 60.1 12.4 38 14-51 220-262 (424)
496 COG2874 FlaH Predicted ATPases 96.9 0.0041 8.9E-08 55.1 7.9 116 12-137 25-176 (235)
497 PF01583 APS_kinase: Adenylyls 96.9 0.0011 2.5E-08 56.7 4.4 38 15-52 2-42 (156)
498 PRK06847 hypothetical protein; 96.9 0.11 2.3E-06 52.4 19.6 55 304-358 108-163 (375)
499 COG0563 Adk Adenylate kinase a 96.9 0.001 2.3E-08 58.8 4.3 34 17-52 2-35 (178)
500 PF06414 Zeta_toxin: Zeta toxi 96.9 0.0035 7.5E-08 57.0 7.9 43 12-54 12-55 (199)
No 1
>KOG0733|consensus
Probab=100.00 E-value=2.5e-43 Score=343.17 Aligned_cols=260 Identities=58% Similarity=0.996 Sum_probs=234.5
Q ss_pred CCCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCce
Q psy7673 1 MFPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 1 ~~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
++|+++|++| |...|.|||||||||||||.+|+++|++.+.+|+.|...+|+++|+|+++..++++|..++.+.|||
T Consensus 528 ~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCV 607 (802)
T KOG0733|consen 528 LAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCV 607 (802)
T ss_pred hhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeE
Confidence 5899999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHH
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKE 157 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 157 (541)
||+||+|.|++.+...+ .....++++.|+..||++..+.++.||++||+|+.+||+++|||||++.+++..|+.++|.+
T Consensus 608 IFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ 686 (802)
T KOG0733|consen 608 IFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVA 686 (802)
T ss_pred EEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHH
Confidence 99999999999988754 56678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHH
Q psy7673 158 ILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIA 237 (541)
Q Consensus 158 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a 237 (541)
||+...++ ..+++.+++|++.++....++||++.||..||++|...|.++....+......-........++..||++|
T Consensus 687 ILK~~tkn-~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA 765 (802)
T KOG0733|consen 687 ILKTITKN-TKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEA 765 (802)
T ss_pred HHHHHhcc-CCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHH
Confidence 99999997 45678899999999977777899999999999999999998876643322111111111456899999999
Q ss_pred HHhcCCCCChhhhhhhHHHhhhhcC
Q psy7673 238 LKRIKPSVSKADCKNYESLKQRYTT 262 (541)
Q Consensus 238 l~~~~~~~s~~~~~~~e~~~~~~~~ 262 (541)
+++++|++++++.+.|+.+.+.++-
T Consensus 766 ~~~i~pSv~~~dr~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 766 FQRIRPSVSERDRKKYDRLNKSRSL 790 (802)
T ss_pred HHhcCCCccHHHHHHHHHHhhhhcc
Confidence 9999999999999999999987653
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-43 Score=322.74 Aligned_cols=221 Identities=47% Similarity=0.772 Sum_probs=205.6
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++| |+.||+|||||||||||||.+||++|++.+..|+.+..++|..+|.|+....++.+|..|+...||||
T Consensus 169 LPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsII 248 (406)
T COG1222 169 LPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSII 248 (406)
T ss_pred ccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEE
Confidence 799999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||||.+..++-.. +......+.+-+|+++||++....++-||++||+++.|||+|+|||||++.|+|+.|+.+.|.
T Consensus 249 FiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~ 328 (406)
T COG1222 249 FIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRA 328 (406)
T ss_pred EEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHH
Confidence 999999999887543 223345677778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
+||+.+.++. .+.+++|++.++ +.++|+|+.||+++|.+|.+.|+++.... +|++||.+
T Consensus 329 ~Il~IHtrkM---~l~~dvd~e~la--~~~~g~sGAdlkaictEAGm~AiR~~R~~----------------Vt~~DF~~ 387 (406)
T COG1222 329 EILKIHTRKM---NLADDVDLELLA--RLTEGFSGADLKAICTEAGMFAIRERRDE----------------VTMEDFLK 387 (406)
T ss_pred HHHHHHhhhc---cCccCcCHHHHH--HhcCCCchHHHHHHHHHHhHHHHHhccCe----------------ecHHHHHH
Confidence 9999999986 477899999999 99999999999999999999999887654 99999999
Q ss_pred HHHhcCC
Q psy7673 237 ALKRIKP 243 (541)
Q Consensus 237 al~~~~~ 243 (541)
|.+++..
T Consensus 388 Av~KV~~ 394 (406)
T COG1222 388 AVEKVVK 394 (406)
T ss_pred HHHHHHh
Confidence 9998744
No 3
>KOG0730|consensus
Probab=100.00 E-value=4.8e-42 Score=339.38 Aligned_cols=239 Identities=51% Similarity=0.891 Sum_probs=225.3
Q ss_pred CCCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCce
Q psy7673 1 MFPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 1 ~~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
+||+.+|+.| |..+|++||||||||||||+++|++|++.+++|+.+.+.+++++|+|+++..++.+|+.++...|+|
T Consensus 451 ~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~I 530 (693)
T KOG0730|consen 451 EWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCI 530 (693)
T ss_pred hhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeE
Confidence 5899999998 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHH
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKE 157 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 157 (541)
||+||||.+...+.++ ......++++.|+++||++....+++|||+||+|+.||++++|||||++.|+++.|+.+.|.+
T Consensus 531 iFfDEiDsi~~~R~g~-~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~ 609 (693)
T KOG0730|consen 531 IFFDEIDALAGSRGGS-SSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLE 609 (693)
T ss_pred EehhhHHhHhhccCCC-ccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHH
Confidence 9999999999998754 337789999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHH
Q psy7673 158 ILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIA 237 (541)
Q Consensus 158 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a 237 (541)
||+..+++. +..+++|+..++ +.|+|||++||..+|++|...|+++..+. ..|+.+||++|
T Consensus 610 Ilk~~~kkm---p~~~~vdl~~La--~~T~g~SGAel~~lCq~A~~~a~~e~i~a--------------~~i~~~hf~~a 670 (693)
T KOG0730|consen 610 ILKQCAKKM---PFSEDVDLEELA--QATEGYSGAEIVAVCQEAALLALRESIEA--------------TEITWQHFEEA 670 (693)
T ss_pred HHHHHHhcC---CCCccccHHHHH--HHhccCChHHHHHHHHHHHHHHHHHhccc--------------ccccHHHHHHH
Confidence 999999985 566789999999 99999999999999999999999886542 46999999999
Q ss_pred HHhcCCCCChhhhhhhHHHhhh
Q psy7673 238 LKRIKPSVSKADCKNYESLKQR 259 (541)
Q Consensus 238 l~~~~~~~s~~~~~~~e~~~~~ 259 (541)
++..+++.+..+...|++|+++
T Consensus 671 l~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 671 LKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred HHhhcccCCHHHHHHHHHHhhc
Confidence 9999999999999999999865
No 4
>KOG0733|consensus
Probab=100.00 E-value=3.6e-40 Score=321.18 Aligned_cols=205 Identities=45% Similarity=0.794 Sum_probs=192.1
Q ss_pred CCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEE
Q psy7673 4 VKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 4 ~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
+.+|+.| |..||+|+|||||||||||++|+++|.+++++|+.|++.++++.+.|+++++++.+|+.++...|||+||
T Consensus 209 i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFi 288 (802)
T KOG0733|consen 209 IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFI 288 (802)
T ss_pred hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEe
Confidence 6778877 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCC----CCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGR----GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||.+.++++. .+....+++...|+..||++... .+|+||++||+|+.||++|+|+|||+++|.+..|++.+|.
T Consensus 289 DeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~ 367 (802)
T KOG0733|consen 289 DEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETARE 367 (802)
T ss_pred ecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHH
Confidence 999999999887 46677899999999999998654 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhccc
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVE 214 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~ 214 (541)
+||+.+++... +..++|+..+| +.|.||.+.||.+||..|...|++|..+..+
T Consensus 368 ~IL~~~~~~lr---l~g~~d~~qlA--~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 368 EILRIICRGLR---LSGDFDFKQLA--KLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred HHHHHHHhhCC---CCCCcCHHHHH--hcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999764 55689999999 9999999999999999999999999887554
No 5
>KOG0738|consensus
Probab=100.00 E-value=2.3e-40 Score=306.79 Aligned_cols=255 Identities=36% Similarity=0.647 Sum_probs=229.8
Q ss_pred CCCCCchhhc-C-CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 1 MFPVKYPKLF-G-KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 1 ~~~~~~~~~~-~-~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
|+|+.+|+.| | .+|=++||++||||||||+||+++|.+++..|+-|+.+.+.+++.|++++.++-+|+-++...|++|
T Consensus 229 vlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStI 308 (491)
T KOG0738|consen 229 VLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTI 308 (491)
T ss_pred hhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCcee
Confidence 6899999999 3 6677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCC----CCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGR----GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQD 154 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~ 154 (541)
||||||.|+..+....+.+..+++.++|+.++|+.... .-|+|+|+||.|.+||++++| ||.+.|.++.|+.+.
T Consensus 309 FiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~ 386 (491)
T KOG0738|consen 309 FIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEA 386 (491)
T ss_pred ehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHH
Confidence 99999999999999888889999999999999987532 238999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCC-CccccccCHHH
Q psy7673 155 RKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGID-DTEQVTIGFRH 233 (541)
Q Consensus 155 r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~-~~~~~~i~~~d 233 (541)
|..+++..++.. ...++++++.++ ..++|||+.||.++|+.|.+.+.+|.........-.... .....+++.+|
T Consensus 387 R~~Li~~~l~~~---~~~~~~~~~~la--e~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~D 461 (491)
T KOG0738|consen 387 RSALIKILLRSV---ELDDPVNLEDLA--ERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNED 461 (491)
T ss_pred HHHHHHHhhccc---cCCCCccHHHHH--HHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhh
Confidence 999999999975 567889999999 999999999999999999999999877665433222111 11125699999
Q ss_pred HHHHHHhcCCCCChhhhhhhHHHhhhhcC
Q psy7673 234 FDIALKRIKPSVSKADCKNYESLKQRYTT 262 (541)
Q Consensus 234 ~~~al~~~~~~~s~~~~~~~e~~~~~~~~ 262 (541)
|++|+++++|+++...+..|++|.+.|++
T Consensus 462 fe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 462 FEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999986
No 6
>KOG0736|consensus
Probab=100.00 E-value=1.2e-38 Score=318.27 Aligned_cols=255 Identities=46% Similarity=0.825 Sum_probs=229.8
Q ss_pred CCCCchhhc--CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEE
Q psy7673 2 FPVKYPKLF--GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIF 79 (541)
Q Consensus 2 ~~~~~~~~~--~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~ 79 (541)
+|+++|++| |.++..|||||||||||||.+||++|.++...|+.|...++.+.|+|+++++++.+|++|+..+|||||
T Consensus 690 lPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIF 769 (953)
T KOG0736|consen 690 LPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIF 769 (953)
T ss_pred CcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEE
Confidence 699999999 566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCccccCCCCCCCCCC-hhHHHHHHHHHHhcCCC--CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCC-CHHHH
Q psy7673 80 FDEIDALCPKRSSLGDNN-SSMRIVNQLLTEMDGFE--GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLP-NEQDR 155 (541)
Q Consensus 80 iDe~d~l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~--~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p-~~~~r 155 (541)
+||+|.++|+|..+++.. ...++.+.|+.++|+++ +...++||++||+|+.|||+|+|||||++-+++.++ +.+.+
T Consensus 770 FDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk 849 (953)
T KOG0736|consen 770 FDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESK 849 (953)
T ss_pred eccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHH
Confidence 999999999998776655 45789999999999997 456799999999999999999999999999999988 67888
Q ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHhhhhc-CCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcC-CCCCccccccCHHH
Q psy7673 156 KEILLALTKQGKDPMMGEDVDFDKIAADERC-EGFSGADLEQLVKEAREQAILEIVNSVENDDQA-GIDDTEQVTIGFRH 233 (541)
Q Consensus 156 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~-~~~~~~~~~i~~~d 233 (541)
..+|+...++. .+.+++|+.++| +.+ ..|++.|+-+||..|+..|++|..+.++..... .+.......+++||
T Consensus 850 ~~vL~AlTrkF---kLdedVdL~eiA--k~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eD 924 (953)
T KOG0736|consen 850 LRVLEALTRKF---KLDEDVDLVEIA--KKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMED 924 (953)
T ss_pred HHHHHHHHHHc---cCCCCcCHHHHH--hhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHH
Confidence 89999999986 478999999999 554 579999999999999999999988776644222 34455677899999
Q ss_pred HHHHHHhcCCCCChhhhhhhHHHhhhhc
Q psy7673 234 FDIALKRIKPSVSKADCKNYESLKQRYT 261 (541)
Q Consensus 234 ~~~al~~~~~~~s~~~~~~~e~~~~~~~ 261 (541)
|.++.+++.|++|.++...|+.+..+|.
T Consensus 925 flks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 925 FLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999999887764
No 7
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.3e-36 Score=262.89 Aligned_cols=218 Identities=38% Similarity=0.642 Sum_probs=199.6
Q ss_pred CCchhhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCC
Q psy7673 4 VKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEI 83 (541)
Q Consensus 4 ~~~~~~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~ 83 (541)
|.+|+.||.=.|+++|||||||||||++++++|++...+++.++..+++++++|+....++.++..++...|||+||||+
T Consensus 140 LenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~ 219 (368)
T COG1223 140 LENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDEL 219 (368)
T ss_pred hhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHH
Q psy7673 84 DALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 84 d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~ 163 (541)
|.+.-++.-+........+.+.|+..+|++..+.+++.||+||+++.||+++++ ||...|+|..|+.+||..|++.++
T Consensus 220 DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 220 DAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred hhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHH
Confidence 999988766555556788999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHH-HHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 164 KQGKDPMMGEDVDFDKIAADERCEGFSGADLE-QLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~-~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
... ++.-+.++..++ +.|.|+|+|||. .++..|...|+.+.... |+.+|++.|+++.+
T Consensus 298 k~~---Plpv~~~~~~~~--~~t~g~SgRdikekvlK~aLh~Ai~ed~e~----------------v~~edie~al~k~r 356 (368)
T COG1223 298 KKF---PLPVDADLRYLA--AKTKGMSGRDIKEKVLKTALHRAIAEDREK----------------VEREDIEKALKKER 356 (368)
T ss_pred HhC---CCccccCHHHHH--HHhCCCCchhHHHHHHHHHHHHHHHhchhh----------------hhHHHHHHHHHhhc
Confidence 985 455567788888 899999999998 56788888888776655 99999999999865
Q ss_pred CC
Q psy7673 243 PS 244 (541)
Q Consensus 243 ~~ 244 (541)
+.
T Consensus 357 ~~ 358 (368)
T COG1223 357 KR 358 (368)
T ss_pred cc
Confidence 54
No 8
>KOG0734|consensus
Probab=100.00 E-value=6.4e-36 Score=287.14 Aligned_cols=216 Identities=45% Similarity=0.726 Sum_probs=199.5
Q ss_pred CCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEE
Q psy7673 4 VKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 4 ~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
|++|+.| |++.|+||||.||||||||.|+|++|.+.+++|++...++|-..++|....+++.+|..++.+.||||||
T Consensus 323 LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFI 402 (752)
T KOG0734|consen 323 LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFI 402 (752)
T ss_pred hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEE
Confidence 3456665 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHH
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILL 160 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~ 160 (541)
||||.+..++..... ...++.++.|+..+|++..+.+++||++||.|+.||++|.|||||++.|.++.||..-|.+||+
T Consensus 403 DEiDavG~kR~~~~~-~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~ 481 (752)
T KOG0734|consen 403 DEIDAVGGKRNPSDQ-HYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILK 481 (752)
T ss_pred echhhhcccCCccHH-HHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHH
Confidence 999999998876533 3789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHh
Q psy7673 161 ALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKR 240 (541)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 240 (541)
.++.+. ...+++|...+| +-|.||++.||.+|++.|+..|....... +++++++.|-++
T Consensus 482 ~yl~ki---~~~~~VD~~iiA--RGT~GFsGAdLaNlVNqAAlkAa~dga~~----------------VtM~~LE~akDr 540 (752)
T KOG0734|consen 482 LYLSKI---PLDEDVDPKIIA--RGTPGFSGADLANLVNQAALKAAVDGAEM----------------VTMKHLEFAKDR 540 (752)
T ss_pred HHHhcC---CcccCCCHhHhc--cCCCCCchHHHHHHHHHHHHHHHhcCccc----------------ccHHHHhhhhhh
Confidence 999974 567899999999 99999999999999999999998765543 999999999876
Q ss_pred c
Q psy7673 241 I 241 (541)
Q Consensus 241 ~ 241 (541)
+
T Consensus 541 I 541 (752)
T KOG0734|consen 541 I 541 (752)
T ss_pred e
Confidence 5
No 9
>KOG0739|consensus
Probab=100.00 E-value=2.2e-35 Score=264.23 Aligned_cols=256 Identities=34% Similarity=0.648 Sum_probs=221.8
Q ss_pred CCCCCchhhc--CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 1 MFPVKYPKLF--GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+||+++|.+| ++.|-+++|||||||||||+|++++|.+.+..|+.|+.+++.+++.|++++.++++|+-++.+.|+||
T Consensus 150 ILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSII 229 (439)
T KOG0739|consen 150 ILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSII 229 (439)
T ss_pred eecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEE
Confidence 6899999999 45677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC-CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKE 157 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 157 (541)
||||||.+++.+..+ ++...+++..+|+-++.+.- ++.+++|+++||-|..||.+++| ||.+.|+++.|+...|..
T Consensus 230 FiDEiDslcg~r~en-EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~ 306 (439)
T KOG0739|consen 230 FIDEIDSLCGSRSEN-ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAR 306 (439)
T ss_pred EeehhhhhccCCCCC-chHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhh
Confidence 999999999988774 56677899999999998864 45679999999999999999999 999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhc-----ccCC----------------
Q psy7673 158 ILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNS-----VEND---------------- 216 (541)
Q Consensus 158 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~-----~~~~---------------- 216 (541)
+++..+... +..-.+-|+..++ ++|+|||+.||.-+|+.|.+..+++..+. +...
T Consensus 307 MF~lhlG~t--p~~LT~~d~~eL~--~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspg 382 (439)
T KOG0739|consen 307 MFKLHLGDT--PHVLTEQDFKELA--RKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPG 382 (439)
T ss_pred hheeccCCC--ccccchhhHHHHH--hhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCC
Confidence 999988864 3344566889999 99999999999999999998888775531 1110
Q ss_pred CcCC---------CCCccccccCHHHHHHHHHhcCCCCChhhhhhhHHHhhhhcCc
Q psy7673 217 DQAG---------IDDTEQVTIGFRHFDIALKRIKPSVSKADCKNYESLKQRYTTP 263 (541)
Q Consensus 217 ~~~~---------~~~~~~~~i~~~d~~~al~~~~~~~s~~~~~~~e~~~~~~~~~ 263 (541)
++.. -+....+++|+.||..++...+|.++..++...+.|.+.|+..
T Consensus 383 d~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGqE 438 (439)
T KOG0739|consen 383 DPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQE 438 (439)
T ss_pred CcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhccC
Confidence 0000 0122356799999999999999999999999999999998863
No 10
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.3e-34 Score=308.10 Aligned_cols=256 Identities=50% Similarity=0.833 Sum_probs=225.0
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|+++ |..+++++||+||||||||++++++|++++.+++.++++++.+++.|+++..++.+|..++...|+||
T Consensus 471 ~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~ii 550 (733)
T TIGR01243 471 WPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAII 550 (733)
T ss_pred hhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEE
Confidence 688899987 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
||||+|.+++.+..........++++.|+..++++....+++||+|||.++.+|++++|+|||++.|+++.|+.++|.+|
T Consensus 551 fiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i 630 (733)
T TIGR01243 551 FFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEI 630 (733)
T ss_pred EEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHH
Confidence 99999999988765444455678899999999998878889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCC--cCCCCCccccccCHHHHHH
Q psy7673 159 LLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD--QAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~--~~~~~~~~~~~i~~~d~~~ 236 (541)
|+...++. ....++++..++ +.|+||+++||.++|++|...|+.+.......+. ....+......|+.+||.+
T Consensus 631 ~~~~~~~~---~~~~~~~l~~la--~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~ 705 (733)
T TIGR01243 631 FKIHTRSM---PLAEDVDLEELA--EMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLE 705 (733)
T ss_pred HHHHhcCC---CCCccCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHH
Confidence 99887754 356788999999 8999999999999999999999988654322110 0111122345799999999
Q ss_pred HHHhcCCCCChhhhhhhHHHhhhhcC
Q psy7673 237 ALKRIKPSVSKADCKNYESLKQRYTT 262 (541)
Q Consensus 237 al~~~~~~~s~~~~~~~e~~~~~~~~ 262 (541)
|+++++|+.+.+++..|++|.+.|+.
T Consensus 706 al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 706 ALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998864
No 11
>KOG0737|consensus
Probab=100.00 E-value=3.4e-34 Score=266.22 Aligned_cols=254 Identities=35% Similarity=0.599 Sum_probs=217.2
Q ss_pred CCCCCchhhc--C--CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCc
Q psy7673 1 MFPVKYPKLF--G--KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPC 76 (541)
Q Consensus 1 ~~~~~~~~~~--~--~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (541)
|+|+.+|++| | .++++||||+||||||||++|+++|++.+.+|+-|..+.+.++++|+.++..+.+|.-+..-+|+
T Consensus 109 ilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~ 188 (386)
T KOG0737|consen 109 ILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPS 188 (386)
T ss_pred hhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcc
Confidence 6899999999 2 66999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCC--eEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHH
Q psy7673 77 VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGG--VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQD 154 (541)
Q Consensus 77 il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~ 154 (541)
||||||+|.++..+ ...+.+....+.++|+...|++.++.+ ++|+++||+|.++|++++| |+++.++++.|+.++
T Consensus 189 iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~q 265 (386)
T KOG0737|consen 189 IIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQ 265 (386)
T ss_pred eeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhh
Confidence 99999999999998 455666777888999999999876654 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcc-cCCCcCC-----------CC
Q psy7673 155 RKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSV-ENDDQAG-----------ID 222 (541)
Q Consensus 155 r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~-~~~~~~~-----------~~ 222 (541)
|.+||+-++... .+.+++|+..++ ..|.|||+.||+++|..|...++++....- ...+... ..
T Consensus 266 R~kILkviLk~e---~~e~~vD~~~iA--~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~ 340 (386)
T KOG0737|consen 266 RRKILKVILKKE---KLEDDVDLDEIA--QMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAAS 340 (386)
T ss_pred HHHHHHHHhccc---ccCcccCHHHHH--HhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCccccc
Confidence 999999999986 466899999999 999999999999999999999999887652 0000000 00
Q ss_pred CccccccCHHHHHHHHHhcCCCCChh--hhhhhHHHhhhhcC
Q psy7673 223 DTEQVTIGFRHFDIALKRIKPSVSKA--DCKNYESLKQRYTT 262 (541)
Q Consensus 223 ~~~~~~i~~~d~~~al~~~~~~~s~~--~~~~~e~~~~~~~~ 262 (541)
.-...+++.+||.+|.+.+.++++.+ .+...+.|.+.|++
T Consensus 341 ~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 341 SCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred ccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 11257899999999999877764433 34455566555554
No 12
>KOG0728|consensus
Probab=100.00 E-value=2.4e-33 Score=245.27 Aligned_cols=221 Identities=42% Similarity=0.706 Sum_probs=202.1
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+++|++| |+..|.++|||||||+|||.+++++|+...+.|+.++.+++..+|.|+.....+.+|--++...|+||
T Consensus 165 LPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsii 244 (404)
T KOG0728|consen 165 LPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSII 244 (404)
T ss_pred ccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceE
Confidence 799999998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCC--CChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGD--NNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
|+||||.+...+...+. .+...+..-+|+++++++....++-||.+||+.+-+|++++||||+++.|+|++|+++.|.
T Consensus 245 fmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~ 324 (404)
T KOG0728|consen 245 FMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARL 324 (404)
T ss_pred eeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHH
Confidence 99999999988765433 3344566677888899998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
+||+..-++.+ +...+++..+| +...|.|+.+++..|.+|.+.|.++.+ .++|.|||+-
T Consensus 325 ~ilkihsrkmn---l~rgi~l~kia--ekm~gasgaevk~vcteagm~alrerr----------------vhvtqedfem 383 (404)
T KOG0728|consen 325 DILKIHSRKMN---LTRGINLRKIA--EKMPGASGAEVKGVCTEAGMYALRERR----------------VHVTQEDFEM 383 (404)
T ss_pred HHHHHhhhhhc---hhcccCHHHHH--HhCCCCccchhhhhhhhhhHHHHHHhh----------------ccccHHHHHH
Confidence 99999988764 66789999999 899999999999999999999987755 4599999999
Q ss_pred HHHhcCC
Q psy7673 237 ALKRIKP 243 (541)
Q Consensus 237 al~~~~~ 243 (541)
|..++..
T Consensus 384 av~kvm~ 390 (404)
T KOG0728|consen 384 AVAKVMQ 390 (404)
T ss_pred HHHHHHh
Confidence 9887744
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=8e-33 Score=279.17 Aligned_cols=230 Identities=30% Similarity=0.478 Sum_probs=202.4
Q ss_pred hcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 9 LFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 9 ~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
.+|.++|+++||+||||||||++++++|++++.+++.++++.+.+.+.|+.+..++.+|..+....|+||||||+|.++.
T Consensus 253 ~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~ 332 (489)
T CHL00195 253 NYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFS 332 (489)
T ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhc
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD 168 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~ 168 (541)
.+...++.....+++..|+..+++ ...+++||+|||.++.+|++++|+|||++.|+++.|+.++|.+|++.++.+...
T Consensus 333 ~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~ 410 (489)
T CHL00195 333 NSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP 410 (489)
T ss_pred cccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC
Confidence 655545556678888899988874 345689999999999999999999999999999999999999999999987542
Q ss_pred CCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCCCC--C
Q psy7673 169 PMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKPSV--S 246 (541)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~--s 246 (541)
....+.++..++ +.|+|||++||.++|..|...|..+. ..++.+||..|++.+.|.. .
T Consensus 411 -~~~~~~dl~~La--~~T~GfSGAdI~~lv~eA~~~A~~~~-----------------~~lt~~dl~~a~~~~~Pls~~~ 470 (489)
T CHL00195 411 -KSWKKYDIKKLS--KLSNKFSGAEIEQSIIEAMYIAFYEK-----------------REFTTDDILLALKQFIPLAQTE 470 (489)
T ss_pred -CcccccCHHHHH--hhcCCCCHHHHHHHHHHHHHHHHHcC-----------------CCcCHHHHHHHHHhcCCCcccC
Confidence 223467889999 99999999999999999998886432 2489999999999999974 5
Q ss_pred hhhhhhhHHHhhhh
Q psy7673 247 KADCKNYESLKQRY 260 (541)
Q Consensus 247 ~~~~~~~e~~~~~~ 260 (541)
.+++..+++|+..-
T Consensus 471 ~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 471 KEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHHHHHHcC
Confidence 56888999988754
No 14
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=271.93 Aligned_cols=221 Identities=39% Similarity=0.675 Sum_probs=195.7
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++| |..+|+++||+||||||||++++++|++++.+++.+.++++...+.++....++.+|..+....|+||
T Consensus 163 ~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~IL 242 (398)
T PTZ00454 163 LPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSII 242 (398)
T ss_pred HHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEE
Confidence 588999887 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCC--CCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLG--DNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||+|.++.++.... ......+.+..++..++++....++.||++||.++.+|++++|+|||++.|+|+.|+.++|.
T Consensus 243 fIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~ 322 (398)
T PTZ00454 243 FIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 322 (398)
T ss_pred EEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHH
Confidence 9999999987763321 22234567788888888877777899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
.|++.++.+. .+..++++..++ ..|+||+++||.++|+.|...|+++.. ..|+.+||.+
T Consensus 323 ~Il~~~~~~~---~l~~dvd~~~la--~~t~g~sgaDI~~l~~eA~~~A~r~~~----------------~~i~~~df~~ 381 (398)
T PTZ00454 323 LIFQTITSKM---NLSEEVDLEDFV--SRPEKISAADIAAICQEAGMQAVRKNR----------------YVILPKDFEK 381 (398)
T ss_pred HHHHHHHhcC---CCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHcCC----------------CccCHHHHHH
Confidence 9999998864 355788999999 899999999999999999999987643 2599999999
Q ss_pred HHHhcCC
Q psy7673 237 ALKRIKP 243 (541)
Q Consensus 237 al~~~~~ 243 (541)
|+.....
T Consensus 382 A~~~v~~ 388 (398)
T PTZ00454 382 GYKTVVR 388 (398)
T ss_pred HHHHHHh
Confidence 9998744
No 15
>KOG0735|consensus
Probab=100.00 E-value=1.9e-32 Score=271.49 Aligned_cols=247 Identities=44% Similarity=0.811 Sum_probs=209.1
Q ss_pred CCCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCce
Q psy7673 1 MFPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 1 ~~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
+||-++|.+| ..+.+.|||||||||||||.++-++|..++.+|+.+...++.++|.|.++++++.+|.+++..+|||
T Consensus 684 ~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCi 763 (952)
T KOG0735|consen 684 EWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCI 763 (952)
T ss_pred hccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeE
Confidence 5899999999 5778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHH
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKE 157 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 157 (541)
||+||+|.++|++... .-....++.+.|+.++|+...-.++.|+|+|.+|+.+||+|+||||+++.+..+.|++.+|.+
T Consensus 764 LFFDEfdSiAPkRGhD-sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~ 842 (952)
T KOG0735|consen 764 LFFDEFDSIAPKRGHD-STGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLE 842 (952)
T ss_pred EEeccccccCcccCCC-CCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHH
Confidence 9999999999998652 333557899999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHH
Q psy7673 158 ILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIA 237 (541)
Q Consensus 158 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a 237 (541)
|++.+.... ...+++|++.+| .+|+||++.||..|+..|...|..+..+....+ ...+.++...+...
T Consensus 843 il~~ls~s~---~~~~~vdl~~~a--~~T~g~tgADlq~ll~~A~l~avh~~l~~~~~~-------~~~p~~~~~~~~si 910 (952)
T KOG0735|consen 843 ILQVLSNSL---LKDTDVDLECLA--QKTDGFTGADLQSLLYNAQLAAVHEILKREDEE-------GVVPSIDDASLESI 910 (952)
T ss_pred HHHHHhhcc---CCccccchHHHh--hhcCCCchhhHHHHHHHHHHHHHHHHHHhcCcc-------ccCCccchhhhhhh
Confidence 999998864 467899999999 999999999999999999999999988763211 11122333333333
Q ss_pred H--HhcCCCCChhhhhhhHHHhhhh
Q psy7673 238 L--KRIKPSVSKADCKNYESLKQRY 260 (541)
Q Consensus 238 l--~~~~~~~s~~~~~~~e~~~~~~ 260 (541)
. ++.+|+.+.-+...+.+..-++
T Consensus 911 ~~~~~~~~s~~~~~~~~~~~~~~~~ 935 (952)
T KOG0735|consen 911 FSDSKRKPSRSALDNRKGQDVYSQF 935 (952)
T ss_pred hhccCCCccccccchhhhhhHHHhh
Confidence 3 3555665555555555544333
No 16
>KOG0727|consensus
Probab=100.00 E-value=9.9e-33 Score=241.78 Aligned_cols=219 Identities=40% Similarity=0.694 Sum_probs=198.4
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+.+++ |+.||+|+|+|||||||||++++++|+.....|+.+..++|..+|.|+.....+.+|.-++.+.|+||
T Consensus 173 lplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsii 252 (408)
T KOG0727|consen 173 LPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSII 252 (408)
T ss_pred ccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEE
Confidence 688887776 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCC--CCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSS--LGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||+|.+..++=. .+......+++-+|+++++++....++-||.+||+.+.+||+++||||+++.|+|+.|+..+++
T Consensus 253 fideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkr 332 (408)
T KOG0727|consen 253 FIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 332 (408)
T ss_pred EeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhh
Confidence 99999999877632 2344456778888999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
-++..+..+. .+.+++|++.+. .+-+..|+.||..+|+.|.+.|.++.. -.+...||++
T Consensus 333 lvf~titskm---~ls~~vdle~~v--~rpdkis~adi~aicqeagm~avr~nr----------------yvvl~kd~e~ 391 (408)
T KOG0727|consen 333 LVFSTITSKM---NLSDEVDLEDLV--ARPDKISGADINAICQEAGMLAVRENR----------------YVVLQKDFEK 391 (408)
T ss_pred hhHHhhhhcc---cCCcccCHHHHh--cCccccchhhHHHHHHHHhHHHHHhcc----------------eeeeHHHHHH
Confidence 9999999876 467889999988 788899999999999999999987754 3588999999
Q ss_pred HHHhc
Q psy7673 237 ALKRI 241 (541)
Q Consensus 237 al~~~ 241 (541)
|.+..
T Consensus 392 ay~~~ 396 (408)
T KOG0727|consen 392 AYKTV 396 (408)
T ss_pred HHHhh
Confidence 98764
No 17
>KOG1276|consensus
Probab=100.00 E-value=1.5e-31 Score=251.99 Aligned_cols=245 Identities=31% Similarity=0.517 Sum_probs=217.2
Q ss_pred hhhhcccccccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEe-CCcEEEEecC--c-eeEeeCEEEEcCChhHHHh
Q psy7673 287 RSRIEKWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFL-EKGVKVTLNN--D-QHIEANHVVSALPAPKLGM 361 (541)
Q Consensus 287 ~~~~~~~~~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~-~~~~~v~~~~--g-~~~~ad~VI~t~P~~~~~~ 361 (541)
..+.+++.+|.++||++.+++++.+.| ...+.|.++.++..+... .++|.+++.+ + ..+..+++..|+|++.++.
T Consensus 233 ~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ 312 (491)
T KOG1276|consen 233 QAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAK 312 (491)
T ss_pred hhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhh
Confidence 667788899999999999999999999 455789999999999865 4558877643 3 2456677778999999999
Q ss_pred hhcccCchhHhhhcCCCCccEEEEEEeeCC--CCCCCCccEEEec--CCCCCCceEEEeecccccCCCcE-EEEEEecCc
Q psy7673 362 LLHKQHPTLGNLLSSIEHVNVAVINLAYEN--IPMKQNAFGFLVP--PREKLPILGVVFDSCCFEQADWT-ILTVMMGGA 436 (541)
Q Consensus 362 ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~--~~~~~~~~g~l~~--~~~~~~~~~~~~~s~~~~~~~~~-~l~~~~~g~ 436 (541)
++++..+.+..++.+++|.++.+|+++|+. ...+.+|||+++| ..++..++|++|||..|+.+... .+++|++|.
T Consensus 313 ll~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~ 392 (491)
T KOG1276|consen 313 LLRGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGG 392 (491)
T ss_pred hccccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEeccc
Confidence 999999999999999999999999999976 6788899999999 66777899999999999986654 999999999
Q ss_pred cCCccc-CCCCHHHHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCC-CCEEEEcCCCCC
Q psy7673 437 WYDTYF-KGQSKEYILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQ-LPLYLTGSSYDG 514 (541)
Q Consensus 437 ~~~~~~-~~~~~e~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~-~~l~laG~~~~g 514 (541)
|.+.+. ...++|++++.+.++|+++||+...|....++-|++|+|||++||+.++.+++.++++.. .+|++||+|+.|
T Consensus 393 ~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~G 472 (491)
T KOG1276|consen 393 GSTNTSLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGG 472 (491)
T ss_pred ccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCC
Confidence 998653 237899999999999999999999999999999999999999999999999999887653 689999999999
Q ss_pred CChHHHHHHHHHHHHHH
Q psy7673 515 VGVNDVIALSKKAVESI 531 (541)
Q Consensus 515 ~~v~~ai~sg~~aa~~i 531 (541)
.+|++||.+|+.+|.++
T Consensus 473 v~vgdcI~sg~~~A~~v 489 (491)
T KOG1276|consen 473 VSVGDCIESGRKTAVEV 489 (491)
T ss_pred CChhHHHHhhHHHHHhh
Confidence 99999999999999877
No 18
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=1.5e-31 Score=277.64 Aligned_cols=238 Identities=27% Similarity=0.442 Sum_probs=211.9
Q ss_pred ccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhh
Q psy7673 294 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNL 373 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~ 373 (541)
.++++.+||++|+++|++.++. ++|+++++|++|.+++++|+|++.+|+++.||+||+|+|++++.+++++.++...++
T Consensus 216 ~~~~~~gG~~~l~~~l~~~l~~-~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~ 294 (462)
T TIGR00562 216 DFQTLATGLETLPEEIEKRLKL-TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLLSELSNSASSH 294 (462)
T ss_pred ceEecchhHHHHHHHHHHHhcc-CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHHhcccCHHHHHH
Confidence 3688999999999999999953 489999999999999889999888887899999999999999999998888888899
Q ss_pred hcCCCCccEEEEEEeeCCCCCC--CCccEEEecCCCCCCceEEEeecccccC---CCcEEEEEEecCccCCcccCCCCHH
Q psy7673 374 LSSIEHVNVAVINLAYENIPMK--QNAFGFLVPPREKLPILGVVFDSCCFEQ---ADWTILTVMMGGAWYDTYFKGQSKE 448 (541)
Q Consensus 374 l~~~~~~~~~~v~l~~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~s~~~~~---~~~~~l~~~~~g~~~~~~~~~~~~e 448 (541)
++++.|.+++++++.|+++++. ..++|++++..+..++.+++|+|++++. .+.+++++|++|.++.++.. .+++
T Consensus 295 l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~-~~~e 373 (462)
T TIGR00562 295 LDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVD-LSEN 373 (462)
T ss_pred HhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccC-CCHH
Confidence 9999999999999999875443 4679999987777678899999988864 35678999998877777665 8999
Q ss_pred HHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHHH
Q psy7673 449 YILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAV 528 (541)
Q Consensus 449 ~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~aa 528 (541)
++++.++++|++++|++.+|.+..+++|++|+|+|.+||...++.+++.+....++|++||||+.|.++++||.||.++|
T Consensus 374 e~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i~~~i~sg~~~a 453 (462)
T TIGR00562 374 EIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGKAAA 453 (462)
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcHHHHHHHHHHHH
Confidence 99999999999999988779999999999999999999999999988777766679999999999999999999999999
Q ss_pred HHHhh
Q psy7673 529 ESIKW 533 (541)
Q Consensus 529 ~~i~~ 533 (541)
++|+.
T Consensus 454 ~~~~~ 458 (462)
T TIGR00562 454 SDVLT 458 (462)
T ss_pred HHHHH
Confidence 99943
No 19
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.8e-32 Score=269.73 Aligned_cols=224 Identities=48% Similarity=0.772 Sum_probs=195.3
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++| |..+|+++||+||||||||++++++|++++.+++.++++++...+.++....++.+|..+....|+||
T Consensus 149 ~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il 228 (389)
T PRK03992 149 LPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSII 228 (389)
T ss_pred HHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEE
Confidence 578888876 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCC--ChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDN--NSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||+|.+...+...... ....+.+..++..++.+....++.||+|||.++.+|++++++|||+..|+|+.|+.++|.
T Consensus 229 fiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~ 308 (389)
T PRK03992 229 FIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRL 308 (389)
T ss_pred EEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHH
Confidence 999999998776543221 223455666777777776667899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
+|++.++... ....++++..++ ..|+||+++||.++|++|...|+++.. ..|+.+||.+
T Consensus 309 ~Il~~~~~~~---~~~~~~~~~~la--~~t~g~sgadl~~l~~eA~~~a~~~~~----------------~~i~~~d~~~ 367 (389)
T PRK03992 309 EILKIHTRKM---NLADDVDLEELA--ELTEGASGADLKAICTEAGMFAIRDDR----------------TEVTMEDFLK 367 (389)
T ss_pred HHHHHHhccC---CCCCcCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHcCC----------------CCcCHHHHHH
Confidence 9999998864 344668899999 899999999999999999999987632 2499999999
Q ss_pred HHHhcCCCCC
Q psy7673 237 ALKRIKPSVS 246 (541)
Q Consensus 237 al~~~~~~~s 246 (541)
|++.++++..
T Consensus 368 A~~~~~~~~~ 377 (389)
T PRK03992 368 AIEKVMGKEE 377 (389)
T ss_pred HHHHHhcccc
Confidence 9999988744
No 20
>KOG0731|consensus
Probab=100.00 E-value=4.2e-32 Score=277.64 Aligned_cols=221 Identities=47% Similarity=0.773 Sum_probs=201.3
Q ss_pred CCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEE
Q psy7673 4 VKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 4 ~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
|++|+.| |...|+|+||+||||||||.||+++|.+.++||+.++.++|...+.+....+++.+|..++.+.|+|+||
T Consensus 330 LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifi 409 (774)
T KOG0731|consen 330 LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFI 409 (774)
T ss_pred hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEe
Confidence 5678877 9999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred cCCccccCCCC---CCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHH
Q psy7673 81 DEIDALCPKRS---SLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKE 157 (541)
Q Consensus 81 De~d~l~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 157 (541)
||||.+...+. ..+.+....+.++.|+..+|++....+++|+++||+++-+|++++|||||++.|.++.|+...|.+
T Consensus 410 deida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~ 489 (774)
T KOG0731|consen 410 DEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRAS 489 (774)
T ss_pred cccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHH
Confidence 99999998885 334566778899999999999988888999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHH
Q psy7673 158 ILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIA 237 (541)
Q Consensus 158 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a 237 (541)
|++.+++.... ..+++++..++ ..|.||++.||.++|++|...|.++.... |+..||..|
T Consensus 490 i~~~h~~~~~~--~~e~~dl~~~a--~~t~gf~gadl~n~~neaa~~a~r~~~~~----------------i~~~~~~~a 549 (774)
T KOG0731|consen 490 ILKVHLRKKKL--DDEDVDLSKLA--SLTPGFSGADLANLCNEAALLAARKGLRE----------------IGTKDLEYA 549 (774)
T ss_pred HHHHHhhccCC--CcchhhHHHHH--hcCCCCcHHHHHhhhhHHHHHHHHhccCc----------------cchhhHHHH
Confidence 99999998642 25778888877 99999999999999999999998876654 999999999
Q ss_pred HHhcCCC
Q psy7673 238 LKRIKPS 244 (541)
Q Consensus 238 l~~~~~~ 244 (541)
++.....
T Consensus 550 ~~Rvi~G 556 (774)
T KOG0731|consen 550 IERVIAG 556 (774)
T ss_pred HHHHhcc
Confidence 9955443
No 21
>KOG0652|consensus
Probab=100.00 E-value=2.3e-32 Score=240.54 Aligned_cols=220 Identities=35% Similarity=0.637 Sum_probs=198.0
Q ss_pred CCCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCce
Q psy7673 1 MFPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 1 ~~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
|+|+.+++.| |++||.|+|+|||||||||.++|+.|.+.+..|..+-...+...|.|...+.++..|.-++...|+|
T Consensus 188 VLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~I 267 (424)
T KOG0652|consen 188 VLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTI 267 (424)
T ss_pred ccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeE
Confidence 6899998887 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCccccCCCCCCCCCCh---hHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHH
Q psy7673 78 IFFDEIDALCPKRSSLGDNNS---SMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQD 154 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~ 154 (541)
|||||+|.+..++-.+ +... ..+..-+|+++++++++...+-||++||+.+-+||+|+|+||+++.|+|+.|+++.
T Consensus 268 IFIDElDAIGtKRfDS-ek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~a 346 (424)
T KOG0652|consen 268 IFIDELDAIGTKRFDS-EKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 346 (424)
T ss_pred EEEechhhhccccccc-cccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHH
Confidence 9999999998776443 2222 34455567788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHH
Q psy7673 155 RKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHF 234 (541)
Q Consensus 155 r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 234 (541)
|.+|++.+.++. .+.+++.+++++ +.|++|++.+.++.|-+|.+.|.++..+. ++.+||
T Consensus 347 RarIlQIHsRKM---nv~~DvNfeELa--RsTddFNGAQcKAVcVEAGMiALRr~ate----------------v~heDf 405 (424)
T KOG0652|consen 347 RARILQIHSRKM---NVSDDVNFEELA--RSTDDFNGAQCKAVCVEAGMIALRRGATE----------------VTHEDF 405 (424)
T ss_pred HHHHHHHhhhhc---CCCCCCCHHHHh--hcccccCchhheeeehhhhHHHHhccccc----------------ccHHHH
Confidence 999999999986 467899999999 99999999999999999999999886544 999999
Q ss_pred HHHHHhcC
Q psy7673 235 DIALKRIK 242 (541)
Q Consensus 235 ~~al~~~~ 242 (541)
.+++..++
T Consensus 406 megI~eVq 413 (424)
T KOG0652|consen 406 MEGILEVQ 413 (424)
T ss_pred HHHHHHHH
Confidence 99987664
No 22
>KOG0730|consensus
Probab=100.00 E-value=1.1e-31 Score=266.16 Aligned_cols=245 Identities=44% Similarity=0.757 Sum_probs=225.8
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcC-Cce
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQ-PCV 77 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~i 77 (541)
+|+.+|.++ |.++|+++|+|||||+|||.+++++|++.+..++.+++.+++.++.+++++.++.+|.++...+ |++
T Consensus 202 ~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psi 281 (693)
T KOG0730|consen 202 LPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSI 281 (693)
T ss_pred hhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCee
Confidence 578888876 8999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHH
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKE 157 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 157 (541)
+||||+|.+++++..... ...++...++..++...+..+++||+++|+++.|+++++| |||++.+++..|+..+|.+
T Consensus 282 i~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~Rld 358 (693)
T KOG0730|consen 282 IFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLD 358 (693)
T ss_pred EeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHH
Confidence 999999999999876433 5788999999999999888899999999999999999999 9999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHH
Q psy7673 158 ILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIA 237 (541)
Q Consensus 158 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~a 237 (541)
|++.++.+.+. .+++++..++ ..+.||++.||..+|..|...++++ ++++|..|
T Consensus 359 Il~~l~k~~~~---~~~~~l~~iA--~~thGyvGaDL~~l~~ea~~~~~r~---------------------~~~~~~~A 412 (693)
T KOG0730|consen 359 ILRVLTKKMNL---LSDVDLEDIA--VSTHGYVGADLAALCREASLQATRR---------------------TLEIFQEA 412 (693)
T ss_pred HHHHHHHhcCC---cchhhHHHHH--HHccchhHHHHHHHHHHHHHHHhhh---------------------hHHHHHHH
Confidence 99999998652 3678899999 8999999999999999999888766 58899999
Q ss_pred HHhcCCCCChhhhhhhHHHhhhhcCccchhhccccCCCCCCcchhhHhhhhhhcccccccccccHHHHHHHHHHhc
Q psy7673 238 LKRIKPSVSKADCKNYESLKQRYTTPGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL 313 (541)
Q Consensus 238 l~~~~~~~s~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l 313 (541)
+..++|+ .+++.+.+.|... |...||+..+.+.|.+.+
T Consensus 413 ~~~i~ps--------------------a~Re~~ve~p~v~------------------W~dIGGlE~lK~elq~~V 450 (693)
T KOG0730|consen 413 LMGIRPS--------------------ALREILVEMPNVS------------------WDDIGGLEELKRELQQAV 450 (693)
T ss_pred HhcCCch--------------------hhhheeccCCCCC------------------hhhccCHHHHHHHHHHHH
Confidence 9999999 7777778888886 999999999999998776
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-31 Score=277.92 Aligned_cols=226 Identities=51% Similarity=0.829 Sum_probs=205.5
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++| +.+++.++||+||||||||++++++|++++.+|+.++.+++.++++|+++++++.+|..++...|+||
T Consensus 260 ~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~ii 339 (494)
T COG0464 260 TPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSII 339 (494)
T ss_pred hHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEE
Confidence 688899987 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
||||+|.+.+.+.... .....++++.++..++++....+++||++||.++.+|++++|+|||+..|.++.|+.++|.+|
T Consensus 340 FiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i 418 (494)
T COG0464 340 FIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEI 418 (494)
T ss_pred EEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHH
Confidence 9999999998886632 223368999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHH
Q psy7673 159 LLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIAL 238 (541)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 238 (541)
++.++..... ....++++..++ +.|+||++.||..+|+.|...+..+.. ...++.+||.+|+
T Consensus 419 ~~~~~~~~~~-~~~~~~~~~~l~--~~t~~~sgadi~~i~~ea~~~~~~~~~---------------~~~~~~~~~~~a~ 480 (494)
T COG0464 419 FKIHLRDKKP-PLAEDVDLEELA--EITEGYSGADIAALVREAALEALREAR---------------RREVTLDDFLDAL 480 (494)
T ss_pred HHHHhcccCC-cchhhhhHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHhc---------------cCCccHHHHHHHH
Confidence 9999996532 245688999999 899999999999999999999998863 1359999999999
Q ss_pred HhcCCCCC
Q psy7673 239 KRIKPSVS 246 (541)
Q Consensus 239 ~~~~~~~s 246 (541)
+..+|+.+
T Consensus 481 ~~~~p~~~ 488 (494)
T COG0464 481 KKIKPSVT 488 (494)
T ss_pred HhcCCCCC
Confidence 99999866
No 24
>KOG0726|consensus
Probab=99.98 E-value=2e-32 Score=244.63 Aligned_cols=219 Identities=38% Similarity=0.667 Sum_probs=196.7
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+-+|+++ |+.||.+++|||+||||||.+++++|+.....|+.+-.++++.+|.|+..+..+++|..+....|+|+
T Consensus 203 LPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIv 282 (440)
T KOG0726|consen 203 LPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 282 (440)
T ss_pred CCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceE
Confidence 799999998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCC--ChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDN--NSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||||.+..++-...+. ....+..-+|+++++++.++..+-||.+||..+.+||+|.||||+++.|+|+.|++..+.
T Consensus 283 FiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~Tkk 362 (440)
T KOG0726|consen 283 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362 (440)
T ss_pred EeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhc
Confidence 999999998887543222 223444557778888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
.|+..+..+. .+.+++.++.+. ..-+.+|+.||+++|.+|...|.++.+.. ++.+||.+
T Consensus 363 kIf~IHTs~M---tl~~dVnle~li--~~kddlSGAdIkAictEaGllAlRerRm~----------------vt~~DF~k 421 (440)
T KOG0726|consen 363 KIFQIHTSRM---TLAEDVNLEELI--MTKDDLSGADIKAICTEAGLLALRERRMK----------------VTMEDFKK 421 (440)
T ss_pred eeEEEeeccc---chhccccHHHHh--hcccccccccHHHHHHHHhHHHHHHHHhh----------------ccHHHHHH
Confidence 9999888765 467889999888 56678999999999999999999887755 99999999
Q ss_pred HHHhc
Q psy7673 237 ALKRI 241 (541)
Q Consensus 237 al~~~ 241 (541)
|.+++
T Consensus 422 a~e~V 426 (440)
T KOG0726|consen 422 AKEKV 426 (440)
T ss_pred HHHHH
Confidence 99876
No 25
>KOG0729|consensus
Probab=99.97 E-value=9.8e-32 Score=237.33 Aligned_cols=220 Identities=40% Similarity=0.677 Sum_probs=198.9
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+++|+.| |+.||.++|+|||||||||.++|++|++.+.-|+.+-.+++..+|+|+....++.+|.-++..+.|||
T Consensus 195 ~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkacii 274 (435)
T KOG0729|consen 195 LPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACII 274 (435)
T ss_pred ccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEE
Confidence 699999987 99999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEcCCccccCCCCCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
|+||+|.+.+.+-.. +......+..-+|+.+++++..++++-|+.+||+|+.+||+|+||||+++.++|..|+.+-|.
T Consensus 275 ffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt 354 (435)
T KOG0729|consen 275 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRT 354 (435)
T ss_pred EeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccc
Confidence 999999998876332 334445666677888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
.|++.+.... ....++.++.++ +.+..-++.+|++.|.+|.+.|+...++. .|+.||.+
T Consensus 355 ~i~kihaksm---sverdir~ella--rlcpnstgaeirsvcteagmfairarrk~----------------atekdfl~ 413 (435)
T KOG0729|consen 355 HIFKIHAKSM---SVERDIRFELLA--RLCPNSTGAEIRSVCTEAGMFAIRARRKV----------------ATEKDFLD 413 (435)
T ss_pred eeEEEecccc---ccccchhHHHHH--hhCCCCcchHHHHHHHHhhHHHHHHHhhh----------------hhHHHHHH
Confidence 9999988764 466788899988 89999999999999999999998776543 89999999
Q ss_pred HHHhcC
Q psy7673 237 ALKRIK 242 (541)
Q Consensus 237 al~~~~ 242 (541)
|.+++.
T Consensus 414 av~kvv 419 (435)
T KOG0729|consen 414 AVNKVV 419 (435)
T ss_pred HHHHHH
Confidence 998763
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=5.4e-31 Score=261.85 Aligned_cols=221 Identities=38% Similarity=0.650 Sum_probs=193.4
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|+++ |..++.++||+||||||||++++++|++++.+++.+.++++...+.++....++.+|..+....|+||
T Consensus 201 lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~IL 280 (438)
T PTZ00361 201 LPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIV 280 (438)
T ss_pred hhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEE
Confidence 578888876 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCC--CChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGD--NNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||+|.+..++..... .....+.+..++..++++....++.||++||.++.+|++++|+|||++.|+|+.|+.++|.
T Consensus 281 fIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~ 360 (438)
T PTZ00361 281 FIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKR 360 (438)
T ss_pred eHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHH
Confidence 99999999877643221 2233455667777888776677899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
+||+.++.+. ...+++++..++ ..++||+++||.++|+.|...|+.+... .|+.+||.+
T Consensus 361 ~Il~~~~~k~---~l~~dvdl~~la--~~t~g~sgAdI~~i~~eA~~~Alr~~r~----------------~Vt~~D~~~ 419 (438)
T PTZ00361 361 RIFEIHTSKM---TLAEDVDLEEFI--MAKDELSGADIKAICTEAGLLALRERRM----------------KVTQADFRK 419 (438)
T ss_pred HHHHHHHhcC---CCCcCcCHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHhcCC----------------ccCHHHHHH
Confidence 9999988764 345778999999 8999999999999999999999877543 399999999
Q ss_pred HHHhcCC
Q psy7673 237 ALKRIKP 243 (541)
Q Consensus 237 al~~~~~ 243 (541)
|++++..
T Consensus 420 A~~~v~~ 426 (438)
T PTZ00361 420 AKEKVLY 426 (438)
T ss_pred HHHHHHh
Confidence 9998743
No 27
>KOG0740|consensus
Probab=99.97 E-value=1.3e-31 Score=258.90 Aligned_cols=253 Identities=39% Similarity=0.615 Sum_probs=220.7
Q ss_pred CCCCCchhhc-C-CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 1 MFPVKYPKLF-G-KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 1 ~~~~~~~~~~-~-~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+||+++|++| | ..+.+++||.||||+|||++++++|.+.+..|+.+.++++.++|.|+.++.++.+|..++..+|+|+
T Consensus 170 i~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvi 249 (428)
T KOG0740|consen 170 ILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVI 249 (428)
T ss_pred hhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEE
Confidence 6899999999 4 6788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC--CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||+|.++..+.. ......+++..+++..++... ...+++||++||.|+.+|++++| ||...++++.|+.+.|.
T Consensus 250 fidEidslls~Rs~-~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~ 326 (428)
T KOG0740|consen 250 FIDEIDSLLSKRSD-NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRS 326 (428)
T ss_pred EechhHHHHhhcCC-cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHH
Confidence 99999999999843 455666777777777766543 34579999999999999999999 99999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
.+++.++..+. ....+.++..++ +.|+||++.||.++|..|.+..++..... .+...+.......++..||++
T Consensus 327 ~~~~~ll~~~~--~~l~~~d~~~l~--~~Tegysgsdi~~l~kea~~~p~r~~~~~---~~~~~~~~~~~r~i~~~df~~ 399 (428)
T KOG0740|consen 327 LLWKQLLKEQP--NGLSDLDISLLA--KVTEGYSGSDITALCKEAAMGPLRELGGT---TDLEFIDADKIRPITYPDFKN 399 (428)
T ss_pred HHHHHHHHhCC--CCccHHHHHHHH--HHhcCcccccHHHHHHHhhcCchhhcccc---hhhhhcchhccCCCCcchHHH
Confidence 99999999862 333456777777 99999999999999999999888776542 122334555667899999999
Q ss_pred HHHhcCCCCChhhhhhhHHHhhhhcCc
Q psy7673 237 ALKRIKPSVSKADCKNYESLKQRYTTP 263 (541)
Q Consensus 237 al~~~~~~~s~~~~~~~e~~~~~~~~~ 263 (541)
+++.++++.+......|++|...|+.-
T Consensus 400 a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 400 AFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred HHHhhccccCccccchhHHHhhhhccc
Confidence 999999999999999999999988763
No 28
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.97 E-value=5.6e-30 Score=265.32 Aligned_cols=236 Identities=23% Similarity=0.352 Sum_probs=203.4
Q ss_pred ccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhh
Q psy7673 294 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNL 373 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~ 373 (541)
.+++++|||++|+++|++.+.. ++|+++++|++|++++++|.|++.+|+.+.||+||+|+|++++.+|+.+ +.+...
T Consensus 217 ~~~~~~gG~~~l~~~l~~~l~~-~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~--~~l~~~ 293 (463)
T PRK12416 217 KFVSFKGGLSTIIDRLEEVLTE-TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQS--NELNEQ 293 (463)
T ss_pred ceEeeCCCHHHHHHHHHHhccc-ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhcCC--cchhHH
Confidence 3578999999999999999954 4799999999999998899998888878899999999999999999853 556677
Q ss_pred hcCCCCccEEEEEEeeCCC--CCCCCccEEEecCCCCCCceEEEeecccccC---CCcEEEEEEec--CccCCcccCCCC
Q psy7673 374 LSSIEHVNVAVINLAYENI--PMKQNAFGFLVPPREKLPILGVVFDSCCFEQ---ADWTILTVMMG--GAWYDTYFKGQS 446 (541)
Q Consensus 374 l~~~~~~~~~~v~l~~~~~--~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~---~~~~~l~~~~~--g~~~~~~~~~~~ 446 (541)
+.++.|.++.+++++|++. .++..++|++++..++..+.++.|.|++|+. .+..+++++++ |..++++.. ++
T Consensus 294 ~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~ 372 (463)
T PRK12416 294 FHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKN-YS 372 (463)
T ss_pred HhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhc-CC
Confidence 8899999999999999864 3456789999998777667888899988864 34455565664 345555555 89
Q ss_pred HHHHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHH
Q psy7673 447 KEYILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKK 526 (541)
Q Consensus 447 ~e~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~ 526 (541)
++++.+.++++|+++||+..+|..+.+++|++++|+|.+||..++..+++.+..+.++|++||+|+.|.+|++||.||++
T Consensus 373 dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i~~ai~sg~~ 452 (463)
T PRK12416 373 EEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKN 452 (463)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccHHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999998887776666799999999999999999999999
Q ss_pred HHHHHhh
Q psy7673 527 AVESIKW 533 (541)
Q Consensus 527 aa~~i~~ 533 (541)
+|++|+.
T Consensus 453 aA~~i~~ 459 (463)
T PRK12416 453 TANEIIA 459 (463)
T ss_pred HHHHHHH
Confidence 9999953
No 29
>PLN02576 protoporphyrinogen oxidase
Probab=99.97 E-value=2.1e-29 Score=263.49 Aligned_cols=240 Identities=23% Similarity=0.360 Sum_probs=205.5
Q ss_pred cccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCc-EEEEec--Cc-eeEeeCEEEEcCChhHHHhhhcccCc
Q psy7673 293 WSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKG-VKVTLN--ND-QHIEANHVVSALPAPKLGMLLHKQHP 368 (541)
Q Consensus 293 ~~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~-~~v~~~--~g-~~~~ad~VI~t~P~~~~~~ll~~~~~ 368 (541)
..++++++||++|+++|++.++.+ +|++|++|++|++.+++ |.|++. +| +++.||+||+|+|++++..++++.++
T Consensus 229 ~~~~~~~gG~~~L~~~la~~l~~~-~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~~ 307 (496)
T PLN02576 229 QTVGSFRGGLQTLPDALAKRLGKD-KVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKSP 307 (496)
T ss_pred CeeEeccchHHHHHHHHHHhhCcC-cEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccCH
Confidence 346889999999999999998433 79999999999998776 776543 45 36899999999999999999988777
Q ss_pred hhHhhhcCCCCccEEEEEEeeCCCCCC--------CCccEEEecCCCCCCceEEEeecccccC---CCcEEEEEEecCcc
Q psy7673 369 TLGNLLSSIEHVNVAVINLAYENIPMK--------QNAFGFLVPPREKLPILGVVFDSCCFEQ---ADWTILTVMMGGAW 437 (541)
Q Consensus 369 ~~~~~l~~~~~~~~~~v~l~~~~~~~~--------~~~~g~l~~~~~~~~~~~~~~~s~~~~~---~~~~~l~~~~~g~~ 437 (541)
...+++.++.|.++++|++.|++++|. ..+||++++..++.+.++++|+++.++. .+..++++|++|..
T Consensus 308 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~ 387 (496)
T PLN02576 308 AAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSR 387 (496)
T ss_pred HHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCC
Confidence 888899999999999999999875543 2578899887777778899999988864 35678889998887
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhHcCCCC--CCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhC-CCCEEEEcCCCCC
Q psy7673 438 YDTYFKGQSKEYILDIACRYVHEILDMPR--TPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTH-QLPLYLTGSSYDG 514 (541)
Q Consensus 438 ~~~~~~~~~~e~~~~~~~~~l~~~~g~~~--~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~-~~~l~laG~~~~g 514 (541)
++++.. ++++++++.++++|++++|... .|....+++|++|+|+|.+||...++.+++.+... .++|++||||+.|
T Consensus 388 ~~~~~~-~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g 466 (496)
T PLN02576 388 NTGIAS-ASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGG 466 (496)
T ss_pred Cccccc-CCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCC
Confidence 777766 8999999999999999999754 67888899999999999999999998888777643 2699999999999
Q ss_pred CChHHHHHHHHHHHHHHhhh
Q psy7673 515 VGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 515 ~~v~~ai~sg~~aa~~i~~~ 534 (541)
.++++||+||.++|++|+..
T Consensus 467 ~~i~~ai~sg~~aA~~i~~~ 486 (496)
T PLN02576 467 VALGKCVESGYEAADLVISY 486 (496)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999543
No 30
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.97 E-value=2.8e-29 Score=248.31 Aligned_cols=233 Identities=23% Similarity=0.376 Sum_probs=208.0
Q ss_pred ccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhh
Q psy7673 294 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNL 373 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~ 373 (541)
.++++.||+++|+++|++.+.. +|+++++|++|..+..++.+.+.+|..+.||.||+|+|++.+.+++++ .....+
T Consensus 206 ~~~~~~gG~~~l~~al~~~l~~--~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~--~~~~~~ 281 (444)
T COG1232 206 KFGYLRGGLQSLIEALAEKLEA--KIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD--EAVSKA 281 (444)
T ss_pred cccccCccHHHHHHHHHHHhhh--ceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC--cchhhh
Confidence 4688999999999999999954 499999999999998788888888888999999999999999999987 556778
Q ss_pred hcCCCCccEEEEEEeeCCC--CCCCCccEEEecCCCCCCceEEEeecccccCC---CcEEEEEEecCccCCcccCCCCHH
Q psy7673 374 LSSIEHVNVAVINLAYENI--PMKQNAFGFLVPPREKLPILGVVFDSCCFEQA---DWTILTVMMGGAWYDTYFKGQSKE 448 (541)
Q Consensus 374 l~~~~~~~~~~v~l~~~~~--~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~---~~~~l~~~~~g~~~~~~~~~~~~e 448 (541)
+.++.+.++.+|.++++.. ...++++|++++.+... +.+++|+|.+||.. +.+++++++++.+...... ++||
T Consensus 282 ~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~-~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~-~~de 359 (444)
T COG1232 282 AKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPY-ILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVST-MSDE 359 (444)
T ss_pred hhhccccceEEEEEEeccccccCCCCceEEEEecCCCc-ceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhc-cCHH
Confidence 8999999999999999765 55668899999887765 99999999999863 5789999997765555444 7899
Q ss_pred HHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHHH
Q psy7673 449 YILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAV 528 (541)
Q Consensus 449 ~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~aa 528 (541)
|+++.++++|.+++++..+|.++.+.||++++|||++||.+++..++..+.+..++|+++|.|+.|.|+++||.+|..+|
T Consensus 360 e~~~~~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa 439 (444)
T COG1232 360 ELVAAVLDDLKKLGGINGDPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAA 439 (444)
T ss_pred HHHHHHHHHHHHHcCcCcchhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888855589999999999999999999999999
Q ss_pred HHHh
Q psy7673 529 ESIK 532 (541)
Q Consensus 529 ~~i~ 532 (541)
++|+
T Consensus 440 ~~l~ 443 (444)
T COG1232 440 EQLL 443 (444)
T ss_pred HHhh
Confidence 9884
No 31
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-30 Score=260.30 Aligned_cols=218 Identities=48% Similarity=0.826 Sum_probs=199.4
Q ss_pred CCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEE
Q psy7673 4 VKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 4 ~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
+.+|..| |...|+++|++||||||||.++|++|.+.+++++.++.+++...+++-....++.+|.+++++.|||+||
T Consensus 169 Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFI 248 (596)
T COG0465 169 LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFI 248 (596)
T ss_pred HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEE
Confidence 5567766 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 81 DEIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 81 De~d~l~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
||+|.+...+... +.+...++.++.|+..+|++..+.+++|+++||+++-+|++|+|||||++.|.++.|+...|++|
T Consensus 249 DEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~I 328 (596)
T COG0465 249 DEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQI 328 (596)
T ss_pred ehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHH
Confidence 9999999887543 23445568999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHH
Q psy7673 159 LLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIAL 238 (541)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 238 (541)
++.++.+. .+.+++++..+| +.|.||++.|+.+++++|...|.++.... |++.||++|.
T Consensus 329 lkvH~~~~---~l~~~Vdl~~iA--r~tpGfsGAdL~nl~NEAal~aar~n~~~----------------i~~~~i~ea~ 387 (596)
T COG0465 329 LKVHAKNK---PLAEDVDLKKIA--RGTPGFSGADLANLLNEAALLAARRNKKE----------------ITMRDIEEAI 387 (596)
T ss_pred HHHHhhcC---CCCCcCCHHHHh--hhCCCcccchHhhhHHHHHHHHHHhcCee----------------EeccchHHHH
Confidence 99888764 456889999988 99999999999999999999999886654 9999999999
Q ss_pred HhcC
Q psy7673 239 KRIK 242 (541)
Q Consensus 239 ~~~~ 242 (541)
+++-
T Consensus 388 drv~ 391 (596)
T COG0465 388 DRVI 391 (596)
T ss_pred HHHh
Confidence 9763
No 32
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=7.4e-30 Score=263.93 Aligned_cols=218 Identities=47% Similarity=0.807 Sum_probs=189.9
Q ss_pred Cchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEc
Q psy7673 5 KYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFD 81 (541)
Q Consensus 5 ~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 81 (541)
.+|+.+ |..+++++||+||||||||++++++|++++.+++.++++++...+.+.....++.+|..++...|+|||||
T Consensus 75 ~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iD 154 (495)
T TIGR01241 75 KNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFID 154 (495)
T ss_pred HCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEe
Confidence 445554 78899999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred CCccccCCCCCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHH
Q psy7673 82 EIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEIL 159 (541)
Q Consensus 82 e~d~l~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il 159 (541)
|+|.+..+++.. .......+.++.|+..++.+....+++||++||.++.+|++++|++||++.|+++.|+.++|.+|+
T Consensus 155 Eid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il 234 (495)
T TIGR01241 155 EIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEIL 234 (495)
T ss_pred chhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHH
Confidence 999999876542 122344678889999999888888899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHH
Q psy7673 160 LALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALK 239 (541)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 239 (541)
+.++.... ...++++..++ ..+.||+++||.++|++|...+.++.. ..|+.+||.+|++
T Consensus 235 ~~~l~~~~---~~~~~~l~~la--~~t~G~sgadl~~l~~eA~~~a~~~~~----------------~~i~~~~l~~a~~ 293 (495)
T TIGR01241 235 KVHAKNKK---LAPDVDLKAVA--RRTPGFSGADLANLLNEAALLAARKNK----------------TEITMNDIEEAID 293 (495)
T ss_pred HHHHhcCC---CCcchhHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcCC----------------CCCCHHHHHHHHH
Confidence 99998642 33567888888 899999999999999999877765422 2499999999999
Q ss_pred hcCC
Q psy7673 240 RIKP 243 (541)
Q Consensus 240 ~~~~ 243 (541)
....
T Consensus 294 ~~~~ 297 (495)
T TIGR01241 294 RVIA 297 (495)
T ss_pred HHhc
Confidence 7754
No 33
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=1.5e-29 Score=276.29 Aligned_cols=210 Identities=20% Similarity=0.284 Sum_probs=173.1
Q ss_pred hhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccc----------cC--------------------
Q psy7673 8 KLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMY----------LG-------------------- 57 (541)
Q Consensus 8 ~~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~----------~~-------------------- 57 (541)
..+|.++|+||||+||||||||++|+++|.+.+++++.|+++++...+ .+
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~ 1702 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELL 1702 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhh
Confidence 345899999999999999999999999999999999999999987543 01
Q ss_pred -----------ch--HHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---CCCCeEE
Q psy7673 58 -----------ES--ERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---GRGGVFL 121 (541)
Q Consensus 58 -----------~~--~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~v 121 (541)
.. ...++.+|+.|+.++||||+|||||.+..+.. ....+..|+..+++.. ...+++|
T Consensus 1703 e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIV 1775 (2281)
T CHL00206 1703 TMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILV 1775 (2281)
T ss_pred hhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEE
Confidence 11 22378899999999999999999999986521 1123677888888653 3457999
Q ss_pred EEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHH
Q psy7673 122 MAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEA 201 (541)
Q Consensus 122 i~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a 201 (541)
||+||.|+.|||+|+|||||++.|.++.|+..+|.+++..++...+.......++++.+| +.|.||+++||.++|++|
T Consensus 1776 IAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA--~~T~GfSGADLanLvNEA 1853 (2281)
T CHL00206 1776 IASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFG--SITMGSNARDLVALTNEA 1853 (2281)
T ss_pred EEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHH--HhCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998765433222223346788888 999999999999999999
Q ss_pred HHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 202 REQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
+..|+.+..+ .|+.++++.|+....
T Consensus 1854 aliAirq~ks----------------~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1854 LSISITQKKS----------------IIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHHHcCCC----------------ccCHHHHHHHHHHHH
Confidence 9999987543 389999999988553
No 34
>KOG0651|consensus
Probab=99.97 E-value=2e-30 Score=234.19 Aligned_cols=221 Identities=42% Similarity=0.683 Sum_probs=192.0
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++| |+.+|.+++||||||+|||.++++++..++++++.+..+.+.+++.|+....++..|..++...||+|
T Consensus 150 lpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pcii 229 (388)
T KOG0651|consen 150 LPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCII 229 (388)
T ss_pred eeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEE
Confidence 799999998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
|+||||.+.+.+-+. ..+....+.+.+|++.++++....++.+|+|+|+|+.|+|+|+|+||+++.++++.|++..|.
T Consensus 230 fmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~ 309 (388)
T KOG0651|consen 230 FMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARL 309 (388)
T ss_pred eehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhce
Confidence 999999998887332 122233455566666677777777899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
.|++...+... ....++++.+. +.++||++.|+++.|.+|-..++.+.... +..|||..
T Consensus 310 ~I~Kih~~~i~---~~Geid~eaiv--K~~d~f~gad~rn~~tEag~Fa~~~~~~~----------------vl~Ed~~k 368 (388)
T KOG0651|consen 310 GILKIHVQPID---FHGEIDDEAIL--KLVDGFNGADLRNVCTEAGMFAIPEERDE----------------VLHEDFMK 368 (388)
T ss_pred eeEeecccccc---ccccccHHHHH--HHHhccChHHHhhhcccccccccchhhHH----------------HhHHHHHH
Confidence 99887766532 33567788888 89999999999999999998888776544 78999999
Q ss_pred HHHhcCC
Q psy7673 237 ALKRIKP 243 (541)
Q Consensus 237 al~~~~~ 243 (541)
+..+...
T Consensus 369 ~vrk~~~ 375 (388)
T KOG0651|consen 369 LVRKQAD 375 (388)
T ss_pred HHHHHHH
Confidence 9887643
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=6e-29 Score=247.74 Aligned_cols=219 Identities=50% Similarity=0.798 Sum_probs=188.4
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|+++ |..+++++||+||||||||+++++++++++.+++.+.+.++...+.++....++.+|..+....|+||
T Consensus 140 ~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il 219 (364)
T TIGR01242 140 LPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSII 219 (364)
T ss_pred HHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 477888876 78899999999999999999999999999999999999998888889988899999999998899999
Q ss_pred EEcCCccccCCCCCCCC--CChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGD--NNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||+|.+...+..... .....+.+..++..++.+....++.||+|||.++.+|+++++++||++.|+++.|+.++|.
T Consensus 220 ~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~ 299 (364)
T TIGR01242 220 FIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRL 299 (364)
T ss_pred EhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHH
Confidence 99999999876543221 1223455666777777766667899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
+|++.++... ....++++..++ ..+.||+++||.++|+.|...|+.+... .|+.+||.+
T Consensus 300 ~Il~~~~~~~---~l~~~~~~~~la--~~t~g~sg~dl~~l~~~A~~~a~~~~~~----------------~i~~~d~~~ 358 (364)
T TIGR01242 300 EILKIHTRKM---KLAEDVDLEAIA--KMTEGASGADLKAICTEAGMFAIREERD----------------YVTMDDFIK 358 (364)
T ss_pred HHHHHHHhcC---CCCccCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCCC----------------ccCHHHHHH
Confidence 9999988764 244567899999 8999999999999999999999876433 499999999
Q ss_pred HHHhc
Q psy7673 237 ALKRI 241 (541)
Q Consensus 237 al~~~ 241 (541)
|++.+
T Consensus 359 a~~~~ 363 (364)
T TIGR01242 359 AVEKV 363 (364)
T ss_pred HHHHh
Confidence 99865
No 36
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=3.9e-29 Score=260.43 Aligned_cols=216 Identities=46% Similarity=0.785 Sum_probs=187.6
Q ss_pred Cchhh---cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEc
Q psy7673 5 KYPKL---FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFD 81 (541)
Q Consensus 5 ~~~~~---~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 81 (541)
.+|+. +|...++++||+||||||||++++++|.+.+.+++.++|+++...+.+.....++.+|..+....|+|||||
T Consensus 203 k~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfID 282 (638)
T CHL00176 203 KKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFID 282 (638)
T ss_pred hCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEe
Confidence 34554 378889999999999999999999999999999999999999888888888889999999999999999999
Q ss_pred CCccccCCCCCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHH
Q psy7673 82 EIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEIL 159 (541)
Q Consensus 82 e~d~l~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il 159 (541)
|+|.+...+... +.+....+.++.|+..++++..+.+++||++||.++.+|++++|+|||++.|.++.|+.++|.+||
T Consensus 283 EID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL 362 (638)
T CHL00176 283 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDIL 362 (638)
T ss_pred cchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHH
Confidence 999998765432 223345678888999999887788899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHH
Q psy7673 160 LALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALK 239 (541)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 239 (541)
+.++... ....++++..++ ..+.||+++||.+++++|...+.++.. ..|+.+||.+|+.
T Consensus 363 ~~~l~~~---~~~~d~~l~~lA--~~t~G~sgaDL~~lvneAal~a~r~~~----------------~~It~~dl~~Ai~ 421 (638)
T CHL00176 363 KVHARNK---KLSPDVSLELIA--RRTPGFSGADLANLLNEAAILTARRKK----------------ATITMKEIDTAID 421 (638)
T ss_pred HHHHhhc---ccchhHHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHhCC----------------CCcCHHHHHHHHH
Confidence 9999873 345577788888 899999999999999999888765533 2499999999998
Q ss_pred hc
Q psy7673 240 RI 241 (541)
Q Consensus 240 ~~ 241 (541)
.+
T Consensus 422 rv 423 (638)
T CHL00176 422 RV 423 (638)
T ss_pred HH
Confidence 76
No 37
>KOG0741|consensus
Probab=99.96 E-value=6.9e-30 Score=245.58 Aligned_cols=241 Identities=38% Similarity=0.603 Sum_probs=206.8
Q ss_pred CCCCchhhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC-CcEEEEeCccccccccCchHHHHHHHHHHHHh--------
Q psy7673 2 FPVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAG-INFISVKGPELLNMYLGESERAVRQCFQRARN-------- 72 (541)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~-~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 72 (541)
||=..-+.||..+-+|+|||||||||||.+||.+...++ .+...+|..++.++|+|+++.+++.+|..|..
T Consensus 243 Fpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~ 322 (744)
T KOG0741|consen 243 FPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGAN 322 (744)
T ss_pred CCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCcc
Confidence 343344567999999999999999999999999999995 56888999999999999999999999998853
Q ss_pred cCCceEEEcCCccccCCCCCCCCCC-hhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCC
Q psy7673 73 SQPCVIFFDEIDALCPKRSSLGDNN-SSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPN 151 (541)
Q Consensus 73 ~~~~il~iDe~d~l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~ 151 (541)
+.-.||++||+|.++..+.+..... ....+.+.|+..+|+...-.++.||+-||+++.+|++|+|||||...+++..|+
T Consensus 323 SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPD 402 (744)
T KOG0741|consen 323 SGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPD 402 (744)
T ss_pred CCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCC
Confidence 2236999999999999987765533 447789999999998877778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccC
Q psy7673 152 EQDRKEILLALTKQGK-DPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIG 230 (541)
Q Consensus 152 ~~~r~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~ 230 (541)
+.-|.+|++.+..+.. ...+..++|+.++| ..|-.||+.+|..+++.|...|..|..+.- ..........+...|+
T Consensus 403 E~gRlQIl~IHT~rMre~~~l~~dVdl~elA--~lTKNfSGAEleglVksA~S~A~nR~vk~~-~~~~~~~~~~e~lkV~ 479 (744)
T KOG0741|consen 403 EKGRLQILKIHTKRMRENNKLSADVDLKELA--ALTKNFSGAELEGLVKSAQSFAMNRHVKAG-GKVEVDPVAIENLKVT 479 (744)
T ss_pred ccCceEEEEhhhhhhhhcCCCCCCcCHHHHH--HHhcCCchhHHHHHHHHHHHHHHHhhhccC-cceecCchhhhheeec
Confidence 9999999988766532 34678899999999 999999999999999999999999987653 2234444555677899
Q ss_pred HHHHHHHHHhcCCCC
Q psy7673 231 FRHFDIALKRIKPSV 245 (541)
Q Consensus 231 ~~d~~~al~~~~~~~ 245 (541)
.+||..||+.++|.+
T Consensus 480 r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 480 RGDFLNALEDVKPAF 494 (744)
T ss_pred HHHHHHHHHhcCccc
Confidence 999999999999963
No 38
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=1.6e-28 Score=247.27 Aligned_cols=228 Identities=37% Similarity=0.631 Sum_probs=182.6
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc----------EEEEeCccccccccCchHHHHHHHHH
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN----------FISVKGPELLNMYLGESERAVRQCFQ 68 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~----------~~~i~~~~l~~~~~~~~~~~~~~~~~ 68 (541)
+|+.+|++| |.++++++|||||||||||++++++|++++.+ ++.+...++.+++.++.+..++.+|.
T Consensus 200 lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~ 279 (512)
T TIGR03689 200 LPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQ 279 (512)
T ss_pred HHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHH
Confidence 578899887 78999999999999999999999999998544 44556678888899999999999999
Q ss_pred HHHhc----CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeE
Q psy7673 69 RARNS----QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRI 144 (541)
Q Consensus 69 ~~~~~----~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~ 144 (541)
.+... .|+||||||+|.++.++...........+++.|+..++++....+++||++||.++.||++++|||||+..
T Consensus 280 ~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~ 359 (512)
T TIGR03689 280 RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVK 359 (512)
T ss_pred HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceE
Confidence 88753 68999999999999887654444455778899999999988778899999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCC-------CCCCCCHHHHHhh---------------------------hhcCCCC
Q psy7673 145 LFVNLPNEQDRKEILLALTKQGKDPM-------MGEDVDFDKIAAD---------------------------ERCEGFS 190 (541)
Q Consensus 145 i~~~~p~~~~r~~il~~~~~~~~~~~-------~~~~~~~~~l~~~---------------------------~~~~g~~ 190 (541)
|+|+.|+.++|.+|++.++....... -....+...+... ..++.+|
T Consensus 360 I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~s 439 (512)
T TIGR03689 360 IRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVS 439 (512)
T ss_pred EEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeeccccc
Confidence 99999999999999999987532110 0000111111100 1255689
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 191 GADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 191 ~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
+..|.++|++|...|+++.... ....|+.+|+..|+...
T Consensus 440 Ga~i~~iv~~a~~~ai~~~~~~------------~~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 440 GAMIANIVDRAKKRAIKDHITG------------GQVGLRIEHLLAAVLDE 478 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------------CCcCcCHHHHHHHHHHh
Confidence 9999999999999999987643 11359999999998754
No 39
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=1.8e-27 Score=223.98 Aligned_cols=172 Identities=20% Similarity=0.310 Sum_probs=144.0
Q ss_pred hhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHh-----cCCceEEEcC
Q psy7673 8 KLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARN-----SQPCVIFFDE 82 (541)
Q Consensus 8 ~~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~il~iDe 82 (541)
.++|.++|++++||||||||||++++++|++++.+++.++..++.+++.|+.++.++.+|..|.. .+||||||||
T Consensus 141 ~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 141 ALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred hccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 34589999999999999999999999999999999999999999999999999999999999875 4699999999
Q ss_pred CccccCCCCCCCCCChhHHHH-HHHHHHhcCC------------CCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecC
Q psy7673 83 IDALCPKRSSLGDNNSSMRIV-NQLLTEMDGF------------EGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNL 149 (541)
Q Consensus 83 ~d~l~~~~~~~~~~~~~~~~~-~~l~~~l~~~------------~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~ 149 (541)
||.+++.+.. .+.....+++ ..|+..+|+. ....+++||+|||+++.||++|+|+|||++.+ ..
T Consensus 221 IDA~~g~r~~-~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~l 297 (413)
T PLN00020 221 LDAGAGRFGT-TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WA 297 (413)
T ss_pred hhhcCCCCCC-CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CC
Confidence 9999998764 3344445555 7888887752 23456999999999999999999999999865 48
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCC
Q psy7673 150 PNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEG 188 (541)
Q Consensus 150 p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 188 (541)
|+.++|.+||+.+++..+ + +..++..++ ..+.|
T Consensus 298 Pd~e~R~eIL~~~~r~~~---l-~~~dv~~Lv--~~f~g 330 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDG---V-SREDVVKLV--DTFPG 330 (413)
T ss_pred CCHHHHHHHHHHHhccCC---C-CHHHHHHHH--HcCCC
Confidence 999999999999998742 1 235555555 55544
No 40
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.96 E-value=9.9e-27 Score=241.14 Aligned_cols=234 Identities=26% Similarity=0.414 Sum_probs=196.6
Q ss_pred cccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhhh
Q psy7673 295 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNLL 374 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l 374 (541)
.+++++||++++++|++.+... +|+++++|++|..++++|.|.+.+|+++.||+||+|+|++++.+++.+ +...+++
T Consensus 213 ~~~~~~G~~~l~~~l~~~l~~~-~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~--~~~~~~~ 289 (451)
T PRK11883 213 FGTLKGGLQSLIEALEEKLPAG-TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVA--PPAFALF 289 (451)
T ss_pred eEeeccHHHHHHHHHHHhCcCC-eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhccC--hhHHHHH
Confidence 4689999999999999999544 799999999999988889998888888999999999999999999753 4567888
Q ss_pred cCCCCccEEEEEEeeCCC-CCCCCccEEEecCCCCCCceEEEeecccccCC---CcEEEEEEecCccCCcccCCCCHHHH
Q psy7673 375 SSIEHVNVAVINLAYENI-PMKQNAFGFLVPPREKLPILGVVFDSCCFEQA---DWTILTVMMGGAWYDTYFKGQSKEYI 450 (541)
Q Consensus 375 ~~~~~~~~~~v~l~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~---~~~~l~~~~~g~~~~~~~~~~~~e~~ 450 (541)
+++.|.++.++++.|+++ ++...+++++++.+++.++.+++|++.+++.. +..++++ +.|.+.......++++++
T Consensus 290 ~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~-~~~~~~~~~~~~~~~~~~ 368 (451)
T PRK11883 290 KTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRL-YVGRPGDEAVVDATDEEL 368 (451)
T ss_pred hCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEE-ecCCCCCchhccCCHHHH
Confidence 999999999999999876 34456678888766666788888988876542 3444444 445565543334789999
Q ss_pred HHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHHHHH
Q psy7673 451 LDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAVES 530 (541)
Q Consensus 451 ~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~aa~~ 530 (541)
++.++++|++++|...+|....+++|++++|+|.+|+....+.++..+.. .++||+||+|+.|.++++|++||+++|++
T Consensus 369 ~~~~~~~L~~~~g~~~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~g~~i~~av~sg~~~a~~ 447 (451)
T PRK11883 369 VAFVLADLSKVMGITGDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFEGVGLPDCIAQAKRAAAR 447 (451)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccCCccHHHHHHHHHHHHHH
Confidence 99999999999998778889999999999999999998878777766664 56999999999999999999999999999
Q ss_pred Hhh
Q psy7673 531 IKW 533 (541)
Q Consensus 531 i~~ 533 (541)
|+.
T Consensus 448 i~~ 450 (451)
T PRK11883 448 LLA 450 (451)
T ss_pred HHh
Confidence 854
No 41
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=4.1e-27 Score=254.58 Aligned_cols=237 Identities=49% Similarity=0.820 Sum_probs=201.4
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|+++ |..++.++||+||||||||++++++|++++.+++.+++.++.+.+.++....++.+|..+....|+||
T Consensus 196 ~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il 275 (733)
T TIGR01243 196 LPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSII 275 (733)
T ss_pred HHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEE
Confidence 477888876 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
||||+|.+.++++.. ......++++.|+..++.+.....++||++||.++.+|+++++++||+..+.++.|+.++|.+|
T Consensus 276 ~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~I 354 (733)
T TIGR01243 276 FIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEI 354 (733)
T ss_pred EeehhhhhcccccCC-cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHH
Confidence 999999999876542 2344567888999999988777889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCC---CcCCCCCccccccCHHHHH
Q psy7673 159 LLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVEND---DQAGIDDTEQVTIGFRHFD 235 (541)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~---~~~~~~~~~~~~i~~~d~~ 235 (541)
++...... .+.+++++..++ ..+.||++.|+..+++.|...++++.......+ ............++.+||.
T Consensus 355 l~~~~~~~---~l~~d~~l~~la--~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~ 429 (733)
T TIGR01243 355 LKVHTRNM---PLAEDVDLDKLA--EVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFM 429 (733)
T ss_pred HHHHhcCC---CCccccCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHH
Confidence 99877753 345677888888 899999999999999999999988875421110 0011112234568999999
Q ss_pred HHHHhcCCC
Q psy7673 236 IALKRIKPS 244 (541)
Q Consensus 236 ~al~~~~~~ 244 (541)
+|++..+|+
T Consensus 430 ~Al~~v~ps 438 (733)
T TIGR01243 430 EALKMVEPS 438 (733)
T ss_pred HHHhhcccc
Confidence 999999887
No 42
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=1.5e-27 Score=252.08 Aligned_cols=214 Identities=43% Similarity=0.755 Sum_probs=189.2
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCC
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPK 89 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~ 89 (541)
++...+++++|+||||||||+++++++.+++.+++.++++++...+.+.....++.+|..+....|+||||||+|.+...
T Consensus 180 ~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~ 259 (644)
T PRK10733 180 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 259 (644)
T ss_pred cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhc
Confidence 36678899999999999999999999999999999999999988888888899999999999999999999999999877
Q ss_pred CCCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCC
Q psy7673 90 RSSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGK 167 (541)
Q Consensus 90 ~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~ 167 (541)
+... +......+.++.|+..++++..+.+++||++||.++.+|++++|++||++.|.++.|+.++|.+|++.++.+.
T Consensus 260 r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~- 338 (644)
T PRK10733 260 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV- 338 (644)
T ss_pred cCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC-
Confidence 6542 2233456788999999999888888999999999999999999999999999999999999999999999874
Q ss_pred CCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCCC
Q psy7673 168 DPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKPS 244 (541)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 244 (541)
.+..++++..++ +.|.||+++||.++|++|...|.++.. ..|+.+||++|+..+.+.
T Consensus 339 --~l~~~~d~~~la--~~t~G~sgadl~~l~~eAa~~a~r~~~----------------~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 339 --PLAPDIDAAIIA--RGTPGFSGADLANLVNEAALFAARGNK----------------RVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred --CCCCcCCHHHHH--hhCCCCCHHHHHHHHHHHHHHHHHcCC----------------CcccHHHHHHHHHHHhcc
Confidence 345678888888 899999999999999999998876532 249999999999877554
No 43
>KOG0732|consensus
Probab=99.95 E-value=2.1e-27 Score=249.57 Aligned_cols=240 Identities=42% Similarity=0.685 Sum_probs=203.5
Q ss_pred CCCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHHHHHHHHHHHHh
Q psy7673 1 MFPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRARN 72 (541)
Q Consensus 1 ~~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 72 (541)
|+|+.+|+.| ++.||+++|++||||||||..++++|..+ ...++.-+..+..++++|+.+..++.+|.+++.
T Consensus 282 l~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k 361 (1080)
T KOG0732|consen 282 LLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQK 361 (1080)
T ss_pred HhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhc
Confidence 5899999998 69999999999999999999999999888 355666677888999999999999999999999
Q ss_pred cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCH
Q psy7673 73 SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNE 152 (541)
Q Consensus 73 ~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~ 152 (541)
+.|+|+|+||||-|++.+... +......+...|+..++++..++.++||++||+++.++++++|||||+++++|+.|+.
T Consensus 362 ~qPSIIffdeIdGlapvrSsk-qEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~ 440 (1080)
T KOG0732|consen 362 TQPSIIFFDEIDGLAPVRSSK-QEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDV 440 (1080)
T ss_pred cCceEEeccccccccccccch-HHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCch
Confidence 999999999999999987553 3334467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCC-CcCCCCCccccccCH
Q psy7673 153 QDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVEND-DQAGIDDTEQVTIGF 231 (541)
Q Consensus 153 ~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~-~~~~~~~~~~~~i~~ 231 (541)
+.|..|+...-++...+ ...-....++ +.+.||.+.||+.||..|...++.+....+... +...++... ..+..
T Consensus 441 ~ar~~Il~Ihtrkw~~~--i~~~l~~~la--~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~-ikV~~ 515 (1080)
T KOG0732|consen 441 DARAKILDIHTRKWEPP--ISRELLLWLA--EETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVAL-IKVEV 515 (1080)
T ss_pred HHHHHHHHHhccCCCCC--CCHHHHHHHH--HhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchh-hhhhh
Confidence 99999999998876522 2222355566 899999999999999999999998866554433 333333333 34999
Q ss_pred HHHHHHHHhcCCCCC
Q psy7673 232 RHFDIALKRIKPSVS 246 (541)
Q Consensus 232 ~d~~~al~~~~~~~s 246 (541)
+||..|+.+..|+..
T Consensus 516 ~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 516 RDFVEAMSRITPSSR 530 (1080)
T ss_pred HhhhhhhhccCCCCC
Confidence 999999998877544
No 44
>KOG0736|consensus
Probab=99.93 E-value=1.2e-24 Score=218.52 Aligned_cols=264 Identities=27% Similarity=0.394 Sum_probs=215.5
Q ss_pred CCCCchhhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEc
Q psy7673 2 FPVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFD 81 (541)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 81 (541)
.|.+.|...+......+||+|+||||||++++++|++++.|+++++|.++........+.++..+|..++.++|+||||-
T Consensus 418 ~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~ 497 (953)
T KOG0736|consen 418 SPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLR 497 (953)
T ss_pred CcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEe
Confidence 35666777777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHHHHhc--CC-CCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 82 EIDALCPKRSSLGDNNSSMRIVNQLLTEMD--GF-EGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 82 e~d~l~~~~~~~~~~~~~~~~~~~l~~~l~--~~-~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
++|.+..+.++ ....+++..+-..+. .. .+..+++||++++..+.+++.+++ .|.++|.++.|+++||.+|
T Consensus 498 ~~dvl~id~dg----ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~i 571 (953)
T KOG0736|consen 498 NLDVLGIDQDG----GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEI 571 (953)
T ss_pred ccceeeecCCC----chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHH
Confidence 99999855433 333344444333333 22 345679999999999999999999 8889999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhccc----CCCcCCCCCccccccCHHHH
Q psy7673 159 LLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVE----NDDQAGIDDTEQVTIGFRHF 234 (541)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~----~~~~~~~~~~~~~~i~~~d~ 234 (541)
|++++... ....++....++ ++|.||+.+++..++.++...+..++.+... +....++.......+++|||
T Consensus 572 Lq~y~~~~---~~n~~v~~k~~a--~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf 646 (953)
T KOG0736|consen 572 LQWYLNHL---PLNQDVNLKQLA--RKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDF 646 (953)
T ss_pred HHHHHhcc---ccchHHHHHHHH--HhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHH
Confidence 99999875 466778888888 8999999999999999996666666655431 11222333445678999999
Q ss_pred HHHHHhcCCCCChhhhhhhHHHhhhhcCccchhhccccCCCCCCcchhhHhhhhhhcccccccccccHHHHHHHHHHhc
Q psy7673 235 DIALKRIKPSVSKADCKNYESLKQRYTTPGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL 313 (541)
Q Consensus 235 ~~al~~~~~~~s~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l 313 (541)
.+|+++++.+ +++..++| |.|... |...||++.+...+.+.+
T Consensus 647 ~kals~~~~~-----------fs~aiGAP--------KIPnV~------------------WdDVGGLeevK~eIldTI 688 (953)
T KOG0736|consen 647 DKALSRLQKE-----------FSDAIGAP--------KIPNVS------------------WDDVGGLEEVKTEILDTI 688 (953)
T ss_pred HHHHHHHHHh-----------hhhhcCCC--------CCCccc------------------hhcccCHHHHHHHHHHHh
Confidence 9999998776 44556664 478876 999999999999998876
No 45
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.93 E-value=4.2e-26 Score=202.70 Aligned_cols=222 Identities=18% Similarity=0.218 Sum_probs=178.9
Q ss_pred ccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCc-eeEeeCEEEEcCChhHHHhhhc----ccCchh
Q psy7673 296 WSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNND-QHIEANHVVSALPAPKLGMLLH----KQHPTL 370 (541)
Q Consensus 296 ~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g-~~~~ad~VI~t~P~~~~~~ll~----~~~~~~ 370 (541)
|.-.-||++|++.|+..| +|+++++|+.|.+.++.|++.+++| ....||.||+|+|+|++..||. ..+..+
T Consensus 101 yvg~pgmsalak~LAtdL----~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l 176 (331)
T COG3380 101 YVGEPGMSALAKFLATDL----TVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAAL 176 (331)
T ss_pred cccCcchHHHHHHHhccc----hhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHH
Confidence 888999999999999998 8999999999999999999999655 4679999999999999999993 345567
Q ss_pred HhhhcCCCCccEEEEEEeeCCC-CCCCCccEEEecCCCCCCceEEEeeccccc-CCCcEEEEEEecCccCCcccCCCCHH
Q psy7673 371 GNLLSSIEHVNVAVINLAYENI-PMKQNAFGFLVPPREKLPILGVVFDSCCFE-QADWTILTVMMGGAWYDTYFKGQSKE 448 (541)
Q Consensus 371 ~~~l~~~~~~~~~~v~l~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~-~~~~~~l~~~~~g~~~~~~~~~~~~e 448 (541)
.+++..+.|.|||.+.++|+.+ +.+.+| .. ..+.++-++..+.++.. ......+++.++..|+++|.+ .++|
T Consensus 177 ~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G--~~---vdg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~-~~~e 250 (331)
T COG3380 177 RAALADVVYAPCWSAVLGYPQPLDRPWPG--NF---VDGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLD-HPAE 250 (331)
T ss_pred HHhhccceehhHHHHHhcCCccCCCCCCC--cc---cCCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhc-CCHH
Confidence 8889999999999999999854 333333 11 23445656666645543 244569999999999999988 8889
Q ss_pred HHHHHHHHHHHhHcCCC-CCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHH
Q psy7673 449 YILDIACRYVHEILDMP-RTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKA 527 (541)
Q Consensus 449 ~~~~~~~~~l~~~~g~~-~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~a 527 (541)
+.+.........+.+.. ++|.+..+|+|+|++|+-..+..-..+ ....+||+||||+.|..+|+|+.||..+
T Consensus 251 ~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~~~~L~a-------d~~~~l~~cGDwc~GgrVEgA~LSGlAa 323 (331)
T COG3380 251 QVIVALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVAGPPLDA-------DRELPLYACGDWCAGGRVEGAVLSGLAA 323 (331)
T ss_pred HHHHHHHHhhhhccCCCCCcchHHHhhccccccccccccCCcccc-------CCCCceeeecccccCcchhHHHhccHHH
Confidence 99988877787777754 679999999999999977665432111 3345899999999999999999999999
Q ss_pred HHHHhhhh
Q psy7673 528 VESIKWQH 535 (541)
Q Consensus 528 a~~i~~~~ 535 (541)
|++| .++
T Consensus 324 A~~i-~~~ 330 (331)
T COG3380 324 ADHI-LNG 330 (331)
T ss_pred HHHH-Hhc
Confidence 9999 443
No 46
>PLN03000 amine oxidase
Probab=99.92 E-value=2.2e-23 Score=220.15 Aligned_cols=229 Identities=13% Similarity=0.163 Sum_probs=180.7
Q ss_pred cccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHH----hhhcccCchh
Q psy7673 295 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLG----MLLHKQHPTL 370 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~----~ll~~~~~~~ 370 (541)
.+.+.|||++|+++|++.| +|+++++|++|.+++++|.|++.+ +++.||+||+|+|+++++ .+.|++++..
T Consensus 373 ~~~v~GG~~~LieaLa~~L----~I~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K 447 (881)
T PLN03000 373 HCFLPGGNGRLVQALAENV----PILYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRK 447 (881)
T ss_pred eEEeCCCHHHHHHHHHhhC----CcccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHH
Confidence 4678999999999999998 599999999999999999998764 479999999999999999 4568888888
Q ss_pred HhhhcCCCCccEEEEEEeeCCCCCCC--CccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCCCHH
Q psy7673 371 GNLLSSIEHVNVAVINLAYENIPMKQ--NAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQSKE 448 (541)
Q Consensus 371 ~~~l~~~~~~~~~~v~l~~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~~~e 448 (541)
.++++++.|+.+.+|.+.|++.+|.. ..||++.+...... .+..|.+.. +..+.++|++|++|..+..+.. ++++
T Consensus 448 ~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg-~~~~f~s~s-p~~G~pVLvafv~Gd~A~~le~-lSde 524 (881)
T PLN03000 448 LDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRG-EFFLFYSYA-PVAGGPLLIALVAGEAAHKFET-MPPT 524 (881)
T ss_pred HHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCc-eeEEEeCCC-CCCCCcEEEEEecCchhHHhhc-CCHH
Confidence 89999999999999999999988875 45777765332221 223333321 2245679999999988777665 8999
Q ss_pred HHHHHHHHHHHhHcCC---C-CCCceeEeeec------cCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEEEcCCCCC--
Q psy7673 449 YILDIACRYVHEILDM---P-RTPHAQHVEIL------KACIPQYTLGHAARVKDIQGYIDTH--QLPLYLTGSSYDG-- 514 (541)
Q Consensus 449 ~~~~~~~~~l~~~~g~---~-~~~~~~~~~~w------~~a~p~~~~g~~~~~~~~~~~l~~~--~~~l~laG~~~~g-- 514 (541)
++++.+++.|++++|. . ++|....+++| ++++..+.+|.....- ..+..+ .++|||||+++..
T Consensus 525 E~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~---d~LaePv~~GRIfFAGEaTs~~~ 601 (881)
T PLN03000 525 DAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDY---DILAESVGDGRLFFAGEATTRRY 601 (881)
T ss_pred HHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHH---HHHhCcCCCCcEEEeehHHhCCC
Confidence 9999999999999973 2 46888999999 4666667777543211 123333 3589999998852
Q ss_pred -CChHHHHHHHHHHHHHHhhh
Q psy7673 515 -VGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 515 -~~v~~ai~sg~~aa~~i~~~ 534 (541)
..|++|+.||.|+|++|+..
T Consensus 602 ~GTVhGAieSGlRAA~eIl~~ 622 (881)
T PLN03000 602 PATMHGAFVTGLREAANMAQS 622 (881)
T ss_pred CeeHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999544
No 47
>KOG0735|consensus
Probab=99.91 E-value=2.6e-23 Score=206.99 Aligned_cols=248 Identities=22% Similarity=0.337 Sum_probs=197.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
...+.++||+||+|+|||.|++++++++ .+++..++|+.+-......+.+.+..+|.++.+..|+||+|||+|.|+
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 4566789999999999999999999988 578889999999888888889999999999999999999999999999
Q ss_pred CCC-CCCCCCChhHHHHHHHH-HHhcCC-CCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHh
Q psy7673 88 PKR-SSLGDNNSSMRIVNQLL-TEMDGF-EGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 88 ~~~-~~~~~~~~~~~~~~~l~-~~l~~~-~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~ 164 (541)
+.. ..+++.......+..++ +.+..+ ..+..+.||++.+..+.+++.|.++++|+..+.++.|...+|.+||+..+.
T Consensus 508 ~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s 587 (952)
T KOG0735|consen 508 SASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFS 587 (952)
T ss_pred ccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHH
Confidence 832 22233333344444444 333333 334457999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCCC
Q psy7673 165 QGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKPS 244 (541)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 244 (541)
+.......+ |++.++ ..|+||.+.|+..++++|...|+.+.... .++.+|.++|.++|+.+.|.
T Consensus 588 ~~~~~~~~~--dLd~ls--~~TEGy~~~DL~ifVeRai~~a~leris~------------~~klltke~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 588 KNLSDITMD--DLDFLS--VKTEGYLATDLVIFVERAIHEAFLERISN------------GPKLLTKELFEKSLKDFVPL 651 (952)
T ss_pred hhhhhhhhH--HHHHHH--HhcCCccchhHHHHHHHHHHHHHHHHhcc------------CcccchHHHHHHHHHhcChH
Confidence 865333333 445577 89999999999999999999998543322 22369999999999999887
Q ss_pred CChhhhhhhHHHhhhhcCccchhhccccCCC-CCCcchhhHhhhhhhcccccccccccHHHHHHHHHHhc
Q psy7673 245 VSKADCKNYESLKQRYTTPGAIKEMMSKRPD-LSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL 313 (541)
Q Consensus 245 ~s~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l 313 (541)
.++.....++. +. |...|||....+.|.+-+
T Consensus 652 --------------------aLR~ik~~k~tgi~------------------w~digg~~~~k~~l~~~i 683 (952)
T KOG0735|consen 652 --------------------ALRGIKLVKSTGIR------------------WEDIGGLFEAKKVLEEVI 683 (952)
T ss_pred --------------------HhhhccccccCCCC------------------ceecccHHHHHHHHHHHH
Confidence 44444332332 44 889999999999998877
No 48
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.91 E-value=7.1e-23 Score=216.71 Aligned_cols=229 Identities=12% Similarity=0.125 Sum_probs=177.0
Q ss_pred cccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHh----hhcccCchh
Q psy7673 295 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGM----LLHKQHPTL 370 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~~~~~ 370 (541)
.+.+.|||++|+++|++.+ .|++|++|++|.+.+++|.|. .+|+++.||+||+|+|++++++ +.|++++..
T Consensus 429 ~~~v~GG~~~Li~aLa~~L----~I~ln~~V~~I~~~~dgV~V~-~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K 503 (808)
T PLN02328 429 HCFIPGGNDTFVRELAKDL----PIFYERTVESIRYGVDGVIVY-AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRK 503 (808)
T ss_pred EEEECCcHHHHHHHHHhhC----CcccCCeeEEEEEcCCeEEEE-eCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHH
Confidence 5778999999999999998 599999999999998899884 5677899999999999999984 457778888
Q ss_pred HhhhcCCCCccEEEEEEeeCCCCCCC--CccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCCCHH
Q psy7673 371 GNLLSSIEHVNVAVINLAYENIPMKQ--NAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQSKE 448 (541)
Q Consensus 371 ~~~l~~~~~~~~~~v~l~~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~~~e 448 (541)
.++++++.|+++.+|++.|++++|.. ..||++......... ...|.+.. ...+..+|++|++|.++..+.. ++++
T Consensus 504 ~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~-~~lf~s~s-~~~G~~vLvafv~G~~A~~~e~-lsde 580 (808)
T PLN02328 504 KDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGE-FFLFYSYS-SVSGGPLLIALVAGDAAVKFET-LSPV 580 (808)
T ss_pred HHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCce-EEEEecCC-CCCCCcEEEEEecChhhHHHhc-CCHH
Confidence 89999999999999999999988874 457777642211111 12232211 1235679999999998887766 8899
Q ss_pred HHHHHHHHHHHhHcCC----CCCCceeEeeecc------CCCCCCCCCHHHHHHHHHHHHhhC--CCCEEEEcCCCCC--
Q psy7673 449 YILDIACRYVHEILDM----PRTPHAQHVEILK------ACIPQYTLGHAARVKDIQGYIDTH--QLPLYLTGSSYDG-- 514 (541)
Q Consensus 449 ~~~~~~~~~l~~~~g~----~~~~~~~~~~~w~------~a~p~~~~g~~~~~~~~~~~l~~~--~~~l~laG~~~~g-- 514 (541)
++++.+++.|++++|. .++|....+++|. +++..+.+|..... ...+..+ .++|||||+++..
T Consensus 581 E~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~---~~~LaePv~~GRL~FAGEaTs~~~ 657 (808)
T PLN02328 581 ESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDD---YDILAESVGDGRVFFAGEATNKQY 657 (808)
T ss_pred HHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhH---HHHHhccCCCCCEEEEEhhHhCCC
Confidence 9999999999999974 2468899999996 44555566653221 1123333 3589999999953
Q ss_pred -CChHHHHHHHHHHHHHHhhh
Q psy7673 515 -VGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 515 -~~v~~ai~sg~~aa~~i~~~ 534 (541)
+.|++|+.||.++|++|+..
T Consensus 658 ~GtVhGAi~SGlRAA~eIl~~ 678 (808)
T PLN02328 658 PATMHGAFLSGMREAANILRV 678 (808)
T ss_pred CeEhHHHHHHHHHHHHHHHHH
Confidence 36999999999999999543
No 49
>PLN02529 lysine-specific histone demethylase 1
Probab=99.90 E-value=1.9e-22 Score=212.81 Aligned_cols=228 Identities=12% Similarity=0.146 Sum_probs=173.7
Q ss_pred cccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhh----hcccCchh
Q psy7673 295 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGML----LHKQHPTL 370 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~l----l~~~~~~~ 370 (541)
.+.+.|||++|+++|++.+ +|++|++|++|.+++++|+|++. ++++.||+||+|+|++++++. .|++|+..
T Consensus 349 ~~~i~GG~~~Li~aLA~~L----~IrLnt~V~~I~~~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K 423 (738)
T PLN02529 349 HCFLAGGNWRLINALCEGV----PIFYGKTVDTIKYGNDGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRK 423 (738)
T ss_pred eEEECCcHHHHHHHHHhcC----CEEcCCceeEEEEcCCeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHH
Confidence 5779999999999999987 69999999999999999999864 457999999999999999853 36677777
Q ss_pred HhhhcCCCCccEEEEEEeeCCCCCCC--CccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCCCHH
Q psy7673 371 GNLLSSIEHVNVAVINLAYENIPMKQ--NAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQSKE 448 (541)
Q Consensus 371 ~~~l~~~~~~~~~~v~l~~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~~~e 448 (541)
.++++++.|+++.+|++.|++++|+. ..+|++......... .++|.+.. ...+.+++.+|++|..+..+.. ++++
T Consensus 424 ~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~-~~~~~~~~-~~~ggpvLvafv~G~~A~~le~-lsde 500 (738)
T PLN02529 424 LAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGE-FFLFYGYH-TVSGGPALVALVAGEAAQRFEN-TDPS 500 (738)
T ss_pred HHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCce-EEEEecCC-CCCCCCEEEEEECchhhHHHhc-CCHH
Confidence 89999999999999999999988864 457777654333222 22332221 1224468899999988877665 8999
Q ss_pred HHHHHHHHHHHhHcCCC----CCCceeEeeecc------CCCCCCCCCHHHHHHHHHHHHhhC-CCCEEEEcCCCCC---
Q psy7673 449 YILDIACRYVHEILDMP----RTPHAQHVEILK------ACIPQYTLGHAARVKDIQGYIDTH-QLPLYLTGSSYDG--- 514 (541)
Q Consensus 449 ~~~~~~~~~l~~~~g~~----~~~~~~~~~~w~------~a~p~~~~g~~~~~~~~~~~l~~~-~~~l~laG~~~~g--- 514 (541)
++++.+++.|++++|.. ++|....+++|. +++....+|.... .. ..+..+ .++|||||+++..
T Consensus 501 eii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~--d~-~~La~pv~grL~FAGEaTs~~~p 577 (738)
T PLN02529 501 TLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGS--DY-DILAESVSGRLFFAGEATTRQYP 577 (738)
T ss_pred HHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchh--HH-HHHhCCCCCCEEEEEHHHhCCCC
Confidence 99999999999999742 367888999996 3333334443211 11 223333 5689999999953
Q ss_pred CChHHHHHHHHHHHHHHhh
Q psy7673 515 VGVNDVIALSKKAVESIKW 533 (541)
Q Consensus 515 ~~v~~ai~sg~~aa~~i~~ 533 (541)
..|++|++||.++|++|+.
T Consensus 578 gtVeGAi~SG~RAA~eIl~ 596 (738)
T PLN02529 578 ATMHGAFLSGLREASRILH 596 (738)
T ss_pred eEeHHHHHHHHHHHHHHHH
Confidence 3699999999999999954
No 50
>PLN02268 probable polyamine oxidase
Probab=99.89 E-value=5.2e-22 Score=204.29 Aligned_cols=226 Identities=17% Similarity=0.194 Sum_probs=175.4
Q ss_pred ccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhh----cccCchhH
Q psy7673 296 WSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLL----HKQHPTLG 371 (541)
Q Consensus 296 ~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll----~~~~~~~~ 371 (541)
..+.+||++++++|++.+ +|+++++|++|.+++++|.|++.+|+++.||+||+|+|++++++.+ |++++...
T Consensus 194 ~~~~~G~~~l~~~l~~~~----~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~ 269 (435)
T PLN02268 194 GLMVRGYDPVINTLAKGL----DIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKE 269 (435)
T ss_pred eeecCCHHHHHHHHhccC----ceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHH
Confidence 347889999999998876 7999999999999988999999888889999999999999997642 55666678
Q ss_pred hhhcCCCCccEEEEEEeeCCCCCCCCc-cEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCCCHHHH
Q psy7673 372 NLLSSIEHVNVAVINLAYENIPMKQNA-FGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQSKEYI 450 (541)
Q Consensus 372 ~~l~~~~~~~~~~v~l~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~~~e~~ 450 (541)
++++++.|+++.++.+.|++++|+..+ +|++.+... .. ..++ +.....+..++++|++|..+.++.. ++++++
T Consensus 270 ~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~--~~--~~~~-~~~~~~g~~~l~~~~~g~~a~~~~~-~~~~e~ 343 (435)
T PLN02268 270 EAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTSY--GC--SYFL-NLHKATGHPVLVYMPAGRLARDIEK-LSDEAA 343 (435)
T ss_pred HHHHhCCccceeEEEEEeCCCCCCCCceeeccCCCCC--Cc--eEEE-ecccCCCCCEEEEEeccHHHHHHHh-CCHHHH
Confidence 889999999999999999998887543 454443211 11 1122 2222245568889999888777765 899999
Q ss_pred HHHHHHHHHhHcCCCCCCceeEeeecc------CCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCC---CChHHHH
Q psy7673 451 LDIACRYVHEILDMPRTPHAQHVEILK------ACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDG---VGVNDVI 521 (541)
Q Consensus 451 ~~~~~~~l~~~~g~~~~~~~~~~~~w~------~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g---~~v~~ai 521 (541)
++.++++|+++++...+|....+++|. +++..+.+|+.... ...+..+.++|||||+++.. +.|++|+
T Consensus 344 ~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~---~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~ 420 (435)
T PLN02268 344 ANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDL---YERLRAPVDNLFFAGEATSSDFPGSVHGAY 420 (435)
T ss_pred HHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCCCCCCHHH---HHHHhCCCCCeEEeeccCCCcccccHHHHH
Confidence 999999999999876778999999995 44555567753221 12344567799999999953 4699999
Q ss_pred HHHHHHHHHHhhh
Q psy7673 522 ALSKKAVESIKWQ 534 (541)
Q Consensus 522 ~sg~~aa~~i~~~ 534 (541)
.||.++|++|+..
T Consensus 421 ~sG~raA~~v~~~ 433 (435)
T PLN02268 421 STGVMAAEECRMR 433 (435)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999654
No 51
>PLN02976 amine oxidase
Probab=99.89 E-value=4.2e-22 Score=215.59 Aligned_cols=229 Identities=14% Similarity=0.139 Sum_probs=173.3
Q ss_pred cccccccHHHHHHHHHHhccCCcEEeccceeeEEEEe----------CCcEEEEecCceeEeeCEEEEcCChhHHHh---
Q psy7673 295 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFL----------EKGVKVTLNNDQHIEANHVVSALPAPKLGM--- 361 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~----------~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~--- 361 (541)
.+.+.|||++|+++|++.+ .|++|++|++|.++ +++|.|++.+|+++.||+||+|+|+++++.
T Consensus 928 ~~rIkGGYqqLIeALAe~L----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag~I 1003 (1713)
T PLN02976 928 HCMIKGGYSNVVESLAEGL----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAETI 1003 (1713)
T ss_pred eEEeCCCHHHHHHHHHhhC----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhccc
Confidence 5779999999999999988 69999999999984 467999999998899999999999999973
Q ss_pred -hhcccCchhHhhhcCCCCccEEEEEEeeCCCCCCCC--ccEEEecCCCCCCceEEEeecc-cccCCCcEEEEEEecCcc
Q psy7673 362 -LLHKQHPTLGNLLSSIEHVNVAVINLAYENIPMKQN--AFGFLVPPREKLPILGVVFDSC-CFEQADWTILTVMMGGAW 437 (541)
Q Consensus 362 -ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~--~~g~l~~~~~~~~~~~~~~~s~-~~~~~~~~~l~~~~~g~~ 437 (541)
+-|++|+...+++.++.|+.+.++++.|++++|+.. +||... ++.+..+.+|... .....+..+|.+|+.|..
T Consensus 1004 ~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~---edtdlrG~~~~~wnlr~psG~pVLVafv~G~a 1080 (1713)
T PLN02976 1004 KFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATA---EETDLRGQCFMFWNVKKTVGAPVLIALVVGKA 1080 (1713)
T ss_pred ccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCcccccc---ccCCCCceEEEeccCCCCCCCCEEEEEeccHh
Confidence 337777777788999999999999999999988863 344332 1112233322211 011234567888888877
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhHcCCC--CCCceeEeeecc------CCCCCCCCCHHHHHHHHHHHHhhCCC-CEEEE
Q psy7673 438 YDTYFKGQSKEYILDIACRYVHEILDMP--RTPHAQHVEILK------ACIPQYTLGHAARVKDIQGYIDTHQL-PLYLT 508 (541)
Q Consensus 438 ~~~~~~~~~~e~~~~~~~~~l~~~~g~~--~~~~~~~~~~w~------~a~p~~~~g~~~~~~~~~~~l~~~~~-~l~la 508 (541)
+..+.. ++++++++.+++.|+++||.. ++|....+++|. +++..+.+|..... ...+..+.. +||||
T Consensus 1081 AreiEs-LSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d---~d~LAePVggRLFFA 1156 (1713)
T PLN02976 1081 AIDGQS-MSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGED---YDILGRPVENCLFFA 1156 (1713)
T ss_pred HHHHhh-CCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchH---HHHHhCCCCCcEEEE
Confidence 766554 889999999999999999854 578899999993 44555556654322 123444543 59999
Q ss_pred cCCCC---CCChHHHHHHHHHHHHHHhhh
Q psy7673 509 GSSYD---GVGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 509 G~~~~---g~~v~~ai~sg~~aa~~i~~~ 534 (541)
|.++. .+.|++|+.||.|+|++|+..
T Consensus 1157 GEATS~~~pGTVHGAIeSG~RAA~eIL~~ 1185 (1713)
T PLN02976 1157 GEATCKEHPDTVGGAMMSGLREAVRIIDI 1185 (1713)
T ss_pred ehhhhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 99883 346999999999999999543
No 52
>PLN02676 polyamine oxidase
Probab=99.87 E-value=4.9e-21 Score=197.28 Aligned_cols=229 Identities=11% Similarity=0.062 Sum_probs=171.5
Q ss_pred cccHHHHHHHHHHhcc-C------CcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHh--h--hcccC
Q psy7673 299 EGGLQTIVNTLGEHLS-N------KVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGM--L--LHKQH 367 (541)
Q Consensus 299 ~~G~~~l~~~l~~~l~-~------~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~--l--l~~~~ 367 (541)
++|+++|+++|++.+. . +.+|++|++|++|.+++++|.|++.+|+++.||+||+|+|+.++++ + -|++|
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP 299 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP 299 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCC
Confidence 6899999999999872 1 2479999999999999999999999998899999999999999986 3 26677
Q ss_pred chhHhhhcCCCCccEEEEEEeeCCCCCCCC-ccEEEecCCCCCC--ceEEEeecccccCCCcEEEEEEecCccCCcccCC
Q psy7673 368 PTLGNLLSSIEHVNVAVINLAYENIPMKQN-AFGFLVPPREKLP--ILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKG 444 (541)
Q Consensus 368 ~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~g~l~~~~~~~~--~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~ 444 (541)
+...++++++.++.+.++++.|++++|+.. +..++.....+.. ..+..++.. ..+...+.+++.|..+..+..
T Consensus 300 ~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~g~~a~~~~~- 375 (487)
T PLN02676 300 DWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENE---YPGSNVLFVTVTDEESRRIEQ- 375 (487)
T ss_pred HHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccC---CCCCCEEEEEechHHHHHHHh-
Confidence 777789999999999999999999999752 2122221111111 101111111 123347778887766665544
Q ss_pred CCHHHHHHHHHHHHHhHcCCC-CCCceeEeeecc------CCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCC---C
Q psy7673 445 QSKEYILDIACRYVHEILDMP-RTPHAQHVEILK------ACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYD---G 514 (541)
Q Consensus 445 ~~~e~~~~~~~~~l~~~~g~~-~~~~~~~~~~w~------~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~---g 514 (541)
+++++..+.+++.|++++|.. ..|.....+.|. +++..+.+|+..... ..+..+.++|||||+.+. .
T Consensus 376 ~s~e~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~---~~L~~P~gri~FAGe~ts~~~~ 452 (487)
T PLN02676 376 QPDSETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEF---DQIRAPVGRVYFTGEHTSEKYN 452 (487)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHH---HHHhCCCCceEEeccccccccc
Confidence 889999999999999999854 467888889993 666677778654332 234457779999999884 3
Q ss_pred CChHHHHHHHHHHHHHHhhh
Q psy7673 515 VGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 515 ~~v~~ai~sg~~aa~~i~~~ 534 (541)
+.|++|++||.++|++|+..
T Consensus 453 g~~eGA~~SG~RaA~~I~~~ 472 (487)
T PLN02676 453 GYVHGAYLAGIDTANDLLEC 472 (487)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 46999999999999999654
No 53
>PLN02568 polyamine oxidase
Probab=99.87 E-value=6.3e-21 Score=197.69 Aligned_cols=237 Identities=11% Similarity=0.084 Sum_probs=172.7
Q ss_pred cccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHh--------hhccc
Q psy7673 295 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGM--------LLHKQ 366 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~--------ll~~~ 366 (541)
.+++.+|+++|+++|++.+..+ .|++|++|++|.+++++|.|++.+|+++.||+||+|+|++++++ +.|++
T Consensus 234 ~~~i~gG~~~Li~~La~~L~~~-~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~L 312 (539)
T PLN02568 234 EITIAKGYLSVIEALASVLPPG-TIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPL 312 (539)
T ss_pred eEEECCcHHHHHHHHHhhCCCC-EEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCC
Confidence 4789999999999999999544 79999999999999999999998888899999999999999985 33667
Q ss_pred CchhHhhhcCCCCccEEEEEEeeCCCCCCC-C------ccEEEecCCCC----CCceEEEeec-cccc-CCCcEEEEEEe
Q psy7673 367 HPTLGNLLSSIEHVNVAVINLAYENIPMKQ-N------AFGFLVPPREK----LPILGVVFDS-CCFE-QADWTILTVMM 433 (541)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~-~------~~g~l~~~~~~----~~~~~~~~~s-~~~~-~~~~~~l~~~~ 433 (541)
|+...++++++.|+.+.++++.|++++|.. . .++++...... .....++... ...+ ..+.++|.+|+
T Consensus 313 P~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~ 392 (539)
T PLN02568 313 PDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWF 392 (539)
T ss_pred CHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEe
Confidence 777788999999999999999999886642 1 11222111100 0000010000 0011 23567889999
Q ss_pred cCccCCcccCCCCHHHHHHHHHHHHHhHcCCC-----------------------CCCceeEeeec------cCCCCCCC
Q psy7673 434 GGAWYDTYFKGQSKEYILDIACRYVHEILDMP-----------------------RTPHAQHVEIL------KACIPQYT 484 (541)
Q Consensus 434 ~g~~~~~~~~~~~~e~~~~~~~~~l~~~~g~~-----------------------~~~~~~~~~~w------~~a~p~~~ 484 (541)
+|..+.++.. ++++++++.+++.|++++|.. ..|....+++| ++++....
T Consensus 393 ~G~~A~~~e~-l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~ 471 (539)
T PLN02568 393 AGKEALELEK-LSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVA 471 (539)
T ss_pred ccHHHHHHHc-CCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCc
Confidence 9987776655 899999999999999999743 24778888999 35556555
Q ss_pred CCHHHH-HHHHHHHHh---------hCCCCEEEEcCCCC---CCChHHHHHHHHHHHHHHhh
Q psy7673 485 LGHAAR-VKDIQGYID---------THQLPLYLTGSSYD---GVGVNDVIALSKKAVESIKW 533 (541)
Q Consensus 485 ~g~~~~-~~~~~~~l~---------~~~~~l~laG~~~~---g~~v~~ai~sg~~aa~~i~~ 533 (541)
+|.... ...+.+.+. .+.++|||||.+++ ...|++|+.||.|+|++|+.
T Consensus 472 ~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~ 533 (539)
T PLN02568 472 VGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQ 533 (539)
T ss_pred CCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHH
Confidence 775432 233332221 12237999999884 23599999999999999944
No 54
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.87 E-value=5.9e-21 Score=184.34 Aligned_cols=232 Identities=11% Similarity=0.065 Sum_probs=179.3
Q ss_pred cccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhh--cccCchhHh
Q psy7673 295 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLL--HKQHPTLGN 372 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll--~~~~~~~~~ 372 (541)
++...|||+.|++++++.++. .|.++++|.+|.+++++|+|++.+..++.+|+||+|+|+..+.++. |.+++++.+
T Consensus 201 ~~~~~GGmd~la~Afa~ql~~--~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~ 278 (450)
T COG1231 201 MLQRLGGMDQLAEAFAKQLGT--RILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQ 278 (450)
T ss_pred hhccCccHHHHHHHHHHHhhc--eEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHH
Confidence 344559999999999999943 6999999999999999999999884579999999999999999985 547788889
Q ss_pred hhcCCCCccEEEEEEeeCCCCCCCCc-cEEEecCCCCCCceEEEeecccccCCCc-EEEEEEecCccCCcccCCCCHHHH
Q psy7673 373 LLSSIEHVNVAVINLAYENIPMKQNA-FGFLVPPREKLPILGVVFDSCCFEQADW-TILTVMMGGAWYDTYFKGQSKEYI 450 (541)
Q Consensus 373 ~l~~~~~~~~~~v~l~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~s~~~~~~~~-~~l~~~~~g~~~~~~~~~~~~e~~ 450 (541)
++..+.|.++.++.+.|++++|...+ ++...-.+. .+.-+.++|. ....+. .++-.+..|..+..+.. +++++.
T Consensus 279 a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~--~~~~i~~~s~-~~~~G~gVl~g~~~~g~~A~~~~~-~~~~~r 354 (450)
T COG1231 279 AAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDL--GLGFISYPSA-PFADGPGVLLGSYAFGDDALVIDA-LPEAER 354 (450)
T ss_pred HhcCcCcchheeeeeecCchhhhhcccCCceEeecC--CcceEecCcc-ccCCCceEEEeeeeccccceeEec-CCHHHH
Confidence 99999999999999999999999888 776664444 3445666666 333444 44444555777777766 899999
Q ss_pred HHHHHHHHHhHcCCC-CCCcee-EeeeccC------CCCCCCCCHHHHHHHHHHHHhhCCCCEEEEc-CCC--CCCChHH
Q psy7673 451 LDIACRYVHEILDMP-RTPHAQ-HVEILKA------CIPQYTLGHAARVKDIQGYIDTHQLPLYLTG-SSY--DGVGVND 519 (541)
Q Consensus 451 ~~~~~~~l~~~~g~~-~~~~~~-~~~~w~~------a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG-~~~--~g~~v~~ 519 (541)
++.++..+.+++|.. ..+... ..++|.. +...+++|.. ..+...+..+.++|+||| .+. -++++++
T Consensus 355 ~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~---~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eG 431 (450)
T COG1231 355 RQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQR---TKLYPTLPAPHGRIHFAGTEHASEFGGWLEG 431 (450)
T ss_pred HHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCccc---ccccccccCCCCceEEeeecccccccchhHH
Confidence 999999999999954 455554 7888853 2344444432 223334556778999999 444 3668999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy7673 520 VIALSKKAVESIKWQH 535 (541)
Q Consensus 520 ai~sg~~aa~~i~~~~ 535 (541)
||+||.+||.+|+...
T Consensus 432 Ai~Sg~~AA~ei~~~l 447 (450)
T COG1231 432 AIRSGQRAAAEIHALL 447 (450)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999996543
No 55
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.87 E-value=2.2e-21 Score=200.62 Aligned_cols=229 Identities=24% Similarity=0.272 Sum_probs=172.3
Q ss_pred cccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHh--hhcccCchhHhhhcC
Q psy7673 299 EGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGM--LLHKQHPTLGNLLSS 376 (541)
Q Consensus 299 ~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~--ll~~~~~~~~~~l~~ 376 (541)
.|++..+...+++.+ +++|+++++|++|+.+++++.|++.+|+++.||+||+|+|++.+.+ +.++.+.....++++
T Consensus 208 ~g~~~~~~~~~~~~~--g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~ 285 (450)
T PF01593_consen 208 MGGLSLALALAAEEL--GGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLPEDKRRAIEN 285 (450)
T ss_dssp TTTTHHHHHHHHHHH--GGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSHHHHHHHHHT
T ss_pred ccchhHHHHHHHhhc--CceeecCCcceeccccccccccccccceEEecceeeecCchhhhhhhhhcccccccccccccc
Confidence 455555555555544 2489999999999999999999999998999999999999999995 556665556788899
Q ss_pred CCCccEEEEEEeeCCCCCCCC--ccEEEecCCCCCCceEEEeecccccC-CCcEEEEEEecCccCCcccCCCCHHHHHHH
Q psy7673 377 IEHVNVAVINLAYENIPMKQN--AFGFLVPPREKLPILGVVFDSCCFEQ-ADWTILTVMMGGAWYDTYFKGQSKEYILDI 453 (541)
Q Consensus 377 ~~~~~~~~v~l~~~~~~~~~~--~~g~l~~~~~~~~~~~~~~~s~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~e~~~~~ 453 (541)
+.|.++.++++.|+..+|+.. .++++.... .....++++++..++ .+...++.++.+..+.++.. .+++++++.
T Consensus 286 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~e~~~~~ 362 (450)
T PF01593_consen 286 LPYSSVSKVFLGFDRPFWPPDIDFFGILYSDG--FSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDD-LSDEEILER 362 (450)
T ss_dssp EEEEEEEEEEEEESSGGGGSTTTESEEEEESS--TSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTT-SCHHHHHHH
T ss_pred cccCcceeEEEeeecccccccccccceecccC--ccccccccccccCcccccCCcceeeeeccccchhcc-cchhhhHHH
Confidence 999999999999998887774 677777554 334455555555443 45677777777766655544 899999999
Q ss_pred HHHHHHhHcCC--CCCCceeEeeeccC-CCCCCCCCHHHHHHH--HHHHHhhCC-CCEEEEcCCCCCC---ChHHHHHHH
Q psy7673 454 ACRYVHEILDM--PRTPHAQHVEILKA-CIPQYTLGHAARVKD--IQGYIDTHQ-LPLYLTGSSYDGV---GVNDVIALS 524 (541)
Q Consensus 454 ~~~~l~~~~g~--~~~~~~~~~~~w~~-a~p~~~~g~~~~~~~--~~~~l~~~~-~~l~laG~~~~g~---~v~~ai~sg 524 (541)
++++|+++++. ..+|....+++|.. .++++..++...... ....+..+. +||||||+|+.+. ++++|+.||
T Consensus 363 ~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG 442 (450)
T PF01593_consen 363 VLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSG 442 (450)
T ss_dssp HHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHH
T ss_pred HHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHH
Confidence 99999999984 35567778899976 666665555444333 444455555 6999999999644 899999999
Q ss_pred HHHHHHHh
Q psy7673 525 KKAVESIK 532 (541)
Q Consensus 525 ~~aa~~i~ 532 (541)
.+||++||
T Consensus 443 ~~aA~~il 450 (450)
T PF01593_consen 443 RRAAEEIL 450 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999984
No 56
>PRK07233 hypothetical protein; Provisional
Probab=99.87 E-value=1.5e-20 Score=194.08 Aligned_cols=229 Identities=19% Similarity=0.261 Sum_probs=173.5
Q ss_pred cccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhh
Q psy7673 295 VWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNL 373 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~ 373 (541)
.+.++||++.+.++|++.+ ..|++|+++++|++|..+++++.+...+++.+.||+||+|+|++.+.+++++.++...+.
T Consensus 190 ~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~~~~~~~ 269 (434)
T PRK07233 190 LGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLPADVLAR 269 (434)
T ss_pred EeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhcCCCcHHHHhh
Confidence 4678999999999999999 557899999999999988888866556677899999999999999999998776666778
Q ss_pred hcCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccC---CCcEEE--EEEecCccCCcccCCCCHH
Q psy7673 374 LSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQ---ADWTIL--TVMMGGAWYDTYFKGQSKE 448 (541)
Q Consensus 374 l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~---~~~~~l--~~~~~g~~~~~~~~~~~~e 448 (541)
++++.|.++.++++.++.+..+ .+ ++.....+.++.++++.++.++. .+.+.+ ++++.+. .+... ++++
T Consensus 270 ~~~~~~~~~~~~~l~~~~~~~~--~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~--~~~~~-~~~~ 343 (434)
T PRK07233 270 LRRIDYQGVVCMVLKLRRPLTD--YY-WLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGD--HPLWQ-MSDE 343 (434)
T ss_pred hcccCccceEEEEEEecCCCCC--Cc-eeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCC--Chhhc-CCHH
Confidence 8899999999999999875433 22 22222333456666666655443 234433 3344322 22333 6889
Q ss_pred HHHHHHHHHHHhHcC-CC-CCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCC---CCCChHHHHHH
Q psy7673 449 YILDIACRYVHEILD-MP-RTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSY---DGVGVNDVIAL 523 (541)
Q Consensus 449 ~~~~~~~~~l~~~~g-~~-~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~---~g~~v~~ai~s 523 (541)
++++.++++|.++++ .. ..+....+.+|++++|.|.+|+....+.++ ++.+|||+|||+. .+.++++|+.|
T Consensus 344 ~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~----~~~~~l~~aG~~~~~~~~~~~~~Ai~s 419 (434)
T PRK07233 344 ELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYD----TPIEGLYLAGMSQIYPEDRSINGSVRA 419 (434)
T ss_pred HHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcc----cCcCCEEEeCCcccCCccCchhHHHHH
Confidence 999999999999987 32 346788899999999999999765444432 3567999999964 24589999999
Q ss_pred HHHHHHHHhh
Q psy7673 524 SKKAVESIKW 533 (541)
Q Consensus 524 g~~aa~~i~~ 533 (541)
|.+||++|+.
T Consensus 420 G~~aA~~i~~ 429 (434)
T PRK07233 420 GRRVAREILE 429 (434)
T ss_pred HHHHHHHHhh
Confidence 9999999944
No 57
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.87 E-value=1e-20 Score=194.33 Aligned_cols=222 Identities=17% Similarity=0.159 Sum_probs=164.8
Q ss_pred cccccccHHHHHHH-HHHhc-cCCcEEeccceeeEEEEeCCcEEEEe-cCceeEeeCEEEEcCChhHHHhhhcccCchhH
Q psy7673 295 VWSVEGGLQTIVNT-LGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTL-NNDQHIEANHVVSALPAPKLGMLLHKQHPTLG 371 (541)
Q Consensus 295 ~~~~~~G~~~l~~~-l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~-~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~ 371 (541)
.+.+.+|+++++.. |++.+ ..|++|++|++|++|.+++++|.+.. .+|+.+.||+||+|+|++++.+++++ +...
T Consensus 188 ~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~--~~~~ 265 (419)
T TIGR03467 188 LLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLLPG--EDLG 265 (419)
T ss_pred eeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhCCC--chHH
Confidence 57778999887654 88888 56789999999999999888866543 36677899999999999999999864 2466
Q ss_pred hhhcCCCCccEEEEEEeeCCCCCCC-CccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCCCHHHH
Q psy7673 372 NLLSSIEHVNVAVINLAYENIPMKQ-NAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQSKEYI 450 (541)
Q Consensus 372 ~~l~~~~~~~~~~v~l~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~~~e~~ 450 (541)
++++++.|.+++++++.|+++.|.. ..++++. .+. .++++....++. ...+.+++.+ +.++.. ++++++
T Consensus 266 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~-~~~e~~ 335 (419)
T TIGR03467 266 ALLTALGYSPITTVHLRLDRAVRLPAPMVGLVG-----GLA-QWLFDRGQLAGE-PGYLAVVISA--ARDLVD-LPREEL 335 (419)
T ss_pred HHHhhcCCcceEEEEEEeCCCcCCCCCeeeecC-----Cce-eEEEECCcCCCC-CCEEEEEEec--chhhcc-CCHHHH
Confidence 7788999999999999999876543 3344421 122 233332222222 2355556644 344544 889999
Q ss_pred HHHHHHHHHhHcCCC--CCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCC---ChHHHHHHHH
Q psy7673 451 LDIACRYVHEILDMP--RTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGV---GVNDVIALSK 525 (541)
Q Consensus 451 ~~~~~~~l~~~~g~~--~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~---~v~~ai~sg~ 525 (541)
++.++++|.+++|.. ..+.+..+.+|.++.|.+.+|+.. .+..+.++.++|||||||+.+. .+++|++||.
T Consensus 336 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~ 411 (419)
T TIGR03467 336 ADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNR----LRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGY 411 (419)
T ss_pred HHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccc----cCCCCCCCcCCEEEecccccCCCcchHHHHHHHHH
Confidence 999999999999865 456788899999988888888642 1222334567999999999653 6899999999
Q ss_pred HHHHHHh
Q psy7673 526 KAVESIK 532 (541)
Q Consensus 526 ~aa~~i~ 532 (541)
++|++|+
T Consensus 412 ~aA~~i~ 418 (419)
T TIGR03467 412 QAAEAVL 418 (419)
T ss_pred HHHHHHh
Confidence 9999983
No 58
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.84 E-value=2.3e-20 Score=158.82 Aligned_cols=129 Identities=46% Similarity=0.808 Sum_probs=115.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcC-CceEEEcCCccccCCCCCCCCC
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQ-PCVIFFDEIDALCPKRSSLGDN 96 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~il~iDe~d~l~~~~~~~~~~ 96 (541)
|||+||||||||++++.+|+.++.+++.+++.++.+.+.+.....+..+|..+.... |+||+|||+|.+.+.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 689999999999999999999999999999999998889999999999999998887 9999999999999887 32345
Q ss_pred ChhHHHHHHHHHHhcCCCCC-CCeEEEEecCCCCCCCccccCCCCCCeEEEec
Q psy7673 97 NSSMRIVNQLLTEMDGFEGR-GGVFLMAATNRPDIIDPAVMRPGRFDRILFVN 148 (541)
Q Consensus 97 ~~~~~~~~~l~~~l~~~~~~-~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~ 148 (541)
......++.|+..++..... .+++||+|||.++.+++.+++ +||+..|+++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred cccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 56677889999999987665 569999999999999999996 6999999886
No 59
>PRK07208 hypothetical protein; Provisional
Probab=99.84 E-value=4.9e-19 Score=184.55 Aligned_cols=236 Identities=17% Similarity=0.173 Sum_probs=168.4
Q ss_pred cccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEE--EEe--cCce--eEeeCEEEEcCChhHHHhhhc-cc
Q psy7673 295 VWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVK--VTL--NNDQ--HIEANHVVSALPAPKLGMLLH-KQ 366 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~--v~~--~~g~--~~~ad~VI~t~P~~~~~~ll~-~~ 366 (541)
+..+++|++.|+++|++.+ ..|++|++|++|++|.++++++. ++. .+|. .+.||+||+|+|++.+.++++ +.
T Consensus 210 ~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~ 289 (479)
T PRK07208 210 FRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPP 289 (479)
T ss_pred EeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCC
Confidence 4557999999999999999 55789999999999999877642 332 2342 588999999999999998885 44
Q ss_pred CchhHhhhcCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEE-ee---cccccCCCcEEEEEEecCccCCccc
Q psy7673 367 HPTLGNLLSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVV-FD---SCCFEQADWTILTVMMGGAWYDTYF 442 (541)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~-~~---s~~~~~~~~~~l~~~~~g~~~~~~~ 442 (541)
++...+++.++.|.++.++++.|+++...+..+.++..... .+..+. +. ....|......+.+...-....+..
T Consensus 290 ~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~ 367 (479)
T PRK07208 290 PPEVRAAAAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDV--KVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLW 367 (479)
T ss_pred CHHHHHHHhCCCcceeEEEEEEecCCCCCCCceEEecCCCC--ccceecccccCCcccCCCCCceEEEEEEEccCCCccc
Confidence 55666778899999999999999876444333444432211 111111 11 1111222222232212111122333
Q ss_pred CCCCHHHHHHHHHHHHHhHcCC--CCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCC--CCCChH
Q psy7673 443 KGQSKEYILDIACRYVHEILDM--PRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSY--DGVGVN 518 (541)
Q Consensus 443 ~~~~~e~~~~~~~~~l~~~~g~--~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~--~g~~v~ 518 (541)
. ++++++++.++++|.++ |. ..++.+..+++|++++|+|++||...+..+++.+. +.+||++||++. ...+++
T Consensus 368 ~-~~deel~~~~~~~L~~l-~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~-~~~~l~laGr~~~~~~~~~d 444 (479)
T PRK07208 368 N-MSDEDLIALAIQELARL-GLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLD-HFPNLHLVGRNGMHRYNNQD 444 (479)
T ss_pred c-CCHHHHHHHHHHHHHHc-CCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHH-hcCCceeeccccccccCChh
Confidence 3 78999999999999996 53 45678899999999999999999999988876443 457999999754 346899
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy7673 519 DVIALSKKAVESIKWQH 535 (541)
Q Consensus 519 ~ai~sg~~aa~~i~~~~ 535 (541)
+|+.||.++|+.|+...
T Consensus 445 ~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 445 HSMLTAMLAVENIIAGE 461 (479)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999986553
No 60
>KOG0742|consensus
Probab=99.82 E-value=1.9e-19 Score=168.87 Aligned_cols=206 Identities=25% Similarity=0.407 Sum_probs=158.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCc-eEEEcCCccccCCC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPC-VIFFDEIDALCPKR 90 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-il~iDe~d~l~~~~ 90 (541)
..+-++||+|||||||||++++-+|...|+.+-.+...+... ...+....+..+|+.++.+..+ +|||||+|.++-.+
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceR 459 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCER 459 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHh
Confidence 457789999999999999999999999999999998877643 2456678899999999876654 67799999999888
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCC
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPM 170 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~ 170 (541)
..+..+...+..++.|+---- .....++++.+||.|..+|.++-+ |++..++|+.|..+||..+|..++.++....
T Consensus 460 nktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~ 535 (630)
T KOG0742|consen 460 NKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKP 535 (630)
T ss_pred chhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCc
Confidence 776666667777777764322 223458999999999999999988 9999999999999999999999998864211
Q ss_pred CCCC--------------------CC----HHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccc
Q psy7673 171 MGED--------------------VD----FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQ 226 (541)
Q Consensus 171 ~~~~--------------------~~----~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (541)
.... .+ ..+.+ +.|+|||+++|..|+-.....+.-+ +.
T Consensus 536 ~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaA--kkTeGfSGREiakLva~vQAavYgs----------------ed 597 (630)
T KOG0742|consen 536 ATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAA--KKTEGFSGREIAKLVASVQAAVYGS----------------ED 597 (630)
T ss_pred CCCCCCchhhHHHhhhhheeeeccchHHHHHHHHH--HhccCCcHHHHHHHHHHHHHHHhcc----------------cc
Confidence 1111 11 22334 7899999999999987766555432 12
Q ss_pred cccCHHHHHHHHHh
Q psy7673 227 VTIGFRHFDIALKR 240 (541)
Q Consensus 227 ~~i~~~d~~~al~~ 240 (541)
.+++..-|++..+.
T Consensus 598 cvLd~~lf~e~v~y 611 (630)
T KOG0742|consen 598 CVLDEALFDERVDY 611 (630)
T ss_pred hhhHHHHHHHHHHH
Confidence 45666666666543
No 61
>KOG0744|consensus
Probab=99.81 E-value=6.9e-20 Score=167.06 Aligned_cols=207 Identities=28% Similarity=0.430 Sum_probs=157.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCccccccccCchHHHHHHHHHHHHh---cCC--ceE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLNMYLGESERAVRQCFQRARN---SQP--CVI 78 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~--~il 78 (541)
..++-+|++||||||||++|+++|+.+ ...++++|+..+++++++++.+.+..+|..... ... ..+
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 456679999999999999999999988 356899999999999999999999999887753 222 356
Q ss_pred EEcCCccccCCCCCC---CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHH
Q psy7673 79 FFDEIDALCPKRSSL---GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDR 155 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r 155 (541)
+|||++.|...|... .+....-++.++++.++|.+...+++++++|+|-.+.+|.++.+ |-+-..++.+|+.+.+
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai 332 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAI 332 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHH
Confidence 699999998776332 23444578999999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHhcCCCC--CCC--------CCCC-----HHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCC
Q psy7673 156 KEILLALTKQGKDP--MMG--------EDVD-----FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAG 220 (541)
Q Consensus 156 ~~il~~~~~~~~~~--~~~--------~~~~-----~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~ 220 (541)
.+|++..++..-.. ... ..+. ...+. ...+.|.|+|.|+.|=-.|....
T Consensus 333 ~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~-~~~~~gLSGRtlrkLP~Laha~y--------------- 396 (423)
T KOG0744|consen 333 YEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILI-ELSTVGLSGRTLRKLPLLAHAEY--------------- 396 (423)
T ss_pred HHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHH-HHhhcCCccchHhhhhHHHHHhc---------------
Confidence 99999987752110 000 0111 11111 11357888888887744443222
Q ss_pred CCCccccccCHHHHHHHHHh
Q psy7673 221 IDDTEQVTIGFRHFDIALKR 240 (541)
Q Consensus 221 ~~~~~~~~i~~~d~~~al~~ 240 (541)
....+++.++|..|+..
T Consensus 397 ---~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 397 ---FRTFTVDLSNFLLALLE 413 (423)
T ss_pred ---cCCCccChHHHHHHHHH
Confidence 12256889999888654
No 62
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=1.3e-18 Score=165.89 Aligned_cols=208 Identities=17% Similarity=0.232 Sum_probs=147.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA-------GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~-------~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l 86 (541)
++.+++|+||||||||++|+++++.+ ..+++++++.++.+.+.+++......++..+. ++||||||+|.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l 134 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYL 134 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc---CCEEEEEccchh
Confidence 34569999999999999999999876 23689999999988888888777777777653 479999999999
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCCHHHHHHHHHH
Q psy7673 87 CPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPNEQDRKEILLA 161 (541)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~ 161 (541)
...+. ........++.|+..++.. ..+++||++++... .++|++++ ||...|.|++|+.+++.+|++.
T Consensus 135 ~~~~~---~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~ 207 (287)
T CHL00181 135 YKPDN---ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKI 207 (287)
T ss_pred ccCCC---ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHH
Confidence 65422 2234467778888888753 34567777776422 35689998 9999999999999999999999
Q ss_pred HHhcCCCCCCCCCCC---HHHHHhhhhcCCCC-HHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 162 LTKQGKDPMMGEDVD---FDKIAADERCEGFS-GADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 162 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~-~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
++....... .++.. ...+........|. +|+++++++++...-..|....- .......+...|+.+|+.+
T Consensus 208 ~l~~~~~~l-~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~----~~~~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 208 MLEEQQYQL-TPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESG----GRVLTKADLVTIEAEDILK 281 (287)
T ss_pred HHHHhcCCC-ChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCC----CCCCCHHHHhCCCHHHHhH
Confidence 998754322 22211 11112111234455 89999999999888888876541 1111222345566777654
No 63
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=1.5e-18 Score=164.88 Aligned_cols=185 Identities=18% Similarity=0.292 Sum_probs=135.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA-------GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~-------~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l 86 (541)
...+++|+||||||||++|+.+++.+ ..++++++|+++.+.+.++....+..+|..+. ++||||||+|.|
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L 117 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSL 117 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhh
Confidence 34579999999999999999999875 34788999999999999998888888887764 479999999999
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCCHHHHHHHHHH
Q psy7673 87 CPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPNEQDRKEILLA 161 (541)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~ 161 (541)
.... +.......++.|+..++.. ..++++|+++...+ .++|++++ ||...|.|+.++.+++.+|++.
T Consensus 118 ~~~~----~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~ 189 (261)
T TIGR02881 118 ARGG----EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAER 189 (261)
T ss_pred ccCC----ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHH
Confidence 6421 2223456677888888764 33456666654332 36889998 9998999999999999999999
Q ss_pred HHhcCCCCCCCCCCCHHHHHh--------hhhcCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy7673 162 LTKQGKDPMMGEDVDFDKIAA--------DERCEGFSGADLEQLVKEAREQAILEIVNS 212 (541)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~--------~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~ 212 (541)
++...... ..++. +..++. .....| ++|.++++++.|......|....
T Consensus 190 ~~~~~~~~-l~~~a-~~~l~~~~~~~~~~~~~~~g-n~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 190 MVKEREYK-LTEEA-KWKLREHLYKVDQLSSREFS-NARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHcCCc-cCHHH-HHHHHHHHHHHHhccCCCCc-hHHHHHHHHHHHHHHHHHHHhcc
Confidence 99864322 22221 222210 011223 57899999999988887776644
No 64
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=1.3e-17 Score=159.40 Aligned_cols=208 Identities=18% Similarity=0.238 Sum_probs=146.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAG-------INFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~-------~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l 86 (541)
+..+++|+||||||||++|+++++.+. .+++++++.++.+.+.+.+...+..+|..+. +++|||||++.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L 133 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYL 133 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc---CcEEEEechhhh
Confidence 445899999999999999999988772 3799999999988888888777777777653 379999999998
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC--C---CCCccccCCCCCCeEEEecCCCHHHHHHHHHH
Q psy7673 87 CPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP--D---IIDPAVMRPGRFDRILFVNLPNEQDRKEILLA 161 (541)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~--~---~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~ 161 (541)
.+.+. ........++.|+..++.. ..+++||++++.. + .++|++++ ||...|+|++++.+++..|++.
T Consensus 134 ~~~~~---~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~ 206 (284)
T TIGR02880 134 YRPDN---ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGL 206 (284)
T ss_pred ccCCC---ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHH
Confidence 64422 2233456778888888743 3567888877643 2 35899999 9999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCHHHHHh----hhhcCCC-CHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 162 LTKQGKDPMMGEDVDFDKIAA----DERCEGF-SGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~----~~~~~g~-~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
++.+.... +.++ ....+.. ....+.+ ++|.++++++++...-..|....- .......+...|+.+|+.+
T Consensus 207 ~l~~~~~~-l~~~-a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~~----~~~~~~~~~~~~~~~d~~~ 280 (284)
T TIGR02880 207 MLKEQQYR-FSAE-AEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCDL----DRVLDKSDLETIDPEDLLA 280 (284)
T ss_pred HHHHhccc-cCHH-HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcCc----CCCCCHHHHhCCCHHHHhh
Confidence 99875421 1111 1222220 0111222 489999999999888888876541 1111223445577777654
Q ss_pred H
Q psy7673 237 A 237 (541)
Q Consensus 237 a 237 (541)
+
T Consensus 281 ~ 281 (284)
T TIGR02880 281 S 281 (284)
T ss_pred c
Confidence 3
No 65
>PLN02612 phytoene desaturase
Probab=99.76 E-value=1.9e-17 Score=174.00 Aligned_cols=225 Identities=18% Similarity=0.236 Sum_probs=149.7
Q ss_pred cccH-HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc--EEEEecCceeEeeCEEEEcCChhHHHhhhcccC--chhHh
Q psy7673 299 EGGL-QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG--VKVTLNNDQHIEANHVVSALPAPKLGMLLHKQH--PTLGN 372 (541)
Q Consensus 299 ~~G~-~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~--~~~~~ 372 (541)
.|++ ..+.++|++.+ ..|++|++|++|++|..++++ +.|.+.+|+.+.||+||+|+|++.+.+++++.. .+..+
T Consensus 303 ~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~ 382 (567)
T PLN02612 303 DGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFK 382 (567)
T ss_pred cCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHH
Confidence 4444 67888888887 567899999999999986555 346667888899999999999999999887532 24556
Q ss_pred hhcCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeec--cccc--CCCcEEEEEEecCccCCcccCCCCHH
Q psy7673 373 LLSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDS--CCFE--QADWTILTVMMGGAWYDTYFKGQSKE 448 (541)
Q Consensus 373 ~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s--~~~~--~~~~~~l~~~~~g~~~~~~~~~~~~e 448 (541)
.++++.+.++.+++++|+++++.... ++++. ... ...++++. ..+. +.+..++.+.++ .+++|.. ++++
T Consensus 383 ~l~~l~~~~v~~v~l~~dr~~~~~~~-~~~~~-~~~--~~~~~~d~S~~~~~~~~~~~~ll~~~~~--~a~~~~~-~sde 455 (567)
T PLN02612 383 KLDKLVGVPVINVHIWFDRKLKNTYD-HLLFS-RSP--LLSVYADMSTTCKEYYDPNKSMLELVFA--PAEEWIS-RSDE 455 (567)
T ss_pred HHHhcCCCCeEEEEEEECcccCCCCC-ceeec-CCC--CceeehhhhhcchhhcCCCCeEEEEEEE--cChhhhc-CCHH
Confidence 66778899999999999987654322 23332 222 22233322 1111 223444454442 3555655 8999
Q ss_pred HHHHHHHHHHHhHcCCCCCC-------ceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCC-C--CChH
Q psy7673 449 YILDIACRYVHEILDMPRTP-------HAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYD-G--VGVN 518 (541)
Q Consensus 449 ~~~~~~~~~l~~~~g~~~~~-------~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~-g--~~v~ 518 (541)
++++.++++|++++|....+ ....+.+.+.++..+.+|...... ...++.+||||||||+. + .+++
T Consensus 456 ei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp----~~~tPi~~l~lAGd~t~~~~~~sme 531 (567)
T PLN02612 456 DIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRP----LQRSPIEGFYLAGDYTKQKYLASME 531 (567)
T ss_pred HHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCc----cccCccCCEEEeecceeCCchhhHH
Confidence 99999999999999864221 122222333333223334321111 12356679999999994 2 5799
Q ss_pred HHHHHHHHHHHHHhhh
Q psy7673 519 DVIALSKKAVESIKWQ 534 (541)
Q Consensus 519 ~ai~sg~~aa~~i~~~ 534 (541)
+|+.||+++|++|+.+
T Consensus 532 GAv~SG~~AA~~I~~~ 547 (567)
T PLN02612 532 GAVLSGKLCAQSIVQD 547 (567)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999654
No 66
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.75 E-value=2.1e-17 Score=170.35 Aligned_cols=227 Identities=15% Similarity=0.192 Sum_probs=151.1
Q ss_pred ccccccHHH-HHHHHHHhc-cCCcEEeccceeeEEEEeC--CcE----EEEecCc---eeEeeCEEEEcCChhHHHhhhc
Q psy7673 296 WSVEGGLQT-IVNTLGEHL-SNKVEVKMDTTCTNLEFLE--KGV----KVTLNND---QHIEANHVVSALPAPKLGMLLH 364 (541)
Q Consensus 296 ~~~~~G~~~-l~~~l~~~l-~~~~~i~~~~~V~~I~~~~--~~~----~v~~~~g---~~~~ad~VI~t~P~~~~~~ll~ 364 (541)
+.+.||+.. +.+.|.+.| +.|++|+++++|++|..++ +++ .|...+| +.+.||+||+|+|++.+++|++
T Consensus 211 ~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 211 RMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLP 290 (474)
T ss_pred eeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCC
Confidence 344566655 445577777 5678999999999998754 333 2234333 5688999999999999999998
Q ss_pred ccC--chhHhhhcCCCCccEEEEEEeeCCCCCCCC------------cc-EEEecCCCCCCceEEEee----cc-cc-cC
Q psy7673 365 KQH--PTLGNLLSSIEHVNVAVINLAYENIPMKQN------------AF-GFLVPPREKLPILGVVFD----SC-CF-EQ 423 (541)
Q Consensus 365 ~~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~------------~~-g~l~~~~~~~~~~~~~~~----s~-~~-~~ 423 (541)
+.. ......+..+.+.+|.+|++.|+++...+. ++ ++++..+.. + .++++ +. .+ +.
T Consensus 291 ~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~ 367 (474)
T TIGR02732 291 QEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADAD--F-SCFADLALTSPDDYYKE 367 (474)
T ss_pred hhhhcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCcc--c-eeeehhhccCHHHHhcc
Confidence 743 234567788999999999999985322211 00 011111110 0 11112 10 12 12
Q ss_pred CCcEEEEEEecCccCCcccCCCCHHHHHHHHHHHHHhHcCCC--CCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhC
Q psy7673 424 ADWTILTVMMGGAWYDTYFKGQSKEYILDIACRYVHEILDMP--RTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTH 501 (541)
Q Consensus 424 ~~~~~l~~~~~g~~~~~~~~~~~~e~~~~~~~~~l~~~~g~~--~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~ 501 (541)
.....+.+.+.. +.++.. ++++++++.++++|+++++.. .++.+..+.+.+++++.+.+|+...++.. .++
T Consensus 368 ~~~~~l~~~~~~--~~~~~~-~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~----~t~ 440 (474)
T TIGR02732 368 GQGSLLQCVLTP--GDPWMP-ESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQ----KTP 440 (474)
T ss_pred CCCeEEEEEEeC--hhhhcC-CCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCC----CCC
Confidence 222333344422 234444 889999999999999999753 34667778999999988889986444332 245
Q ss_pred CCCEEEEcCCCCC---CChHHHHHHHHHHHHHHh
Q psy7673 502 QLPLYLTGSSYDG---VGVNDVIALSKKAVESIK 532 (541)
Q Consensus 502 ~~~l~laG~~~~g---~~v~~ai~sg~~aa~~i~ 532 (541)
.+|||+||||+.. .++|+|++||++||+.||
T Consensus 441 ~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 441 ISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred CCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 6799999999954 689999999999999873
No 67
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.75 E-value=1e-16 Score=165.89 Aligned_cols=218 Identities=18% Similarity=0.254 Sum_probs=148.2
Q ss_pred HHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc-E-EEEecCce-----eEeeCEEEEcCChhHHHhhhcccC--chhH
Q psy7673 302 LQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG-V-KVTLNNDQ-----HIEANHVVSALPAPKLGMLLHKQH--PTLG 371 (541)
Q Consensus 302 ~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~-~-~v~~~~g~-----~~~ad~VI~t~P~~~~~~ll~~~~--~~~~ 371 (541)
++.+.++|++.+ ..|++|++|++|++|.+++++ + .|++.+|+ ++.+|+||+|+|++.+.++|+... ....
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~ 291 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFF 291 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHH
Confidence 567788888877 557899999999999875444 3 35554443 689999999999999999986532 3345
Q ss_pred hhhcCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEee--ccccc--CCCcEEEEEEecCccCCcccCCCCH
Q psy7673 372 NLLSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFD--SCCFE--QADWTILTVMMGGAWYDTYFKGQSK 447 (541)
Q Consensus 372 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~--s~~~~--~~~~~~l~~~~~g~~~~~~~~~~~~ 447 (541)
+.+.++.+.++.++++.|+++.+... +++++... ..++.++ +..++ .++..++.+++++ .+.+.. +++
T Consensus 292 ~~~~~~~~~~~~~v~l~~~~~~~~~~--~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~l~~~~~~~--~~~~~~-~~~ 363 (453)
T TIGR02731 292 QKLNGLEGVPVINVHIWFDRKLTTVD--HLLFSRSP---LLSVYADMSETCKEYADPDKSMLELVFAP--AADWIG-RSD 363 (453)
T ss_pred HHhhcCCCCcEEEEEEEEccccCCCC--ceeeeCCC---cceeecchhhhChhhcCCCCeEEEEEecC--hhhhhc-CCH
Confidence 66777889999999999998665433 34444322 1122222 22122 2234555555532 244444 899
Q ss_pred HHHHHHHHHHHHhHcCCC---CCC---ceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCC---CCChH
Q psy7673 448 EYILDIACRYVHEILDMP---RTP---HAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYD---GVGVN 518 (541)
Q Consensus 448 e~~~~~~~~~l~~~~g~~---~~~---~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~---g~~v~ 518 (541)
|++++.++++|++++|.. .++ .++...+.+++.+.+.+|+.... ..+.++.+||||||+|.. ..+|+
T Consensus 364 ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~----~~~~~p~~~l~~AG~~~a~~~~g~~e 439 (453)
T TIGR02731 364 EEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYR----PHQKTPIPNFFLAGDYTKQKYLASME 439 (453)
T ss_pred HHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhC----ccccCccCCEEEeehhccCcccccHH
Confidence 999999999999999742 123 33444455666655667743222 234456789999999983 23799
Q ss_pred HHHHHHHHHHHHH
Q psy7673 519 DVIALSKKAVESI 531 (541)
Q Consensus 519 ~ai~sg~~aa~~i 531 (541)
+||+||.+||++|
T Consensus 440 gAi~SG~~AA~~v 452 (453)
T TIGR02731 440 GAVLSGKLCAQAI 452 (453)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999986
No 68
>PLN02487 zeta-carotene desaturase
Probab=99.74 E-value=1.4e-16 Score=165.33 Aligned_cols=233 Identities=13% Similarity=0.190 Sum_probs=162.7
Q ss_pred cccccccHHH-HHHHHHHhc-cCCcEEeccceeeEEEEeC--Cc----EEEEe---cCceeEeeCEEEEcCChhHHHhhh
Q psy7673 295 VWSVEGGLQT-IVNTLGEHL-SNKVEVKMDTTCTNLEFLE--KG----VKVTL---NNDQHIEANHVVSALPAPKLGMLL 363 (541)
Q Consensus 295 ~~~~~~G~~~-l~~~l~~~l-~~~~~i~~~~~V~~I~~~~--~~----~~v~~---~~g~~~~ad~VI~t~P~~~~~~ll 363 (541)
++.+.||+.. +.+.+++.| ..|++|+++++|++|..+. ++ +.|+. .+++.+.+|+||+|+|++.+++|+
T Consensus 286 l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 286 LRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLL 365 (569)
T ss_pred eeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhC
Confidence 5677999995 999999999 7789999999999999863 33 34454 344568899999999999999999
Q ss_pred cccCch--hHhhhcCCCCccEEEEEEeeCCCCCCCCc------------cE-EEecCCCCCCceEEE-eec-c-cccCCC
Q psy7673 364 HKQHPT--LGNLLSSIEHVNVAVINLAYENIPMKQNA------------FG-FLVPPREKLPILGVV-FDS-C-CFEQAD 425 (541)
Q Consensus 364 ~~~~~~--~~~~l~~~~~~~~~~v~l~~~~~~~~~~~------------~g-~l~~~~~~~~~~~~~-~~s-~-~~~~~~ 425 (541)
++..+. ....+..+.+.+|++|+|.|+++...+.. +. |+......-.+.+.+ +.+ . .+....
T Consensus 366 p~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~ 445 (569)
T PLN02487 366 PEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGE 445 (569)
T ss_pred CchhhccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCC
Confidence 876332 24567788899999999999864322211 11 110011111111111 011 0 112222
Q ss_pred cEEEEEEecCccCCcccCCCCHHHHHHHHHHHHHhHcCCC--CCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy7673 426 WTILTVMMGGAWYDTYFKGQSKEYILDIACRYVHEILDMP--RTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQL 503 (541)
Q Consensus 426 ~~~l~~~~~g~~~~~~~~~~~~e~~~~~~~~~l~~~~g~~--~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~ 503 (541)
+..+.+.+.+ ++++.. ++++++++.++++|+++++.. .++.+..+.+.++++....+|....++.. .++.+
T Consensus 446 g~~l~~vis~--a~~~~~-~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~----~T~~~ 518 (569)
T PLN02487 446 GSLIQAVLTP--GDPYMP-LSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQ----KTPIS 518 (569)
T ss_pred ceEEEEEEcC--CccccC-CCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCC----CCCCC
Confidence 3566666632 345555 899999999999999999764 34678889999999888888865333332 25677
Q ss_pred CEEEEcCCCC---CCChHHHHHHHHHHHHHHhhh
Q psy7673 504 PLYLTGSSYD---GVGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 504 ~l~laG~~~~---g~~v~~ai~sg~~aa~~i~~~ 534 (541)
|||+||||.. ..++|+|++||.++|+.|+..
T Consensus 519 nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~ 552 (569)
T PLN02487 519 NFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEA 552 (569)
T ss_pred CEEEeCcccccCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999993 357999999999999988654
No 69
>KOG0743|consensus
Probab=99.74 E-value=2.6e-17 Score=158.55 Aligned_cols=176 Identities=23% Similarity=0.325 Sum_probs=133.1
Q ss_pred hcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 9 LFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 9 ~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
..|+.--+|.|||||||||||+++-|+|+.+++.++-++.++... ... ++.++..... .+||+|.|||.=+.
T Consensus 229 rvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~-----n~d-Lr~LL~~t~~--kSIivIEDIDcs~~ 300 (457)
T KOG0743|consen 229 RVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL-----DSD-LRHLLLATPN--KSILLIEDIDCSFD 300 (457)
T ss_pred hcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----cHH-HHHHHHhCCC--CcEEEEeecccccc
Confidence 348889999999999999999999999999999999988776532 222 6666655443 48999999998654
Q ss_pred CCCCCCCC------ChhHHHHHHHHHHhcCCCCCC--CeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHH
Q psy7673 89 KRSSLGDN------NSSMRIVNQLLTEMDGFEGRG--GVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILL 160 (541)
Q Consensus 89 ~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~--~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~ 160 (541)
-+...... ....-.++-|++.+|++.+.+ -.+||.|||.++.|||+|+||||++..|++...+.+.-..+++
T Consensus 301 l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~ 380 (457)
T KOG0743|consen 301 LRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLAS 380 (457)
T ss_pred cccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHH
Confidence 33222111 122346788999999998877 5899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHH
Q psy7673 161 ALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQL 197 (541)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l 197 (541)
.++.... +...+.++..-......+|+|+...
T Consensus 381 nYL~~~~-----~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 381 NYLGIEE-----DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred HhcCCCC-----CcchhHHHHHHhhcCccCHHHHHHH
Confidence 9988632 2233444442123334578777644
No 70
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.73 E-value=6.2e-17 Score=143.51 Aligned_cols=162 Identities=25% Similarity=0.405 Sum_probs=106.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSS 92 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~ 92 (541)
.+..++|||||||+||||+|+.+|++++.++...+...+.. . ..+..++.... ...||||||||.+.
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--~----~dl~~il~~l~--~~~ILFIDEIHRln----- 114 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--A----GDLAAILTNLK--EGDILFIDEIHRLN----- 114 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--C----HHHHHHHHT----TT-EEEECTCCC-------
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--H----HHHHHHHHhcC--CCcEEEEechhhcc-----
Confidence 45678999999999999999999999999999888754321 1 22233333333 34799999999984
Q ss_pred CCCCChhHHHHHHHHHHhcCCC-----C-----------CCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 93 LGDNNSSMRIVNQLLTEMDGFE-----G-----------RGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~~-----~-----------~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
....+.|+..+++.. . -.++.+|++|++...+.+.|++ ||.....+..++.+|..
T Consensus 115 -------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~ 185 (233)
T PF05496_consen 115 -------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELA 185 (233)
T ss_dssp -------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHH
T ss_pred -------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHH
Confidence 334567777777642 1 1358999999999999999999 99988899999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEA 201 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a 201 (541)
+|++......+... ++.....+| +++.| +||-.-+|++++
T Consensus 186 ~Iv~r~a~~l~i~i--~~~~~~~Ia--~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 186 KIVKRSARILNIEI--DEDAAEEIA--RRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp HHHHHCCHCTT-EE---HHHHHHHH--HCTTT-SHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc--CHHHHHHHH--HhcCC-ChHHHHHHHHHH
Confidence 99998777643211 122245556 67777 788777777665
No 71
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.70 E-value=2.4e-16 Score=149.24 Aligned_cols=128 Identities=26% Similarity=0.474 Sum_probs=102.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhc----CCceEEEcCCccc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNS----QPCVIFFDEIDAL 86 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~il~iDe~d~l 86 (541)
......+++|||||||||||+++.+|...+.+|..++... ...+.++.++++++.. +..||||||||.+
T Consensus 44 ~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf 116 (436)
T COG2256 44 EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF 116 (436)
T ss_pred hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc
Confidence 3456678999999999999999999999999999999743 3456788888888543 2479999999999
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC-CC-CCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHh
Q psy7673 87 CPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN-RP-DIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~-~~-~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~ 164 (541)
.... +..|+-.++ ++.+++|++|. +| -.++++|+| |. .++.|++.+.++..+++++.+.
T Consensus 117 nK~Q------------QD~lLp~vE----~G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 117 NKAQ------------QDALLPHVE----NGTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred Chhh------------hhhhhhhhc----CCeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHh
Confidence 6543 347777776 56678888765 34 479999999 87 5899999999999999999444
No 72
>KOG0685|consensus
Probab=99.69 E-value=1.6e-16 Score=153.60 Aligned_cols=233 Identities=13% Similarity=0.142 Sum_probs=167.8
Q ss_pred ccccccHHHHHHHHHHhccCCcEEecc--------ceeeEEEEeC-CcEEEEecCceeEeeCEEEEcCChhHHHh----h
Q psy7673 296 WSVEGGLQTIVNTLGEHLSNKVEVKMD--------TTCTNLEFLE-KGVKVTLNNDQHIEANHVVSALPAPKLGM----L 362 (541)
Q Consensus 296 ~~~~~G~~~l~~~l~~~l~~~~~i~~~--------~~V~~I~~~~-~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----l 362 (541)
...+.|+..+.+-|++.++.+ .+.++ ++|..|.+.+ +.+.|+..||+.+.||+||+|+|+.++++ +
T Consensus 216 ~~~~kGy~~iL~~l~~~~p~~-~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~l 294 (498)
T KOG0685|consen 216 IWNKKGYKRILKLLMAVIPAQ-NIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKL 294 (498)
T ss_pred eechhHHHHHHHHHhccCCCc-chhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhh
Confidence 445778999999999888544 45554 9999999874 56999999999999999999999999987 5
Q ss_pred h-cccCchhHhhhcCCCCccEEEEEEeeCCCCCCCCccEEEecC-CCC-CCceE---------EEeecccccCCCcEEEE
Q psy7673 363 L-HKQHPTLGNLLSSIEHVNVAVINLAYENIPMKQNAFGFLVPP-REK-LPILG---------VVFDSCCFEQADWTILT 430 (541)
Q Consensus 363 l-~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~-~~~-~~~~~---------~~~~s~~~~~~~~~~l~ 430 (541)
+ |++|....+++.++.++.+.+++|.|++++|+.+..++..-. +++ ..+.. +.|....| ...+|.
T Consensus 295 F~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~---~~~vL~ 371 (498)
T KOG0685|consen 295 FVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSW---APNVLL 371 (498)
T ss_pred cCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCc---chhhhh
Confidence 4 778888889999999999999999999999998765543322 222 00100 11221111 224899
Q ss_pred EEecCccCCcccCCCCHHHHHHHHHHHHHhHcCCC--CCCceeEeeec------cCCCCCCCCCHHHH-HHHHHHHH---
Q psy7673 431 VMMGGAWYDTYFKGQSKEYILDIACRYVHEILDMP--RTPHAQHVEIL------KACIPQYTLGHAAR-VKDIQGYI--- 498 (541)
Q Consensus 431 ~~~~g~~~~~~~~~~~~e~~~~~~~~~l~~~~g~~--~~~~~~~~~~w------~~a~p~~~~g~~~~-~~~~~~~l--- 498 (541)
+|+.|.-+... ..+++|++.+.+...|++.++.. +.|....-+.| ++++...++|.... .......+
T Consensus 372 gWiaG~~~~~m-e~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~ 450 (498)
T KOG0685|consen 372 GWIAGREARHM-ETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLT 450 (498)
T ss_pred eeccCCcceeh-hhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCcc
Confidence 99988766644 45999999999999999999854 34544445667 45555455553221 11221111
Q ss_pred -hhCCCCEEEEcCCCC---CCChHHHHHHHHHHHHHHhh
Q psy7673 499 -DTHQLPLYLTGSSYD---GVGVNDVIALSKKAVESIKW 533 (541)
Q Consensus 499 -~~~~~~l~laG~~~~---g~~v~~ai~sg~~aa~~i~~ 533 (541)
....+.|.|||.+.+ ...+-+|++||.|.|++|+.
T Consensus 451 ~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~ 489 (498)
T KOG0685|consen 451 LVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLE 489 (498)
T ss_pred ccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHH
Confidence 123457999999884 56789999999999999954
No 73
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.69 E-value=4.4e-16 Score=168.37 Aligned_cols=226 Identities=21% Similarity=0.309 Sum_probs=157.2
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCcccc--ccccCchHHHHHHHHHHHHhcCCce
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELL--NMYLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
+..+...+++|+||||||||++++.+|+++ +.+++.+++..+. ..+.|+.+..++.+|+++....+.|
T Consensus 198 L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~I 277 (731)
T TIGR02639 198 LCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAI 277 (731)
T ss_pred HhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeE
Confidence 345667799999999999999999999987 7789999998887 4678999999999999998777899
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCCH
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPNE 152 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~ 152 (541)
|||||+|.|.+.+...+. .....+.|...+. ++.+.+|++|+..+ ..|+++.| ||. .|.++.|+.
T Consensus 278 LfiDEih~l~~~g~~~~~---~~~~~~~L~~~l~----~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~ 347 (731)
T TIGR02639 278 LFIDEIHTIVGAGATSGG---SMDASNLLKPALS----SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSI 347 (731)
T ss_pred EEEecHHHHhccCCCCCc---cHHHHHHHHHHHh----CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCH
Confidence 999999999876543211 1223344444444 46789999999633 57999999 996 799999999
Q ss_pred HHHHHHHHHHHhcCCCCC--CCCCCCHHHHHhhhhcCC-----CCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCcc
Q psy7673 153 QDRKEILLALTKQGKDPM--MGEDVDFDKIAADERCEG-----FSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTE 225 (541)
Q Consensus 153 ~~r~~il~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g-----~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 225 (541)
+++.+||+.....+.... ...+-.+..++ ..+.. +.|+....+++.|......+.. ...
T Consensus 348 ~~~~~il~~~~~~~e~~~~v~i~~~al~~~~--~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~------------~~~ 413 (731)
T TIGR02639 348 EETVKILKGLKEKYEEFHHVKYSDEALEAAV--ELSARYINDRFLPDKAIDVIDEAGASFRLRPK------------AKK 413 (731)
T ss_pred HHHHHHHHHHHHHHHhccCcccCHHHHHHHH--HhhhcccccccCCHHHHHHHHHhhhhhhcCcc------------ccc
Confidence 999999998776532111 11222233333 33333 4466677888877654332110 011
Q ss_pred ccccCHHHHHHHHHhcCC----CCChhhhhhhHHHhhh
Q psy7673 226 QVTIGFRHFDIALKRIKP----SVSKADCKNYESLKQR 259 (541)
Q Consensus 226 ~~~i~~~d~~~al~~~~~----~~s~~~~~~~e~~~~~ 259 (541)
...|+.+|+.++++.+.. ..+.++...+.++...
T Consensus 414 ~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~ 451 (731)
T TIGR02639 414 KANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKN 451 (731)
T ss_pred ccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHH
Confidence 245999999999987742 2233444455554444
No 74
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=1.7e-15 Score=164.72 Aligned_cols=210 Identities=21% Similarity=0.284 Sum_probs=139.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc---------cccCchHHHHHHHHHHHHhcCCceEEEcCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN---------MYLGESERAVRQCFQRARNSQPCVIFFDEI 83 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~il~iDe~ 83 (541)
..+.+++|+||||||||++++++|+.++.+++.+++..+.. .+.+.....+...|..+....| ||+||||
T Consensus 345 ~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEi 423 (775)
T TIGR00763 345 MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEI 423 (775)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEech
Confidence 34457999999999999999999999999999998765421 3455555566667776655544 8999999
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHHhcC-----CC--------CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCC
Q psy7673 84 DALCPKRSSLGDNNSSMRIVNQLLTEMDG-----FE--------GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLP 150 (541)
Q Consensus 84 d~l~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~--------~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p 150 (541)
|.+.+..+. ...+.|++.++. +. +.++++||+|+|..+.+++++++ ||. +|.|+.|
T Consensus 424 dk~~~~~~~--------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~ 492 (775)
T TIGR00763 424 DKIGSSFRG--------DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGY 492 (775)
T ss_pred hhcCCccCC--------CHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCC
Confidence 999864322 123455655542 11 12468999999999999999999 994 8999999
Q ss_pred CHHHHHHHHHHHHhc-----CCCC---CCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCC
Q psy7673 151 NEQDRKEILLALTKQ-----GKDP---MMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGID 222 (541)
Q Consensus 151 ~~~~r~~il~~~~~~-----~~~~---~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 222 (541)
+.+++.+|++.++.. .... ...++..+..++. ..+..+..|+|+..+......+..+....-.. ...
T Consensus 493 ~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~----~~~ 567 (775)
T TIGR00763 493 TEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKAAVKLVEQGEK----KKS 567 (775)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHHHHHHHhccCc----ccC
Confidence 999999999887621 1100 0011112333432 35556677899988888777776554421000 000
Q ss_pred CccccccCHHHHHHHHH
Q psy7673 223 DTEQVTIGFRHFDIALK 239 (541)
Q Consensus 223 ~~~~~~i~~~d~~~al~ 239 (541)
......|+.+++.+.+.
T Consensus 568 ~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 568 EAESVVITPDNLKKYLG 584 (775)
T ss_pred CcccccCCHHHHHHhcC
Confidence 11224577777666654
No 75
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.66 E-value=1.7e-15 Score=136.77 Aligned_cols=206 Identities=27% Similarity=0.344 Sum_probs=147.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRS 91 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~ 91 (541)
.....++||+||||.||||+++.+|++++.++...+...+.. ...+-.++.... ..+||||||||.+.+..
T Consensus 49 ~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK------~gDlaaiLt~Le--~~DVLFIDEIHrl~~~v- 119 (332)
T COG2255 49 GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK------PGDLAAILTNLE--EGDVLFIDEIHRLSPAV- 119 (332)
T ss_pred CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC------hhhHHHHHhcCC--cCCeEEEehhhhcChhH-
Confidence 345678999999999999999999999999988777655421 122333333333 23799999999996442
Q ss_pred CCCCCChhHHHHHHHHHHhcCCC----------------CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHH
Q psy7673 92 SLGDNNSSMRIVNQLLTEMDGFE----------------GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDR 155 (541)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~~----------------~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r 155 (541)
-+.|...++++. +-.++.+|++|.+...+...|+. ||.....+..++.+|.
T Consensus 120 -----------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL 186 (332)
T COG2255 120 -----------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEEL 186 (332)
T ss_pred -----------HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHH
Confidence 123344455431 12458999999999999999998 9999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHH
Q psy7673 156 KEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFD 235 (541)
Q Consensus 156 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 235 (541)
.+|+++.....+... ++....++| +++.| +||-...|+++..-.|.-+.. ..|+.+-..
T Consensus 187 ~~Iv~r~a~~l~i~i--~~~~a~eIA--~rSRG-TPRIAnRLLrRVRDfa~V~~~----------------~~I~~~ia~ 245 (332)
T COG2255 187 EEIVKRSAKILGIEI--DEEAALEIA--RRSRG-TPRIANRLLRRVRDFAQVKGD----------------GDIDRDIAD 245 (332)
T ss_pred HHHHHHHHHHhCCCC--ChHHHHHHH--HhccC-CcHHHHHHHHHHHHHHHHhcC----------------CcccHHHHH
Confidence 999999887643221 222245556 77777 788888898888877765433 248888888
Q ss_pred HHHHhcC---CCCChhhhhhhHHHhhhh
Q psy7673 236 IALKRIK---PSVSKADCKNYESLKQRY 260 (541)
Q Consensus 236 ~al~~~~---~~~s~~~~~~~e~~~~~~ 260 (541)
+||+... .-+..-+.+-+..+.+.|
T Consensus 246 ~aL~~L~Vd~~GLd~~D~k~L~~li~~f 273 (332)
T COG2255 246 KALKMLDVDELGLDEIDRKYLRALIEQF 273 (332)
T ss_pred HHHHHhCcccccccHHHHHHHHHHHHHh
Confidence 9988663 233344555666666676
No 76
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.66 E-value=2.5e-15 Score=147.93 Aligned_cols=189 Identities=25% Similarity=0.328 Sum_probs=133.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRS 91 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~ 91 (541)
..++.+++|+||||||||++++++|++++..+..++...+.. ...+..++... ..+++|||||+|.+....
T Consensus 48 ~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~- 118 (328)
T PRK00080 48 GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTNL--EEGDVLFIDEIHRLSPVV- 118 (328)
T ss_pred CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHhc--ccCCEEEEecHhhcchHH-
Confidence 355678999999999999999999999999887776553321 12233333332 345899999999985321
Q ss_pred CCCCCChhHHHHHHHHHHhcCCC----------------CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHH
Q psy7673 92 SLGDNNSSMRIVNQLLTEMDGFE----------------GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDR 155 (541)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~~----------------~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r 155 (541)
.+.+...+++.. .-.++.+|++|+....+++.+++ ||...+.|+.|+.+++
T Consensus 119 -----------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~ 185 (328)
T PRK00080 119 -----------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEEL 185 (328)
T ss_pred -----------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHH
Confidence 112223333211 11347889999998999999988 9988999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHH
Q psy7673 156 KEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFD 235 (541)
Q Consensus 156 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 235 (541)
.+|++..+...+.. . ++-....++ +.+.| +++.+..+++++...+..+.. ..|+.+++.
T Consensus 186 ~~il~~~~~~~~~~-~-~~~~~~~ia--~~~~G-~pR~a~~~l~~~~~~a~~~~~----------------~~I~~~~v~ 244 (328)
T PRK00080 186 EKIVKRSARILGVE-I-DEEGALEIA--RRSRG-TPRIANRLLRRVRDFAQVKGD----------------GVITKEIAD 244 (328)
T ss_pred HHHHHHHHHHcCCC-c-CHHHHHHHH--HHcCC-CchHHHHHHHHHHHHHHHcCC----------------CCCCHHHHH
Confidence 99999988875422 2 222355666 67777 578888998887766653311 248999999
Q ss_pred HHHHhcCC
Q psy7673 236 IALKRIKP 243 (541)
Q Consensus 236 ~al~~~~~ 243 (541)
++++....
T Consensus 245 ~~l~~~~~ 252 (328)
T PRK00080 245 KALDMLGV 252 (328)
T ss_pred HHHHHhCC
Confidence 99987643
No 77
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.6e-14 Score=148.96 Aligned_cols=225 Identities=49% Similarity=0.759 Sum_probs=193.8
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+..|+.+ +..++.+++++||+|+|||.+++++++. +..+..++..+...++.+..+..+..+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 677788776 8999999999999999999999999999 666688888888899999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
++||+|.+.+.+.. ........+...+...++++. ...+.+++.++.+..+++.+++++||...+.+..|+...+.+|
T Consensus 81 ~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 81 FIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred eechhhhcccCccc-cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 99999999999877 455666788888888888887 4448888899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHH
Q psy7673 159 LLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIAL 238 (541)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 238 (541)
++....... ...+.+...++ ..+.||++.++..++..+...+..+... .......++.+++.+++
T Consensus 159 ~~~~~~~~~---~~~~~~~~~~a--~~~~~~~~~~~~~l~~~~~~~~~~r~~~----------~~~~~~~~~~~~~~~~l 223 (494)
T COG0464 159 LQIHTRLMF---LGPPGTGKTLA--ARTVGKSGADLGALAKEAALRELRRAID----------LVGEYIGVTEDDFEEAL 223 (494)
T ss_pred HHHHHhcCC---CcccccHHHHH--HhcCCccHHHHHHHHHHHHHHHHHhhhc----------cCcccccccHHHHHHHH
Confidence 988877542 33467888888 8999999999999999999999888631 11223458999999999
Q ss_pred HhcCCC
Q psy7673 239 KRIKPS 244 (541)
Q Consensus 239 ~~~~~~ 244 (541)
+.+.++
T Consensus 224 ~~~~~~ 229 (494)
T COG0464 224 KKVLPS 229 (494)
T ss_pred HhcCcc
Confidence 999875
No 78
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=2.7e-15 Score=159.88 Aligned_cols=209 Identities=20% Similarity=0.299 Sum_probs=146.8
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCcccc--ccccCchHHHHHHHHHHHHhcCCce
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELL--NMYLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
+..+...++||+||||||||++++.++..+ +..++.++...+. ..+.++.+..++.++..+....++|
T Consensus 202 L~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~I 281 (758)
T PRK11034 202 LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSI 281 (758)
T ss_pred HhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCE
Confidence 345567889999999999999999999875 4455555555554 3467888899999999988888899
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCCH
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPNE 152 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~ 152 (541)
|||||+|.|.+.+...+ ......+.|...+. +..+.+|++|+.++ ..|++|.| ||. .|.++.|+.
T Consensus 282 LfIDEIh~L~g~g~~~~---g~~d~~nlLkp~L~----~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~ 351 (758)
T PRK11034 282 LFIDEIHTIIGAGAASG---GQVDAANLIKPLLS----SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSI 351 (758)
T ss_pred EEeccHHHHhccCCCCC---cHHHHHHHHHHHHh----CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCH
Confidence 99999999987754211 12223333333333 56789999999764 47999999 996 899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHhh--------hhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCc
Q psy7673 153 QDRKEILLALTKQGKDPMMGEDVDFDKIAAD--------ERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDT 224 (541)
Q Consensus 153 ~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~ 224 (541)
+++..||+.+...+... .++.+...+.. -....+.|.....+++.|...... .... .
T Consensus 352 ~~~~~IL~~~~~~ye~~---h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~--~~~~----------~ 416 (758)
T PRK11034 352 EETVQIINGLKPKYEAH---HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARL--MPVS----------K 416 (758)
T ss_pred HHHHHHHHHHHHHhhhc---cCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhcc--Cccc----------c
Confidence 99999999987764321 23333222221 134456788999999999765422 1100 0
Q ss_pred cccccCHHHHHHHHHhcCC
Q psy7673 225 EQVTIGFRHFDIALKRIKP 243 (541)
Q Consensus 225 ~~~~i~~~d~~~al~~~~~ 243 (541)
....++.+|+.+.++....
T Consensus 417 ~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 417 RKKTVNVADIESVVARIAR 435 (758)
T ss_pred cccccChhhHHHHHHHHhC
Confidence 1135889999999887653
No 79
>KOG0029|consensus
Probab=99.63 E-value=7.5e-15 Score=149.75 Aligned_cols=227 Identities=16% Similarity=0.224 Sum_probs=168.6
Q ss_pred ccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCc-EEEEecCceeEeeCEEEEcCChhHHHh--h--hcccCchh
Q psy7673 296 WSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKG-VKVTLNNDQHIEANHVVSALPAPKLGM--L--LHKQHPTL 370 (541)
Q Consensus 296 ~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~t~P~~~~~~--l--l~~~~~~~ 370 (541)
..+.+|+..++..|++.+ +|+++.+|..|.+.+++ +.+++.++..+.+|+||+|+|.+++.. + .|+++...
T Consensus 212 ~~~~~G~~~v~~~la~~l----~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k 287 (501)
T KOG0029|consen 212 LLMKGGYEPVVNSLAEGL----DIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWK 287 (501)
T ss_pred hHhhCCccHHHhhcCCCc----ceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHH
Confidence 667999999999999866 89999999999997766 345555555599999999999999987 2 36777788
Q ss_pred HhhhcCCCCccEEEEEEeeCCCCCCC--CccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCCCHH
Q psy7673 371 GNLLSSIEHVNVAVINLAYENIPMKQ--NAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQSKE 448 (541)
Q Consensus 371 ~~~l~~~~~~~~~~v~l~~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~~~e 448 (541)
.++++++.++++.+|.+.|++.+|+. +-||.+.......... .|.++. +..+...++.+..|..+..... ++++
T Consensus 288 ~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~~--~f~~~~-~~~~~~~l~~~~~~~~a~~~~~-~~~~ 363 (501)
T KOG0029|consen 288 QEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRGLF--TFYDCK-PVAGHPVLMSVVVGEAAERVET-LSDS 363 (501)
T ss_pred HHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccccchh--hhhhcC-ccCCCCeEEEEehhhhhHHHhc-CCHH
Confidence 89999999999999999999998863 2345544333222221 233322 2234447777776666666655 8999
Q ss_pred HHHHHHHHHHHhHcC--CCCCCceeEeeecc------CCCCCCCCCHHH-HHHHHHHHHhhCCCC-EEEEcCCCC---CC
Q psy7673 449 YILDIACRYVHEILD--MPRTPHAQHVEILK------ACIPQYTLGHAA-RVKDIQGYIDTHQLP-LYLTGSSYD---GV 515 (541)
Q Consensus 449 ~~~~~~~~~l~~~~g--~~~~~~~~~~~~w~------~a~p~~~~g~~~-~~~~~~~~l~~~~~~-l~laG~~~~---g~ 515 (541)
+++..++..|+++|+ ...+|..+.+.+|. ++++.+.++-.. .+..+. .+..+ +||||+++. -.
T Consensus 364 ~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~----~pi~~~~ffage~t~~~~~~ 439 (501)
T KOG0029|consen 364 EIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLA----EPIKNRVFFAGEATSRKYPG 439 (501)
T ss_pred HHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHh----ccccCcEEecchhhcccCCC
Confidence 999999999999999 34678999999993 455555555322 234433 33334 999999883 45
Q ss_pred ChHHHHHHHHHHHHHHhhh
Q psy7673 516 GVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 516 ~v~~ai~sg~~aa~~i~~~ 534 (541)
.|++|+.||.++|..|+..
T Consensus 440 tm~GA~~sG~~~a~~i~~~ 458 (501)
T KOG0029|consen 440 TMHGAYLSGLRAASDILDS 458 (501)
T ss_pred chHHHHHhhHHHHHHHHHH
Confidence 7999999999999988554
No 80
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.63 E-value=1e-14 Score=142.71 Aligned_cols=186 Identities=27% Similarity=0.329 Sum_probs=127.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSS 92 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~ 92 (541)
..+.+++|+||||||||++++++|++++.++..+++..... ...+...+... ..+.+|||||+|.+.+.
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--- 96 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------PGDLAAILTNL--EEGDVLFIDEIHRLSPA--- 96 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------chhHHHHHHhc--ccCCEEEEehHhhhCHH---
Confidence 45678999999999999999999999988877666543211 11122222222 24579999999998533
Q ss_pred CCCCChhHHHHHHHHHHhcCCC----------------CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 93 LGDNNSSMRIVNQLLTEMDGFE----------------GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~~----------------~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
..+.|...+++.. ...++.+|++|+.+..+++.+++ ||...+.|++|+.+++.
T Consensus 97 ---------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~ 165 (305)
T TIGR00635 97 ---------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELA 165 (305)
T ss_pred ---------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHH
Confidence 1223333333211 11347888999988899999998 99888999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
++++..+..... . .++..+..++ +.+.| .++.+..+++.+...+..... ..|+.+++.+
T Consensus 166 ~il~~~~~~~~~-~-~~~~al~~ia--~~~~G-~pR~~~~ll~~~~~~a~~~~~----------------~~it~~~v~~ 224 (305)
T TIGR00635 166 EIVSRSAGLLNV-E-IEPEAALEIA--RRSRG-TPRIANRLLRRVRDFAQVRGQ----------------KIINRDIALK 224 (305)
T ss_pred HHHHHHHHHhCC-C-cCHHHHHHHH--HHhCC-CcchHHHHHHHHHHHHHHcCC----------------CCcCHHHHHH
Confidence 999998886432 1 1222345555 67777 467888888877655432211 2488999999
Q ss_pred HHHhc
Q psy7673 237 ALKRI 241 (541)
Q Consensus 237 al~~~ 241 (541)
++..+
T Consensus 225 ~l~~l 229 (305)
T TIGR00635 225 ALEML 229 (305)
T ss_pred HHHHh
Confidence 98874
No 81
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=2.1e-14 Score=148.43 Aligned_cols=166 Identities=19% Similarity=0.223 Sum_probs=118.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
+.+.+..+||+||+|||||++++.+++.+++. ++++|..+ ......++.+
T Consensus 34 ~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReL 107 (830)
T PRK07003 34 GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAAL 107 (830)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccc------cccHHHHHHH
Confidence 34566778999999999999999999988642 33333221 1112334445
Q ss_pred HHHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
++.+. ..+..|+||||+|.|.. ...+.|++.|++. ..++.||.+||.++.|.+.++| |+
T Consensus 108 Ie~a~~~P~~gr~KVIIIDEah~LT~------------~A~NALLKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC- 170 (830)
T PRK07003 108 LERAVYAPVDARFKVYMIDEVHMLTN------------HAFNAMLKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC- 170 (830)
T ss_pred HHHHHhccccCCceEEEEeChhhCCH------------HHHHHHHHHHHhc--CCCeEEEEEECChhhccchhhh--he-
Confidence 54443 23457999999999842 3467888888853 3467889999999999999998 88
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQ 204 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~ 204 (541)
..|.|..++.++..++|+.++..++.. .++..+..++ +...| +.|+..++++.+...
T Consensus 171 q~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA--~~A~G-smRdALsLLdQAia~ 227 (830)
T PRK07003 171 LQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLA--RAAQG-SMRDALSLTDQAIAY 227 (830)
T ss_pred EEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHHh
Confidence 589999999999999999999875421 1223344555 56667 678888888877643
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.1e-14 Score=145.12 Aligned_cols=164 Identities=17% Similarity=0.220 Sum_probs=117.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQCF 67 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~~ 67 (541)
.+.+..+||+||+|||||++|+.+|+.+++. +++++... ......++.+.
T Consensus 37 ~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~ 110 (484)
T PRK14956 37 GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELR 110 (484)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHH
Confidence 3456679999999999999999999988652 22333211 11122334443
Q ss_pred HHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCe
Q psy7673 68 QRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 68 ~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 143 (541)
..+. .....|++|||+|.|. ...++.|+..+++ ...++++|.+|+.++.+++.+++ |+.
T Consensus 111 e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq- 173 (484)
T PRK14956 111 DNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ- 173 (484)
T ss_pred HHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-
Confidence 3332 2345799999999984 2356788888875 34568888888889999999999 884
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
.+.|..++.++..+.++..+...+. ..++..+..++ +.+.| +.|+..++++.+..
T Consensus 174 ~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia--~~S~G-d~RdAL~lLeq~i~ 228 (484)
T PRK14956 174 DFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIA--KKGDG-SVRDMLSFMEQAIV 228 (484)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHH--HHcCC-hHHHHHHHHHHHHH
Confidence 7899999999999999999987542 12233355566 66666 78898888887653
No 83
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.61 E-value=9.1e-15 Score=149.98 Aligned_cols=192 Identities=18% Similarity=0.260 Sum_probs=130.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPK 89 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~ 89 (541)
...++|+||+|+|||++++++++++ +..++++++.++...+...........|.... ..+.+|+|||+|.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCC
Confidence 3579999999999999999999987 56789999988765543332211112222211 24689999999998644
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCccccCCCCCC--eEEEecCCCHHHHHHHHHHHHh
Q psy7673 90 RSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI---IDPAVMRPGRFD--RILFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~~ 164 (541)
. .....|+..++.+......+||++...|.. +++.+++ ||. ..+.+.+|+.++|..|++..+.
T Consensus 227 ~----------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 227 E----------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred H----------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence 2 122344554444333444466666666554 6688888 885 6899999999999999999998
Q ss_pred cCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 165 QGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
..+ ..+.++ .++.++ ....| +.|+|..+++.....+.... ..|+.+.+.+++...
T Consensus 295 ~~~-~~l~~e-~l~~ia--~~~~~-~~R~l~~~l~~l~~~~~~~~-----------------~~it~~~~~~~l~~~ 349 (450)
T PRK00149 295 EEG-IDLPDE-VLEFIA--KNITS-NVRELEGALNRLIAYASLTG-----------------KPITLELAKEALKDL 349 (450)
T ss_pred HcC-CCCCHH-HHHHHH--cCcCC-CHHHHHHHHHHHHHHHHhhC-----------------CCCCHHHHHHHHHHh
Confidence 642 122333 356666 55555 78888888888766554221 248899999999876
No 84
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.60 E-value=4.1e-14 Score=143.75 Aligned_cols=202 Identities=19% Similarity=0.229 Sum_probs=132.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCcccccc----------ccC--------chHHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNM----------YLG--------ESERAVRQCFQR 69 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~----------~~~--------~~~~~~~~~~~~ 69 (541)
..+.+++|+||||||||++++.+++++ +..+++++|....+. ..+ .....+..+...
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY 132 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 456779999999999999999999887 578999999754221 111 112333444444
Q ss_pred HHh-cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCccccCCCCCC-eE
Q psy7673 70 ARN-SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD---IIDPAVMRPGRFD-RI 144 (541)
Q Consensus 70 ~~~-~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~---~l~~~l~~~~r~~-~~ 144 (541)
... ..+.||+|||+|.+.... ....+..|++.++... ..++.+|+++|..+ .+++.+.+ |+. ..
T Consensus 133 l~~~~~~~viviDE~d~l~~~~--------~~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~ 201 (394)
T PRK00411 133 LDERDRVLIVALDDINYLFEKE--------GNDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEE 201 (394)
T ss_pred HHhcCCEEEEEECCHhHhhccC--------CchHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcce
Confidence 333 345789999999996221 1235666666665443 23678888888653 46677766 553 57
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCC--CCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCC
Q psy7673 145 LFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEG--FSGADLEQLVKEAREQAILEIVNSVENDDQAGID 222 (541)
Q Consensus 145 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 222 (541)
|.|++++.++..+|++..+.........++..++.++ +.+.+ ...+.+..++..|...|..+..
T Consensus 202 i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~--~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~------------ 267 (394)
T PRK00411 202 IYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIA--DLTAREHGDARVAIDLLRRAGLIAEREGS------------ 267 (394)
T ss_pred eecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHH--HHHHHhcCcHHHHHHHHHHHHHHHHHcCC------------
Confidence 8999999999999999988653211122222344555 44422 1356667888888777764432
Q ss_pred CccccccCHHHHHHHHHhcCC
Q psy7673 223 DTEQVTIGFRHFDIALKRIKP 243 (541)
Q Consensus 223 ~~~~~~i~~~d~~~al~~~~~ 243 (541)
..|+.+|+.+|++.+.+
T Consensus 268 ----~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 268 ----RKVTEEDVRKAYEKSEI 284 (394)
T ss_pred ----CCcCHHHHHHHHHHHHH
Confidence 24999999999998743
No 85
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.60 E-value=1.3e-14 Score=147.15 Aligned_cols=191 Identities=19% Similarity=0.279 Sum_probs=128.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHH-HHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESER-AVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
...++|+||+|+|||++++++++++ +..++++++.++...+...... .+........ ..++|+|||+|.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4579999999999999999999987 5789999998876543222111 1111222222 357999999999864
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCccccCCCCCC--eEEEecCCCHHHHHHHHHHHH
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI---IDPAVMRPGRFD--RILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~ 163 (541)
+. .....|+..++........+||+++..|.. +++.+++ ||. ..+.|++|+.++|..|++..+
T Consensus 214 ~~----------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 214 KE----------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred CH----------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 32 122344554444333334466666555543 5688888 885 579999999999999999999
Q ss_pred hcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 164 KQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
...+. .+. +-.++.++ ....+ +.++|..++++....+.... ..|+.+.++++|...
T Consensus 282 ~~~~~-~l~-~e~l~~ia--~~~~~-~~r~l~~~l~~l~~~a~~~~-----------------~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 282 EEEGL-ELP-DEVLEFIA--KNIRS-NVRELEGALNRLLAYASLTG-----------------KPITLELAKEALKDL 337 (405)
T ss_pred HHcCC-CCC-HHHHHHHH--HhcCC-CHHHHHHHHHHHHHHHHHhC-----------------CCCCHHHHHHHHHHh
Confidence 87532 222 23356666 55555 78899999888866654221 248888888888765
No 86
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=9.8e-15 Score=148.93 Aligned_cols=165 Identities=20% Similarity=0.225 Sum_probs=117.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----------------------------cEEEEeCccccccccCchHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGI-----------------------------NFISVKGPELLNMYLGESER 61 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~-----------------------------~~~~i~~~~l~~~~~~~~~~ 61 (541)
..+.+..+||+||+|+|||++++.+++.+++ .+++++..+ .....
T Consensus 34 ~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVD 107 (700)
T PRK12323 34 QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVD 107 (700)
T ss_pred hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc------cCCHH
Confidence 3456677899999999999999999999865 122222221 11123
Q ss_pred HHHHHHHHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccC
Q psy7673 62 AVRQCFQRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMR 137 (541)
Q Consensus 62 ~~~~~~~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~ 137 (541)
.++.+.+.+. ..+..|+||||+|.|.. ...+.|++.|++ ...+++||.+|+.++.|.+.++|
T Consensus 108 dIReLie~~~~~P~~gr~KViIIDEah~Ls~------------~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 108 EMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN------------HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred HHHHHHHHHHhchhcCCceEEEEEChHhcCH------------HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH
Confidence 3444444432 23457999999999842 356789998885 34567888889999999999998
Q ss_pred CCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 138 PGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 138 ~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
|+ ..+.|+.++.++..+.|+.++...+.. .++..+..++ +.+.| +.++..++++.+..
T Consensus 174 --RC-q~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA--~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 174 --RC-LQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLA--QAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred --HH-HhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHH
Confidence 88 589999999999999999998864311 1112234445 55666 78899998887654
No 87
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.59 E-value=7.4e-14 Score=140.42 Aligned_cols=202 Identities=21% Similarity=0.221 Sum_probs=130.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEeCcccccc----------cc--C--------chHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG---------INFISVKGPELLNM----------YL--G--------ESERAV 63 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~---------~~~~~i~~~~l~~~----------~~--~--------~~~~~~ 63 (541)
..+.+++|+||||||||++++.+++++. ..+++++|....+. .. + .....+
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 4567899999999999999999998762 57899999754321 00 0 112233
Q ss_pred HHHHHHHHh-cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcC-CCCCCCeEEEEecCCCC---CCCccccCC
Q psy7673 64 RQCFQRARN-SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDG-FEGRGGVFLMAATNRPD---IIDPAVMRP 138 (541)
Q Consensus 64 ~~~~~~~~~-~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~vi~t~~~~~---~l~~~l~~~ 138 (541)
..++..... ..+.||+|||+|.+.... ...+..|++..+. .....++.+|+++|.++ .+++.+.+
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s- 187 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS- 187 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc-
Confidence 444444432 345789999999997221 1234455544211 12235688899998775 47777777
Q ss_pred CCCC-eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHH-hhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy7673 139 GRFD-RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIA-ADERCEGFSGADLEQLVKEAREQAILEIVNSVEND 216 (541)
Q Consensus 139 ~r~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~ 216 (541)
||. ..+.|++++.++..+|++..+.........++..+..++ ....+.| .+|.+.++|+.|...|..+..
T Consensus 188 -~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~------ 259 (365)
T TIGR02928 188 -SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGA------ 259 (365)
T ss_pred -cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC------
Confidence 774 679999999999999999998732111111111122222 1133446 467777888888877765432
Q ss_pred CcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 217 DQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 217 ~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
..|+.+|+.+|++.+.
T Consensus 260 ----------~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 260 ----------ERVTEDHVEKAQEKIE 275 (365)
T ss_pred ----------CCCCHHHHHHHHHHHH
Confidence 2499999999998774
No 88
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.58 E-value=3.6e-14 Score=154.43 Aligned_cols=184 Identities=23% Similarity=0.295 Sum_probs=132.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCccccc--cccCchHHHHHHHHHHHHh-cCCce
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELLN--MYLGESERAVRQCFQRARN-SQPCV 77 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~-~~~~i 77 (541)
..+...+++|+||||||||++++.+++.+ +.+++.++.+.+.. .+.++.+..++.++.++.. ..+.|
T Consensus 204 ~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~I 283 (852)
T TIGR03345 204 LRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPII 283 (852)
T ss_pred hcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeE
Confidence 45667789999999999999999999987 35678888877653 5788899999999999865 35789
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCCH
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPNE 152 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~ 152 (541)
|||||+|.+.+.+...+.. +..+.|+..+. ++.+.+|++|+..+ .+|++|.| ||. .|.++.|+.
T Consensus 284 LfIDEih~l~~~g~~~~~~----d~~n~Lkp~l~----~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~ 352 (852)
T TIGR03345 284 LFIDEAHTLIGAGGQAGQG----DAANLLKPALA----RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDE 352 (852)
T ss_pred EEEeChHHhccCCCccccc----cHHHHhhHHhh----CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCH
Confidence 9999999998765432211 12233444443 56789999998643 48999999 995 899999999
Q ss_pred HHHHHHHHHHHhcCCCCC--CCCCCCHHHHHhhhhcCC-----CCHHHHHHHHHHHHHHHHH
Q psy7673 153 QDRKEILLALTKQGKDPM--MGEDVDFDKIAADERCEG-----FSGADLEQLVKEAREQAIL 207 (541)
Q Consensus 153 ~~r~~il~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g-----~~~~dl~~l~~~a~~~a~~ 207 (541)
+++..||+.+...+.... ...+..+..++ ..+.+ +-|+....|++.|......
T Consensus 353 ~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~--~ls~ryi~~r~LPDKAIdlldea~a~~~~ 412 (852)
T TIGR03345 353 ETAIRMLRGLAPVLEKHHGVLILDEAVVAAV--ELSHRYIPGRQLPDKAVSLLDTACARVAL 412 (852)
T ss_pred HHHHHHHHHHHHhhhhcCCCeeCHHHHHHHH--HHcccccccccCccHHHHHHHHHHHHHHH
Confidence 999999877766532111 11222233333 44444 4567788889988665543
No 89
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3e-14 Score=144.26 Aligned_cols=140 Identities=26% Similarity=0.392 Sum_probs=113.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc---------cccCchHHHHHHHHHHHHhcCCceEEEcC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN---------MYLGESERAVRQCFQRARNSQPCVIFFDE 82 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~il~iDe 82 (541)
.-.+.-++|+||||+|||++++.+|+.++..|+.+....+.. .|.|..-.++-+.+..+....| +++|||
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDE 425 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDE 425 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeec
Confidence 344567889999999999999999999999999998765543 3778888888888888776665 899999
Q ss_pred CccccCCCCCCCCCChhHHHHHHHHHHhcCCC-------------CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecC
Q psy7673 83 IDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-------------GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNL 149 (541)
Q Consensus 83 ~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------------~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~ 149 (541)
||.+..+-++ +-.++|++.||--. .-++|+||+|+|..+.+|..|++ |+. +|++.-
T Consensus 426 IDKm~ss~rG--------DPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsg 494 (782)
T COG0466 426 IDKMGSSFRG--------DPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSG 494 (782)
T ss_pred hhhccCCCCC--------ChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecC
Confidence 9999766443 22346676666311 22469999999999999999999 995 999999
Q ss_pred CCHHHHHHHHHHHH
Q psy7673 150 PNEQDRKEILLALT 163 (541)
Q Consensus 150 p~~~~r~~il~~~~ 163 (541)
++.+|..+|.+.++
T Consensus 495 Yt~~EKl~IAk~~L 508 (782)
T COG0466 495 YTEDEKLEIAKRHL 508 (782)
T ss_pred CChHHHHHHHHHhc
Confidence 99999999998764
No 90
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=1.8e-14 Score=146.18 Aligned_cols=193 Identities=16% Similarity=0.260 Sum_probs=128.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPK 89 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~ 89 (541)
...++||||+|+|||+|++++++++ +..++++++.++...+.......-..-|....+..+.+|+|||++.+.++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 3569999999999999999999986 46889999988765543222111111233222335789999999988643
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCccccCCCCCC--eEEEecCCCHHHHHHHHHHHHh
Q psy7673 90 RSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI---IDPAVMRPGRFD--RILFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~~ 164 (541)
.. ....++..++.+......+|+++.+.|.. +.+.+.+ ||. ..+.+.+|+.++|..|++..+.
T Consensus 210 ~~----------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TG----------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HH----------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 21 12334444444333444566666666654 5567777 774 6789999999999999999988
Q ss_pred cCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 165 QGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
..+. .+.++ .++.++ ....+ +.|+|..++.+....+.... ..|+.+.+.++|+.+
T Consensus 278 ~~~~-~l~~e-v~~~Ia--~~~~~-~~R~L~g~l~~l~~~~~~~~-----------------~~it~~~a~~~L~~~ 332 (440)
T PRK14088 278 IEHG-ELPEE-VLNFVA--ENVDD-NLRRLRGAIIKLLVYKETTG-----------------EEVDLKEAILLLKDF 332 (440)
T ss_pred hcCC-CCCHH-HHHHHH--hcccc-CHHHHHHHHHHHHHHHHHhC-----------------CCCCHHHHHHHHHHH
Confidence 6432 23333 356666 55555 67888888887755553321 248888888888765
No 91
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.57 E-value=4.1e-14 Score=127.46 Aligned_cols=170 Identities=21% Similarity=0.318 Sum_probs=120.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHh-cCCceEEEcCCccc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARN-SQPCVIFFDEIDAL 86 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~il~iDe~d~l 86 (541)
.+.+..++||+|++|||||++++++.+++ +++++++...++. .+..+++.++. ..+-|||+||+- +
T Consensus 48 ~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~---------~l~~l~~~l~~~~~kFIlf~DDLs-F 117 (249)
T PF05673_consen 48 QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG---------DLPELLDLLRDRPYKFILFCDDLS-F 117 (249)
T ss_pred cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc---------cHHHHHHHHhcCCCCEEEEecCCC-C
Confidence 45688999999999999999999999887 8899999877763 33445555443 234699999863 1
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhcCC--CCCCCeEEEEecCCCCCCCccccC---------------------CCCCCe
Q psy7673 87 CPKRSSLGDNNSSMRIVNQLLTEMDGF--EGRGGVFLMAATNRPDIIDPAVMR---------------------PGRFDR 143 (541)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~vi~t~~~~~~l~~~l~~---------------------~~r~~~ 143 (541)
.........|...|++- ..+.|++|.+|+|+.+.+++.+.. +.||..
T Consensus 118 ----------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL 187 (249)
T PF05673_consen 118 ----------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGL 187 (249)
T ss_pred ----------CCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCc
Confidence 11112235666666654 346689999999976554432211 359999
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKE 200 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~ 200 (541)
.|.|.+|+.++..+|+++++..++.....+++....+..+....|.|+|-..+.++.
T Consensus 188 ~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 188 WLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999999998765433333333444445556678899888877664
No 92
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.56 E-value=7.4e-14 Score=144.91 Aligned_cols=198 Identities=17% Similarity=0.213 Sum_probs=125.8
Q ss_pred hcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCccccccc-----------------cCchHH
Q psy7673 9 LFGKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELLNMY-----------------LGESER 61 (541)
Q Consensus 9 ~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~~~~-----------------~~~~~~ 61 (541)
+.|..++..++|+|+||||||++++.+.+++ .+.+++|||..+...+ ......
T Consensus 775 IkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~e 854 (1164)
T PTZ00112 775 IKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFK 854 (1164)
T ss_pred HhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHH
Confidence 3354455556799999999999999998776 2678999996543221 011233
Q ss_pred HHHHHHHHHHh--cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC---CCCCCcccc
Q psy7673 62 AVRQCFQRARN--SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR---PDIIDPAVM 136 (541)
Q Consensus 62 ~~~~~~~~~~~--~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~---~~~l~~~l~ 136 (541)
.+..+|..... ....||+|||||.|.... ..++..|++... .....+.||+++|. ++.+++.++
T Consensus 855 vLerLF~~L~k~~r~v~IIILDEID~L~kK~---------QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLR 923 (1164)
T PTZ00112 855 ILDRLFNQNKKDNRNVSILIIDEIDYLITKT---------QKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCR 923 (1164)
T ss_pred HHHHHHhhhhcccccceEEEeehHhhhCccH---------HHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhh
Confidence 45556655422 234699999999997531 244555555433 23456899999985 445778888
Q ss_pred CCCCCC-eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCC--CHHHHHHHHHHHHHHHHHHHhhcc
Q psy7673 137 RPGRFD-RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGF--SGADLEQLVKEAREQAILEIVNSV 213 (541)
Q Consensus 137 ~~~r~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~dl~~l~~~a~~~a~~~~~~~~ 213 (541)
+ ||. .+|.|++++.+++.+||+..+.... ...++-.+..+| +..+.. .+|....+|+.|...+
T Consensus 924 S--RLg~eeIvF~PYTaEQL~dILk~RAe~A~--gVLdDdAIELIA--rkVAq~SGDARKALDILRrAgEik-------- 989 (1164)
T PTZ00112 924 S--RLAFGRLVFSPYKGDEIEKIIKERLENCK--EIIDHTAIQLCA--RKVANVSGDIRKALQICRKAFENK-------- 989 (1164)
T ss_pred h--ccccccccCCCCCHHHHHHHHHHHHHhCC--CCCCHHHHHHHH--HhhhhcCCHHHHHHHHHHHHHhhc--------
Confidence 7 665 3588999999999999999998631 112222244444 333322 2344444555554321
Q ss_pred cCCCcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 214 ENDDQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
....|+.+|+.+|++.+.
T Consensus 990 -----------egskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 990 -----------RGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred -----------CCCccCHHHHHHHHHHHH
Confidence 012589999999998763
No 93
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=5.2e-14 Score=144.18 Aligned_cols=193 Identities=20% Similarity=0.284 Sum_probs=128.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
+.++|||++|+|||+|++++++++ +..++++++.++..++...........|.+. ....++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 459999999999999999999977 5789999998887665433322222223322 2245899999999986442
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCccccCCCCC--CeEEEecCCCHHHHHHHHHHHHhc
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD---IIDPAVMRPGRF--DRILFVNLPNEQDRKEILLALTKQ 165 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~---~l~~~l~~~~r~--~~~i~~~~p~~~~r~~il~~~~~~ 165 (541)
. ....|+..++.+....+.+||++...+. .+++.|++ || ...+.+..|+.+.|..||+.++..
T Consensus 394 ~----------tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 S----------TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred H----------HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 1 1234444444443344445554444443 46788988 77 477899999999999999999887
Q ss_pred CCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCC
Q psy7673 166 GKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKP 243 (541)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 243 (541)
.+. .+.++ .++.|+ ....+ +.+.|..++++....+.... ..|+.+.+++.|+.+.+
T Consensus 462 r~l-~l~~e-Vi~yLa--~r~~r-nvR~LegaL~rL~a~a~~~~-----------------~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 462 EQL-NAPPE-VLEFIA--SRISR-NIRELEGALIRVTAFASLNR-----------------QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred cCC-CCCHH-HHHHHH--HhccC-CHHHHHHHHHHHHHHHHhhC-----------------CCCCHHHHHHHHHHhhc
Confidence 542 22222 355555 44444 67888888887755444321 24888888888876643
No 94
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.4e-14 Score=143.41 Aligned_cols=165 Identities=20% Similarity=0.228 Sum_probs=115.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGI------------------------NFISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~------------------------~~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
+.+.+..+||+||+|+|||++|+++|+.+++ .+++++.++- .....++.+
T Consensus 33 ~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIRel 106 (702)
T PRK14960 33 RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTREL 106 (702)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHH
Confidence 3456778999999999999999999999865 2334443221 122334444
Q ss_pred HHHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
...+. ..+..|++|||+|.|.. ...+.|++.++.. ..++.||.+|+.+..+++.+++ |+
T Consensus 107 i~~~~y~P~~gk~KV~IIDEVh~LS~------------~A~NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC- 169 (702)
T PRK14960 107 LDNVPYAPTQGRFKVYLIDEVHMLST------------HSFNALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC- 169 (702)
T ss_pred HHHHhhhhhcCCcEEEEEechHhcCH------------HHHHHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-
Confidence 44432 23457999999999842 3456888888853 3456777778888888888887 88
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
..+.|..++.++..+.++.++...+.. .++..+..++ +.+.| +.|++.++++.+..
T Consensus 170 q~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA--~~S~G-dLRdALnLLDQaIa 225 (702)
T PRK14960 170 LQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIA--ESAQG-SLRDALSLTDQAIA 225 (702)
T ss_pred heeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHH
Confidence 489999999999999999999875421 2222344555 55555 78888888877653
No 95
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=5.1e-14 Score=142.37 Aligned_cols=195 Identities=14% Similarity=0.237 Sum_probs=125.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
..+.++||||+|+|||+|++++++++ +.+++++++.++...+...........|.... ...++|+|||++.+.++.
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~ 218 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG 218 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh
Confidence 34679999999999999999999877 68899999877654432221111112233322 346899999999986432
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCccccCCCCCC--eEEEecCCCHHHHHHHHHHHHhc
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD---IIDPAVMRPGRFD--RILFVNLPNEQDRKEILLALTKQ 165 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~---~l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~~~ 165 (541)
. ....++..++.+....+.+|++++..|. .+++.+++ ||. ..+.+.+|+.++|..|++..+..
T Consensus 219 ~----------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 219 A----------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred h----------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1 1223444433322233445555555554 46788888 885 78999999999999999999987
Q ss_pred CCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHH-HHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 166 GKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQ-AILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~-a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
.+. .+.++ .++.++ ....+ +.+.|...++..... +..+... .+|+.+++++++...
T Consensus 287 ~~~-~l~~e-vl~~la--~~~~~-dir~L~g~l~~l~~~~a~~~~~~---------------~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 287 LSI-RIEET-ALDFLI--EALSS-NVKSLLHALTLLAKRVAYKKLSH---------------QLLYVDDIKALLHDV 343 (445)
T ss_pred cCC-CCCHH-HHHHHH--HhcCC-CHHHHHHHHHHHHHHHHHHHhhC---------------CCCCHHHHHHHHHHh
Confidence 532 22222 244445 33343 567777777766432 3333221 358999999999865
No 96
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.9e-13 Score=134.27 Aligned_cols=210 Identities=22% Similarity=0.291 Sum_probs=145.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEeCccccccc---------------cCc-hHHHHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAG-----INFISVKGPELLNMY---------------LGE-SERAVRQCFQRA 70 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~-----~~~~~i~~~~l~~~~---------------~~~-~~~~~~~~~~~~ 70 (541)
...|.+++++|+||||||.+++.+++++. ..+++|||....+.+ .|. ....+..+++..
T Consensus 39 ~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~ 118 (366)
T COG1474 39 GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNL 118 (366)
T ss_pred CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHH
Confidence 35556799999999999999999999883 338999997654321 111 122233333333
Q ss_pred Hh-cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCccccCCCCCC-eEE
Q psy7673 71 RN-SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD---IIDPAVMRPGRFD-RIL 145 (541)
Q Consensus 71 ~~-~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~---~l~~~l~~~~r~~-~~i 145 (541)
.. ....||+|||+|.|....+ ..+..|+..-... ..++.+|+.+|..+ .+++.+.+ ++. ..|
T Consensus 119 ~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I 185 (366)
T COG1474 119 SKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEI 185 (366)
T ss_pred HhcCCeEEEEEcchhhhccccc---------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCccee
Confidence 33 3456888999999976532 5666777665544 55689999999763 68888887 554 569
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHH-hhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCc
Q psy7673 146 FVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIA-ADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDT 224 (541)
Q Consensus 146 ~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~ 224 (541)
.|++++.+|...|++............++--+..++ .+....| .+|-...+++.|...|..+....
T Consensus 186 ~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~------------ 252 (366)
T COG1474 186 VFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRK------------ 252 (366)
T ss_pred eeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCC------------
Confidence 999999999999999998864333333333344444 1233444 67888899999999998776654
Q ss_pred cccccCHHHHHHHHHhcCCCCChhhhh
Q psy7673 225 EQVTIGFRHFDIALKRIKPSVSKADCK 251 (541)
Q Consensus 225 ~~~~i~~~d~~~al~~~~~~~s~~~~~ 251 (541)
++.+++.+|.+.+......+..+
T Consensus 253 ----v~~~~v~~a~~~~~~~~~~~~~~ 275 (366)
T COG1474 253 ----VSEDHVREAQEEIERDVLEEVLK 275 (366)
T ss_pred ----cCHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999977766554444333
No 97
>PRK06893 DNA replication initiation factor; Validated
Probab=99.55 E-value=8.7e-14 Score=129.25 Aligned_cols=184 Identities=14% Similarity=0.133 Sum_probs=113.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
....++|+||||||||++++++|+++ +..+.+++..+.. .....++.... +..+|+|||++.+.++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~ 107 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE 107 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh
Confidence 34568999999999999999999986 4566666654221 11112233322 34799999999986432
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCeE-EEEecCCCCCCC---ccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcC
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFEGRGGVF-LMAATNRPDIID---PAVMRPGRFDRILFVNLPNEQDRKEILLALTKQG 166 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-vi~t~~~~~~l~---~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~ 166 (541)
. . ...|+..++......+.+ |++++..|..++ +.+++..++...+.++.|+.+++.+|++..+...
T Consensus 108 ~-------~---~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 108 E-------W---ELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred H-------H---HHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 1 1 123444444333333334 445555566554 7888833345789999999999999999988764
Q ss_pred CCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHH
Q psy7673 167 KDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALK 239 (541)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 239 (541)
+. .+.+ .....++ +..+| +.+.+..+++.....+..+ ...||...+++++.
T Consensus 178 ~l-~l~~-~v~~~L~--~~~~~-d~r~l~~~l~~l~~~~~~~-----------------~~~it~~~v~~~L~ 228 (229)
T PRK06893 178 GI-ELSD-EVANFLL--KRLDR-DMHTLFDALDLLDKASLQA-----------------QRKLTIPFVKEILG 228 (229)
T ss_pred CC-CCCH-HHHHHHH--HhccC-CHHHHHHHHHHHHHHHHhc-----------------CCCCCHHHHHHHhc
Confidence 32 2222 2345555 55555 6677777777653222211 12488888887764
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=3e-13 Score=140.73 Aligned_cols=164 Identities=18% Similarity=0.240 Sum_probs=116.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQCF 67 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~~ 67 (541)
.+.+..+||+||+|+|||++++.+|+.+++. +++++..+ ......++.+.
T Consensus 35 ~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li 108 (647)
T PRK07994 35 GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELL 108 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHH
Confidence 4566678999999999999999999988652 23333221 01122344444
Q ss_pred HHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCe
Q psy7673 68 QRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 68 ~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 143 (541)
..+. .....|++|||+|.|. ....+.|++.+++ ...++.||.+|+.++.|.+.+++ |+ .
T Consensus 109 ~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~ 171 (647)
T PRK07994 109 DNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-L 171 (647)
T ss_pred HHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-e
Confidence 4432 2345799999999984 2456799999985 34456777788888899999998 87 6
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
.+.|..++.++....|+..+...+. ..++..+..++ ..+.| +.|+..++++.+..
T Consensus 172 ~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia--~~s~G-s~R~Al~lldqaia 226 (647)
T PRK07994 172 QFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLA--RAADG-SMRDALSLTDQAIA 226 (647)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHH--HHcCC-CHHHHHHHHHHHHH
Confidence 8999999999999999999876531 12222344455 55666 78899999877653
No 99
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.54 E-value=1.4e-13 Score=133.98 Aligned_cols=156 Identities=24% Similarity=0.295 Sum_probs=99.9
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC--------CCCCeEEEEecC----CCCCCCccccCCCCC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--------GRGGVFLMAATN----RPDIIDPAVMRPGRF 141 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~vi~t~~----~~~~l~~~l~~~~r~ 141 (541)
+.+||||||||+++.+..+.+.+..-.-++..|+..+++.. +..++.|||+.- .|++|-|.|.- ||
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~ 324 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RF 324 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--cc
Confidence 45799999999999775333333334557889999998742 345688888765 45667788875 99
Q ss_pred CeEEEecCCCHHHHHHHH----HHHHhcCC-------CCCCCCCCCHHHHHhhh-----hcCCCCHHHHHHHHHHHHHHH
Q psy7673 142 DRILFVNLPNEQDRKEIL----LALTKQGK-------DPMMGEDVDFDKIAADE-----RCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~il----~~~~~~~~-------~~~~~~~~~~~~l~~~~-----~~~g~~~~dl~~l~~~a~~~a 205 (541)
+.++.+..++.++...|| ..++.++. ......+-.+..+|... .+.+..+|-|+.++++.....
T Consensus 325 Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~ 404 (441)
T TIGR00390 325 PIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDI 404 (441)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHH
Confidence 999999999999999998 23333321 11111222244444222 235667788888877776555
Q ss_pred HHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 206 ILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
.-+.- +. ......|+.+.+.+.+..+
T Consensus 405 ~fe~p---------~~-~~~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 405 SFEAP---------DL-SGQNITIDADYVSKKLGAL 430 (441)
T ss_pred HhcCC---------CC-CCCEEEECHHHHHhHHHHH
Confidence 43211 11 1234678888888777655
No 100
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.54 E-value=2.6e-13 Score=137.52 Aligned_cols=179 Identities=23% Similarity=0.369 Sum_probs=121.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHH----hcCCceEEEcCCccccC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRAR----NSQPCVIFFDEIDALCP 88 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~il~iDe~d~l~~ 88 (541)
....+++|+||||||||++++++++.++.+++.+++.... ...++.++..+. .....+|||||+|.+..
T Consensus 34 ~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~ 106 (413)
T PRK13342 34 GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNK 106 (413)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCH
Confidence 4456899999999999999999999999999999876431 223344444442 23557999999998842
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC-C-CCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcC
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN-R-PDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQG 166 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~-~-~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~ 166 (541)
...+.|+..++. ..+++|++|+ . ...+++++++ |+ ..+.|++++.++...+++..+...
T Consensus 107 ------------~~q~~LL~~le~----~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~ 167 (413)
T PRK13342 107 ------------AQQDALLPHVED----GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDK 167 (413)
T ss_pred ------------HHHHHHHHHhhc----CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHh
Confidence 234566666653 3456666543 3 3478899998 88 689999999999999999988753
Q ss_pred CCCC-CCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 167 KDPM-MGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 167 ~~~~-~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
.... ..++..+..++ +.+.| .++.+.++++.+... . ..|+.+++.+++...
T Consensus 168 ~~~~i~i~~~al~~l~--~~s~G-d~R~aln~Le~~~~~-----~----------------~~It~~~v~~~~~~~ 219 (413)
T PRK13342 168 ERGLVELDDEALDALA--RLANG-DARRALNLLELAALG-----V----------------DSITLELLEEALQKR 219 (413)
T ss_pred hcCCCCCCHHHHHHHH--HhCCC-CHHHHHHHHHHHHHc-----c----------------CCCCHHHHHHHHhhh
Confidence 2111 11111233444 44544 566666666665432 1 248999999998764
No 101
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.4e-13 Score=139.93 Aligned_cols=183 Identities=18% Similarity=0.244 Sum_probs=121.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGI------------------------NFISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~------------------------~~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
..+.+.++||+||||||||++|+++|+.+++ .++.++++.- .....++.+
T Consensus 32 ~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i 105 (472)
T PRK14962 32 KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASN------RGIDEIRKI 105 (472)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHH
Confidence 3456677999999999999999999998854 3444444311 112234444
Q ss_pred HHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
...+.. ....||+|||+|.+.. ..++.|+..++.. ...+++|++|+.+..+++.+++ |+
T Consensus 106 ~~~~~~~p~~~~~kVvIIDE~h~Lt~------------~a~~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~- 168 (472)
T PRK14962 106 RDAVGYRPMEGKYKVYIIDEVHMLTK------------EAFNALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC- 168 (472)
T ss_pred HHHHhhChhcCCeEEEEEEChHHhHH------------HHHHHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-
Confidence 444332 2346999999999842 3456778877753 3456777777777889999998 88
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCC
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGID 222 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 222 (541)
..+.|.+++.++...+++..+...+.. . ++..+..++ ..+.| ..|++.++++.+...+ .
T Consensus 169 ~vv~f~~l~~~el~~~L~~i~~~egi~-i-~~eal~~Ia--~~s~G-dlR~aln~Le~l~~~~-----~----------- 227 (472)
T PRK14962 169 QVIEFRNISDELIIKRLQEVAEAEGIE-I-DREALSFIA--KRASG-GLRDALTMLEQVWKFS-----E----------- 227 (472)
T ss_pred EEEEECCccHHHHHHHHHHHHHHcCCC-C-CHHHHHHHH--HHhCC-CHHHHHHHHHHHHHhc-----C-----------
Confidence 489999999999999999998765321 1 222345555 44444 5666666665543211 0
Q ss_pred CccccccCHHHHHHHHHhc
Q psy7673 223 DTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 223 ~~~~~~i~~~d~~~al~~~ 241 (541)
..|+.+++.+++...
T Consensus 228 ----~~It~e~V~~~l~~~ 242 (472)
T PRK14962 228 ----GKITLETVHEALGLI 242 (472)
T ss_pred ----CCCCHHHHHHHHcCC
Confidence 127888888877654
No 102
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.53 E-value=2.8e-13 Score=141.60 Aligned_cols=232 Identities=18% Similarity=0.154 Sum_probs=139.6
Q ss_pred ccccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcE-EEEecCc-----eeEeeCEEEEcCChhHHHhhhcc-
Q psy7673 294 SVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGV-KVTLNND-----QHIEANHVVSALPAPKLGMLLHK- 365 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~-~v~~~~g-----~~~~ad~VI~t~P~~~~~~ll~~- 365 (541)
..|.+.|||++|+++|++.+ +.|++|+++++|++|..+++++ .|...+| +++.||+||+|+|++.+.+++++
T Consensus 223 G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~ 302 (492)
T TIGR02733 223 GLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPL 302 (492)
T ss_pred CceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcc
Confidence 35889999999999999999 5578999999999999876642 2322232 57899999999999999998863
Q ss_pred -cCchhHhhhcCCCCcc-EEEEEEeeCCCCCC---CCccEEEecCCCCCCceEEEeecccc---cCCCcEEEEEEecCcc
Q psy7673 366 -QHPTLGNLLSSIEHVN-VAVINLAYENIPMK---QNAFGFLVPPREKLPILGVVFDSCCF---EQADWTILTVMMGGAW 437 (541)
Q Consensus 366 -~~~~~~~~l~~~~~~~-~~~v~l~~~~~~~~---~~~~g~l~~~~~~~~~~~~~~~s~~~---~~~~~~~l~~~~~g~~ 437 (541)
+++...+.+++.++.+ .+++++++++...+ ...+..+... . ...-+.. ++.. .+.+...+++++...+
T Consensus 303 ~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~--~-~~~~v~~-~~~d~~~aP~G~~~l~~~~~~~~ 378 (492)
T TIGR02733 303 GLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH--Q-GSLFVSI-SQEGDGRAPQGEATLIASSFTDT 378 (492)
T ss_pred cCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC--C-ceEEEEe-CCccccCCCCCceEEEEEcCCCH
Confidence 3445556677777766 55888999763211 1222222211 1 1111111 1111 1235556655543221
Q ss_pred C--C-----cccCCCCHHHHHHHHHHHHHhHcC-CCCCCceeEe---eec-------cCCCCCCCCCHHHH-HHHHHHHH
Q psy7673 438 Y--D-----TYFKGQSKEYILDIACRYVHEILD-MPRTPHAQHV---EIL-------KACIPQYTLGHAAR-VKDIQGYI 498 (541)
Q Consensus 438 ~--~-----~~~~~~~~e~~~~~~~~~l~~~~g-~~~~~~~~~~---~~w-------~~a~p~~~~g~~~~-~~~~~~~l 498 (541)
. . +|. ..++++.+.+++.+.+.++ +....+...+ ..| .+++ |...+... ...++...
T Consensus 379 ~~~~~~~~~~y~--~~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~--~G~~~~~~q~~~~~~~~ 454 (492)
T TIGR02733 379 NDWSSLDEEDYT--AKKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIV--GGLGQRPSTFGPFGLSS 454 (492)
T ss_pred HHHcCCCHHHHH--HHHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEE--CCCCcCccccCCcCCCC
Confidence 1 1 111 2246688899999988864 3333322222 111 1111 11111000 00010001
Q ss_pred hhCCCCEEEEcCCC-CCCChHHHHHHHHHHHHHHhh
Q psy7673 499 DTHQLPLYLTGSSY-DGVGVNDVIALSKKAVESIKW 533 (541)
Q Consensus 499 ~~~~~~l~laG~~~-~g~~v~~ai~sg~~aa~~i~~ 533 (541)
.++.+|||+||+|. .|.|+++++.||+.+|++|+.
T Consensus 455 ~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 455 RTPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhh
Confidence 24677999999998 478999999999999999853
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=1e-13 Score=140.65 Aligned_cols=196 Identities=15% Similarity=0.186 Sum_probs=129.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHH---HHHHHHHHHHhcCCceEEEcCCccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESER---AVRQCFQRARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~il~iDe~d~l 86 (541)
...++|+|++|+|||+|++++++++ +..++++++.++...+...... .+...... .....+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 3569999999999999999999865 5788999998887654433221 12222122 234579999999988
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCccccCCCCCC--eEEEecCCCHHHHHHHHHH
Q psy7673 87 CPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI---IDPAVMRPGRFD--RILFVNLPNEQDRKEILLA 161 (541)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~ 161 (541)
.++. .....|...++......+.+|+++...|+. +++.+.+ ||. ..+.+.+|+.++|.+|++.
T Consensus 219 ~~k~----------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 219 SYKE----------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred cCCH----------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHH
Confidence 5431 223345444444433444455555445543 5688888 774 7788999999999999999
Q ss_pred HHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 162 LTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
.+...+.....++-.+..++ ....| ++|.+..+++++...+..... ...|+.+.+.++++.+
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia--~~~~g-d~R~L~gaL~~l~~~a~~~~~---------------~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFIS--NYYSD-DVRKIKGSVSRLNFWSQQNPE---------------EKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHH--HccCC-CHHHHHHHHHHHHHHHhcccC---------------CCCCCHHHHHHHHhhc
Confidence 99865321111222345555 55555 788999999888655443211 1258999999999876
Q ss_pred C
Q psy7673 242 K 242 (541)
Q Consensus 242 ~ 242 (541)
.
T Consensus 349 ~ 349 (450)
T PRK14087 349 P 349 (450)
T ss_pred c
Confidence 3
No 104
>KOG2004|consensus
Probab=99.53 E-value=1.1e-13 Score=139.47 Aligned_cols=143 Identities=23% Similarity=0.406 Sum_probs=114.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc---------cccCchHHHHHHHHHHHHhcCCceEEEc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN---------MYLGESERAVRQCFQRARNSQPCVIFFD 81 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~il~iD 81 (541)
|...+.-+.|+||||+|||++++.||+.++..|+.++...+.. .|+|..-.++-+.+..+..+.| +++||
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiD 512 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILID 512 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEee
Confidence 5566777889999999999999999999999999998765543 3778888888888888777665 89999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHHHHhcCC-------------CCCCCeEEEEecCCCCCCCccccCCCCCCeEEEec
Q psy7673 82 EIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF-------------EGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVN 148 (541)
Q Consensus 82 e~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-------------~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~ 148 (541)
|+|.+...-++ + -..+|++.||-- ..-++++||||+|..+.||+.|++ |+. +|+++
T Consensus 513 EvDKlG~g~qG--D------PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIels 581 (906)
T KOG2004|consen 513 EVDKLGSGHQG--D------PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELS 581 (906)
T ss_pred hhhhhCCCCCC--C------hHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeecc
Confidence 99999743222 1 224566665531 122569999999999999999999 995 99999
Q ss_pred CCCHHHHHHHHHHHHhc
Q psy7673 149 LPNEQDRKEILLALTKQ 165 (541)
Q Consensus 149 ~p~~~~r~~il~~~~~~ 165 (541)
-+..+|...|.+.++-.
T Consensus 582 GYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 582 GYVAEEKVKIAERYLIP 598 (906)
T ss_pred CccHHHHHHHHHHhhhh
Confidence 99999999999887654
No 105
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.4e-13 Score=137.50 Aligned_cols=186 Identities=20% Similarity=0.240 Sum_probs=129.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc----------------------------EEEEeCccccccccCchHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN----------------------------FISVKGPELLNMYLGESERA 62 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~----------------------------~~~i~~~~l~~~~~~~~~~~ 62 (541)
..+.+.++||+||+|||||++++.+|+.+++. +++++.. .......
T Consensus 39 ~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~ 112 (507)
T PRK06645 39 NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAA------SKTSVDD 112 (507)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeecc------CCCCHHH
Confidence 34567789999999999999999999998552 1222211 1122345
Q ss_pred HHHHHHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCC
Q psy7673 63 VRQCFQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRP 138 (541)
Q Consensus 63 ~~~~~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~ 138 (541)
++.+++.+.. ....|++|||+|.+.. ...+.|++.++. ....+++|.+|+.++.+++.+++
T Consensus 113 Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S- 177 (507)
T PRK06645 113 IRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------GAFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS- 177 (507)
T ss_pred HHHHHHHHHhccccCCcEEEEEEChhhcCH------------HHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh-
Confidence 5666665542 2347999999998842 346678888874 34456777777878889999988
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q psy7673 139 GRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQ 218 (541)
Q Consensus 139 ~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~ 218 (541)
|+ ..++|..++.++...+++..+...+.. .++..+..++ ..+.| +.|++.++++.+...+..+
T Consensus 178 -Rc-~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia--~~s~G-slR~al~~Ldkai~~~~~~---------- 240 (507)
T PRK06645 178 -RC-QRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIA--YKSEG-SARDAVSILDQAASMSAKS---------- 240 (507)
T ss_pred -cc-eEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHHhhccC----------
Confidence 88 589999999999999999999875421 1222345555 55666 8899999998886543100
Q ss_pred CCCCCccccccCHHHHHHHHHhc
Q psy7673 219 AGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 219 ~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
...|+.+++.+.+...
T Consensus 241 -------~~~It~~~V~~llg~~ 256 (507)
T PRK06645 241 -------DNIISPQVINQMLGLV 256 (507)
T ss_pred -------CCCcCHHHHHHHHCCC
Confidence 0137888888777554
No 106
>PRK08727 hypothetical protein; Validated
Probab=99.52 E-value=2.4e-13 Score=126.50 Aligned_cols=182 Identities=16% Similarity=0.214 Sum_probs=115.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
....++|+||+|||||++++++++++ +..+.+++..++. ..+...+.... +..+|+|||+|.+..+.
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~--~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALE--GRSLVALDGLESIAGQR 109 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHh--cCCEEEEeCcccccCCh
Confidence 34569999999999999999998776 6677788765532 22333444433 34799999999886432
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCC---CCccccCCCCC--CeEEEecCCCHHHHHHHHHHHHh
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN-RPDI---IDPAVMRPGRF--DRILFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~-~~~~---l~~~l~~~~r~--~~~i~~~~p~~~~r~~il~~~~~ 164 (541)
. . ...++..++....+. ..+|.|++ .|.. +++.+++ || ...+.+++|+.+++.+|++.++.
T Consensus 110 ~-------~---~~~lf~l~n~~~~~~-~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 110 E-------D---EVALFDFHNRARAAG-ITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred H-------H---HHHHHHHHHHHHHcC-CeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 1 1 223334443332222 33555554 5554 4688988 86 46899999999999999999877
Q ss_pred cCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHh
Q psy7673 165 QGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKR 240 (541)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 240 (541)
..+. . .++..+..++ +.+.| ..+.+.++++.....+... + ..||.+.+++.+..
T Consensus 177 ~~~l-~-l~~e~~~~La--~~~~r-d~r~~l~~L~~l~~~~~~~---~--------------~~it~~~~~~~l~~ 230 (233)
T PRK08727 177 RRGL-A-LDEAAIDWLL--THGER-ELAGLVALLDRLDRESLAA---K--------------RRVTVPFLRRVLEE 230 (233)
T ss_pred HcCC-C-CCHHHHHHHH--HhCCC-CHHHHHHHHHHHHHHHHHh---C--------------CCCCHHHHHHHHhh
Confidence 5431 1 2222345555 45444 4555555566554433322 1 24888888888764
No 107
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.52 E-value=1.5e-13 Score=142.76 Aligned_cols=191 Identities=23% Similarity=0.308 Sum_probs=124.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCcccc--c-----cccCchHHHH---HHHH-----
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELL--N-----MYLGESERAV---RQCF----- 67 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~--~-----~~~~~~~~~~---~~~~----- 67 (541)
..+.++||+||||||||++|+++.+.. +.+++.+||.... . ..++.....+ ...|
T Consensus 84 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~ 163 (531)
T TIGR02902 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGI 163 (531)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCc
Confidence 356789999999999999999998643 3678999986421 1 1111000000 0000
Q ss_pred -----HHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC--------------------------CC
Q psy7673 68 -----QRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--------------------------GR 116 (541)
Q Consensus 68 -----~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------------------------~~ 116 (541)
........++|||||+|.|.+. .++.|+..+++-. -+
T Consensus 164 ~~~~~G~l~~a~gG~L~IdEI~~L~~~------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (531)
T TIGR02902 164 PQPKPGAVTRAHGGVLFIDEIGELHPV------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLP 231 (531)
T ss_pred ccccCchhhccCCcEEEEechhhCCHH------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcc
Confidence 0111234479999999998543 3445555554310 01
Q ss_pred CC-eEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHH
Q psy7673 117 GG-VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLE 195 (541)
Q Consensus 117 ~~-~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~ 195 (541)
.. .++++|++.++.+++++++ |+. .+.|++++.+++.+|++..+++.+. .+.+ ..++.++ ..+ .+.|++.
T Consensus 232 ~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i-~is~-~al~~I~--~y~--~n~Rel~ 302 (531)
T TIGR02902 232 ADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGI-NLEK-HALELIV--KYA--SNGREAV 302 (531)
T ss_pred cceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCC-CcCH-HHHHHHH--Hhh--hhHHHHH
Confidence 12 3455667789999999998 884 7889999999999999999987542 1121 1233333 322 3689999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHh
Q psy7673 196 QLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKR 240 (541)
Q Consensus 196 ~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 240 (541)
++++.|...|..+.. ..|+.+|+++++..
T Consensus 303 nll~~Aa~~A~~~~~----------------~~It~~dI~~vl~~ 331 (531)
T TIGR02902 303 NIVQLAAGIALGEGR----------------KRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHHhhCCC----------------cEEcHHHHHHHhCC
Confidence 999999877754321 35999999999874
No 108
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.52 E-value=2.8e-13 Score=145.87 Aligned_cols=206 Identities=17% Similarity=0.215 Sum_probs=139.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc---------cccCchHHHHHHHHHHHHhcCCceEEEcCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN---------MYLGESERAVRQCFQRARNSQPCVIFFDEI 83 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~il~iDe~ 83 (541)
..+..++|+||||+|||++++.+|..++.+++.++++.... .+.+.....+.+.+..+.... .||+|||+
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~-~villDEi 425 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEI 425 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCC-CEEEEECh
Confidence 45567999999999999999999999999999998765432 233444444444444443333 48999999
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHHhcCC-------------CCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCC
Q psy7673 84 DALCPKRSSLGDNNSSMRIVNQLLTEMDGF-------------EGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLP 150 (541)
Q Consensus 84 d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-------------~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p 150 (541)
|.+..+.+. .....|+..++.- ..-+++++|+|+|.. .++++|++ ||. .|.+..+
T Consensus 426 dk~~~~~~g--------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~ 493 (784)
T PRK10787 426 DKMSSDMRG--------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGY 493 (784)
T ss_pred hhcccccCC--------CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCC
Confidence 999755322 2345777766631 123678999999987 59999999 995 8999999
Q ss_pred CHHHHHHHHHHHHhc-C----CCC---CCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCC
Q psy7673 151 NEQDRKEILLALTKQ-G----KDP---MMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGID 222 (541)
Q Consensus 151 ~~~~r~~il~~~~~~-~----~~~---~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 222 (541)
+.++..+|.+.++.. . ... ...++-....++. ..+..+.+|.|+..+++.......+.... .
T Consensus 494 t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~~~---------~ 563 (784)
T PRK10787 494 TEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLLD---------K 563 (784)
T ss_pred CHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHHhc---------C
Confidence 999999999888741 1 000 0011111333332 45566778999999988877777665422 0
Q ss_pred CccccccCHHHHHHHHHhc
Q psy7673 223 DTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 223 ~~~~~~i~~~d~~~al~~~ 241 (541)
......|+.+++.+.|..-
T Consensus 564 ~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 564 SLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred CCceeeecHHHHHHHhCCC
Confidence 1123568888888777643
No 109
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.52 E-value=3.3e-13 Score=134.50 Aligned_cols=211 Identities=23% Similarity=0.306 Sum_probs=136.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc-cccCchH-HHHHHHHHH----HHhcCCceEEEcCCcccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN-MYLGESE-RAVRQCFQR----ARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~-~~~~~~~-~~~~~~~~~----~~~~~~~il~iDe~d~l~ 87 (541)
+..++||+||||||||++++++|+.++.+++.+++..+.. .|.|... ..+...+.. .....++||||||+|.+.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 4578999999999999999999999999999999988753 4555533 333443332 223467899999999998
Q ss_pred CCCCCCC--CCChhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCC-------------------------
Q psy7673 88 PKRSSLG--DNNSSMRIVNQLLTEMDGFE-----------GRGGVFLMAATNRPD------------------------- 129 (541)
Q Consensus 88 ~~~~~~~--~~~~~~~~~~~l~~~l~~~~-----------~~~~~~vi~t~~~~~------------------------- 129 (541)
....... .......+++.|++.|++.. ...+.++|.|+|...
T Consensus 187 ~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~ 266 (412)
T PRK05342 187 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFG 266 (412)
T ss_pred cccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCc
Confidence 7632211 11112357788998887531 111245555554300
Q ss_pred ---------------------------CCCccccCCCCCCeEEEecCCCHHHHHHHHHH----HHhc-------CCCCCC
Q psy7673 130 ---------------------------IIDPAVMRPGRFDRILFVNLPNEQDRKEILLA----LTKQ-------GKDPMM 171 (541)
Q Consensus 130 ---------------------------~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~----~~~~-------~~~~~~ 171 (541)
-+.|+|.. |++.++.|.+.+.++..+|+.. ++++ .+....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~ 344 (412)
T PRK05342 267 AEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELE 344 (412)
T ss_pred cccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 02455554 9999999999999999999973 3322 111111
Q ss_pred CCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHH
Q psy7673 172 GEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFD 235 (541)
Q Consensus 172 ~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 235 (541)
.++-....++......++.+|.|+.++++.......+..+. .......|+.+.+.
T Consensus 345 ~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~---------~~~~~v~I~~~~v~ 399 (412)
T PRK05342 345 FTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSR---------EDVEKVVITKEVVE 399 (412)
T ss_pred ECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcccc---------CCCceEEECHHHhc
Confidence 22223455664345677889999999999988877665431 11123457777765
No 110
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.52 E-value=2.4e-13 Score=126.73 Aligned_cols=182 Identities=15% Similarity=0.140 Sum_probs=114.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
...+++|+||+|||||++++++++++ +..+.+++..+... ....++..... ..+|+|||+|.+.++.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~ 113 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE 113 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH
Confidence 44689999999999999999999876 45567777654321 11122222222 2699999999985432
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCC-eEEEEecCCCCC---CCccccCCCCCC--eEEEecCCCHHHHHHHHHHHHh
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFEGRGG-VFLMAATNRPDI---IDPAVMRPGRFD--RILFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~vi~t~~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~~ 164 (541)
. ....|...++.....++ .+++++++.|.. +.+.+++ |+. ..+.+.+|+.+++.++++..+.
T Consensus 114 ~----------~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 114 L----------WEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred H----------HHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 1 11233333333222333 345555555554 5789998 875 7899999999999999998777
Q ss_pred cCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHH
Q psy7673 165 QGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALK 239 (541)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 239 (541)
..+ ..+.++ ..+.++ +...+ +.+.+..+++.....+..+ ...||.+.+++++.
T Consensus 182 ~~~-~~l~~~-v~~~L~--~~~~~-d~r~l~~~l~~l~~~~l~~-----------------~~~it~~~~k~~l~ 234 (235)
T PRK08084 182 LRG-FELPED-VGRFLL--KRLDR-EMRTLFMTLDQLDRASITA-----------------QRKLTIPFVKEILK 234 (235)
T ss_pred HcC-CCCCHH-HHHHHH--HhhcC-CHHHHHHHHHHHHHHHHhc-----------------CCCCCHHHHHHHHc
Confidence 643 222222 355555 55555 6788888888753222211 12488888887764
No 111
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=6.7e-13 Score=140.12 Aligned_cols=169 Identities=19% Similarity=0.171 Sum_probs=114.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE-E-EeCcc------cccc-------cc---CchHHHHHHHHHHHH--
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFI-S-VKGPE------LLNM-------YL---GESERAVRQCFQRAR-- 71 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~-~-i~~~~------l~~~-------~~---~~~~~~~~~~~~~~~-- 71 (541)
.+.+..+||+||+|||||++++.+|+.+++.-. . ..|.. +... +- ......++.+...+.
T Consensus 35 ~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~ 114 (944)
T PRK14949 35 QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYR 114 (944)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhh
Confidence 356666899999999999999999999865311 0 01110 0000 00 011223444444332
Q ss_pred --hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecC
Q psy7673 72 --NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNL 149 (541)
Q Consensus 72 --~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~ 149 (541)
.....|+||||+|.|. ...++.|++.|+.. ..++++|.+|+.+..|.+.+++ |+ ..+.|++
T Consensus 115 P~~gk~KViIIDEAh~LT------------~eAqNALLKtLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkp 177 (944)
T PRK14949 115 PSRGRFKVYLIDEVHMLS------------RSSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKS 177 (944)
T ss_pred hhcCCcEEEEEechHhcC------------HHHHHHHHHHHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCC
Confidence 2345799999999984 34677999999853 3456777778888889999998 87 5899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 150 PNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 150 p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
++.++....|++.+...+ ...++-.+..++ +.+.| ++|++.++++.+.
T Consensus 178 Ls~eEI~~~L~~il~~Eg--I~~edeAL~lIA--~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 178 LTQDEIGTQLNHILTQEQ--LPFEAEALTLLA--KAANG-SMRDALSLTDQAI 225 (944)
T ss_pred CCHHHHHHHHHHHHHHcC--CCCCHHHHHHHH--HHcCC-CHHHHHHHHHHHH
Confidence 999999999999988643 112222345555 56666 7889999988776
No 112
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.51 E-value=1e-13 Score=129.53 Aligned_cols=183 Identities=16% Similarity=0.212 Sum_probs=115.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
...+.+++|+||+|||||++++++++++ +.++++++|.++.... ...+.... ...+|+|||+|.+..
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAG 104 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcC
Confidence 3467789999999999999999999877 5789999998775321 22222222 246999999999853
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC---ccccCCCCC--CeEEEecCCCHHHHHHHHHHHH
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIID---PAVMRPGRF--DRILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~---~~l~~~~r~--~~~i~~~~p~~~~r~~il~~~~ 163 (541)
.. . ....+...++........+|++++..+..++ +.+.+ |+ ...+.+++|+.+++..+++..+
T Consensus 105 ~~-------~---~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 105 QP-------E---WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred Ch-------H---HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 21 0 1123333333222222334444443443332 56666 65 4789999999999999999887
Q ss_pred hcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHH
Q psy7673 164 KQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIAL 238 (541)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 238 (541)
..... .. ++-.+..++ ....| +.+++.++++.+...+.+.. ..|+.+.+.+.+
T Consensus 173 ~~~~~-~~-~~~~l~~L~--~~~~g-n~r~L~~~l~~~~~~~~~~~-----------------~~i~~~~~~~~~ 225 (226)
T TIGR03420 173 ARRGL-QL-PDEVADYLL--RHGSR-DMGSLMALLDALDRASLAAK-----------------RKITIPFVKEVL 225 (226)
T ss_pred HHcCC-CC-CHHHHHHHH--HhccC-CHHHHHHHHHHHHHHHHHhC-----------------CCCCHHHHHHHh
Confidence 65431 11 222244555 44444 78999999998776554332 237777776655
No 113
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.51 E-value=1.8e-13 Score=149.54 Aligned_cols=184 Identities=23% Similarity=0.323 Sum_probs=129.7
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCcccc--ccccCchHHHHHHHHHHHHh-cCCc
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELL--NMYLGESERAVRQCFQRARN-SQPC 76 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~-~~~~ 76 (541)
|..+...+++|+||||||||++++.++..+ +.+++.++...+. .++.++.+..++.+|..+.. ..+.
T Consensus 194 L~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ 273 (857)
T PRK10865 194 LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNV 273 (857)
T ss_pred HhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCe
Confidence 456677789999999999999999999988 6789999988876 35678889999999988654 4578
Q ss_pred eEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCC
Q psy7673 77 VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPN 151 (541)
Q Consensus 77 il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~ 151 (541)
||||||+|.+.+.+...+. ....+.|...+ .++.+.+|++|+..+ .+|+++.| ||. .|.+..|+
T Consensus 274 ILfIDEih~l~~~~~~~~~----~d~~~~lkp~l----~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~ 342 (857)
T PRK10865 274 ILFIDELHTMVGAGKADGA----MDAGNMLKPAL----ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPS 342 (857)
T ss_pred EEEEecHHHhccCCCCccc----hhHHHHhcchh----hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCC
Confidence 9999999999876543221 12233333333 356789999999765 48999999 997 67899999
Q ss_pred HHHHHHHHHHHHhcCCCCC-CC-CCCCHHHH---HhhhhcCCCCHHHHHHHHHHHHHH
Q psy7673 152 EQDRKEILLALTKQGKDPM-MG-EDVDFDKI---AADERCEGFSGADLEQLVKEAREQ 204 (541)
Q Consensus 152 ~~~r~~il~~~~~~~~~~~-~~-~~~~~~~l---~~~~~~~g~~~~dl~~l~~~a~~~ 204 (541)
.+++..|++.+...+.... +. .+..+... +..-.++.+-|.....+++.+...
T Consensus 343 ~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 343 VEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred HHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcc
Confidence 9999999998876542211 11 11111111 111123345566666677666444
No 114
>PRK05642 DNA replication initiation factor; Validated
Probab=99.51 E-value=2.2e-13 Score=126.75 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=119.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRS 91 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~ 91 (541)
...++|+||+|+|||+|++++++++ +..++++++.++... ...+.+.... ..+|+|||++.+.++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCChH
Confidence 4679999999999999999999765 678889998776532 1222333332 26999999998854321
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCccccCCCCCC--eEEEecCCCHHHHHHHHHHHHhcC
Q psy7673 92 SLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI---IDPAVMRPGRFD--RILFVNLPNEQDRKEILLALTKQG 166 (541)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~~~~ 166 (541)
....|+..++....+.+.++++++..|.. +.+.+++ ||. ..+.+..|+.+++..+++..+...
T Consensus 115 ----------~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~ 182 (234)
T PRK05642 115 ----------WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRR 182 (234)
T ss_pred ----------HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 12345555554444555677777665543 4688888 873 678899999999999999766654
Q ss_pred CCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHH
Q psy7673 167 KDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALK 239 (541)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 239 (541)
+ ..+.+ ...+.++ +...+ +.+.+..+++.....+.... ..||..-++++|.
T Consensus 183 ~-~~l~~-ev~~~L~--~~~~~-d~r~l~~~l~~l~~~~l~~~-----------------~~it~~~~~~~L~ 233 (234)
T PRK05642 183 G-LHLTD-EVGHFIL--TRGTR-SMSALFDLLERLDQASLQAQ-----------------RKLTIPFLKETLG 233 (234)
T ss_pred C-CCCCH-HHHHHHH--HhcCC-CHHHHHHHHHHHHHHHHHcC-----------------CcCCHHHHHHHhc
Confidence 3 12222 2245555 44444 77888888777654333211 2477777777764
No 115
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.3e-13 Score=141.68 Aligned_cols=163 Identities=18% Similarity=0.202 Sum_probs=115.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQCF 67 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~~ 67 (541)
.+.+..+||+||+|+|||++++.+|+.+++. +++++..+ ......++.+.
T Consensus 35 ~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~ 108 (509)
T PRK14958 35 QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELL 108 (509)
T ss_pred CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHH
Confidence 4566679999999999999999999988542 44444321 11223344554
Q ss_pred HHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCe
Q psy7673 68 QRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 68 ~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 143 (541)
+.+. ..+..|++|||+|.|.. ...+.|++.+++. ..++.+|.+|+++..+.+.+++ |+ .
T Consensus 109 ~~~~~~p~~~~~kV~iIDE~~~ls~------------~a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~ 171 (509)
T PRK14958 109 DNIPYAPTKGRFKVYLIDEVHMLSG------------HSFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-L 171 (509)
T ss_pred HHHhhccccCCcEEEEEEChHhcCH------------HHHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-h
Confidence 4432 23447999999999853 3467888888864 3456777777888888888988 87 4
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
.++|..++.++....++..+...+.. .++..+..++ +.+.| +.+++.++++.+.
T Consensus 172 ~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia--~~s~G-slR~al~lLdq~i 225 (509)
T PRK14958 172 QFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLA--RAANG-SVRDALSLLDQSI 225 (509)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-cHHHHHHHHHHHH
Confidence 78899999999999999999875422 1222344555 55555 7889999988774
No 116
>KOG0989|consensus
Probab=99.51 E-value=5.3e-13 Score=122.11 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=113.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC------cEEEEeCccccccccCc-hHHHHHHHHHHH-----HhcCC-ceEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGI------NFISVKGPELLNMYLGE-SERAVRQCFQRA-----RNSQP-CVIF 79 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~------~~~~i~~~~l~~~~~~~-~~~~~~~~~~~~-----~~~~~-~il~ 79 (541)
+...++|||||||||||+.++++|+++.. .+.+.+.++..+..... -.+.+..+.... ..++| .|++
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiI 134 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIII 134 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEE
Confidence 67788999999999999999999999854 34445555544432111 111111111111 11223 7999
Q ss_pred EcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHH
Q psy7673 80 FDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEIL 159 (541)
Q Consensus 80 iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il 159 (541)
|||+|.+.. ..+..|.+.++.... ..+||..||..+.|+..+.+ |+. .+.|+....+.....|
T Consensus 135 lDEcdsmts------------daq~aLrr~mE~~s~--~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL 197 (346)
T KOG0989|consen 135 LDECDSMTS------------DAQAALRRTMEDFSR--TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRL 197 (346)
T ss_pred EechhhhhH------------HHHHHHHHHHhcccc--ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHH
Confidence 999999853 455688888887443 46889999999999999998 885 6788988999999999
Q ss_pred HHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 160 LALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
+.++..++... ++-.+..++ ..++| +-|+....++.+..
T Consensus 198 ~~Ia~~E~v~~--d~~al~~I~--~~S~G-dLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 198 EKIASKEGVDI--DDDALKLIA--KISDG-DLRRAITTLQSLSL 236 (346)
T ss_pred HHHHHHhCCCC--CHHHHHHHH--HHcCC-cHHHHHHHHHHhhc
Confidence 99999865322 222244455 45555 55555566665544
No 117
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.51 E-value=1.6e-13 Score=150.32 Aligned_cols=183 Identities=25% Similarity=0.395 Sum_probs=133.3
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCcccc--ccccCchHHHHHHHHHHHHhcCCce
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELL--NMYLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
+..+..++++|+||||||||++++.+|.++ +.+++.+++..+. ..|.|+.+..++.+++++....+.|
T Consensus 195 L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~I 274 (821)
T CHL00095 195 LGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNII 274 (821)
T ss_pred HcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeE
Confidence 466778899999999999999999999987 4789999998876 4678899999999999998777899
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCCH
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPNE 152 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~ 152 (541)
|||||+|.|.+.+...+.. ...+.|...+. ++.+.+|++|+..+ ..++.+.+ ||. .|.++.|+.
T Consensus 275 LfiDEih~l~~~g~~~g~~----~~a~lLkp~l~----rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~ 343 (821)
T CHL00095 275 LVIDEVHTLIGAGAAEGAI----DAANILKPALA----RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSV 343 (821)
T ss_pred EEEecHHHHhcCCCCCCcc----cHHHHhHHHHh----CCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCH
Confidence 9999999998765432221 22333333443 56689999998654 47899998 996 688999999
Q ss_pred HHHHHHHHHHHhcC---CCCCCCCCCCHHHHHhhhhcCC-----CCHHHHHHHHHHHHHHHH
Q psy7673 153 QDRKEILLALTKQG---KDPMMGEDVDFDKIAADERCEG-----FSGADLEQLVKEAREQAI 206 (541)
Q Consensus 153 ~~r~~il~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g-----~~~~dl~~l~~~a~~~a~ 206 (541)
++...|++.....+ ......++ .+..++ ..+.+ +.|+....+++.|.....
T Consensus 344 ~e~~aILr~l~~~~e~~~~v~i~de-al~~i~--~ls~~yi~~r~lPdkaidlld~a~a~~~ 402 (821)
T CHL00095 344 EETIEILFGLRSRYEKHHNLSISDK-ALEAAA--KLSDQYIADRFLPDKAIDLLDEAGSRVR 402 (821)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHH-HHHHHH--HHhhccCccccCchHHHHHHHHHHHHHH
Confidence 99999998765432 21111111 133333 33444 456777888888876553
No 118
>PRK04195 replication factor C large subunit; Provisional
Probab=99.50 E-value=5.7e-13 Score=137.76 Aligned_cols=162 Identities=20% Similarity=0.310 Sum_probs=111.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHh------cCCceEEEcCCccc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARN------SQPCVIFFDEIDAL 86 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDe~d~l 86 (541)
.+++++||+||||||||++++++|++++++++++++++.... ..+..+...+.. ..+.+|+|||+|.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGI 110 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccc
Confidence 457899999999999999999999999999999998875321 223333322221 24679999999998
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCc-cccCCCCCCeEEEecCCCHHHHHHHHHHHHhc
Q psy7673 87 CPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDP-AVMRPGRFDRILFVNLPNEQDRKEILLALTKQ 165 (541)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~-~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~ 165 (541)
.... .......|+..++. .+..+|+++|.+..+.. .+++ |+ ..|.|++|+.+++..+++..+..
T Consensus 111 ~~~~--------d~~~~~aL~~~l~~----~~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 111 HGNE--------DRGGARAILELIKK----AKQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred cccc--------chhHHHHHHHHHHc----CCCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 6532 11234566666652 23456777888777776 6665 54 58999999999999999999987
Q ss_pred CCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 166 GKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
.+.. . ++..+..++ +.+ .+|++.+++....
T Consensus 176 egi~-i-~~eaL~~Ia--~~s----~GDlR~ain~Lq~ 205 (482)
T PRK04195 176 EGIE-C-DDEALKEIA--ERS----GGDLRSAINDLQA 205 (482)
T ss_pred cCCC-C-CHHHHHHHH--HHc----CCCHHHHHHHHHH
Confidence 5422 1 222345555 333 3477777665544
No 119
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.50 E-value=1e-13 Score=127.38 Aligned_cols=172 Identities=23% Similarity=0.375 Sum_probs=110.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHH-HHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESER-AVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
...++||||+|+|||+|++++++++ +..++++++.++...+...... .+........ ...+|+|||+|.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC
Confidence 3468999999999999999999876 6789999998876554322211 1222223322 447999999999853
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCccccCCCCCC--eEEEecCCCHHHHHHHHHHHH
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI---IDPAVMRPGRFD--RILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~ 163 (541)
+ ......|+..++......+.+|+++...|.. +++.+.+ ||. ..+.+..|+.++|.+|++..+
T Consensus 112 ~----------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 112 K----------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp H----------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHH
T ss_pred c----------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 3 2344566666665555566677777666664 5677877 764 689999999999999999999
Q ss_pred hcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHH
Q psy7673 164 KQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a 205 (541)
...+.. +.++ ..+.++ ....+ +.++|..++++....+
T Consensus 180 ~~~~~~-l~~~-v~~~l~--~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 180 KERGIE-LPEE-VIEYLA--RRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp HHTT---S-HH-HHHHHH--HHTTS-SHHHHHHHHHHHHHHH
T ss_pred HHhCCC-CcHH-HHHHHH--HhhcC-CHHHHHHHHHHHHHHh
Confidence 876533 2222 234444 33333 7888888888775544
No 120
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.50 E-value=4.1e-13 Score=147.47 Aligned_cols=185 Identities=24% Similarity=0.354 Sum_probs=132.4
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCcccc--ccccCchHHHHHHHHHHHHhc-CCc
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELL--NMYLGESERAVRQCFQRARNS-QPC 76 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~~-~~~ 76 (541)
+..+...+++|+||||||||++++.++..+ +.+++.++...+. ..+.++.+..++.++..+... .+.
T Consensus 189 l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ 268 (852)
T TIGR03346 189 LSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQI 268 (852)
T ss_pred HhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCe
Confidence 345677889999999999999999999986 6788888888775 457788889999999988653 578
Q ss_pred eEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCC
Q psy7673 77 VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPN 151 (541)
Q Consensus 77 il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~ 151 (541)
||||||+|.|.+.+...+ ..+..+.|...+ .++.+.+|++|+..+ .+|+++.| ||. .|.++.|+
T Consensus 269 ILfIDEih~l~~~g~~~~----~~d~~~~Lk~~l----~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~ 337 (852)
T TIGR03346 269 ILFIDELHTLVGAGKAEG----AMDAGNMLKPAL----ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPT 337 (852)
T ss_pred EEEeccHHHhhcCCCCcc----hhHHHHHhchhh----hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCC
Confidence 999999999986543211 122333333332 356789999998653 47999999 996 68899999
Q ss_pred HHHHHHHHHHHHhcCCCCCCC--CCCCHHHHHhhhhc-----CCCCHHHHHHHHHHHHHHHHH
Q psy7673 152 EQDRKEILLALTKQGKDPMMG--EDVDFDKIAADERC-----EGFSGADLEQLVKEAREQAIL 207 (541)
Q Consensus 152 ~~~r~~il~~~~~~~~~~~~~--~~~~~~~l~~~~~~-----~g~~~~dl~~l~~~a~~~a~~ 207 (541)
.+++..|++.+...+....-. .+..+...+ ..+ +-+-|.....|++.|......
T Consensus 338 ~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~--~ls~~yi~~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 338 VEDTISILRGLKERYEVHHGVRITDPAIVAAA--TLSHRYITDRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCHHHHHHHH--HhccccccccCCchHHHHHHHHHHHHHHh
Confidence 999999999887764321111 111122222 333 345678888899988776543
No 121
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.50 E-value=3.3e-13 Score=125.88 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=116.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
.....+++|+||+|||||+++++++++. +.+++++++.++... +. ......+|+|||+|.+..
T Consensus 39 ~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 39 PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLDD 104 (227)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcCc
Confidence 3456789999999999999999999876 678899998765321 11 122357999999998742
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC-CCC--CCCccccCCCCC--CeEEEecCCCHHHHHHHHHHHH
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN-RPD--IIDPAVMRPGRF--DRILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~-~~~--~l~~~l~~~~r~--~~~i~~~~p~~~~r~~il~~~~ 163 (541)
. ....|...++........++|.+++ .+. .+.+.+.+ || ...+.+++|+.+++..+++..+
T Consensus 105 ~------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 105 A------------QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred h------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 2 1223444444333344433444444 332 24566776 66 4689999999999999999887
Q ss_pred hcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHH
Q psy7673 164 KQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALK 239 (541)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 239 (541)
...... + ++-.+..++ ....| +.+++.++++.....+.... ..||...+++++.
T Consensus 171 ~~~~v~-l-~~~al~~L~--~~~~g-n~~~l~~~l~~l~~~~~~~~-----------------~~i~~~~~~~~l~ 224 (227)
T PRK08903 171 AERGLQ-L-ADEVPDYLL--THFRR-DMPSLMALLDALDRYSLEQK-----------------RPVTLPLLREMLA 224 (227)
T ss_pred HHcCCC-C-CHHHHHHHH--HhccC-CHHHHHHHHHHHHHHHHHhC-----------------CCCCHHHHHHHHh
Confidence 764321 2 222344555 44555 78888888887544443221 2588888888875
No 122
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=3.6e-13 Score=136.08 Aligned_cols=165 Identities=21% Similarity=0.233 Sum_probs=118.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC------------------------CcEEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAG------------------------INFISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~------------------------~~~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
..+.+.++||+||+|+|||++++.+|+.++ ..++++|.++- .....++.+
T Consensus 31 ~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~I 104 (491)
T PRK14964 31 LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVI 104 (491)
T ss_pred cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccC------CCHHHHHHH
Confidence 346677999999999999999999998663 24455555422 123345555
Q ss_pred HHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
.+.+.. ....|++|||+|.|.. ..++.|++.+++. ...+.+|.+|+.++.+.+.+++ |+
T Consensus 105 ie~~~~~P~~~~~KVvIIDEah~Ls~------------~A~NaLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc- 167 (491)
T PRK14964 105 LENSCYLPISSKFKVYIIDEVHMLSN------------SAFNALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC- 167 (491)
T ss_pred HHHHHhccccCCceEEEEeChHhCCH------------HHHHHHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-
Confidence 555432 3457999999998842 3567889988863 3456777777888889999998 88
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
..++|..++.++..+.++..+...+.. .++..+..++ +.+.| +.+++.++++.+..
T Consensus 168 ~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa--~~s~G-slR~alslLdqli~ 223 (491)
T PRK14964 168 QRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIA--ENSSG-SMRNALFLLEQAAI 223 (491)
T ss_pred eeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHH
Confidence 479999999999999999999875422 1222344555 55555 78888888888754
No 123
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=3.9e-13 Score=130.86 Aligned_cols=156 Identities=24% Similarity=0.297 Sum_probs=99.4
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCC--------CCCCCeEEEEecC----CCCCCCccccCCCCC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF--------EGRGGVFLMAATN----RPDIIDPAVMRPGRF 141 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~~vi~t~~----~~~~l~~~l~~~~r~ 141 (541)
..+||||||||+++......+.+..-.-++..|+..+++. .+..++.|||+.- .|++|-|.|.- ||
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~ 326 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RF 326 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--cc
Confidence 4479999999999977543333333456888999999874 2345688888764 45567788876 99
Q ss_pred CeEEEecCCCHHHHHHHH----HHHHhcCCC-------CCCCCCCCHHHHHhhhh-----cCCCCHHHHHHHHHHHHHHH
Q psy7673 142 DRILFVNLPNEQDRKEIL----LALTKQGKD-------PMMGEDVDFDKIAADER-----CEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~il----~~~~~~~~~-------~~~~~~~~~~~l~~~~~-----~~g~~~~dl~~l~~~a~~~a 205 (541)
+.++.+..++.++...|| ..++.++.. .....+-.+..+|.... +.+..+|-|+.++++.....
T Consensus 327 Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~ 406 (443)
T PRK05201 327 PIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDI 406 (443)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHH
Confidence 999999999999999999 334433221 11112222444442222 25666788888877775554
Q ss_pred HHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 206 ILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
.-+.- +. ......|+.+-+...+..+
T Consensus 407 ~Fe~p---------~~-~~~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 407 SFEAP---------DM-SGETVTIDAAYVDEKLGDL 432 (443)
T ss_pred hccCC---------CC-CCCEEEECHHHHHHHHHHH
Confidence 32211 11 1234568888887777654
No 124
>KOG2028|consensus
Probab=99.49 E-value=7.1e-13 Score=123.48 Aligned_cols=190 Identities=22% Similarity=0.363 Sum_probs=121.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeCccccccccCchHHHHHHHHHHHHh-----cCCceEEEcC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAG---INFISVKGPELLNMYLGESERAVRQCFQRARN-----SQPCVIFFDE 82 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~il~iDe 82 (541)
....-.+++||||||||||+++|.++.... +.|+++++.. ......+.+|+.++. .+..||||||
T Consensus 158 eq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDE 230 (554)
T KOG2028|consen 158 EQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDE 230 (554)
T ss_pred HcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHH
Confidence 345566899999999999999999998774 4477776542 223456677777653 3457999999
Q ss_pred CccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC-CC-CCCCccccCCCCCCeEEEecCCCHHHHHHHHH
Q psy7673 83 IDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN-RP-DIIDPAVMRPGRFDRILFVNLPNEQDRKEILL 160 (541)
Q Consensus 83 ~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~-~~-~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~ 160 (541)
+|.+....+ ..|+-.++ ++.+++|++|. +| -.++.+|++ |+ .+|.+.....+....||.
T Consensus 231 iHRFNksQQ------------D~fLP~VE----~G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 231 IHRFNKSQQ------------DTFLPHVE----NGDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILM 291 (554)
T ss_pred hhhhhhhhh------------hcccceec----cCceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHH
Confidence 999854432 25555544 56688888765 34 358899998 88 488889999999999998
Q ss_pred HHHhcCCC------CCC-----CCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccc
Q psy7673 161 ALTKQGKD------PMM-----GEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTI 229 (541)
Q Consensus 161 ~~~~~~~~------~~~-----~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i 229 (541)
+-+...+. ... .++..++.++ ..++|- .|-..+.++.+......|.- ......+
T Consensus 292 raia~l~dser~~~~l~n~s~~ve~siidyla--~lsdGD-aR~aLN~Lems~~m~~tr~g------------~~~~~~l 356 (554)
T KOG2028|consen 292 RAIASLGDSERPTDPLPNSSMFVEDSIIDYLA--YLSDGD-ARAALNALEMSLSMFCTRSG------------QSSRVLL 356 (554)
T ss_pred HHHHhhccccccCCCCCCcchhhhHHHHHHHH--HhcCch-HHHHHHHHHHHHHHHHhhcC------------Cccccee
Confidence 85552221 111 1122244444 445552 22222333333333332211 1123569
Q ss_pred CHHHHHHHHHhc
Q psy7673 230 GFRHFDIALKRI 241 (541)
Q Consensus 230 ~~~d~~~al~~~ 241 (541)
+.+|++++|+.-
T Consensus 357 SidDvke~lq~s 368 (554)
T KOG2028|consen 357 SIDDVKEGLQRS 368 (554)
T ss_pred cHHHHHHHHhhc
Confidence 999999999854
No 125
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4.4e-13 Score=133.34 Aligned_cols=182 Identities=19% Similarity=0.218 Sum_probs=121.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQCF 67 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~~ 67 (541)
.+.+..+||+||+|+|||++++++++.+.+. +++++..+ ......++.+.
T Consensus 35 ~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~ 108 (363)
T PRK14961 35 GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREIL 108 (363)
T ss_pred CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHH
Confidence 3566678999999999999999999988532 22222111 01223355555
Q ss_pred HHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCe
Q psy7673 68 QRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 68 ~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 143 (541)
..+.. ....|++|||+|.+.. ...+.|++.++.. ..++.+|.+|+.++.+.+.+++ |+ .
T Consensus 109 ~~~~~~p~~~~~kviIIDEa~~l~~------------~a~naLLk~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~ 171 (363)
T PRK14961 109 DNIYYSPSKSRFKVYLIDEVHMLSR------------HSFNALLKTLEEP--PQHIKFILATTDVEKIPKTILS--RC-L 171 (363)
T ss_pred HHHhcCcccCCceEEEEEChhhcCH------------HHHHHHHHHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-e
Confidence 54432 2346999999998832 3456788888753 3345677777777889999988 87 5
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCC
Q psy7673 144 ILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDD 223 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~ 223 (541)
.++|++|+.++..++++..+...+.. .++..+..++ ..+.| ++|++.++++.+.... .
T Consensus 172 ~~~~~~l~~~el~~~L~~~~~~~g~~--i~~~al~~ia--~~s~G-~~R~al~~l~~~~~~~----~------------- 229 (363)
T PRK14961 172 QFKLKIISEEKIFNFLKYILIKESID--TDEYALKLIA--YHAHG-SMRDALNLLEHAINLG----K------------- 229 (363)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHHhc----C-------------
Confidence 89999999999999999998875321 1222344445 45555 7888888887764321 0
Q ss_pred ccccccCHHHHHHHHHhc
Q psy7673 224 TEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 224 ~~~~~i~~~d~~~al~~~ 241 (541)
..|+.+++.+++...
T Consensus 230 ---~~It~~~v~~~l~~~ 244 (363)
T PRK14961 230 ---GNINIKNVTDMLGLL 244 (363)
T ss_pred ---CCCCHHHHHHHHCCC
Confidence 237888888877543
No 126
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=4.6e-13 Score=138.53 Aligned_cols=166 Identities=19% Similarity=0.244 Sum_probs=116.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
..+.+.++||+||+|+|||++++.+++.+++. +++++..+ ......++.+
T Consensus 34 ~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRel 107 (709)
T PRK08691 34 EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREV 107 (709)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccc------cCCHHHHHHH
Confidence 35667789999999999999999999987542 12222211 1122345555
Q ss_pred HHHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
+..+. ..+..|++|||+|.+. ....+.|++.|+.. ...+.+|.+|+.+..+.+.+++ |+
T Consensus 108 le~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLKtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC- 170 (709)
T PRK08691 108 LENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLKTLEEP--PEHVKFILATTDPHKVPVTVLS--RC- 170 (709)
T ss_pred HHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHHHHHhC--CCCcEEEEEeCCccccchHHHH--HH-
Confidence 55432 2344799999999873 23456888888853 3456777788888889999887 88
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQ 204 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~ 204 (541)
..|.|+.++.++...+|+.++...+.. .++..+..++ +.+.| +.|++.++++.+...
T Consensus 171 ~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia--~~A~G-slRdAlnLLDqaia~ 227 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLG--RAAAG-SMRDALSLLDQAIAL 227 (709)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHH--HHhCC-CHHHHHHHHHHHHHh
Confidence 478899999999999999999976421 1222345555 55555 789999999887553
No 127
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=7.7e-13 Score=130.99 Aligned_cols=193 Identities=23% Similarity=0.295 Sum_probs=128.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc-cccCch-HHHHHHHHHH----HHhcCCceEEEcCCccccC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN-MYLGES-ERAVRQCFQR----ARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~-~~~~~~-~~~~~~~~~~----~~~~~~~il~iDe~d~l~~ 88 (541)
..++||+||||||||++++++|..++.++..+++..+.. .|.+.. ...+...+.. .....++||||||+|.+.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 358999999999999999999999999999999988753 355653 3334444332 2234678999999999987
Q ss_pred CCCCCCC--CChhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCC---------------------------
Q psy7673 89 KRSSLGD--NNSSMRIVNQLLTEMDGFE-----------GRGGVFLMAATNRP--------------------------- 128 (541)
Q Consensus 89 ~~~~~~~--~~~~~~~~~~l~~~l~~~~-----------~~~~~~vi~t~~~~--------------------------- 128 (541)
+...... ...-..+++.|++.+++.. +..+.++|.|+|-.
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~ 275 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGA 275 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccc
Confidence 5432111 1111257778888886532 12346777777750
Q ss_pred C-----------------------CCCccccCCCCCCeEEEecCCCHHHHHHHHHHH----HhcC-------CCCCCCCC
Q psy7673 129 D-----------------------IIDPAVMRPGRFDRILFVNLPNEQDRKEILLAL----TKQG-------KDPMMGED 174 (541)
Q Consensus 129 ~-----------------------~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~----~~~~-------~~~~~~~~ 174 (541)
+ -+.|+|+. |++.++.|.+.+.+++.+|+... +..+ +.....++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~ 353 (413)
T TIGR00382 276 EVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEE 353 (413)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECH
Confidence 0 02355554 99999999999999999998763 3221 11111112
Q ss_pred CCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy7673 175 VDFDKIAADERCEGFSGADLEQLVKEAREQAILEI 209 (541)
Q Consensus 175 ~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~ 209 (541)
-..+.++.......+.+|.|+.++++.......+.
T Consensus 354 ~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 354 EALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 22455564345667889999999999887776554
No 128
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.2e-12 Score=134.31 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=111.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEEeCccccccccCchHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGI------------------------NFISVKGPELLNMYLGESERAVRQCF 67 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~------------------------~~~~i~~~~l~~~~~~~~~~~~~~~~ 67 (541)
.+.+..+||+||+|+|||++++.+|+.+.+ .+++++...- .....++.+.
T Consensus 35 ~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii 108 (546)
T PRK14957 35 QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR------TGVEETKEIL 108 (546)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHH
Confidence 355667999999999999999999998754 2333332111 1112334444
Q ss_pred HHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCe
Q psy7673 68 QRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 68 ~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 143 (541)
..+. .....|++|||+|.+.. ...+.|++.+++. ...+.+|.+|+++..+.+.+++ |+ .
T Consensus 109 ~~~~~~p~~g~~kViIIDEa~~ls~------------~a~naLLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~ 171 (546)
T PRK14957 109 DNIQYMPSQGRYKVYLIDEVHMLSK------------QSFNALLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-I 171 (546)
T ss_pred HHHHhhhhcCCcEEEEEechhhccH------------HHHHHHHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-e
Confidence 4333 23457999999999842 3567888888853 3446677677778888888888 88 5
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
.++|..++.++....++..+...+. ..++..+..++ ..+.| +.|++.++++.+..
T Consensus 172 ~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia--~~s~G-dlR~alnlLek~i~ 226 (546)
T PRK14957 172 QLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIA--YHAKG-SLRDALSLLDQAIS 226 (546)
T ss_pred eEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHH--HHcCC-CHHHHHHHHHHHHH
Confidence 8999999999999999999887542 12222344445 44544 77888888887753
No 129
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.47 E-value=6.2e-13 Score=129.88 Aligned_cols=195 Identities=16% Similarity=0.278 Sum_probs=140.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
...-++|||++|+|||+|+++++++. +..++++...++..++.......-..-|.+.. +-.+|+|||++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 45679999999999999999999987 45788888888876665554444444455544 447999999999976
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---CccccCCCCCC--eEEEecCCCHHHHHHHHHHHH
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDII---DPAVMRPGRFD--RILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l---~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~ 163 (541)
+. +....|+..+..+....+.+|+.+...|..+ .+.|++ ||. ..+.+.+|+.+.|..||+..+
T Consensus 190 k~----------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 190 KE----------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred Ch----------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 53 2345777777766666666777777777654 488888 875 778899999999999999988
Q ss_pred hcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCC
Q psy7673 164 KQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKP 243 (541)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 243 (541)
+..+.. +.++ -...++ ..... +.+++..++++....+.... ..||.+.+.++|+....
T Consensus 258 ~~~~~~-i~~e-v~~~la--~~~~~-nvReLegaL~~l~~~a~~~~-----------------~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 258 EDRGIE-IPDE-VLEFLA--KRLDR-NVRELEGALNRLDAFALFTK-----------------RAITIDLVKEILKDLLR 315 (408)
T ss_pred HhcCCC-CCHH-HHHHHH--HHhhc-cHHHHHHHHHHHHHHHHhcC-----------------ccCcHHHHHHHHHHhhc
Confidence 865422 2222 245555 43333 67888888888776665332 24888888888887655
Q ss_pred C
Q psy7673 244 S 244 (541)
Q Consensus 244 ~ 244 (541)
.
T Consensus 316 ~ 316 (408)
T COG0593 316 A 316 (408)
T ss_pred c
Confidence 4
No 130
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=6.5e-13 Score=137.98 Aligned_cols=165 Identities=19% Similarity=0.229 Sum_probs=114.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------------EEEEeCccccccccCchHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN-----------------------------FISVKGPELLNMYLGESER 61 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~-----------------------------~~~i~~~~l~~~~~~~~~~ 61 (541)
..+.+..+||+||+|+|||++++.+|+.+++. +++++..+ .....
T Consensus 34 ~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd 107 (618)
T PRK14951 34 QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVD 107 (618)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc------ccCHH
Confidence 34566778999999999999999999988642 22222211 11223
Q ss_pred HHHHHHHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccC
Q psy7673 62 AVRQCFQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMR 137 (541)
Q Consensus 62 ~~~~~~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~ 137 (541)
.++.+.+.+.. .+..|++|||+|.|.. ...+.|++.+++. ...+.+|.+|+++..+.+.+++
T Consensus 108 ~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~------------~a~NaLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS 173 (618)
T PRK14951 108 EVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN------------TAFNAMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS 173 (618)
T ss_pred HHHHHHHHHHhCcccCCceEEEEEChhhCCH------------HHHHHHHHhcccC--CCCeEEEEEECCchhhhHHHHH
Confidence 45555554432 2346999999999843 3467888888853 3456777777888888888888
Q ss_pred CCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 138 PGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 138 ~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
|+ ..++|..++.++..+.++..+...+.. .++..+..++ +.+.| +.+++.++++++..
T Consensus 174 --Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La--~~s~G-slR~al~lLdq~ia 231 (618)
T PRK14951 174 --RC-LQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLA--RAARG-SMRDALSLTDQAIA 231 (618)
T ss_pred --hc-eeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHH
Confidence 87 589999999999999999998875421 1222345555 55566 78888888876654
No 131
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.46 E-value=1.7e-12 Score=114.62 Aligned_cols=175 Identities=20% Similarity=0.283 Sum_probs=124.8
Q ss_pred hhhc-CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhc-CCceEEEc
Q psy7673 7 PKLF-GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNS-QPCVIFFD 81 (541)
Q Consensus 7 ~~~~-~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~il~iD 81 (541)
++.| .+.+..++||+|..|||||+++|++.+++ +..+++|+..++. .+-.+++..+.. .+-|||+|
T Consensus 76 T~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~---------~Lp~l~~~Lr~~~~kFIlFcD 146 (287)
T COG2607 76 TEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA---------TLPDLVELLRARPEKFILFCD 146 (287)
T ss_pred HHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh---------hHHHHHHHHhcCCceEEEEec
Confidence 3344 56788899999999999999999999888 7889999988773 344555555543 34688899
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHHHHhcCCC--CCCCeEEEEecCCCCCCCccc--------------------cCCC
Q psy7673 82 EIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--GRGGVFLMAATNRPDIIDPAV--------------------MRPG 139 (541)
Q Consensus 82 e~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~vi~t~~~~~~l~~~l--------------------~~~~ 139 (541)
|+-- +........|...|++-. .+.||+|.+|+|+...|++.+ .-+.
T Consensus 147 DLSF-----------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSD 215 (287)
T COG2607 147 DLSF-----------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSD 215 (287)
T ss_pred CCCC-----------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhh
Confidence 8732 112223345666666542 355799999999876554211 1146
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHH
Q psy7673 140 RFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEA 201 (541)
Q Consensus 140 r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a 201 (541)
||...+.|.+++.++...|+.+++...+.....+..+.+.+..+....|-|+|-..+.++..
T Consensus 216 RFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 216 RFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred hcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHHH
Confidence 99999999999999999999999998765443444555666665666778888777766543
No 132
>PRK06620 hypothetical protein; Validated
Probab=99.44 E-value=1e-12 Score=120.08 Aligned_cols=165 Identities=15% Similarity=0.211 Sum_probs=105.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGD 95 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~ 95 (541)
+.++||||+||||||+++++++..+..++ ..... ....+ ....+|+|||+|.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 67999999999999999999988765322 21110 00111 123799999999541
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCccccCCCCCC--eEEEecCCCHHHHHHHHHHHHhcCCCCCC
Q psy7673 96 NNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI--IDPAVMRPGRFD--RILFVNLPNEQDRKEILLALTKQGKDPMM 171 (541)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~--l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~~~~~~~~~ 171 (541)
. ..|...++.+...++.+|++++..|.. + +++++ |+. ..+.+++|+.+++..+++..+.... ..+
T Consensus 99 ----~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~-l~l 167 (214)
T PRK06620 99 ----E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISS-VTI 167 (214)
T ss_pred ----H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcC-CCC
Confidence 1 134444443334556677777776654 5 77888 774 5799999999999999999888542 122
Q ss_pred CCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHH
Q psy7673 172 GEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIAL 238 (541)
Q Consensus 172 ~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 238 (541)
.++ ..+.++ +...+ +.+.+..+++.....+... ...||.+.+++++
T Consensus 168 ~~e-v~~~L~--~~~~~-d~r~l~~~l~~l~~~~~~~-----------------~~~it~~~~~~~l 213 (214)
T PRK06620 168 SRQ-IIDFLL--VNLPR-EYSKIIEILENINYFALIS-----------------KRKITISLVKEVL 213 (214)
T ss_pred CHH-HHHHHH--HHccC-CHHHHHHHHHHHHHHHHHc-----------------CCCCCHHHHHHHh
Confidence 222 245555 44544 6777777777743322211 1247888877765
No 133
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.1e-12 Score=135.75 Aligned_cols=164 Identities=22% Similarity=0.249 Sum_probs=114.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQCF 67 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~~ 67 (541)
.+.+..+||+||+|+|||++++.+++.+++. +++++... ......++.+.
T Consensus 35 ~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~ 108 (527)
T PRK14969 35 QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELL 108 (527)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHH
Confidence 4566678999999999999999999998542 22222211 11233455555
Q ss_pred HHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCe
Q psy7673 68 QRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 68 ~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 143 (541)
..+.. ....|++|||+|.+.. ...+.|++.+++. ...+.+|.+|++++.+.+.+++ |+ .
T Consensus 109 ~~~~~~p~~~~~kVvIIDEad~ls~------------~a~naLLK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~ 171 (527)
T PRK14969 109 DNAQYAPTRGRFKVYIIDEVHMLSK------------SAFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-L 171 (527)
T ss_pred HHHhhCcccCCceEEEEcCcccCCH------------HHHHHHHHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-H
Confidence 55432 2346999999998842 3457888888863 3456777777878888888887 77 5
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
.++|+.++.++....++..+...+.. .+...+..++ +.+.| +.+++.++++.+..
T Consensus 172 ~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la--~~s~G-slr~al~lldqai~ 226 (527)
T PRK14969 172 QFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLA--RAAAG-SMRDALSLLDQAIA 226 (527)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHH
Confidence 89999999999999999988765311 1222234445 45555 78888888887754
No 134
>PLN03025 replication factor C subunit; Provisional
Probab=99.43 E-value=7.7e-12 Score=122.57 Aligned_cols=131 Identities=20% Similarity=0.259 Sum_probs=92.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEeCccccccccCchHHHHHHHHHHHH-------hcCCceEEEc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAG-----INFISVKGPELLNMYLGESERAVRQCFQRAR-------NSQPCVIFFD 81 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~-----~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~il~iD 81 (541)
...++||+||||||||++++++|+++. ..+++++.++..+. ..++....... .....+++||
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiD 106 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILD 106 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEe
Confidence 345799999999999999999999872 34667776654221 12222222111 1235799999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHH
Q psy7673 82 EIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLA 161 (541)
Q Consensus 82 e~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~ 161 (541)
|+|.+... ..+.|...++..... ..+|.++|....+.+++++ |+ ..+.|+.|+.++....++.
T Consensus 107 E~d~lt~~------------aq~aL~~~lE~~~~~--t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~ 169 (319)
T PLN03025 107 EADSMTSG------------AQQALRRTMEIYSNT--TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMK 169 (319)
T ss_pred chhhcCHH------------HHHHHHHHHhcccCC--ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHH
Confidence 99998532 345677777654333 4566778877888889998 87 4899999999999999999
Q ss_pred HHhcCC
Q psy7673 162 LTKQGK 167 (541)
Q Consensus 162 ~~~~~~ 167 (541)
.+...+
T Consensus 170 i~~~eg 175 (319)
T PLN03025 170 VVEAEK 175 (319)
T ss_pred HHHHcC
Confidence 998754
No 135
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.43 E-value=2.3e-12 Score=122.27 Aligned_cols=134 Identities=24% Similarity=0.304 Sum_probs=93.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc------cccccCchHH-HHHH-------------------HH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL------LNMYLGESER-AVRQ-------------------CF 67 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l------~~~~~~~~~~-~~~~-------------------~~ 67 (541)
.+..+||+||||||||++|+++++.++.+++.++|..- ++.+.+.... .... .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 45689999999999999999999999999999998642 2222211111 0110 11
Q ss_pred HHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC--------------CCCCeEEEEecCCCC----
Q psy7673 68 QRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--------------GRGGVFLMAATNRPD---- 129 (541)
Q Consensus 68 ~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------------~~~~~~vi~t~~~~~---- 129 (541)
..+.. ...+|+|||++.+.+ ..++.|+..+++-. .+.++.||+|+|...
T Consensus 100 ~~A~~-~g~~lllDEi~r~~~------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TLAVR-EGFTLVYDEFTRSKP------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHH-cCCEEEEcchhhCCH------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 11112 347999999998743 34556666665421 123678999999752
Q ss_pred -CCCccccCCCCCCeEEEecCCCHHHHHHHHHHHH
Q psy7673 130 -IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 130 -~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~ 163 (541)
.+++++++ || ..+.++.|+.++..+|++..+
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56888988 88 578999999999999998875
No 136
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.5e-12 Score=132.62 Aligned_cols=162 Identities=19% Similarity=0.220 Sum_probs=109.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQCF 67 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~~ 67 (541)
.+.+.++||+||+|+|||++++.+|+.+.+. +++++...- .....++.+.
T Consensus 35 ~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~ 108 (624)
T PRK14959 35 NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLK 108 (624)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHH
Confidence 3556789999999999999999999988542 333433211 0112223322
Q ss_pred HHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCe
Q psy7673 68 QRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 68 ~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 143 (541)
..+. .....||+|||+|.+. ...++.|++.++.. ..++++|.+|+.+..+.+.+++ |+.
T Consensus 109 ~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq- 171 (624)
T PRK14959 109 EAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ- 171 (624)
T ss_pred HHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-
Confidence 2221 2345799999999984 23457888888753 3457888888888888888888 874
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEA 201 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a 201 (541)
.|.|+.++.++...+|+..+...+.. .+...+..++ +.+.| +.+++.++++++
T Consensus 172 ~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA--~~s~G-dlR~Al~lLeql 224 (624)
T PRK14959 172 HFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIA--RRAAG-SVRDSMSLLGQV 224 (624)
T ss_pred ccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHH
Confidence 78999999999999999988865321 1222244444 45555 567777777654
No 137
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=7.4e-12 Score=134.80 Aligned_cols=164 Identities=20% Similarity=0.202 Sum_probs=111.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc--------------------------EEEEeCccccccccCchHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN--------------------------FISVKGPELLNMYLGESERAVR 64 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~--------------------------~~~i~~~~l~~~~~~~~~~~~~ 64 (541)
..+.+..+||+||+|||||++++.+++.+.+. +++++..+. .....++
T Consensus 33 ~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR 106 (824)
T PRK07764 33 SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH------GGVDDAR 106 (824)
T ss_pred hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHH
Confidence 34566679999999999999999999998542 222222111 0112233
Q ss_pred HHHHH----HHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCC
Q psy7673 65 QCFQR----ARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGR 140 (541)
Q Consensus 65 ~~~~~----~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r 140 (541)
.+... .......|+||||+|.|.. ...+.|++.|++.. .+++||.+|+.++.|.+.|++ |
T Consensus 107 ~l~~~~~~~p~~~~~KV~IIDEad~lt~------------~a~NaLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--R 170 (824)
T PRK07764 107 ELRERAFFAPAESRYKIFIIDEAHMVTP------------QGFNALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--R 170 (824)
T ss_pred HHHHHHHhchhcCCceEEEEechhhcCH------------HHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--h
Confidence 33222 2234567999999999942 45678999998643 356777777888888889998 8
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 141 FDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 141 ~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
+ ..+.|..++.++..++|+.++...+.. .++..+..++ +...| +.+++.+++++..
T Consensus 171 c-~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa--~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 171 T-HHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVI--RAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred e-eEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHH
Confidence 7 589999999999999999999875421 1222233444 44444 7788888887765
No 138
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.42 E-value=1.2e-11 Score=129.77 Aligned_cols=237 Identities=16% Similarity=0.147 Sum_probs=143.0
Q ss_pred ccccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc-EEEEecCceeEeeCEEEEcCChhHHHh-hhcccC-c-
Q psy7673 294 SVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG-VKVTLNNDQHIEANHVVSALPAPKLGM-LLHKQH-P- 368 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~t~P~~~~~~-ll~~~~-~- 368 (541)
..|...||+..+.++|++.+ ..|++|+++++|++|..++++ |.|.+.+|+.+.||+||+|+|++.+.. |+++.. +
T Consensus 210 g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~ 289 (502)
T TIGR02734 210 GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRR 289 (502)
T ss_pred eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCcccccc
Confidence 45778999999999999998 568899999999999987655 678888888899999999999977765 444321 1
Q ss_pred hhHhhhcCCC-CccEEEEEEeeCC---CCCCCCccEEEecCCC--------------CCCceEEEeecccc---cCCCcE
Q psy7673 369 TLGNLLSSIE-HVNVAVINLAYEN---IPMKQNAFGFLVPPRE--------------KLPILGVVFDSCCF---EQADWT 427 (541)
Q Consensus 369 ~~~~~l~~~~-~~~~~~v~l~~~~---~~~~~~~~g~l~~~~~--------------~~~~~~~~~~s~~~---~~~~~~ 427 (541)
...+.+++.. ..++++++++++. .......+.+++..+. ..+...+...|... .+.+..
T Consensus 290 ~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~ 369 (502)
T TIGR02734 290 YPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCE 369 (502)
T ss_pred ccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCc
Confidence 2233444444 5678888999973 2211222233332111 12233333333322 224555
Q ss_pred EEEEEecCccC----CcccCCCCHHHHHHHHHHHHHhH-c-CCCCCCceeEe----------eeccCCCCCCCCCHHHH-
Q psy7673 428 ILTVMMGGAWY----DTYFKGQSKEYILDIACRYVHEI-L-DMPRTPHAQHV----------EILKACIPQYTLGHAAR- 490 (541)
Q Consensus 428 ~l~~~~~g~~~----~~~~~~~~~e~~~~~~~~~l~~~-~-g~~~~~~~~~~----------~~w~~a~p~~~~g~~~~- 490 (541)
.+++++...+. .+|. ...+++.+.+++.|++. + +.....+...+ ..+.+++ |...+...
T Consensus 370 ~~~~~~~~~~~~~~~~~~~--~~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~--~G~~~~~~q 445 (502)
T TIGR02734 370 NLYVLAPVPHLGTADVDWS--VEGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSA--FSLEHTLTQ 445 (502)
T ss_pred cEEEEEeCCCCCCCCCCcH--HHHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccc--cchhhchhh
Confidence 55555533321 1121 23567889999999887 5 33322322222 1222222 22211100
Q ss_pred HHHHHHH-HhhCCCCEEEEcCCCC-CCChHHHHHHHHHHHHHHhhh
Q psy7673 491 VKDIQGY-IDTHQLPLYLTGSSYD-GVGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 491 ~~~~~~~-l~~~~~~l~laG~~~~-g~~v~~ai~sg~~aa~~i~~~ 534 (541)
...++.. ..++.+|||+||+|.. |.|+++|+.||+.+|+.|+..
T Consensus 446 ~~~~rp~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~ 491 (502)
T TIGR02734 446 SAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGD 491 (502)
T ss_pred cccCCCCCCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 0001100 1235679999999995 789999999999999999654
No 139
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=3.4e-12 Score=133.09 Aligned_cols=165 Identities=22% Similarity=0.269 Sum_probs=116.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGI------------------------NFISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~------------------------~~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
..+.+..+||+||+|||||++++.+|+.+.+ ++++++..+ ......++.+
T Consensus 34 ~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i 107 (559)
T PRK05563 34 QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDI 107 (559)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHH
Confidence 3456777999999999999999999998743 233443321 1223445566
Q ss_pred HHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
.+.+.. ....|++|||+|.|.. ...+.|++.++.. +..+++|.+|+.++.+++.+++ |+.
T Consensus 108 ~~~v~~~p~~~~~kViIIDE~~~Lt~------------~a~naLLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~ 171 (559)
T PRK05563 108 RDKVKYAPSEAKYKVYIIDEVHMLST------------GAFNALLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ 171 (559)
T ss_pred HHHHhhCcccCCeEEEEEECcccCCH------------HHHHHHHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe
Confidence 555442 3457999999999842 3467888888853 3456777777788899999998 884
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
.+.|..|+.++...+++..+...+.. .++..+..++ ..+.| +.+++.++++.+..
T Consensus 172 -~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia--~~s~G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 172 -RFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIA--RAAEG-GMRDALSILDQAIS 226 (559)
T ss_pred -EEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHH
Confidence 78999999999999999999875421 1222344455 55555 78888888877644
No 140
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.2e-11 Score=128.33 Aligned_cols=164 Identities=18% Similarity=0.226 Sum_probs=112.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc--------------------------EEEEeCccccccccCchHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN--------------------------FISVKGPELLNMYLGESERAVRQ 65 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~--------------------------~~~i~~~~l~~~~~~~~~~~~~~ 65 (541)
.+.+..+||+||+|||||++++.+|+.+.+. +++++..+. .....++.
T Consensus 32 ~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRe 105 (584)
T PRK14952 32 GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH------GGVDDTRE 105 (584)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc------cCHHHHHH
Confidence 3455668999999999999999999987532 222322211 11223333
Q ss_pred HHHHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCC
Q psy7673 66 CFQRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRF 141 (541)
Q Consensus 66 ~~~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~ 141 (541)
+.+.+. .....|++|||+|.|.. ...+.|++.|+.. ..++++|.+|+.++.+.+.+++ |+
T Consensus 106 l~~~~~~~P~~~~~KVvIIDEah~Lt~------------~A~NALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc 169 (584)
T PRK14952 106 LRDRAFYAPAQSRYRIFIVDEAHMVTT------------AGFNALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT 169 (584)
T ss_pred HHHHHHhhhhcCCceEEEEECCCcCCH------------HHHHHHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc
Confidence 333332 23457999999999842 3567889998853 3457777777888899999998 86
Q ss_pred CeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 142 DRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
..++|..++.++..++++.++...+.. .++..+..++ ..+ +-+.|++.++++....
T Consensus 170 -~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia--~~s-~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 170 -HHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVI--RAG-GGSPRDTLSVLDQLLA 225 (584)
T ss_pred -eEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHc-CCCHHHHHHHHHHHHh
Confidence 589999999999999999999875421 1222233344 334 4478888888887643
No 141
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.41 E-value=2.3e-12 Score=137.02 Aligned_cols=161 Identities=22% Similarity=0.330 Sum_probs=105.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHH----H-hcCCceEEEcCCcccc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRA----R-NSQPCVIFFDEIDALC 87 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~----~-~~~~~il~iDe~d~l~ 87 (541)
....+++|+||||||||++++++++.++.+++.+++.... . ..++..+..+ . .....+|||||+|.+.
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~---i----~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln 122 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG---V----KDLRAEVDRAKERLERHGKRTILFIDEVHRFN 122 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh---h----HHHHHHHHHHHHHhhhcCCceEEEEeChhhCC
Confidence 3445899999999999999999999999999998875321 1 1122222222 1 1235799999999984
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC--CCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhc
Q psy7673 88 PKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR--PDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQ 165 (541)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~--~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~ 165 (541)
.. ..+.|+..++ ...+++|++|+. ...+++++++ |+ ..+.|++++.+++..+++..+..
T Consensus 123 ~~------------qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~ 183 (725)
T PRK13341 123 KA------------QQDALLPWVE----NGTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQD 183 (725)
T ss_pred HH------------HHHHHHHHhc----CceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHH
Confidence 22 2345666555 345667765543 2468889988 75 47899999999999999998873
Q ss_pred CCC-----CCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 166 GKD-----PMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 166 ~~~-----~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
... ....++-.+..++ +...| ..|.+.++++.+.
T Consensus 184 ~~~~~g~~~v~I~deaL~~La--~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 184 KERGYGDRKVDLEPEAEKHLV--DVANG-DARSLLNALELAV 222 (725)
T ss_pred HHhhcCCcccCCCHHHHHHHH--HhCCC-CHHHHHHHHHHHH
Confidence 110 0111112244444 44444 5667777776654
No 142
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=8.2e-12 Score=128.10 Aligned_cols=163 Identities=20% Similarity=0.272 Sum_probs=110.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----------------------cEEEEeCccccccccCchHHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGI-----------------------NFISVKGPELLNMYLGESERAVRQCFQ 68 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~-----------------------~~~~i~~~~l~~~~~~~~~~~~~~~~~ 68 (541)
.+.+..+||+||||||||++++++++.+.+ .+++++..+ ......++.+..
T Consensus 33 ~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~ 106 (504)
T PRK14963 33 GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLRE 106 (504)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHH
Confidence 445666799999999999999999998843 133444321 111233444433
Q ss_pred HHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeE
Q psy7673 69 RARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRI 144 (541)
Q Consensus 69 ~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~ 144 (541)
.+.. ..+.||+|||+|.+. ...++.|++.++.. ..++++|.+++.+..+.+.+++ |+. .
T Consensus 107 ~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~ 169 (504)
T PRK14963 107 KVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-H 169 (504)
T ss_pred HHhhccccCCCeEEEEECccccC------------HHHHHHHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-E
Confidence 3322 345799999998773 24567788888753 3356777778888889999988 774 7
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 145 LFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 145 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
+.|..|+.++....++..+...+... ++-.+..++ ..+.| ..+++.++++.+.
T Consensus 170 ~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia--~~s~G-dlR~aln~Lekl~ 222 (504)
T PRK14963 170 FRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVA--RLADG-AMRDAESLLERLL 222 (504)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHH--HHcCC-CHHHHHHHHHHHH
Confidence 99999999999999999998754221 222244455 45555 6677777777653
No 143
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.41 E-value=3.2e-12 Score=136.60 Aligned_cols=183 Identities=17% Similarity=0.268 Sum_probs=125.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccccc-----ccCch----H-HHHHHHHHHHHhcCCceEEEcCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-----YLGES----E-RAVRQCFQRARNSQPCVIFFDEI 83 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~-----~~~~~----~-~~~~~~~~~~~~~~~~il~iDe~ 83 (541)
|..++||+||||||||++++++|+.++.+++.++|+++... .+|.. . ..-..+....+....+||+|||+
T Consensus 487 p~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEi 566 (758)
T PRK11034 487 PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccH
Confidence 34579999999999999999999999999999999876431 12210 0 00112223334455689999999
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-------------------------C
Q psy7673 84 DALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP-------------------------D 129 (541)
Q Consensus 84 d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~-------------------------~ 129 (541)
|.+.+ .+++.|+..+++.. +..+.+||+|||.- .
T Consensus 567 eka~~------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 634 (758)
T PRK11034 567 EKAHP------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKK 634 (758)
T ss_pred hhhhH------------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHH
Confidence 99843 46678888887421 12457899999822 1
Q ss_pred CCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcC-------CCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 130 IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQG-------KDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 130 ~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
.+.|.|+. |++.++.|++.+.++..+|+..++... +.....++...+.++.......|.+|.|+.++++-.
T Consensus 635 ~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l 712 (758)
T PRK11034 635 IFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_pred hcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHH
Confidence 25577777 999999999999999999998776532 111112222244455334455677899999999888
Q ss_pred HHHHHHHh
Q psy7673 203 EQAILEIV 210 (541)
Q Consensus 203 ~~a~~~~~ 210 (541)
...+.+..
T Consensus 713 ~~~la~~i 720 (758)
T PRK11034 713 KKPLANEL 720 (758)
T ss_pred HHHHHHHH
Confidence 87776643
No 144
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.40 E-value=1.5e-11 Score=122.40 Aligned_cols=184 Identities=21% Similarity=0.302 Sum_probs=113.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEeCcccccccc-------------Cc-------hHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAG-----INFISVKGPELLNMYL-------------GE-------SERAVRQCFQR 69 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~-----~~~~~i~~~~l~~~~~-------------~~-------~~~~~~~~~~~ 69 (541)
..+++|+||||||||++++++++++. .+++++++.++..... +. ....++.+...
T Consensus 36 ~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (337)
T PRK12402 36 LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKE 115 (337)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHH
Confidence 34799999999999999999999883 3578888877542210 00 11223333322
Q ss_pred HHh-----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeE
Q psy7673 70 ARN-----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRI 144 (541)
Q Consensus 70 ~~~-----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~ 144 (541)
... ..+.+|+|||+|.+.. ...+.|...++..... ..+|.+++.+..+.+.+++ |+ ..
T Consensus 116 ~~~~~~~~~~~~vlilDe~~~l~~------------~~~~~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~ 178 (337)
T PRK12402 116 YASYRPLSADYKTILLDNAEALRE------------DAQQALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LP 178 (337)
T ss_pred HHhcCCCCCCCcEEEEeCcccCCH------------HHHHHHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eE
Confidence 222 2346999999998842 2234566666644332 3455555556667778887 76 57
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCc
Q psy7673 145 LFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDT 224 (541)
Q Consensus 145 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~ 224 (541)
+.+.+|+.++...+++..+...+.. .++..+..++ ..+ +++++.+++.....+. . .
T Consensus 179 v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~--~~~----~gdlr~l~~~l~~~~~-~---~------------ 234 (337)
T PRK12402 179 LFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIA--YYA----GGDLRKAILTLQTAAL-A---A------------ 234 (337)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHc----CCCHHHHHHHHHHHHH-c---C------------
Confidence 8999999999999999998875422 1222344444 333 3355555444433221 0 0
Q ss_pred cccccCHHHHHHHHHhc
Q psy7673 225 EQVTIGFRHFDIALKRI 241 (541)
Q Consensus 225 ~~~~i~~~d~~~al~~~ 241 (541)
..|+.+++.+++...
T Consensus 235 --~~It~~~v~~~~~~~ 249 (337)
T PRK12402 235 --GEITMEAAYEALGDV 249 (337)
T ss_pred --CCCCHHHHHHHhCCC
Confidence 137888888776653
No 145
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.40 E-value=8.8e-13 Score=132.68 Aligned_cols=172 Identities=20% Similarity=0.226 Sum_probs=127.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEeCccccc------c----------ccCchHHHHHHHHHHHH--
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN--FISVKGPELLN------M----------YLGESERAVRQCFQRAR-- 71 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~--~~~i~~~~l~~------~----------~~~~~~~~~~~~~~~~~-- 71 (541)
.+...++||+||.|||||+++|.+|+.+++. ...-.|.+... . ........++.+.+.+.
T Consensus 35 ~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~ 114 (515)
T COG2812 35 GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYA 114 (515)
T ss_pred CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccC
Confidence 4567789999999999999999999988654 22112222110 0 01122344556655553
Q ss_pred --hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecC
Q psy7673 72 --NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNL 149 (541)
Q Consensus 72 --~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~ 149 (541)
..++.|.+|||+|.|. ....+.|++.+++ ++.++++|.+|..++.+++.++| |+. .+.|..
T Consensus 115 P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE--PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkr 177 (515)
T COG2812 115 PSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE--PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKR 177 (515)
T ss_pred CccccceEEEEecHHhhh------------HHHHHHHhccccc--CccCeEEEEecCCcCcCchhhhh--ccc-cccccC
Confidence 3456899999999984 4567899999884 56679999999999999999999 884 889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHH
Q psy7673 150 PNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 150 p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a 205 (541)
.+.++....|..++.+.+.. .++-.+..++ +...| +.||...+++.+....
T Consensus 178 i~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia--~~a~G-s~RDalslLDq~i~~~ 228 (515)
T COG2812 178 LDLEEIAKHLAAILDKEGIN--IEEDALSLIA--RAAEG-SLRDALSLLDQAIAFG 228 (515)
T ss_pred CCHHHHHHHHHHHHHhcCCc--cCHHHHHHHH--HHcCC-ChhhHHHHHHHHHHcc
Confidence 99999999999999986522 2333355556 66677 8899999999997664
No 146
>PRK09087 hypothetical protein; Validated
Probab=99.39 E-value=3.5e-12 Score=117.61 Aligned_cols=174 Identities=18% Similarity=0.183 Sum_probs=111.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLG 94 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~ 94 (541)
...++|+||+|+||||+++++++..+.. +++..++... .+..... .+|+|||+|.+..+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC-----
Confidence 4459999999999999999999876544 4454333211 1111111 58999999976211
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCccccCCCCCC--eEEEecCCCHHHHHHHHHHHHhcCCCC
Q psy7673 95 DNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI---IDPAVMRPGRFD--RILFVNLPNEQDRKEILLALTKQGKDP 169 (541)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~~~~~~~ 169 (541)
...|+..++......+.+||+++..|.. ..+.+++ |+. ..++++.|+.++|.++++..+.....
T Consensus 103 --------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~- 171 (226)
T PRK09087 103 --------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL- 171 (226)
T ss_pred --------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 1234555544444455566666665543 3678888 774 78999999999999999999987532
Q ss_pred CCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 170 MMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
.+.+ -.++.++ +...+ +.+.+..++++....+.... ..||...++++++.+
T Consensus 172 ~l~~-ev~~~La--~~~~r-~~~~l~~~l~~L~~~~~~~~-----------------~~it~~~~~~~l~~~ 222 (226)
T PRK09087 172 YVDP-HVVYYLV--SRMER-SLFAAQTIVDRLDRLALERK-----------------SRITRALAAEVLNEM 222 (226)
T ss_pred CCCH-HHHHHHH--HHhhh-hHHHHHHHHHHHHHHHHHhC-----------------CCCCHHHHHHHHHhh
Confidence 2222 2355556 44444 55566666555544443221 348899999998765
No 147
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.38 E-value=7.9e-13 Score=125.74 Aligned_cols=139 Identities=20% Similarity=0.256 Sum_probs=99.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccccc--ccCchHHH----------HHHHHHHHHhcCCceE
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM--YLGESERA----------VRQCFQRARNSQPCVI 78 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~--~~~~~~~~----------~~~~~~~~~~~~~~il 78 (541)
+....++|||.|+||||||++++.+|+.++++++.++|...... ..|..... ....+..+.. .+.+|
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~il 138 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVAL 138 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEE
Confidence 55567889999999999999999999999999999998765443 23321100 1112233322 34789
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcC------------CCCCCCeEEEEecCCCC------------CCCcc
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDG------------FEGRGGVFLMAATNRPD------------IIDPA 134 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~------------~~~~~~~~vi~t~~~~~------------~l~~~ 134 (541)
++||+|...++ .+..|...|+. +..++.+.||+|.|..+ .++++
T Consensus 139 llDEin~a~p~------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A 206 (327)
T TIGR01650 139 CFDEYDAGRPD------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQA 206 (327)
T ss_pred EechhhccCHH------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHH
Confidence 99999987443 22333333331 12445689999999754 36889
Q ss_pred ccCCCCCCeEEEecCCCHHHHHHHHHHHHh
Q psy7673 135 VMRPGRFDRILFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 135 l~~~~r~~~~i~~~~p~~~~r~~il~~~~~ 164 (541)
+++ ||...+.+.+|+.++-.+|+.....
T Consensus 207 ~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 207 QMD--RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred HHh--heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 988 9988889999999999999987654
No 148
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.38 E-value=8.3e-12 Score=135.34 Aligned_cols=180 Identities=24% Similarity=0.358 Sum_probs=125.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccccc------------ccCchHHHHHHHHHHHHhcCCceEEEcC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM------------YLGESERAVRQCFQRARNSQPCVIFFDE 82 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~il~iDe 82 (541)
..++||+||+|||||++++++|+.++.+++.++++++... |.|... ...+...++....+||+|||
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDE 561 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDE 561 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEec
Confidence 3468999999999999999999999999999999876432 112111 11233344455668999999
Q ss_pred CccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCC------------------------
Q psy7673 83 IDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRPD------------------------ 129 (541)
Q Consensus 83 ~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~~------------------------ 129 (541)
+|.+.+ .+.+.|++.+++.. +..+.+||+|||...
T Consensus 562 ieka~~------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~ 629 (731)
T TIGR02639 562 IEKAHP------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIK 629 (731)
T ss_pred hhhcCH------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHH
Confidence 998853 45678888877531 124578999998531
Q ss_pred -CCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC-------CCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHH
Q psy7673 130 -IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD-------PMMGEDVDFDKIAADERCEGFSGADLEQLVKEA 201 (541)
Q Consensus 130 -~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a 201 (541)
.+.|.|+. |++.+|.|.+.+.++..+|++..+..... ....++...+.++.......|.+|.|+.++++.
T Consensus 630 ~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 630 KLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred hhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 24567776 99999999999999999999998764210 111122224445533345678889999999988
Q ss_pred HHHHHHHHh
Q psy7673 202 REQAILEIV 210 (541)
Q Consensus 202 ~~~a~~~~~ 210 (541)
....+.+..
T Consensus 708 ~~~~l~~~~ 716 (731)
T TIGR02639 708 IKKPLSDEI 716 (731)
T ss_pred hHHHHHHHH
Confidence 888766543
No 149
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.38 E-value=1.2e-11 Score=115.19 Aligned_cols=132 Identities=19% Similarity=0.175 Sum_probs=91.7
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC------------CCCCCCccccCCCCC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN------------RPDIIDPAVMRPGRF 141 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~------------~~~~l~~~l~~~~r~ 141 (541)
-|+||||||+|.|. -.....|-+.++.- -.+ ++|.+|| .|.-+|..|++ |+
T Consensus 291 VpGVLFIDEvHmLD------------IE~FsFlnrAlEse--~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl 353 (450)
T COG1224 291 VPGVLFIDEVHMLD------------IECFSFLNRALESE--LAP-IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL 353 (450)
T ss_pred ecceEEEechhhhh------------HHHHHHHHHHhhcc--cCc-EEEEEcCCceeeecccCCcCCCCCCHhhhh--he
Confidence 47899999999882 22344444455531 222 5555555 34568888888 77
Q ss_pred CeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCC
Q psy7673 142 DRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGI 221 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~ 221 (541)
.+|...+++.++.++|++..+....... ++..++.++ .....-|-|-..+|+.-|...|.++....
T Consensus 354 -lII~t~py~~~EireIi~iRa~ee~i~l--~~~Ale~L~--~ig~etSLRYa~qLL~pa~iiA~~rg~~~--------- 419 (450)
T COG1224 354 -LIISTRPYSREEIREIIRIRAKEEDIEL--SDDALEYLT--DIGEETSLRYAVQLLTPASIIAKRRGSKR--------- 419 (450)
T ss_pred -eEEecCCCCHHHHHHHHHHhhhhhcccc--CHHHHHHHH--hhchhhhHHHHHHhccHHHHHHHHhCCCe---------
Confidence 5889999999999999999998754221 222345555 55556677888888888888887775543
Q ss_pred CCccccccCHHHHHHHHHhcCC
Q psy7673 222 DDTEQVTIGFRHFDIALKRIKP 243 (541)
Q Consensus 222 ~~~~~~~i~~~d~~~al~~~~~ 243 (541)
+..+|+++|.+.+..
T Consensus 420 -------V~~~dVe~a~~lF~D 434 (450)
T COG1224 420 -------VEVEDVERAKELFLD 434 (450)
T ss_pred -------eehhHHHHHHHHHhh
Confidence 889999999887643
No 150
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.38 E-value=3.5e-12 Score=125.49 Aligned_cols=134 Identities=21% Similarity=0.310 Sum_probs=92.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHH-hcCCceEEEcCCccccCCC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRAR-NSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~il~iDe~d~l~~~~ 90 (541)
...+..+||+||+|+|||+++++++++++.+++++++.+ .. .......+........ ...+.+|+|||+|.+...
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~- 115 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA- 115 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-
Confidence 344556777999999999999999999999999999876 21 1221122222211111 124689999999987321
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHh
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~ 164 (541)
.....|...++... .+..+|.++|.+..+.+.+++ ||. .+.|+.|+.+++.++++.++.
T Consensus 116 ----------~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 116 ----------DAQRHLRSFMEAYS--KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred ----------HHHHHHHHHHHhcC--CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHH
Confidence 12234444455433 345788899988899999998 885 789999999999988776544
No 151
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=7.5e-12 Score=128.43 Aligned_cols=164 Identities=22% Similarity=0.286 Sum_probs=111.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGI------------------------NFISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~------------------------~~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
+.+.+.++||+||+|+|||++|+.+|+.+.+ .++++++.+ ......++.+
T Consensus 34 ~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReI 107 (605)
T PRK05896 34 NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNI 107 (605)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHH
Confidence 3456778999999999999999999998743 222222211 0112234555
Q ss_pred HHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
...+.. ....|++|||+|.+.. ...+.|+..++.. +..+++|.+|+.+..+.+.+++ |+.
T Consensus 108 i~~~~~~P~~~~~KVIIIDEad~Lt~------------~A~NaLLKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq 171 (605)
T PRK05896 108 IDNINYLPTTFKYKVYIIDEAHMLST------------SAWNALLKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ 171 (605)
T ss_pred HHHHHhchhhCCcEEEEEechHhCCH------------HHHHHHHHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh
Confidence 444432 2346999999999842 2456888888853 3456777777888899999998 875
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
.+.|.+++.++...+++..+...+.. . +...+..++ ..+.| +.+++.++++...
T Consensus 172 -~ieF~~Ls~~eL~~~L~~il~kegi~-I-s~eal~~La--~lS~G-dlR~AlnlLekL~ 225 (605)
T PRK05896 172 -RYNFKKLNNSELQELLKSIAKKEKIK-I-EDNAIDKIA--DLADG-SLRDGLSILDQLS 225 (605)
T ss_pred -hcccCCCCHHHHHHHHHHHHHHcCCC-C-CHHHHHHHH--HHcCC-cHHHHHHHHHHHH
Confidence 79999999999999999998865321 1 122234444 45555 6778888877643
No 152
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=7.5e-12 Score=131.21 Aligned_cols=166 Identities=18% Similarity=0.209 Sum_probs=115.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
..+.+..+||+||+|+|||++++.+++.+.+. +++++..+ ......++.+
T Consensus 34 ~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l 107 (576)
T PRK14965 34 TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS------NTGVDDIREL 107 (576)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHH
Confidence 34567778999999999999999999988542 23333221 1122345555
Q ss_pred HHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
...+.. ....|++|||+|.|.. ...+.|++.|++. ..+++||.+|+.++.|.+.+++ |+.
T Consensus 108 ~~~~~~~p~~~~~KVvIIdev~~Lt~------------~a~naLLk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~ 171 (576)
T PRK14965 108 RENVKYLPSRSRYKIFIIDEVHMLST------------NAFNALLKTLEEP--PPHVKFIFATTEPHKVPITILS--RCQ 171 (576)
T ss_pred HHHHHhccccCCceEEEEEChhhCCH------------HHHHHHHHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hhh
Confidence 554432 2346999999999842 3467899998853 4457788888888999999998 874
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQ 204 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~ 204 (541)
.++|..++.++....++..+...+.. .+.-.+..++ +.+.| +.+++.++++.+...
T Consensus 172 -~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la--~~a~G-~lr~al~~Ldqliay 227 (576)
T PRK14965 172 -RFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVA--RKGDG-SMRDSLSTLDQVLAF 227 (576)
T ss_pred -hhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHHh
Confidence 88999999999999999988875421 1222344445 45555 778888888766443
No 153
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=4.5e-11 Score=125.30 Aligned_cols=170 Identities=21% Similarity=0.238 Sum_probs=114.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE---EeCcccc---c---cc------cCchHHHHHHHHHHHHh---
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFIS---VKGPELL---N---MY------LGESERAVRQCFQRARN--- 72 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~---i~~~~l~---~---~~------~~~~~~~~~~~~~~~~~--- 72 (541)
..+.+..+||+||+|+|||++|+.+|+.+.+.-.. -.|.... + .+ .......++.+...+..
T Consensus 36 ~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~ 115 (725)
T PRK07133 36 SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPT 115 (725)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchh
Confidence 34567778999999999999999999988543110 0111110 0 00 00123345666655543
Q ss_pred -cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCC
Q psy7673 73 -SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPN 151 (541)
Q Consensus 73 -~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~ 151 (541)
....|++|||+|.+.. ...+.|+..|+. .+..+++|.+|+.++.|.+.+++ |+. .+.|.+++
T Consensus 116 ~g~~KV~IIDEa~~LT~------------~A~NALLKtLEE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~ 178 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK------------SAFNALLKTLEE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRIS 178 (725)
T ss_pred cCCCEEEEEEChhhCCH------------HHHHHHHHHhhc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCC
Confidence 3447999999999842 356788888885 34456777788888899999998 885 89999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 152 EQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 152 ~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
.++...+++..+...+.. .+...+..++ ..+.| +.+++.++++.+.
T Consensus 179 ~eeI~~~L~~il~kegI~--id~eAl~~LA--~lS~G-slR~AlslLekl~ 224 (725)
T PRK07133 179 EDEIVSRLEFILEKENIS--YEKNALKLIA--KLSSG-SLRDALSIAEQVS 224 (725)
T ss_pred HHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHH
Confidence 999999999988865311 1122244445 45555 6788888877764
No 154
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=1.3e-11 Score=122.54 Aligned_cols=135 Identities=20% Similarity=0.282 Sum_probs=90.5
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE-EEeCcc--------------c--cc-cccCchHHHHHHHHHHHH
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFI-SVKGPE--------------L--LN-MYLGESERAVRQCFQRAR 71 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~-~i~~~~--------------l--~~-~~~~~~~~~~~~~~~~~~ 71 (541)
++.+.+.++||+||+|+|||++++.+|+.+.+.-- ...|.. + .. .........++.++..+.
T Consensus 31 ~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~ 110 (394)
T PRK07940 31 AGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAA 110 (394)
T ss_pred cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHH
Confidence 34457889999999999999999999998744310 001110 0 00 000111234566666554
Q ss_pred h----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEe
Q psy7673 72 N----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFV 147 (541)
Q Consensus 72 ~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~ 147 (541)
. ....|++|||+|.+... ..+.|++.+++- ..+.++|.+|+.++.+.+.++| |+ ..+.|
T Consensus 111 ~~p~~~~~kViiIDead~m~~~------------aanaLLk~LEep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f 173 (394)
T PRK07940 111 RRPSTGRWRIVVIEDADRLTER------------AANALLKAVEEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVAL 173 (394)
T ss_pred hCcccCCcEEEEEechhhcCHH------------HHHHHHHHhhcC--CCCCeEEEEECChHHChHHHHh--hC-eEEEC
Confidence 3 23469999999999432 346788888853 3334555556668899999998 88 58999
Q ss_pred cCCCHHHHHHHHHH
Q psy7673 148 NLPNEQDRKEILLA 161 (541)
Q Consensus 148 ~~p~~~~r~~il~~ 161 (541)
++|+.++..++|..
T Consensus 174 ~~~~~~~i~~~L~~ 187 (394)
T PRK07940 174 RTPSVEAVAEVLVR 187 (394)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999998888763
No 155
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.6e-11 Score=125.58 Aligned_cols=182 Identities=20% Similarity=0.279 Sum_probs=118.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQCF 67 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~~ 67 (541)
.+.+..+||+||+|+|||++++.+|+.+++. +++++.+ .......++.+.
T Consensus 35 ~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaa------s~~gvd~ir~I~ 108 (486)
T PRK14953 35 QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAA------SNRGIDDIRALR 108 (486)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCc------cCCCHHHHHHHH
Confidence 4566678999999999999999999987531 1112111 011122344444
Q ss_pred HHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCe
Q psy7673 68 QRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 68 ~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 143 (541)
+.+.. ..+.|++|||+|.+.. ...+.|+..++.. +..+++|.+|+.++.+.+.+++ |+.
T Consensus 109 ~~~~~~P~~~~~KVvIIDEad~Lt~------------~a~naLLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~- 171 (486)
T PRK14953 109 DAVSYTPIKGKYKVYIIDEAHMLTK------------EAFNALLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ- 171 (486)
T ss_pred HHHHhCcccCCeeEEEEEChhhcCH------------HHHHHHHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-
Confidence 44432 3457999999998842 3456788888753 3345666666767788888888 774
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCC
Q psy7673 144 ILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDD 223 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~ 223 (541)
.+.|.+++.++...+++.++...+.. .++-.+..++ ..+.| +.+++.++++.+...+ .
T Consensus 172 ~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La--~~s~G-~lr~al~~Ldkl~~~~-----~------------ 229 (486)
T PRK14953 172 RFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLA--QASEG-GMRDAASLLDQASTYG-----E------------ 229 (486)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHHhc-----C------------
Confidence 79999999999999999999875421 1222244444 45555 6778888887764321 0
Q ss_pred ccccccCHHHHHHHHHhc
Q psy7673 224 TEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 224 ~~~~~i~~~d~~~al~~~ 241 (541)
..|+.+++.+++...
T Consensus 230 ---~~It~~~V~~~lg~~ 244 (486)
T PRK14953 230 ---GKVTIKVVEEFLGIV 244 (486)
T ss_pred ---CCcCHHHHHHHhCCC
Confidence 137778877776543
No 156
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=2.3e-11 Score=124.23 Aligned_cols=167 Identities=17% Similarity=0.188 Sum_probs=114.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGI------------------------NFISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~------------------------~~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
..+.+..+||+||+|+|||++++++++.+.+ .+++++..+- .....++.+
T Consensus 32 ~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~------~gId~IRel 105 (535)
T PRK08451 32 NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASN------RGIDDIREL 105 (535)
T ss_pred cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHH
Confidence 3456777899999999999999999998732 2333332210 112334444
Q ss_pred HHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
...... ....|++|||+|.+. ...++.|++.++.. +..+.+|.+|+.+..+.+.+++ |+
T Consensus 106 ie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc- 168 (535)
T PRK08451 106 IEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT- 168 (535)
T ss_pred HHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-
Confidence 443321 233699999999884 24567889999864 3345666677778899999998 86
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a 205 (541)
..++|.+++.++....++..+...+.. .++-.+..++ ..+.| +.|++.++++.+...+
T Consensus 169 ~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia--~~s~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 169 QHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILA--RSGNG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred eeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-cHHHHHHHHHHHHHhc
Confidence 589999999999999999999876422 1222344555 45555 7888888888776543
No 157
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=2.4e-11 Score=126.28 Aligned_cols=164 Identities=22% Similarity=0.238 Sum_probs=112.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQCF 67 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~~ 67 (541)
.+.+..+||+||+|+|||++++++|+.+.+. ++.++... ......++.+.
T Consensus 35 ~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~ 108 (563)
T PRK06647 35 NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIK 108 (563)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHH
Confidence 4566779999999999999999999988542 22222110 01123344444
Q ss_pred HHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCe
Q psy7673 68 QRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 68 ~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 143 (541)
..+. .....|++|||+|.+. ....+.|++.++. .+..+++|.+++.+..+.+.+++ |+.
T Consensus 109 e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~- 171 (563)
T PRK06647 109 EEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ- 171 (563)
T ss_pred HHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-
Confidence 3332 2345799999999983 2356788888885 34456777777778889999998 875
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
.++|..++.++..++++..+...+.. .+...+..++ ....| +.+++.++++.+..
T Consensus 172 ~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa--~~s~G-dlR~alslLdklis 226 (563)
T PRK06647 172 HFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIA--YKSTG-SVRDAYTLFDQVVS 226 (563)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHh
Confidence 78999999999999999998765422 1222344455 45555 78888888877643
No 158
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.4e-11 Score=127.07 Aligned_cols=190 Identities=25% Similarity=0.341 Sum_probs=141.2
Q ss_pred hcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCccccc--cccCchHHHHHHHHHHHHhcCCc
Q psy7673 9 LFGKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELLN--MYLGESERAVRQCFQRARNSQPC 76 (541)
Q Consensus 9 ~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~ 76 (541)
.|.++..++-+|+|+||+|||.++..+|.+. +..++.+|...+.. +|.|+.+.+++.++++.....+.
T Consensus 185 IL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~v 264 (786)
T COG0542 185 ILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNV 264 (786)
T ss_pred HHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCe
Confidence 4577788888999999999999999999977 57788888888754 68999999999999999988889
Q ss_pred eEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCC
Q psy7673 77 VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPN 151 (541)
Q Consensus 77 il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~ 151 (541)
||||||+|.+.+.....+. ..+..+-|.-.|. ++.+.+|++|+..+ .-|++|-| ||. .|.+..|+
T Consensus 265 ILFIDEiHtiVGAG~~~G~---a~DAaNiLKPaLA----RGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs 334 (786)
T COG0542 265 ILFIDEIHTIVGAGATEGG---AMDAANLLKPALA----RGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPS 334 (786)
T ss_pred EEEEechhhhcCCCccccc---ccchhhhhHHHHh----cCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCC
Confidence 9999999999988765332 2333444444544 56688899888543 45889988 996 88899999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCHHHHH-----hhhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy7673 152 EQDRKEILLALTKQGKDPMMGEDVDFDKIA-----ADERCEGFSGADLEQLVKEAREQAILE 208 (541)
Q Consensus 152 ~~~r~~il~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~dl~~l~~~a~~~a~~~ 208 (541)
.++-..||+.+-.++..+.--.-.|....+ ..-.++-|-|.-...+++.|.......
T Consensus 335 ~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 335 VEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred HHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhc
Confidence 999999999987765432211111111111 111355677888889999887666543
No 159
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.32 E-value=2e-11 Score=122.33 Aligned_cols=183 Identities=20% Similarity=0.265 Sum_probs=120.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
..+.+..+||+||+|+|||++++.+++.+... ++.++..+ ......++.+
T Consensus 32 ~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l 105 (355)
T TIGR02397 32 NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREI 105 (355)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHH
Confidence 34566789999999999999999999987432 23333221 1122345566
Q ss_pred HHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
+..+.. ....|++|||+|.+.. ...+.|++.++.. ..++++|.++++++.+.+.+++ |+
T Consensus 106 ~~~~~~~p~~~~~~vviidea~~l~~------------~~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~- 168 (355)
T TIGR02397 106 LDNVKYAPSSGKYKVYIIDEVHMLSK------------SAFNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC- 168 (355)
T ss_pred HHHHhcCcccCCceEEEEeChhhcCH------------HHHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-
Confidence 665543 2336999999998832 3456778887753 3456777777888888888888 87
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCC
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGID 222 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 222 (541)
..++|++|+.++..++++..+...+.. + ++.....++ ..+.| +++.+.+.++.+....-
T Consensus 169 ~~~~~~~~~~~~l~~~l~~~~~~~g~~-i-~~~a~~~l~--~~~~g-~~~~a~~~lekl~~~~~---------------- 227 (355)
T TIGR02397 169 QRFDFKRIPLEDIVERLKKILDKEGIK-I-EDEALELIA--RAADG-SLRDALSLLDQLISFGN---------------- 227 (355)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCC-C-CHHHHHHHH--HHcCC-ChHHHHHHHHHHHhhcC----------------
Confidence 478999999999999999999875421 1 112233344 44444 66677666665543210
Q ss_pred CccccccCHHHHHHHHHhc
Q psy7673 223 DTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 223 ~~~~~~i~~~d~~~al~~~ 241 (541)
..|+.+++++++...
T Consensus 228 ----~~it~~~v~~~~~~~ 242 (355)
T TIGR02397 228 ----GNITYEDVNELLGLV 242 (355)
T ss_pred ----CCCCHHHHHHHhCCC
Confidence 127888888776544
No 160
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=4.5e-11 Score=124.70 Aligned_cols=169 Identities=20% Similarity=0.169 Sum_probs=112.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe-------Cc------ccccc----------ccCchHHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVK-------GP------ELLNM----------YLGESERAVRQCFQ 68 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~-------~~------~l~~~----------~~~~~~~~~~~~~~ 68 (541)
.+.+..+||+||+|+|||++++.+|+.+.+.....+ |. .+... ........++.+++
T Consensus 43 gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie 122 (598)
T PRK09111 43 GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIE 122 (598)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHH
Confidence 456778999999999999999999998865321111 11 01000 00111334555655
Q ss_pred HHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeE
Q psy7673 69 RARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRI 144 (541)
Q Consensus 69 ~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~ 144 (541)
.+.. ....|++|||+|.+.. ...+.|++.|++.. ..+.||.+|+..+.+.+.+++ |+ ..
T Consensus 123 ~~~~~P~~a~~KVvIIDEad~Ls~------------~a~naLLKtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~ 185 (598)
T PRK09111 123 SVRYRPVSARYKVYIIDEVHMLST------------AAFNALLKTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QR 185 (598)
T ss_pred HHHhchhcCCcEEEEEEChHhCCH------------HHHHHHHHHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eE
Confidence 5532 2457999999999842 34678888888533 345666667777778888888 87 48
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 145 LFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 145 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
++|..++.++...+++..+.+.+... +...+..++ ..+.| +.+++.++++.+.
T Consensus 186 ~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa--~~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 186 FDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIA--RAAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHH--HHcCC-CHHHHHHHHHHHH
Confidence 99999999999999999998754221 112233444 44555 7888888887764
No 161
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.7e-10 Score=121.40 Aligned_cols=168 Identities=20% Similarity=0.238 Sum_probs=110.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE----EeCcc--------------cc--ccccCchHHHHHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFIS----VKGPE--------------LL--NMYLGESERAVRQCFQRAR 71 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~----i~~~~--------------l~--~~~~~~~~~~~~~~~~~~~ 71 (541)
.+.+.++||+||+|+|||++++++|+.+.+.... -.|.. +. ..........++.++..+.
T Consensus 35 ~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~ 114 (620)
T PRK14948 35 NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQ 114 (620)
T ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHh
Confidence 3456689999999999999999999998652110 01110 00 0011223345666665554
Q ss_pred h----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEe
Q psy7673 72 N----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFV 147 (541)
Q Consensus 72 ~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~ 147 (541)
. ....|++|||+|.|. ....+.|++.+++ ....+++|.+|++++.+.+.+++ |+ ..++|
T Consensus 115 ~~p~~~~~KViIIDEad~Lt------------~~a~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f 177 (620)
T PRK14948 115 FAPVQARWKVYVIDECHMLS------------TAAFNALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDF 177 (620)
T ss_pred hChhcCCceEEEEECccccC------------HHHHHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEe
Confidence 2 234799999999984 2356788888885 33456777777778888889988 87 47899
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHH
Q psy7673 148 NLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEA 201 (541)
Q Consensus 148 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a 201 (541)
..++.++....+..++.+.+.. . +...+..++ +.+.| ..+++.++++..
T Consensus 178 ~~l~~~ei~~~L~~ia~kegi~-i-s~~al~~La--~~s~G-~lr~A~~lLekl 226 (620)
T PRK14948 178 RRIPLEAMVQHLSEIAEKESIE-I-EPEALTLVA--QRSQG-GLRDAESLLDQL 226 (620)
T ss_pred cCCCHHHHHHHHHHHHHHhCCC-C-CHHHHHHHH--HHcCC-CHHHHHHHHHHH
Confidence 9999999999999888764321 1 112244444 45555 556777776653
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.2e-11 Score=127.34 Aligned_cols=182 Identities=23% Similarity=0.292 Sum_probs=129.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeCcccccc------------ccCchHHHHHHHHHHHHhcCCce
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG---INFISVKGPELLNM------------YLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
+|..++||.||+|+|||.+++++|..+. ..++.+|++++..+ |+|..+. ..+.+..++..++|
T Consensus 519 rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySV 596 (786)
T COG0542 519 RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSV 596 (786)
T ss_pred CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc--cchhHhhhcCCCeE
Confidence 4555799999999999999999999994 78999999987643 4444331 22334445555689
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCC-------------------
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRPD------------------- 129 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~~------------------- 129 (541)
|++|||++-.+ ++++.|++.||+-. +..+.++|+|||--.
T Consensus 597 iLlDEIEKAHp------------dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~ 664 (786)
T COG0542 597 ILLDEIEKAHP------------DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALK 664 (786)
T ss_pred EEechhhhcCH------------HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHH
Confidence 99999998754 58889999998642 234589999999321
Q ss_pred ---------CCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCC-------CCCCCCCHHHHHhhhhcCCCCHHH
Q psy7673 130 ---------IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDP-------MMGEDVDFDKIAADERCEGFSGAD 193 (541)
Q Consensus 130 ---------~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~d 193 (541)
...|+|+. |++.+|.|.+.+.+...+|+..++...... ...++...+.++.......|.+|-
T Consensus 665 ~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARp 742 (786)
T COG0542 665 EAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARP 742 (786)
T ss_pred HHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchH
Confidence 13466766 999999999999999999998877653211 111112234444333445688899
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy7673 194 LEQLVKEAREQAILEIV 210 (541)
Q Consensus 194 l~~l~~~a~~~a~~~~~ 210 (541)
|+.+++.-....+.+..
T Consensus 743 L~R~Iq~~i~~~La~~i 759 (786)
T COG0542 743 LRRAIQQEIEDPLADEI 759 (786)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888777776544
No 163
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.28 E-value=3.7e-11 Score=104.00 Aligned_cols=123 Identities=37% Similarity=0.576 Sum_probs=83.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHH---HHHHHHHHHhcCCceEEEcCCcc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERA---VRQCFQRARNSQPCVIFFDEIDA 85 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~il~iDe~d~ 85 (541)
.....+++|+||+|+|||++++.+++.+ +.+++.+++.+............ ............+.+|+|||++.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~ 95 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDS 95 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhh
Confidence 3456789999999999999999999998 88999999887654322111111 11222333345678999999998
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHhcCCCC----CCCeEEEEecCCCC--CCCccccCCCCCCeEEEec
Q psy7673 86 LCPKRSSLGDNNSSMRIVNQLLTEMDGFEG----RGGVFLMAATNRPD--IIDPAVMRPGRFDRILFVN 148 (541)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~vi~t~~~~~--~l~~~l~~~~r~~~~i~~~ 148 (541)
+.. .....+...+..... ..++.+|++++... .+++.+.+ ||...+.++
T Consensus 96 ~~~------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 96 LSR------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred hhH------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 721 122344454444432 35688888988776 67777777 887666654
No 164
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.27 E-value=1.7e-10 Score=121.90 Aligned_cols=200 Identities=24% Similarity=0.345 Sum_probs=118.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCcccccc-------ccCchHH----HHHHHHHH---
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELLNM-------YLGESER----AVRQCFQR--- 69 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~~~-------~~~~~~~----~~~~~~~~--- 69 (541)
.+.+++|+||+|||||++++.+++.. +.+++.++|..+... .++.... .....+..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl 253 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGV 253 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCC
Confidence 45679999999999999999998655 357899998765211 1111100 00111110
Q ss_pred -------HHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCC--------------------------CCC
Q psy7673 70 -------ARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF--------------------------EGR 116 (541)
Q Consensus 70 -------~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--------------------------~~~ 116 (541)
......++|||||++.|... .+..|+..+++- ...
T Consensus 254 ~~~~~g~v~~asgGvL~LDEi~~Ld~~------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~ 321 (615)
T TIGR02903 254 PEPKTGLVTDAHGGVLFIDEIGELDPL------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAP 321 (615)
T ss_pred CchhcCchhhcCCCeEEEeccccCCHH------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCcc
Confidence 01223479999999988432 234444444321 012
Q ss_pred CCeEEEE-ecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHH
Q psy7673 117 GGVFLMA-ATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLE 195 (541)
Q Consensus 117 ~~~~vi~-t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~ 195 (541)
..+++|+ |++.++.+++.+++ ||. .+.|++++.+++..|++..+..... .+.+ -.+..++ ..+. .++...
T Consensus 322 ~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v-~ls~-eal~~L~--~ys~--~gRral 392 (615)
T TIGR02903 322 ADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINV-HLAA-GVEELIA--RYTI--EGRKAV 392 (615)
T ss_pred ceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCC-CCCH-HHHHHHH--HCCC--cHHHHH
Confidence 2355555 45567789999988 886 6789999999999999999886431 1111 1223333 2222 445666
Q ss_pred HHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 196 QLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 196 ~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
+.+..+...+..+.... . +......|+.+|++++++.-+
T Consensus 393 n~L~~~~~~~~~~~~~~--~------~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 393 NILADVYGYALYRAAEA--G------KENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHHHHHHHh--c------cCCCCeeECHHHHHHHhCCCc
Confidence 66666654443332100 0 011235799999999998643
No 165
>KOG1969|consensus
Probab=99.27 E-value=1.4e-10 Score=117.65 Aligned_cols=174 Identities=21% Similarity=0.296 Sum_probs=115.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHH----HhcCCceEEEcCCccc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRA----RNSQPCVIFFDEIDAL 86 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~il~iDe~d~l 86 (541)
+.++.+-+||+||||.||||||+.+|++.|+.+++||+++-... .....++..+...- ...+|..|+|||||--
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 45556678999999999999999999999999999999875321 11222222222111 1257899999999864
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhcCC------CCC-------------CCeEEEEecCCCCCCCccccCCCCCCeEEEe
Q psy7673 87 CPKRSSLGDNNSSMRIVNQLLTEMDGF------EGR-------------GGVFLMAATNRPDIIDPAVMRPGRFDRILFV 147 (541)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~-------------~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~ 147 (541)
. ...+..++..+... ... -...|||+||+.. -|+|+.-.-|..++.|
T Consensus 400 ~------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f 465 (877)
T KOG1969|consen 400 P------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAF 465 (877)
T ss_pred c------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEe
Confidence 2 23344444444310 000 1258999999643 4566532257789999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy7673 148 NLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILE 208 (541)
Q Consensus 148 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~ 208 (541)
.+|......+-|+.+|..++. ..|...+. ..++- +..||+..++.....+...
T Consensus 466 ~~p~~s~Lv~RL~~IC~rE~m-----r~d~~aL~--~L~el-~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 466 VPPSQSRLVERLNEICHRENM-----RADSKALN--ALCEL-TQNDIRSCINTLQFLASNV 518 (877)
T ss_pred cCCChhHHHHHHHHHHhhhcC-----CCCHHHHH--HHHHH-hcchHHHHHHHHHHHHHhc
Confidence 999999999999999987641 23333333 33333 4559999999888887643
No 166
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=6.6e-11 Score=119.24 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=116.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE----------EEeCccc------cc-------cccC---chHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFI----------SVKGPEL------LN-------MYLG---ESERAVRQ 65 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~----------~i~~~~l------~~-------~~~~---~~~~~~~~ 65 (541)
.+.+..+||+||+|+|||++++++|+.+.+.-. .-.|... .. .+.+ .....++.
T Consensus 35 ~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~ 114 (397)
T PRK14955 35 GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRL 114 (397)
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHH
Confidence 456677999999999999999999999865210 0112110 00 0001 11233444
Q ss_pred HHHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCC
Q psy7673 66 CFQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRF 141 (541)
Q Consensus 66 ~~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~ 141 (541)
+...+.. ....|++|||+|.+.. ...+.|++.+++. ....++|.+++.+..+.+.+++ |+
T Consensus 115 l~~~~~~~p~~~~~kvvIIdea~~l~~------------~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~ 178 (397)
T PRK14955 115 LRENVRYGPQKGRYRVYIIDEVHMLSI------------AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC 178 (397)
T ss_pred HHHHHhhchhcCCeEEEEEeChhhCCH------------HHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HH
Confidence 4444421 2346999999999842 2345778877743 2345666666667788888887 76
Q ss_pred CeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCC
Q psy7673 142 DRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGI 221 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~ 221 (541)
. .++|.+++.++....++..+...+.. .++-.+..++ ..+.| +.+.+.+.++.+...+-.
T Consensus 179 ~-~v~f~~l~~~ei~~~l~~~~~~~g~~--i~~~al~~l~--~~s~g-~lr~a~~~L~kl~~~~~~-------------- 238 (397)
T PRK14955 179 Q-RFNFKRIPLEEIQQQLQGICEAEGIS--VDADALQLIG--RKAQG-SMRDAQSILDQVIAFSVE-------------- 238 (397)
T ss_pred H-HhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHHhccc--------------
Confidence 4 78999999999999999988764311 1122234444 44544 667777776665433210
Q ss_pred CCccccccCHHHHHHHHHh
Q psy7673 222 DDTEQVTIGFRHFDIALKR 240 (541)
Q Consensus 222 ~~~~~~~i~~~d~~~al~~ 240 (541)
......|+.+++.+.+..
T Consensus 239 -~~~~~~It~~~v~~~v~~ 256 (397)
T PRK14955 239 -SEGEGSIRYDKVAELLNY 256 (397)
T ss_pred -cCCCCccCHHHHHHHHCC
Confidence 011134778888777643
No 167
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.26 E-value=2.3e-10 Score=119.63 Aligned_cols=239 Identities=14% Similarity=0.111 Sum_probs=141.3
Q ss_pred ccccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc-EEEEecCceeEeeCEEEEcCChhHHH-hhhccc--Cc
Q psy7673 294 SVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG-VKVTLNNDQHIEANHVVSALPAPKLG-MLLHKQ--HP 368 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~t~P~~~~~-~ll~~~--~~ 368 (541)
..|...||+..+.++|++.+ ..|++|+++++|++|..++++ +.|.+.+|+++.+|+||+++.++.+. +|++.. ++
T Consensus 220 g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~ 299 (493)
T TIGR02730 220 GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPK 299 (493)
T ss_pred eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccch
Confidence 35789999999999999999 668999999999999887554 56777788789999999998776555 576532 23
Q ss_pred hhHhhhcCCC-CccEEEEEEeeCCCCCCC--CccEEEecC----CCCCCceEEEeeccccc---CCCcEEEEEEecCccC
Q psy7673 369 TLGNLLSSIE-HVNVAVINLAYENIPMKQ--NAFGFLVPP----REKLPILGVVFDSCCFE---QADWTILTVMMGGAWY 438 (541)
Q Consensus 369 ~~~~~l~~~~-~~~~~~v~l~~~~~~~~~--~~~g~l~~~----~~~~~~~~~~~~s~~~~---~~~~~~l~~~~~g~~~ 438 (541)
.....+++.. ..+.++++++++....+. ..+..+.+. ....+...+...+...+ +.+...+++++. .+.
T Consensus 300 ~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~-~~~ 378 (493)
T TIGR02730 300 KEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTP-SSM 378 (493)
T ss_pred hhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecC-CCh
Confidence 3333334444 446889999997632111 111222221 11122333333332222 245667766663 222
Q ss_pred CcccC------CCCHHHHHHHHHHHHHhHc-CCCCCCceeEe---eeccC--CCCC--CCCCHHHHHHHHHH--HHhhCC
Q psy7673 439 DTYFK------GQSKEYILDIACRYVHEIL-DMPRTPHAQHV---EILKA--CIPQ--YTLGHAARVKDIQG--YIDTHQ 502 (541)
Q Consensus 439 ~~~~~------~~~~e~~~~~~~~~l~~~~-g~~~~~~~~~~---~~w~~--a~p~--~~~g~~~~~~~~~~--~l~~~~ 502 (541)
..|.. ...++++.+.+++.+++.+ +.....+...+ ..|++ ..+. |..-+......... ...++.
T Consensus 379 ~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i 458 (493)
T TIGR02730 379 EDWQGLSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAI 458 (493)
T ss_pred hhccCCCcHHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCC
Confidence 22210 0124668899999999887 33333322222 11211 0111 21111100000000 012456
Q ss_pred CCEEEEcCCC-CCCChHHHHHHHHHHHHHHhh
Q psy7673 503 LPLYLTGSSY-DGVGVNDVIALSKKAVESIKW 533 (541)
Q Consensus 503 ~~l~laG~~~-~g~~v~~ai~sg~~aa~~i~~ 533 (541)
+|||+||+|. .|.|+++|+.||+.+|++|+.
T Consensus 459 ~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 459 PGLYCVGDSCFPGQGLNAVAFSGFACAHRVAA 490 (493)
T ss_pred CCeEEecCcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 7999999999 578999999999999999954
No 168
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.3e-10 Score=116.71 Aligned_cols=163 Identities=21% Similarity=0.315 Sum_probs=106.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------EEEEeCccccccccCchHHHHHHHHHHHHh----cCC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------FISVKGPELLNMYLGESERAVRQCFQRARN----SQP 75 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~ 75 (541)
...+.++|||||+|+|||++++++++.+... ++.++.. .......++.++..+.. ..+
T Consensus 36 ~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~ 109 (367)
T PRK14970 36 NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKY 109 (367)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc------cCCCHHHHHHHHHHHhhccccCCc
Confidence 4567789999999999999999999987542 1222211 11122445555555432 234
Q ss_pred ceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHH
Q psy7673 76 CVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDR 155 (541)
Q Consensus 76 ~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r 155 (541)
.+|+|||+|.+.. ..++.|+..++.. ....++|.+++.+..+.+.+.+ |+. .++++.|+.++.
T Consensus 110 kiviIDE~~~l~~------------~~~~~ll~~le~~--~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l 172 (367)
T PRK14970 110 KIYIIDEVHMLSS------------AAFNAFLKTLEEP--PAHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDI 172 (367)
T ss_pred EEEEEeChhhcCH------------HHHHHHHHHHhCC--CCceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHH
Confidence 7999999998742 2356777777652 2335666667777788888887 774 789999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 156 KEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 156 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
..++...+.+.+.. . ++-.+..++ ..+.| +.+.+.+.++...
T Consensus 173 ~~~l~~~~~~~g~~-i-~~~al~~l~--~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 173 KEHLAGIAVKEGIK-F-EDDALHIIA--QKADG-ALRDALSIFDRVV 214 (367)
T ss_pred HHHHHHHHHHcCCC-C-CHHHHHHHH--HhCCC-CHHHHHHHHHHHH
Confidence 99999988875421 1 222344444 34443 5666666666553
No 169
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=4.3e-10 Score=114.47 Aligned_cols=162 Identities=22% Similarity=0.237 Sum_probs=106.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-------------------------EEEEeCccccccccCchHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN-------------------------FISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~-------------------------~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
.+.+.++||+||+|+|||++++.+|+.+.+. +++++.... .....++.+
T Consensus 36 ~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i 109 (451)
T PRK06305 36 NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQI 109 (451)
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecccc------CCHHHHHHH
Confidence 4567789999999999999999999987432 222222110 001223322
Q ss_pred HHHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
..... .....|++|||+|.+.. ...+.|++.++.. ...+++|.+++.+..+.+.+++ |+.
T Consensus 110 ~~~l~~~~~~~~~kvvIIdead~lt~------------~~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~ 173 (451)
T PRK06305 110 NETVLFTPSKSRYKIYIIDEVHMLTK------------EAFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ 173 (451)
T ss_pred HHHHHhhhhcCCCEEEEEecHHhhCH------------HHHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce
Confidence 22221 23457999999998842 2456888888863 3356777777877889899998 874
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEA 201 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a 201 (541)
.++|..++.++...+++..+...+.. .+...+..++ ..+.| +.+++.++++..
T Consensus 174 -~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~--~~s~g-dlr~a~~~Lekl 226 (451)
T PRK06305 174 -KMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIA--RAAQG-SLRDAESLYDYV 226 (451)
T ss_pred -EEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHH
Confidence 79999999999999999988864321 1222244445 44444 566666666654
No 170
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=3.8e-10 Score=117.99 Aligned_cols=172 Identities=17% Similarity=0.176 Sum_probs=109.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE----------EeCccc------c-----c--cccC---chHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFIS----------VKGPEL------L-----N--MYLG---ESERAVR 64 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~----------i~~~~l------~-----~--~~~~---~~~~~~~ 64 (541)
+.+.+.++||+||+|+|||++|+.+|+.+.+.... -.|... . + .+.+ .....++
T Consensus 34 ~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir 113 (620)
T PRK14954 34 MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIR 113 (620)
T ss_pred cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHH
Confidence 34667789999999999999999999998663100 112111 0 0 0011 1123344
Q ss_pred HHHHHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCC
Q psy7673 65 QCFQRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGR 140 (541)
Q Consensus 65 ~~~~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r 140 (541)
.+.+.+. .....|++|||+|.+.. ...+.|++.++... ...++|.+++.+..+.+.+++ |
T Consensus 114 ~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------~a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--R 177 (620)
T PRK14954 114 QLRENVRYGPQKGRYRVYIIDEVHMLST------------AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--R 177 (620)
T ss_pred HHHHHHHhhhhcCCCEEEEEeChhhcCH------------HHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--h
Confidence 4444442 22347999999999842 23568888888633 335666666767888888888 7
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q psy7673 141 FDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQ 204 (541)
Q Consensus 141 ~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~ 204 (541)
+ ..++|..++.++....++..+...+.. .+...+..++ ..+.| +.+++.+.++.....
T Consensus 178 c-~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La--~~s~G-dlr~al~eLeKL~~y 235 (620)
T PRK14954 178 C-QRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIA--RKAQG-SMRDAQSILDQVIAF 235 (620)
T ss_pred c-eEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHhCC-CHHHHHHHHHHHHHh
Confidence 7 589999999999999999988864321 1222344444 44544 667777776665433
No 171
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.2e-10 Score=104.38 Aligned_cols=98 Identities=31% Similarity=0.478 Sum_probs=73.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc-cccCchHHH-HHHHHHHH----HhcCCceEEEcCCccccCC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN-MYLGESERA-VRQCFQRA----RNSQPCVIFFDEIDALCPK 89 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~-~~~~~~~~~-~~~~~~~~----~~~~~~il~iDe~d~l~~~ 89 (541)
+++||.||+|||||.+|+.+|+.+++||..-|+..+.. .|+|+...+ +..++..+ .+...+|++|||||.+..+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 57999999999999999999999999999999998864 467776554 33343333 2345589999999999877
Q ss_pred CCCCCC--CChhHHHHHHHHHHhcCC
Q psy7673 90 RSSLGD--NNSSMRIVNQLLTEMDGF 113 (541)
Q Consensus 90 ~~~~~~--~~~~~~~~~~l~~~l~~~ 113 (541)
.....- .-.-.-+++.|++.+++.
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcCc
Confidence 543211 112256788999999874
No 172
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.23 E-value=3.2e-10 Score=111.93 Aligned_cols=178 Identities=19% Similarity=0.185 Sum_probs=110.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEeCccccccccCchHHHHHHHHHHHHh------cCCceEEEcCC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAG-----INFISVKGPELLNMYLGESERAVRQCFQRARN------SQPCVIFFDEI 83 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~-----~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDe~ 83 (541)
..+++|+||+|+|||++++++++++. ..++.+++++..+ ...+...+..... ..+.+|+|||+
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~ 111 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEA 111 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCc
Confidence 34689999999999999999999872 3455555543211 1112122211111 23469999999
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHH
Q psy7673 84 DALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 84 d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~ 163 (541)
|.+... ..+.|...++..... ..+|.+++....+.+.+.+ |+. .++|++++.++...+++..+
T Consensus 112 ~~l~~~------------~~~~L~~~le~~~~~--~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~ 174 (319)
T PRK00440 112 DNLTSD------------AQQALRRTMEMYSQN--TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIA 174 (319)
T ss_pred ccCCHH------------HHHHHHHHHhcCCCC--CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHH
Confidence 988422 234666666654433 3556666766777777887 775 68999999999999999999
Q ss_pred hcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 164 KQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
...+.. .+...+..++ ..+.| ..+.+.+.++.+... . ..||.+++..++...
T Consensus 175 ~~~~~~--i~~~al~~l~--~~~~g-d~r~~~~~l~~~~~~------~---------------~~it~~~v~~~~~~~ 226 (319)
T PRK00440 175 ENEGIE--ITDDALEAIY--YVSEG-DMRKAINALQAAAAT------G---------------KEVTEEAVYKITGTA 226 (319)
T ss_pred HHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHHc------C---------------CCCCHHHHHHHhCCC
Confidence 875422 1222345555 44444 455555555543221 0 137788877776544
No 173
>KOG0745|consensus
Probab=99.22 E-value=3.4e-10 Score=108.30 Aligned_cols=190 Identities=25% Similarity=0.349 Sum_probs=124.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc-cccCch-HHHHHHHHHHHH----hcCCceEEEcCCccccC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN-MYLGES-ERAVRQCFQRAR----NSQPCVIFFDEIDALCP 88 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~-~~~~~~-~~~~~~~~~~~~----~~~~~il~iDe~d~l~~ 88 (541)
-.++||.||+|+|||.+++.+|+.++++|...||..|.. .|+|+. +..+..++..+. ..+.+|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 357999999999999999999999999999999998854 466654 445555655542 34568999999999985
Q ss_pred CCCCCCCC--ChhHHHHHHHHHHhcCCC-------------------CCCCeEEEEecCCCC------------------
Q psy7673 89 KRSSLGDN--NSSMRIVNQLLTEMDGFE-------------------GRGGVFLMAATNRPD------------------ 129 (541)
Q Consensus 89 ~~~~~~~~--~~~~~~~~~l~~~l~~~~-------------------~~~~~~vi~t~~~~~------------------ 129 (541)
........ -.-+-+++.|++.+++.. ...+++||+..-...
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~ 385 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGA 385 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCC
Confidence 54432221 122567889999998631 112456665432110
Q ss_pred --------------------------------------CCCccccCCCCCCeEEEecCCCHHHHHHHHHH----HHhcCC
Q psy7673 130 --------------------------------------IIDPAVMRPGRFDRILFVNLPNEQDRKEILLA----LTKQGK 167 (541)
Q Consensus 130 --------------------------------------~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~----~~~~~~ 167 (541)
-|-|.| -|||+..+.|...++++..++|.. +...+.
T Consensus 386 ~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEf--VGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk 463 (564)
T KOG0745|consen 386 PSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEF--VGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYK 463 (564)
T ss_pred CCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHH--hcccceEeeccccCHHHHHHHHhcchhhHHHHHH
Confidence 011222 269999999999999999988842 111111
Q ss_pred -------CCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHH
Q psy7673 168 -------DPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAI 206 (541)
Q Consensus 168 -------~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~ 206 (541)
.......-.++.+|...+..+-.+|-|+.+++.+...+.
T Consensus 464 ~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleam 509 (564)
T KOG0745|consen 464 KLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAM 509 (564)
T ss_pred HHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhc
Confidence 111111222455554445556667888888888877764
No 174
>PRK04132 replication factor C small subunit; Provisional
Probab=99.22 E-value=2.7e-10 Score=121.88 Aligned_cols=158 Identities=20% Similarity=0.211 Sum_probs=114.9
Q ss_pred EEEEEc--CCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHHHHHHHHHHHHhc------CCceEEEcCC
Q psy7673 17 GVLLCG--PPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRARNS------QPCVIFFDEI 83 (541)
Q Consensus 17 ~~ll~G--~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~il~iDe~ 83 (541)
.-+..| |++.||||+|+++|+++ +.+++++|+++..+. ..++.+...+... +..|++|||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 446678 99999999999999998 568999999875321 2444444433221 2369999999
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHH
Q psy7673 84 DALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 84 d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~ 163 (541)
|.|.. ..++.|+..++.. ..++.+|.+||++..+.++++| |+ ..+.|++|+.++....|+..+
T Consensus 640 D~Lt~------------~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~ 702 (846)
T PRK04132 640 DALTQ------------DAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIA 702 (846)
T ss_pred ccCCH------------HHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHH
Confidence 99943 3467888888853 3457899999999999999998 87 589999999999999999998
Q ss_pred hcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 164 KQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
.+.+.. .++..+..++ ..+.| +.|...++++.+.
T Consensus 703 ~~Egi~--i~~e~L~~Ia--~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 703 ENEGLE--LTEEGLQAIL--YIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HhcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHH
Confidence 865421 1222355555 55666 5566666666543
No 175
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.21 E-value=3.2e-10 Score=124.92 Aligned_cols=181 Identities=20% Similarity=0.273 Sum_probs=121.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc------------cCchHHHHHHHHHHHHhcCCceE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY------------LGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~------------~~~~~~~~~~~~~~~~~~~~~il 78 (541)
|...+||+||+|||||++|++++..+ +.+++.++|+++.... +|... ...+....+....+||
T Consensus 594 p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vl 671 (852)
T TIGR03346 594 PIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVV 671 (852)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEE
Confidence 44579999999999999999999987 5689999998764321 11111 1123333344455799
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCC--------------------
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRPD-------------------- 129 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~~-------------------- 129 (541)
+|||++.+.+ .+++.|++.++.-. +..+.+||+|||...
T Consensus 672 llDeieka~~------------~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~ 739 (852)
T TIGR03346 672 LFDEVEKAHP------------DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVM 739 (852)
T ss_pred EEeccccCCH------------HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHH
Confidence 9999998743 45677888776431 124578999999621
Q ss_pred -----CCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHhhhhcCCCCHHHHHHH
Q psy7673 130 -----IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGK-------DPMMGEDVDFDKIAADERCEGFSGADLEQL 197 (541)
Q Consensus 130 -----~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l 197 (541)
.+.|.|.. |++.++.|.+++.++..+|+...+.... .....++-..+.++.......+.+|.|+++
T Consensus 740 ~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~ 817 (852)
T TIGR03346 740 EVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRA 817 (852)
T ss_pred HHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHH
Confidence 13456666 9999999999999999999988775311 011111222344442112335778999999
Q ss_pred HHHHHHHHHHHHh
Q psy7673 198 VKEAREQAILEIV 210 (541)
Q Consensus 198 ~~~a~~~a~~~~~ 210 (541)
+++.....+.+..
T Consensus 818 i~~~i~~~l~~~~ 830 (852)
T TIGR03346 818 IQREIENPLAKKI 830 (852)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888877644
No 176
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.20 E-value=2.6e-10 Score=124.96 Aligned_cols=179 Identities=20% Similarity=0.265 Sum_probs=117.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc-----c-------CchHHHHHHHHHHHHhcCCceEEE
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY-----L-------GESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~-----~-------~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
..+||+||+|||||++++++++.+ +.+++.++|+++.... + +... -..+....+....++|+|
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLll 676 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILL 676 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEE
Confidence 468999999999999999999887 4578999998764321 1 1111 011222233344489999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-----------------------
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP----------------------- 128 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~----------------------- 128 (541)
||++.+.+ ..++.|+..++... +..+.+||+|||..
T Consensus 677 DEieka~~------------~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~ 744 (857)
T PRK10865 677 DEVEKAHP------------DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGV 744 (857)
T ss_pred eehhhCCH------------HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHH
Confidence 99998742 35667777776421 12345789999862
Q ss_pred --CCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcC-------CCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHH
Q psy7673 129 --DIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQG-------KDPMMGEDVDFDKIAADERCEGFSGADLEQLVK 199 (541)
Q Consensus 129 --~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~ 199 (541)
..+.|+|++ |++.++.|.+++.++...|++.++... +.....++-.++.++.......|.+|.|+.+++
T Consensus 745 ~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~ 822 (857)
T PRK10865 745 VSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQ 822 (857)
T ss_pred HcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHH
Confidence 124567777 999999999999999999998877652 111111112233344222334466899999999
Q ss_pred HHHHHHHHHHh
Q psy7673 200 EAREQAILEIV 210 (541)
Q Consensus 200 ~a~~~a~~~~~ 210 (541)
+-....+.+..
T Consensus 823 ~~i~~~la~~i 833 (857)
T PRK10865 823 QQIENPLAQQI 833 (857)
T ss_pred HHHHHHHHHHH
Confidence 88777766543
No 177
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.20 E-value=2.1e-10 Score=125.29 Aligned_cols=180 Identities=17% Similarity=0.239 Sum_probs=119.9
Q ss_pred CCc-EEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc------------ccCchHHHHHHHHHHHHhcCCce
Q psy7673 14 TPS-GVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM------------YLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 14 ~~~-~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
.|. .+||+||+|||||.+++++|..+ ...++.+|++++... |.|..+. ..+....+.+.++|
T Consensus 594 ~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~sv 671 (852)
T TIGR03345 594 KPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSV 671 (852)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcE
Confidence 344 58999999999999999999988 457899998776432 2222211 12234445566799
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCC-------------------
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRPD------------------- 129 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~~------------------- 129 (541)
|+|||++...+ .+.+.|++.++.-. +..+.+||+|||...
T Consensus 672 vllDEieka~~------------~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~ 739 (852)
T TIGR03345 672 VLLDEVEKAHP------------DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEAL 739 (852)
T ss_pred EEEechhhcCH------------HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHH
Confidence 99999987643 45667777776532 124579999988421
Q ss_pred ----------CCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcC--------CCCCCCCCCCHHHHHhhhhcCCCCH
Q psy7673 130 ----------IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQG--------KDPMMGEDVDFDKIAADERCEGFSG 191 (541)
Q Consensus 130 ----------~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~ 191 (541)
.+.|+|++ |++ +|.|.+++.++..+|++..+... +.....++...+.++.......|.+
T Consensus 740 ~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GA 816 (852)
T TIGR03345 740 LEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGA 816 (852)
T ss_pred HHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCCh
Confidence 14566666 886 89999999999999998876542 1111112222444552223344678
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy7673 192 ADLEQLVKEAREQAILEIV 210 (541)
Q Consensus 192 ~dl~~l~~~a~~~a~~~~~ 210 (541)
|.++++++.-...++.+..
T Consensus 817 R~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 817 RNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999988777766543
No 178
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.19 E-value=3.4e-10 Score=105.73 Aligned_cols=187 Identities=17% Similarity=0.227 Sum_probs=111.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCccc------cc--------cc--cCchHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPEL------LN--------MY--LGESERAVRQC 66 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l------~~--------~~--~~~~~~~~~~~ 66 (541)
.....++||+|++|.|||++++.+++.. ..+++.+.+..- +. .+ ..........+
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~ 137 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQV 137 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHH
Confidence 4556689999999999999999999766 257777775321 11 11 12233444455
Q ss_pred HHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC--CC--CCCccccCCCCCC
Q psy7673 67 FQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR--PD--IIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~--~~--~l~~~l~~~~r~~ 142 (541)
..-.+..++.+|+|||+|.++.... ..+..+++.+..+.+.-.+.+|+.... .. .-|+.+.+ ||.
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~---------~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~ 206 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSY---------RKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE 206 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccH---------HHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC
Confidence 5666777889999999999753321 123344444444444445555555432 11 34677777 996
Q ss_pred eEEEecCCC-HHHHHHHHHHHHhcCCCCCCCCCCCHHHHH--hhhhcCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy7673 143 RILFVNLPN-EQDRKEILLALTKQGKDPMMGEDVDFDKIA--ADERCEGFSGADLEQLVKEAREQAILEIVNS 212 (541)
Q Consensus 143 ~~i~~~~p~-~~~r~~il~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~ 212 (541)
.+.++.-. -++...++..+-... ...-.+++....++ .-..+.|.. +++..+++.|+..|+....+.
T Consensus 207 -~~~Lp~W~~d~ef~~LL~s~e~~L-PLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~sG~E~ 276 (302)
T PF05621_consen 207 -PFELPRWELDEEFRRLLASFERAL-PLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRSGEER 276 (302)
T ss_pred -CccCCCCCCCcHHHHHHHHHHHhC-CCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhcCCce
Confidence 44544322 244455555544432 11122223333332 114678864 599999999999999776554
No 179
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=3.9e-10 Score=119.06 Aligned_cols=162 Identities=20% Similarity=0.258 Sum_probs=107.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE-------------------------EEEeCccccccccCchHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINF-------------------------ISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~-------------------------~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
.+.+..+||+||+|+|||++++.+++.+.+.. ++++... ......++.+
T Consensus 35 ~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~i 108 (585)
T PRK14950 35 GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREI 108 (585)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHH
Confidence 45566789999999999999999999885321 2222110 1112334444
Q ss_pred HHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
.+.+.. ....|++|||+|.|.. ..++.|++.++... ...+||.+++..+.+.+.+++ |+.
T Consensus 109 i~~~~~~p~~~~~kVvIIDEa~~L~~------------~a~naLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~ 172 (585)
T PRK14950 109 IERVQFRPALARYKVYIIDEVHMLST------------AAFNALLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ 172 (585)
T ss_pred HHHHhhCcccCCeEEEEEeChHhCCH------------HHHHHHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc
Confidence 443322 2347999999998842 34667888888543 345666677777778888887 774
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEA 201 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a 201 (541)
.+.|..++..+...+++..+...+.. . +...+..++ ..+.| +.+++.+++++.
T Consensus 173 -~i~f~~l~~~el~~~L~~~a~~egl~-i-~~eal~~La--~~s~G-dlr~al~~LekL 225 (585)
T PRK14950 173 -RFDFHRHSVADMAAHLRKIAAAEGIN-L-EPGALEAIA--RAATG-SMRDAENLLQQL 225 (585)
T ss_pred -eeeCCCCCHHHHHHHHHHHHHHcCCC-C-CHHHHHHHH--HHcCC-CHHHHHHHHHHH
Confidence 78999999999999999988865421 1 122234444 44555 777777777764
No 180
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.18 E-value=5.3e-11 Score=104.51 Aligned_cols=115 Identities=26% Similarity=0.310 Sum_probs=74.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEeCccccccc-cCc-hHHHHHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGI----NFISVKGPELLNMY-LGE-SERAVRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~----~~~~i~~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
|-.++||.||+|||||.+++++++.+.. +++.+||+.+.... ... ....+...-.........||+|||||+..
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 5568999999999999999999999996 99999999886610 001 11111111011111122599999999998
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCC---------CCCCCeEEEEecCCCC
Q psy7673 88 PKRSSLGDNNSSMRIVNQLLTEMDGF---------EGRGGVFLMAATNRPD 129 (541)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~~---------~~~~~~~vi~t~~~~~ 129 (541)
+. .....+..-..+++.|++.+++. .+..++++|+|+|.-.
T Consensus 82 ~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 75 22122223346788889888753 1234689999999543
No 181
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.17 E-value=2.9e-10 Score=110.22 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=57.3
Q ss_pred ceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCC-CCCccccCCCCCCe
Q psy7673 76 CVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-----------GRGGVFLMAATNRPD-IIDPAVMRPGRFDR 143 (541)
Q Consensus 76 ~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~vi~t~~~~~-~l~~~l~~~~r~~~ 143 (541)
++|+|||++.+.+ ..++.|++.++.-. -..+++++++.|..+ .+++.+.. ||..
T Consensus 130 GiL~lDEInrl~~------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~ 195 (334)
T PRK13407 130 GYLYIDEVNLLED------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGL 195 (334)
T ss_pred CeEEecChHhCCH------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcce
Confidence 6999999999843 45567777775421 234688888888654 58889988 9999
Q ss_pred EEEecCCCH-HHHHHHHHHHHh
Q psy7673 144 ILFVNLPNE-QDRKEILLALTK 164 (541)
Q Consensus 144 ~i~~~~p~~-~~r~~il~~~~~ 164 (541)
.+.+++|.. ++|.+|++....
T Consensus 196 ~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 196 SVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred EEEcCCCCcHHHHHHHHHHhhc
Confidence 999998866 999999988643
No 182
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.17 E-value=6.7e-10 Score=122.00 Aligned_cols=179 Identities=23% Similarity=0.263 Sum_probs=120.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc------------ccCchHHHHHHHHHHHHhcCCceEEE
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM------------YLGESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
.++||+||+|||||++++++|+.+ ..+++.++++++... |.+..+ ...+...++.+..+||+|
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~Vvll 617 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLF 617 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEE
Confidence 468999999999999999999988 467899998876432 111111 123344445555689999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCCC---------------------
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRPDI--------------------- 130 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~~~--------------------- 130 (541)
||+|.+. ..+.+.|++.++... +..+.+||+|||....
T Consensus 618 Deieka~------------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~ 685 (821)
T CHL00095 618 DEIEKAH------------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEK 685 (821)
T ss_pred CChhhCC------------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccc
Confidence 9999874 346678888887531 2346899999884211
Q ss_pred ----------------CCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHhhhhcC
Q psy7673 131 ----------------IDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGK-------DPMMGEDVDFDKIAADERCE 187 (541)
Q Consensus 131 ----------------l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 187 (541)
+.|.|++ |++.+|.|.+.+.++..+|++..+.... .....++-..+.++......
T Consensus 686 ~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~ 763 (821)
T CHL00095 686 QYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNP 763 (821)
T ss_pred cHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCC
Confidence 2245666 9999999999999999999988776421 01111112234455222345
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q psy7673 188 GFSGADLEQLVKEAREQAILEIV 210 (541)
Q Consensus 188 g~~~~dl~~l~~~a~~~a~~~~~ 210 (541)
.|.+|.|+.++++-....+.+..
T Consensus 764 ~~GAR~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 764 LYGARPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred CCChhhHHHHHHHHHHHHHHHHH
Confidence 67789999998888777766543
No 183
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.17 E-value=2.1e-10 Score=119.04 Aligned_cols=196 Identities=15% Similarity=0.188 Sum_probs=120.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----eCccccccccCch-HH--HHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISV----KGPELLNMYLGES-ER--AVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i----~~~~l~~~~~~~~-~~--~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
.++||+|+||||||++++.+++......+.. ++..+........ .. .++. ........++++|||++.+.+
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~--G~l~~A~~Gil~iDEi~~l~~ 314 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEG--GALVLADNGVCCIDEFDKMDD 314 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecC--ccEEecCCCEEEEechhhCCH
Confidence 3799999999999999999999875433222 2222211110000 00 0000 001122347999999999843
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCC-------------CCCccccCCCCCCeE
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDGFE-----------GRGGVFLMAATNRPD-------------IIDPAVMRPGRFDRI 144 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~vi~t~~~~~-------------~l~~~l~~~~r~~~~ 144 (541)
. .+..|++.+++-. -+.++.|||++|+.+ .+++++++ ||+..
T Consensus 315 ~------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi 380 (509)
T smart00350 315 S------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLL 380 (509)
T ss_pred H------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeE
Confidence 3 3446666665321 124589999999652 58899999 99866
Q ss_pred EE-ecCCCHHHHHHHHHHHHhcCCCC------CCCCCCCHHHH----Hh-----------------------hhh-----
Q psy7673 145 LF-VNLPNEQDRKEILLALTKQGKDP------MMGEDVDFDKI----AA-----------------------DER----- 185 (541)
Q Consensus 145 i~-~~~p~~~~r~~il~~~~~~~~~~------~~~~~~~~~~l----~~-----------------------~~~----- 185 (541)
+. ...|+.+...+|+++.+..+... .....++.+.+ ++ .+.
T Consensus 381 ~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~ 460 (509)
T smart00350 381 FVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQS 460 (509)
T ss_pred EEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccccc
Confidence 44 46899999999999876532100 00001111111 00 010
Q ss_pred ----cCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCC
Q psy7673 186 ----CEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKP 243 (541)
Q Consensus 186 ----~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 243 (541)
..+.++|.+..|++-|...|..+.++. ++.+|+.+|++-+..
T Consensus 461 ~~~~~~~~t~R~l~sliRla~A~A~l~~r~~----------------V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 461 EARSSIPITVRQLESIIRLSEAHAKMRLSDV----------------VEEADVEEAIRLLRE 506 (509)
T ss_pred ccccccCcCHHHHHHHHHHHHHHHHHcCCCc----------------cCHHHHHHHHHHHHH
Confidence 124678999999999988888887655 999999999876643
No 184
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=5.8e-10 Score=108.46 Aligned_cols=133 Identities=20% Similarity=0.272 Sum_probs=95.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
..+.+..+||+||+|+|||++++.+|+.+.+. ++.+...+- + .......++.+
T Consensus 18 ~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l 94 (328)
T PRK05707 18 RGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVREL 94 (328)
T ss_pred CCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHH
Confidence 35677789999999999999999999988431 122211100 0 01122345555
Q ss_pred HHHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
.+.+. .....|++||++|.+. ....+.|++.+++ ++.+.++|.+|+.++.+.+.++| |+.
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~ 158 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ 158 (328)
T ss_pred HHHHhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce
Confidence 44443 2345799999999984 3456799999996 34567888999999999999999 985
Q ss_pred eEEEecCCCHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~ 163 (541)
.+.|++|+.++..+.|....
T Consensus 159 -~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 159 -QQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred -eeeCCCcCHHHHHHHHHHhc
Confidence 69999999999888887653
No 185
>PHA02244 ATPase-like protein
Probab=99.16 E-value=2.7e-10 Score=109.62 Aligned_cols=125 Identities=21% Similarity=0.314 Sum_probs=82.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcc----ccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPE----LLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
..+..+||+||+|||||++++++|..++.+++.++... +.+ +..........-+..+. ...++|+|||++.+.+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p 194 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDASIP 194 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcCCH
Confidence 34567999999999999999999999999999998431 111 00110011111122222 2458999999998743
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcC---------CCCCCCeEEEEecCCC-----------CCCCccccCCCCCCeEEEec
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDG---------FEGRGGVFLMAATNRP-----------DIIDPAVMRPGRFDRILFVN 148 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~---------~~~~~~~~vi~t~~~~-----------~~l~~~l~~~~r~~~~i~~~ 148 (541)
. .+..|...++. .....++.+|+|+|.+ ..+++++++ ||. .|++.
T Consensus 195 ~------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~d 259 (383)
T PHA02244 195 E------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFD 259 (383)
T ss_pred H------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCC
Confidence 3 23344444432 1234578999999973 467899998 995 79999
Q ss_pred CCCHHH
Q psy7673 149 LPNEQD 154 (541)
Q Consensus 149 ~p~~~~ 154 (541)
.|+..|
T Consensus 260 yp~~~E 265 (383)
T PHA02244 260 YDEKIE 265 (383)
T ss_pred CCcHHH
Confidence 998433
No 186
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.15 E-value=7.6e-11 Score=100.90 Aligned_cols=110 Identities=27% Similarity=0.373 Sum_probs=70.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc------cccCc--hHHHHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN------MYLGE--SERAVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~------~~~~~--~~~~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
+|+|+||||||||++++.+|+.++.+++.++|..... .+.-. ........+..+. ..+.+++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 5899999999999999999999999999999876432 11100 0000000000000 145899999999863
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCC-----------CCC------CeEEEEecCCCC----CCCccccCCCCC
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDGFE-----------GRG------GVFLMAATNRPD----IIDPAVMRPGRF 141 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~------~~~vi~t~~~~~----~l~~~l~~~~r~ 141 (541)
..++..|...++.-. ... ++.+|+|+|..+ .+++++++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 345666666666420 111 389999999887 79999998 87
No 187
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.15 E-value=1.6e-10 Score=113.73 Aligned_cols=138 Identities=28% Similarity=0.424 Sum_probs=93.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccccc--ccCchHHHHH----HHHHHHHh--cCC--ceEEEc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM--YLGESERAVR----QCFQRARN--SQP--CVIFFD 81 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~--~~~~~~~~~~----~~~~~~~~--~~~--~il~iD 81 (541)
.-...++||.||||||||++++.+|..++.+++.++|...... ..|...-... ..+..... ... +++++|
T Consensus 40 ~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~D 119 (329)
T COG0714 40 LLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLD 119 (329)
T ss_pred HHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEe
Confidence 3456789999999999999999999999999999999854432 1222111111 00100000 000 399999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHHHHhcC----------CCCCCCeEEEEecC-----CCCCCCccccCCCCCCeEEE
Q psy7673 82 EIDALCPKRSSLGDNNSSMRIVNQLLTEMDG----------FEGRGGVFLMAATN-----RPDIIDPAVMRPGRFDRILF 146 (541)
Q Consensus 82 e~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~----------~~~~~~~~vi~t~~-----~~~~l~~~l~~~~r~~~~i~ 146 (541)
||+...+ .+++.|+..+++ ..-+..++||+|.| ....+++++++ ||...+.
T Consensus 120 EInra~p------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~ 185 (329)
T COG0714 120 EINRAPP------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIY 185 (329)
T ss_pred ccccCCH------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEe
Confidence 9998743 456677777776 22335689999999 44568999999 9988999
Q ss_pred ecCC-CHHHHHHHHHHHH
Q psy7673 147 VNLP-NEQDRKEILLALT 163 (541)
Q Consensus 147 ~~~p-~~~~r~~il~~~~ 163 (541)
+++| +.++...++....
T Consensus 186 v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 186 VDYPDSEEEERIILARVG 203 (329)
T ss_pred cCCCCchHHHHHHHHhCc
Confidence 9999 5555555554443
No 188
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.3e-09 Score=112.86 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=112.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------------------------cEEEEeCccccccccCchHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGI-------------------------NFISVKGPELLNMYLGESERAVRQ 65 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~-------------------------~~~~i~~~~l~~~~~~~~~~~~~~ 65 (541)
..+.+..+||+||+|+|||++++.+|+.+.+ +++++++.+ ......++.
T Consensus 35 ~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~ 108 (614)
T PRK14971 35 TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRN 108 (614)
T ss_pred cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccc------cCCHHHHHH
Confidence 3456777999999999999999999998753 222222211 111334555
Q ss_pred HHHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCC
Q psy7673 66 CFQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRF 141 (541)
Q Consensus 66 ~~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~ 141 (541)
+...+.. ....|++|||+|.+.. ...+.|++.++... ...++|.+|+.+..+.+.+++ |+
T Consensus 109 li~~~~~~P~~~~~KVvIIdea~~Ls~------------~a~naLLK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc 172 (614)
T PRK14971 109 LIEQVRIPPQIGKYKIYIIDEVHMLSQ------------AAFNAFLKTLEEPP--SYAIFILATTEKHKILPTILS--RC 172 (614)
T ss_pred HHHHHhhCcccCCcEEEEEECcccCCH------------HHHHHHHHHHhCCC--CCeEEEEEeCCchhchHHHHh--hh
Confidence 5554432 2346999999999842 34678888888643 345677777777888899998 87
Q ss_pred CeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q psy7673 142 DRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQ 204 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~ 204 (541)
. .++|..++.++...+++..+...+.. .+.-.+..++ ..+.| +.+++.++++.....
T Consensus 173 ~-iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La--~~s~g-dlr~al~~Lekl~~y 229 (614)
T PRK14971 173 Q-IFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIA--QKADG-GMRDALSIFDQVVSF 229 (614)
T ss_pred h-eeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHHh
Confidence 4 79999999999999999998875421 1222244555 44444 677777777765443
No 189
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.14 E-value=4.8e-10 Score=101.22 Aligned_cols=130 Identities=19% Similarity=0.251 Sum_probs=90.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
..+.+..+||+||+|+|||++++.+++.+... +..++... . ......++.+
T Consensus 10 ~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i 84 (188)
T TIGR00678 10 KGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVREL 84 (188)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHH
Confidence 44667889999999999999999999987432 12211110 0 1112344455
Q ss_pred HHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
.+.+.. ....|++|||+|.+.. ..++.|+..++... ....+|.+++.+..+.+++++ |+
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~l~~------------~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~- 147 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAERMNE------------AAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RC- 147 (188)
T ss_pred HHHHccCcccCCeEEEEEechhhhCH------------HHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hc-
Confidence 555433 3457999999999843 23567888887633 345666667777889999998 77
Q ss_pred eEEEecCCCHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLAL 162 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~ 162 (541)
..+.|.+|+.++..++++..
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc
Confidence 48999999999998888775
No 190
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=2.8e-09 Score=102.43 Aligned_cols=194 Identities=15% Similarity=0.232 Sum_probs=113.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC-CcEEEE---eCc----ccc----ccc----cCc-hHH---HHHHHH-HHHHhc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAG-INFISV---KGP----ELL----NMY----LGE-SER---AVRQCF-QRARNS 73 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~-~~~~~i---~~~----~l~----~~~----~~~-~~~---~~~~~~-~~~~~~ 73 (541)
+..++|+||+|+|||++++.+++.+. ..+... ++. ++. ..+ .+. ... .+...+ ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 34688999999999999999999875 222221 111 110 000 011 111 122222 222345
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC--CCCCeEEEEecCC--CCCCC----ccccCCCCCCeEE
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--GRGGVFLMAATNR--PDIID----PAVMRPGRFDRIL 145 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~vi~t~~~--~~~l~----~~l~~~~r~~~~i 145 (541)
.+.+|+|||+|.+... .+..+. .+.... ....+.|+.+... .+.+. ..+.+ |+...+
T Consensus 123 ~~~vliiDe~~~l~~~------------~~~~l~-~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 123 KRALLVVDEAQNLTPE------------LLEELR-MLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CCeEEEEECcccCCHH------------HHHHHH-HHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 5679999999987421 122222 222211 1222334444332 11111 23444 777789
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCC--CCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCC
Q psy7673 146 FVNLPNEQDRKEILLALTKQGKDP--MMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDD 223 (541)
Q Consensus 146 ~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~ 223 (541)
++++.+.++..+++...+...... .....-.++.+. +.+.|. ++.|..+++.+...+..+..+
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~--~~s~G~-p~~i~~l~~~~~~~a~~~~~~------------ 252 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIH--RFSRGI-PRLINILCDRLLLSAFLEEKR------------ 252 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHH--HHcCCc-ccHHHHHHHHHHHHHHHcCCC------------
Confidence 999999999999999998754311 111222344555 678885 678999999999988765432
Q ss_pred ccccccCHHHHHHHHHhcC
Q psy7673 224 TEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 224 ~~~~~i~~~d~~~al~~~~ 242 (541)
.|+.++++.++..+.
T Consensus 253 ----~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 253 ----EIGGEEVREVIAEID 267 (269)
T ss_pred ----CCCHHHHHHHHHHhh
Confidence 499999999998764
No 191
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.12 E-value=1.3e-09 Score=105.71 Aligned_cols=137 Identities=16% Similarity=0.131 Sum_probs=88.1
Q ss_pred CceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCC-----------CCCCCeEEEEecCCCC-CCCccccCCCCCC
Q psy7673 75 PCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF-----------EGRGGVFLMAATNRPD-IIDPAVMRPGRFD 142 (541)
Q Consensus 75 ~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-----------~~~~~~~vi~t~~~~~-~l~~~l~~~~r~~ 142 (541)
.++|+|||++.+.+. .+..|++.++.- .-+.++++|+|.|..+ .+++.+.. ||.
T Consensus 145 ~GiL~lDEInrL~~~------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~ 210 (350)
T CHL00081 145 RGILYVDEVNLLDDH------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFG 210 (350)
T ss_pred CCEEEecChHhCCHH------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhC
Confidence 479999999998543 445666666431 1234578888888654 58999998 999
Q ss_pred eEEEecCCC-HHHHHHHHHHHHhcCCCCC-------CCCCCCHHHHHhh---------------------hhcCCCCHHH
Q psy7673 143 RILFVNLPN-EQDRKEILLALTKQGKDPM-------MGEDVDFDKIAAD---------------------ERCEGFSGAD 193 (541)
Q Consensus 143 ~~i~~~~p~-~~~r~~il~~~~~~~~~~~-------~~~~~~~~~l~~~---------------------~~~~g~~~~d 193 (541)
..+.+..|+ .+++.+|++........+. ....+..+.+..+ ..+.--++|-
T Consensus 211 l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra 290 (350)
T CHL00081 211 MHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRG 290 (350)
T ss_pred ceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChH
Confidence 999999997 5999999988643211000 0011111222111 1122235666
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 194 LEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 194 l~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
-..+++-|...|..+.++. ++.+|+..+...+
T Consensus 291 ~i~l~raArA~Aal~GR~~----------------V~pdDv~~~a~~v 322 (350)
T CHL00081 291 DIVTNRAAKALAAFEGRTE----------------VTPKDIFKVITLC 322 (350)
T ss_pred HHHHHHHHHHHHHHcCCCC----------------CCHHHHHHHHHHH
Confidence 7777777777777776654 8899999887755
No 192
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=2.1e-09 Score=105.45 Aligned_cols=169 Identities=15% Similarity=0.166 Sum_probs=105.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-------EEE-EeCcc--------------c--cc-c--c------cC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN-------FIS-VKGPE--------------L--LN-M--Y------LG 57 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~-------~~~-i~~~~--------------l--~~-~--~------~~ 57 (541)
..+.+..+||+||+|+|||++++.+++.+.+. ... ..|.. + +. . . ..
T Consensus 41 ~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~ 120 (351)
T PRK09112 41 EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTA 120 (351)
T ss_pred cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeeccccccccccccc
Confidence 34566789999999999999999999988441 110 11100 0 00 0 0 00
Q ss_pred chHHHHHHHHHHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCc
Q psy7673 58 ESERAVRQCFQRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDP 133 (541)
Q Consensus 58 ~~~~~~~~~~~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~ 133 (541)
.....++.+..... .....|++|||+|.+.. ...+.|++.+++. ..+.++|..++.++.+.+
T Consensus 121 I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~------------~aanaLLk~LEEp--p~~~~fiLit~~~~~llp 186 (351)
T PRK09112 121 ITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR------------NAANAILKTLEEP--PARALFILISHSSGRLLP 186 (351)
T ss_pred CCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH------------HHHHHHHHHHhcC--CCCceEEEEECChhhccH
Confidence 01122333333322 23457999999999842 3456788888863 334566666777888889
Q ss_pred cccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 134 AVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 134 ~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
.+++ |+ ..+.|++|+.++..++++...... . .++.....++ ..+.| +++...++++....
T Consensus 187 tIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~--~~s~G-~pr~Al~ll~~~~~ 246 (351)
T PRK09112 187 TIRS--RC-QPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALL--QRSKG-SVRKALLLLNYGGL 246 (351)
T ss_pred HHHh--hc-cEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHH--HHcCC-CHHHHHHHHhcCcH
Confidence 9998 88 599999999999999998843221 1 1111133344 45555 77777777765543
No 193
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.11 E-value=1.3e-09 Score=105.94 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=88.5
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCC-CCCccccCCCCC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-----------GRGGVFLMAATNRPD-IIDPAVMRPGRF 141 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~vi~t~~~~~-~l~~~l~~~~r~ 141 (541)
..++|||||++.+.+ ..+..|++.++.-. -..++++|+|.|..+ .+++.+.. ||
T Consensus 131 ~~GvL~lDEi~~L~~------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf 196 (337)
T TIGR02030 131 NRGILYIDEVNLLED------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RF 196 (337)
T ss_pred cCCEEEecChHhCCH------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hc
Confidence 347999999999843 34556777665321 124578888887554 68899998 99
Q ss_pred CeEEEecCCCH-HHHHHHHHHHHhcCCCCC-----C--C---------------CC--CC---HHHHH-hhhhcCCCCHH
Q psy7673 142 DRILFVNLPNE-QDRKEILLALTKQGKDPM-----M--G---------------ED--VD---FDKIA-ADERCEGFSGA 192 (541)
Q Consensus 142 ~~~i~~~~p~~-~~r~~il~~~~~~~~~~~-----~--~---------------~~--~~---~~~l~-~~~~~~g~~~~ 192 (541)
...+.+..|+. ++|.+|++.......... . . .. ++ ...++ ....+..-++|
T Consensus 197 ~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~R 276 (337)
T TIGR02030 197 GLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLR 276 (337)
T ss_pred ceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCc
Confidence 99999998875 889999988533210000 0 0 00 00 11111 01122222567
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 193 DLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 193 dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
--..+++-|...|..+.++. ++.+|+..+..-+
T Consensus 277 a~i~l~raArA~Aal~GR~~----------------V~~dDv~~~a~~v 309 (337)
T TIGR02030 277 GELTLNRAAKALAAFEGRTE----------------VTVDDIRRVAVLA 309 (337)
T ss_pred HHHHHHHHHHHHHHHcCCCC----------------CCHHHHHHHHHHH
Confidence 77788888888888776654 8999999887755
No 194
>KOG1514|consensus
Probab=99.10 E-value=1.9e-09 Score=109.48 Aligned_cols=220 Identities=19% Similarity=0.229 Sum_probs=140.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCcccccc----------ccCch------HHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELLNM----------YLGES------ERAVRQCFQ 68 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~~~----------~~~~~------~~~~~~~~~ 68 (541)
+..++|.|-||||||.+++.+-+++ ...+++||+..+.+. +.++. -..+..-|.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 4478999999999999999998866 467899998776542 11111 111222222
Q ss_pred HH-HhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCccccCCCCCC-
Q psy7673 69 RA-RNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI----IDPAVMRPGRFD- 142 (541)
Q Consensus 69 ~~-~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~----l~~~l~~~~r~~- 142 (541)
.. ....++||+|||+|.|+...| .+++.|+++-. ..+.+++||+.+|..+. |.....+ |++
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~Q---------dVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~ 568 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRSQ---------DVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGL 568 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhcccH---------HHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccc
Confidence 11 123568999999999986533 35555555432 35667899998886542 2233333 665
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCC--HHHHHHHHHHHHHHHHHHHhhcccCCCcCC
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFS--GADLEQLVKEAREQAILEIVNSVENDDQAG 220 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~ 220 (541)
..|.|.+++.++..+|+...+.... ...+-..+.++ +..+..| .+....+|++|...|..+....
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~~---~f~~~aielva--rkVAavSGDaRraldic~RA~Eia~~~~~~~-------- 635 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGLD---AFENKAIELVA--RKVAAVSGDARRALDICRRAAEIAEERNVKG-------- 635 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcchh---hcchhHHHHHH--HHHHhccccHHHHHHHHHHHHHHhhhhcccc--------
Confidence 6699999999999999999888642 11222233334 4444443 4667788999988887775411
Q ss_pred CCCccccccCHHHHHHHHHhcCCCCChhhhhhhHHHhhhhc
Q psy7673 221 IDDTEQVTIGFRHFDIALKRIKPSVSKADCKNYESLKQRYT 261 (541)
Q Consensus 221 ~~~~~~~~i~~~d~~~al~~~~~~~s~~~~~~~e~~~~~~~ 261 (541)
.......++.-|+.+|++.+..+.-...+....-+.+.|.
T Consensus 636 -k~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~k~fl 675 (767)
T KOG1514|consen 636 -KLAVSQLVGILHVMEAINEMLASPYIKALKGLSFLQKIFL 675 (767)
T ss_pred -cccccceeehHHHHHHHHHHhhhhHHHHhcchHHHHHHHH
Confidence 1222346899999999999877644444444444444333
No 195
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.10 E-value=1.5e-09 Score=114.23 Aligned_cols=196 Identities=17% Similarity=0.162 Sum_probs=121.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEeCccccccccCchH--HHHH-H--HHH--HHHhcCCceEEEcCCccc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGI--NFISVKGPELLNMYLGESE--RAVR-Q--CFQ--RARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~--~~~~i~~~~l~~~~~~~~~--~~~~-~--~~~--~~~~~~~~il~iDe~d~l 86 (541)
.+|||.|++|||||++++++++.++. +|+.+++.......+|... ..+. . .|. .......++|||||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998854 5888875322222233321 0000 0 000 001123369999999998
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCC---CCCccccCCCCCCeEEEec-CCC
Q psy7673 87 CPKRSSLGDNNSSMRIVNQLLTEMDGFE-----------GRGGVFLMAATNRPD---IIDPAVMRPGRFDRILFVN-LPN 151 (541)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~vi~t~~~~~---~l~~~l~~~~r~~~~i~~~-~p~ 151 (541)
.+ ..+..|+..++.-. -..++.||+|+|..+ .+++.+.. ||...+.+. .|+
T Consensus 97 ~~------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 97 DD------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred CH------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 53 35567777775421 124589999998764 68889988 999777766 567
Q ss_pred HHHHHHHHHHHHhcCCCC---------------------CCCCCCCHHHHHhhhhcCCCC-HHHHHHHHHHHHHHHHHHH
Q psy7673 152 EQDRKEILLALTKQGKDP---------------------MMGEDVDFDKIAADERCEGFS-GADLEQLVKEAREQAILEI 209 (541)
Q Consensus 152 ~~~r~~il~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~g~~-~~dl~~l~~~a~~~a~~~~ 209 (541)
.++|.+|++..+...... ....+..+..+.......|.+ .|-...+++-|...|..+.
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~g 242 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHG 242 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhC
Confidence 788999998866321100 000000111222111223443 5666677777877777776
Q ss_pred hhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 210 VNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
++. ++.+|+..|...+
T Consensus 243 r~~----------------V~~~Dv~~a~~lv 258 (589)
T TIGR02031 243 RTE----------------VTEEDLKLAVELV 258 (589)
T ss_pred CCC----------------CCHHHHHHHHHHH
Confidence 654 9999999998765
No 196
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.08 E-value=1.3e-09 Score=93.64 Aligned_cols=126 Identities=31% Similarity=0.452 Sum_probs=80.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEeCcccccc--------------ccCchHHHHHHHHHHHHhcCCce
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGIN---FISVKGPELLNM--------------YLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~---~~~i~~~~l~~~--------------~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
+..++|+||||||||++++.++..+... ++.+++...... ............+..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5689999999999999999999999664 888888754322 12334555667777777777899
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHH--HHHhcCCCCCCCeEEEEecCC-CCCCCccccCCCCCCeEEEecCC
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQL--LTEMDGFEGRGGVFLMAATNR-PDIIDPAVMRPGRFDRILFVNLP 150 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l--~~~l~~~~~~~~~~vi~t~~~-~~~l~~~l~~~~r~~~~i~~~~p 150 (541)
|+|||++.+...... ...... ...........+..+|+++|. ....+..+.. |+...+.+..+
T Consensus 82 iiiDei~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE--------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH--------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999998644211 000000 000011122345688888885 3344455554 77777776544
No 197
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.3e-09 Score=98.51 Aligned_cols=84 Identities=23% Similarity=0.366 Sum_probs=64.0
Q ss_pred CceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC--------CCCCeEEEEecC----CCCCCCccccCCCCCC
Q psy7673 75 PCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--------GRGGVFLMAATN----RPDIIDPAVMRPGRFD 142 (541)
Q Consensus 75 ~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~vi~t~~----~~~~l~~~l~~~~r~~ 142 (541)
.+|+||||||.++......+....-.-++..|+-.+++.. ....+.||++.- .|++|-|.|.- ||+
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCc
Confidence 4699999999999887643323344556777888887642 334588888864 57778888876 999
Q ss_pred eEEEecCCCHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILL 160 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~ 160 (541)
-.+++...+.++...||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999998883
No 198
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.06 E-value=5.1e-09 Score=104.62 Aligned_cols=199 Identities=18% Similarity=0.171 Sum_probs=109.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEeCcc-ccccccCch-HHHH--HHHHHHHHhc---CCceEEEcC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGI--NFISVKGPE-LLNMYLGES-ERAV--RQCFQRARNS---QPCVIFFDE 82 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~--~~~~i~~~~-l~~~~~~~~-~~~~--~~~~~~~~~~---~~~il~iDe 82 (541)
.-...++||.||||||||++|++++..++. +|..+++.- ...+.+|.. -... ...|...... ...+||+||
T Consensus 36 alag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDE 115 (498)
T PRK13531 36 ALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDE 115 (498)
T ss_pred HccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecc
Confidence 345678999999999999999999997743 444444431 111222221 0000 1112111110 225999999
Q ss_pred CccccCCCCCCCCCChhHHHHHHHHHHhcCCC--------CCCCeEEEEecCCCC---CCCccccCCCCCCeEEEecCCC
Q psy7673 83 IDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--------GRGGVFLMAATNRPD---IIDPAVMRPGRFDRILFVNLPN 151 (541)
Q Consensus 83 ~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~vi~t~~~~~---~l~~~l~~~~r~~~~i~~~~p~ 151 (541)
|+.+. ...++.|+..+++-. .-+..+++++||... ...+++.. ||...+.+++|+
T Consensus 116 I~ras------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~ 181 (498)
T PRK13531 116 IWKAG------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQ 181 (498)
T ss_pred cccCC------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCC
Confidence 98764 346678888874321 111134444446321 12247777 998889999997
Q ss_pred -HHHHHHHHHHHHhc-CCCCCCCCCCCHHHHHh---------------------hh---hc---CCCCHHHHHHHHHHHH
Q psy7673 152 -EQDRKEILLALTKQ-GKDPMMGEDVDFDKIAA---------------------DE---RC---EGFSGADLEQLVKEAR 202 (541)
Q Consensus 152 -~~~r~~il~~~~~~-~~~~~~~~~~~~~~l~~---------------------~~---~~---~g~~~~dl~~l~~~a~ 202 (541)
.++..+++...... .........+..+++.. .. .+ ...|+|--..+++-+.
T Consensus 182 ~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~ak 261 (498)
T PRK13531 182 DKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQ 261 (498)
T ss_pred chHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHH
Confidence 46667787664221 11011111122222210 01 01 1267777777878777
Q ss_pred HHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 203 EQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
..|....++. ++.+|+. .+...
T Consensus 262 A~A~l~GR~~----------------V~p~Dv~-ll~~v 283 (498)
T PRK13531 262 ASAFFSGRDA----------------IAPIDLI-LLKDC 283 (498)
T ss_pred HHHHHCCCCC----------------CCHHHHH-HhHHH
Confidence 7777766554 8888888 54443
No 199
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.05 E-value=1.1e-09 Score=116.50 Aligned_cols=197 Identities=21% Similarity=0.239 Sum_probs=117.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC-----------------------------------CcEEEEeCccccccccCch-
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAG-----------------------------------INFISVKGPELLNMYLGES- 59 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~-----------------------------------~~~~~i~~~~l~~~~~~~~- 59 (541)
.+|||.|++|||||++++++++.+. .+|+.+.++......+|..
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 4699999999999999999998872 3455554443222222221
Q ss_pred -HHHHHH---HHH--HHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC-----------CCCCeEEE
Q psy7673 60 -ERAVRQ---CFQ--RARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-----------GRGGVFLM 122 (541)
Q Consensus 60 -~~~~~~---~~~--~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~vi 122 (541)
...+.. .+. .+.....++|||||++.+.+ ..++.|+..++.-. -..++.+|
T Consensus 106 ~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lI 173 (633)
T TIGR02442 106 IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLI 173 (633)
T ss_pred HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH------------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEE
Confidence 111100 000 00112336999999999843 45667777776321 12458999
Q ss_pred EecCCC-CCCCccccCCCCCCeEEEecCCC-HHHHHHHHHHHHhcCCCCC----------------------CCCCC---
Q psy7673 123 AATNRP-DIIDPAVMRPGRFDRILFVNLPN-EQDRKEILLALTKQGKDPM----------------------MGEDV--- 175 (541)
Q Consensus 123 ~t~~~~-~~l~~~l~~~~r~~~~i~~~~p~-~~~r~~il~~~~~~~~~~~----------------------~~~~~--- 175 (541)
+|+|.. ..+.+.|++ ||...+.++.+. .+++.++++.......... ....+
T Consensus 174 at~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is 251 (633)
T TIGR02442 174 GTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRIS 251 (633)
T ss_pred EecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCC
Confidence 998854 358888988 999888888764 5778888876543111000 00000
Q ss_pred --CHHHHHhhhhcCCC-CHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 176 --DFDKIAADERCEGF-SGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 176 --~~~~l~~~~~~~g~-~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
....+.......|. +.|-...+++-|...|..+..+. ++.+|+.+|+..+-
T Consensus 252 ~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~----------------V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 252 DSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRR----------------VTAEDVREAAELVL 305 (633)
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCc----------------CCHHHHHHHHHHHh
Confidence 11112211112244 35666677777777777666544 99999999988653
No 200
>KOG2227|consensus
Probab=99.02 E-value=1.4e-08 Score=98.61 Aligned_cols=222 Identities=17% Similarity=0.209 Sum_probs=134.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCcccccc----------c-----cCchHHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNM----------Y-----LGESERAVRQCFQRA 70 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~----------~-----~~~~~~~~~~~~~~~ 70 (541)
....+.++++.|.||||||.+...+-... ....+++||.++... + ...........|..-
T Consensus 171 e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h 250 (529)
T KOG2227|consen 171 ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKH 250 (529)
T ss_pred hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 45677889999999999999999776555 335689999875321 0 011112222233322
Q ss_pred -HhcC-CceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCcc---ccC-CCCCCeE
Q psy7673 71 -RNSQ-PCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPA---VMR-PGRFDRI 144 (541)
Q Consensus 71 -~~~~-~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~---l~~-~~r~~~~ 144 (541)
.... +-++++||+|.|....+. .+..++.+ .. ..+.++++|+.+|..+.-|.. |.. .+.-+..
T Consensus 251 ~~q~k~~~llVlDEmD~L~tr~~~---------vLy~lFew-p~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~ 319 (529)
T KOG2227|consen 251 TKQSKFMLLLVLDEMDHLITRSQT---------VLYTLFEW-PK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKL 319 (529)
T ss_pred HhcccceEEEEechhhHHhhcccc---------eeeeehhc-cc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCce
Confidence 2222 568889999999844332 22333322 11 234568999999976543322 221 2234578
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCH--HHHHHHHHHHHHHHHHHHhhcccCCCcCCCC
Q psy7673 145 LFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSG--ADLEQLVKEAREQAILEIVNSVENDDQAGID 222 (541)
Q Consensus 145 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 222 (541)
+.|++++.++..+||+..+....... .-+..++..| ++..+.|| |.+..+|++|...+..+....-.........
T Consensus 320 l~F~PYTk~qI~~Il~~rl~~~~t~~-~~~~Aie~~A--rKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~ 396 (529)
T KOG2227|consen 320 LVFPPYTKDQIVEILQQRLSEESTSI-FLNAAIELCA--RKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTS 396 (529)
T ss_pred eeecCCCHHHHHHHHHHHHhcccccc-cchHHHHHHH--HHhccCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Confidence 99999999999999999998643211 1122344555 77888776 3344567788777766554331111112222
Q ss_pred CccccccCHHHHHHHHHhcCCCCC
Q psy7673 223 DTEQVTIGFRHFDIALKRIKPSVS 246 (541)
Q Consensus 223 ~~~~~~i~~~d~~~al~~~~~~~s 246 (541)
......|..+++..+++++-.+-+
T Consensus 397 p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 397 PEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred cccccccchHHHHHHhhhhccChh
Confidence 333366789999999998865533
No 201
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.00 E-value=6.1e-09 Score=99.29 Aligned_cols=76 Identities=25% Similarity=0.343 Sum_probs=48.8
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC------------CCCCCCccccCCCCC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN------------RPDIIDPAVMRPGRF 141 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~------------~~~~l~~~l~~~~r~ 141 (541)
-|+||||||+|.|. -...+.|-+.++. .-.+ +||.+|| .|.-+|..|++ |+
T Consensus 278 vpGVLFIDEvHmLD------------iEcFsfLnralEs--~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl 340 (398)
T PF06068_consen 278 VPGVLFIDEVHMLD------------IECFSFLNRALES--ELSP-IIILATNRGITKIRGTDIISPHGIPLDLLD--RL 340 (398)
T ss_dssp EE-EEEEESGGGSB------------HHHHHHHHHHHTS--TT---EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE
T ss_pred ecceEEecchhhcc------------HHHHHHHHHHhcC--CCCc-EEEEecCceeeeccCccCcCCCCCCcchHh--hc
Confidence 46899999999983 2345555556663 2233 5555556 23458888988 87
Q ss_pred CeEEEecCCCHHHHHHHHHHHHhcCC
Q psy7673 142 DRILFVNLPNEQDRKEILLALTKQGK 167 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~il~~~~~~~~ 167 (541)
.+|...+++.+|..+|++..+...+
T Consensus 341 -lII~t~py~~~ei~~Il~iR~~~E~ 365 (398)
T PF06068_consen 341 -LIIRTKPYSEEEIKQILKIRAKEED 365 (398)
T ss_dssp -EEEEE----HHHHHHHHHHHHHHCT
T ss_pred -EEEECCCCCHHHHHHHHHhhhhhhc
Confidence 5899999999999999999999753
No 202
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.1e-08 Score=98.65 Aligned_cols=136 Identities=16% Similarity=0.196 Sum_probs=95.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE--EEEeCccc----------------cccc--cCchHHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINF--ISVKGPEL----------------LNMY--LGESERAVRQCFQRA 70 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~--~~i~~~~l----------------~~~~--~~~~~~~~~~~~~~~ 70 (541)
..+.+..+||+||+|+||+++++.+|+.+-+.- -.-.|... +... .......++.+...+
T Consensus 20 ~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~ 99 (325)
T PRK06871 20 QGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKV 99 (325)
T ss_pred cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHH
Confidence 456778999999999999999999999873311 00112111 0000 011233445544443
Q ss_pred H----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEE
Q psy7673 71 R----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILF 146 (541)
Q Consensus 71 ~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~ 146 (541)
. .....|++||++|.+. ....+.|++.+++ ++.++++|.+|+.++.+.+.++| |+. .+.
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~-~~~ 162 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ-TWL 162 (325)
T ss_pred hhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce-EEe
Confidence 3 2344799999999984 3456799999995 55667888899999999999998 884 889
Q ss_pred ecCCCHHHHHHHHHHHH
Q psy7673 147 VNLPNEQDRKEILLALT 163 (541)
Q Consensus 147 ~~~p~~~~r~~il~~~~ 163 (541)
|++|+.++..+.|....
T Consensus 163 ~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 163 IHPPEEQQALDWLQAQS 179 (325)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999888887653
No 203
>KOG0991|consensus
Probab=98.99 E-value=1.2e-09 Score=96.09 Aligned_cols=136 Identities=21% Similarity=0.312 Sum_probs=89.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh-C----CcEEEEeCccccccccCchHHHHHHHHHHHHh----cCCceEEEcC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA-G----INFISVKGPELLNMYLGESERAVRQCFQRARN----SQPCVIFFDE 82 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~-~----~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~il~iDe 82 (541)
.+.-.+++|.||||+||||.+.++|+++ | --+.++|+++-.+- .....--..|.+-+- .+-.|+++||
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDE 121 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDE 121 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc---HHHHHHHHHHHHhhccCCCCceeEEEeec
Confidence 3456689999999999999999999988 3 24677787764321 112222233444332 2236999999
Q ss_pred CccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHH
Q psy7673 83 IDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLAL 162 (541)
Q Consensus 83 ~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~ 162 (541)
+|++... .++.|-+.++-+++.. .+..+||..+++-+.+.+ |+. .+.+...+..+...-|...
T Consensus 122 ADSMT~g------------AQQAlRRtMEiyS~tt--RFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v 184 (333)
T KOG0991|consen 122 ADSMTAG------------AQQALRRTMEIYSNTT--RFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEV 184 (333)
T ss_pred cchhhhH------------HHHHHHHHHHHHcccc--hhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHH
Confidence 9998533 2345555555544444 566777877888888888 875 6667777776666666655
Q ss_pred HhcCC
Q psy7673 163 TKQGK 167 (541)
Q Consensus 163 ~~~~~ 167 (541)
+....
T Consensus 185 ~k~Ek 189 (333)
T KOG0991|consen 185 AKAEK 189 (333)
T ss_pred HHHhC
Confidence 55543
No 204
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=8.5e-09 Score=101.82 Aligned_cols=163 Identities=21% Similarity=0.186 Sum_probs=102.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE-E----------E----eCc-----------cc--ccc-ccC----
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFI-S----------V----KGP-----------EL--LNM-YLG---- 57 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~-~----------i----~~~-----------~l--~~~-~~~---- 57 (541)
..+.+..+||+||+|+||++++.++|+.+-+.-- . + +|. ++ +.. ..+
T Consensus 37 ~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~ 116 (365)
T PRK07471 37 SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKR 116 (365)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccc
Confidence 4567778999999999999999999998732110 0 0 010 00 000 000
Q ss_pred ----chHHHHHHHHHHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy7673 58 ----ESERAVRQCFQRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD 129 (541)
Q Consensus 58 ----~~~~~~~~~~~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~ 129 (541)
.....++.+...+. ...+.|++|||+|.+. ....+.|++.+++. ..+.++|.+|+.++
T Consensus 117 ~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------------~~aanaLLK~LEep--p~~~~~IL~t~~~~ 182 (365)
T PRK07471 117 LRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------------ANAANALLKVLEEP--PARSLFLLVSHAPA 182 (365)
T ss_pred ccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC------------HHHHHHHHHHHhcC--CCCeEEEEEECCch
Confidence 01223444443332 2456899999999883 24567888888853 34457788888888
Q ss_pred CCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHH
Q psy7673 130 IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVK 199 (541)
Q Consensus 130 ~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~ 199 (541)
.+.+.+++ |+ ..+.|++|+.++..+++...... ..+.....++ ..+.| +++....+++
T Consensus 183 ~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~------~~~~~~~~l~--~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 183 RLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD------LPDDPRAALA--ALAEG-SVGRALRLAG 240 (365)
T ss_pred hchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc------CCHHHHHHHH--HHcCC-CHHHHHHHhc
Confidence 88889888 87 58999999999999999875421 1111112333 45555 6666665554
No 205
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.97 E-value=6.6e-11 Score=95.69 Aligned_cols=105 Identities=30% Similarity=0.430 Sum_probs=59.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCc-ccc-----ccc-cCchHH----HHHHHHHHHHhcCCceEEEcCCcc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGP-ELL-----NMY-LGESER----AVRQCFQRARNSQPCVIFFDEIDA 85 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~-~l~-----~~~-~~~~~~----~~~~~~~~~~~~~~~il~iDe~d~ 85 (541)
++||.|+||+|||++++++|+.++..+..|.+. ++. +.. ...... .-.-+| ..|+++||++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999999875 332 110 000000 000111 15999999998
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHhcCC---------CCCCCeEEEEecCCCC-----CCCccccCCCCCC
Q psy7673 86 LCPKRSSLGDNNSSMRIVNQLLTEMDGF---------EGRGGVFLMAATNRPD-----IIDPAVMRPGRFD 142 (541)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~l~~~---------~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~ 142 (541)
..+ +.++.|++.+.+- .-..++.||||-|+.+ .|++++++ ||-
T Consensus 74 app------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 74 APP------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp S-H------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred CCH------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 754 4566888877642 1234589999999765 58888887 873
No 206
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.95 E-value=4.9e-09 Score=111.74 Aligned_cols=135 Identities=21% Similarity=0.210 Sum_probs=83.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAG-------INFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~-------~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
..+|||+|+||||||.+++.+++... .++..++|...... ..........--..+.....++++|||++.+.
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~-~d~~tG~~~le~GaLvlAdgGtL~IDEidkms 570 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKF-NESDNGRAMIQPGAVVLANGGVCCIDELDKCH 570 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhh-cccccCcccccCCcEEEcCCCeEEecchhhCC
Confidence 44899999999999999999998653 33444444332110 00000000000000112334799999999984
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCC-------------CCCccccCCCCCCe
Q psy7673 88 PKRSSLGDNNSSMRIVNQLLTEMDGFE-----------GRGGVFLMAATNRPD-------------IIDPAVMRPGRFDR 143 (541)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~vi~t~~~~~-------------~l~~~l~~~~r~~~ 143 (541)
. ..+..|++.|++-. -+.++.|||++|+.. .+++.+++ ||+.
T Consensus 571 ~------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDL 636 (915)
T PTZ00111 571 N------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDL 636 (915)
T ss_pred H------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcE
Confidence 3 23456666665421 124689999999742 47899999 9986
Q ss_pred E-EEecCCCHHHHHHHHHHHHh
Q psy7673 144 I-LFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 144 ~-i~~~~p~~~~r~~il~~~~~ 164 (541)
+ +.++.|+.+.-..|.++++.
T Consensus 637 If~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 637 IYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred EEEecCCCChHHHHHHHHHHHH
Confidence 6 44568888777777776664
No 207
>KOG1942|consensus
Probab=98.95 E-value=1.3e-08 Score=92.63 Aligned_cols=131 Identities=21% Similarity=0.188 Sum_probs=80.9
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC-------------CCCCCccccCCCC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR-------------PDIIDPAVMRPGR 140 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~-------------~~~l~~~l~~~~r 140 (541)
-|++|||||+|.|. -.....|-+.++. +-..+||.++|+ |.-+++.+++ |
T Consensus 296 vPGVLFIDEVhMLD------------iEcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--R 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD------------IECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--R 358 (456)
T ss_pred cCcceEeeehhhhh------------hHHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--h
Confidence 57899999999882 2344555556653 222355555552 3457888887 7
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCC
Q psy7673 141 FDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAG 220 (541)
Q Consensus 141 ~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~ 220 (541)
+ .+|....++.++.++|++......+.. .++..+..++ .....-+-|-..+|+.-+...|.....
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~--~~e~a~~~l~--~~gt~tsLRy~vqLl~p~~~~ak~~g~---------- 423 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQ--VEEEALDLLA--EIGTSTSLRYAVQLLTPASILAKTNGR---------- 423 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcce--ecHHHHHHHH--hhccchhHHHHHHhcCHHHHHHHHcCC----------
Confidence 6 478888899999999999998865422 1222344444 433444455555665555455543332
Q ss_pred CCCccccccCHHHHHHHHHhcC
Q psy7673 221 IDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 221 ~~~~~~~~i~~~d~~~al~~~~ 242 (541)
..|..+|+++.-+.+-
T Consensus 424 ------~~i~v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 424 ------KEISVEDVEEVTELFL 439 (456)
T ss_pred ------ceeecccHHHHHHHHH
Confidence 2377777777766553
No 208
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=8.1e-09 Score=100.40 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=95.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE---EEeCccc----------------cc-cc---------------
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFI---SVKGPEL----------------LN-MY--------------- 55 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~---~i~~~~l----------------~~-~~--------------- 55 (541)
..+.+.++||+||+|+||+++++.+|+.+.+.-- .-.|... +. ..
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 3477889999999999999999999998844210 1112111 00 00
Q ss_pred -------------cCchHHHHHHHHHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCC
Q psy7673 56 -------------LGESERAVRQCFQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGG 118 (541)
Q Consensus 56 -------------~~~~~~~~~~~~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 118 (541)
.......++.+...+.. .+..|++||++|.+. ....+.|++.+++ ++.+
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE--Pp~~ 162 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE--PPPG 162 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC--CCcC
Confidence 00112334444444322 234699999999984 3456799999995 5667
Q ss_pred eEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHH
Q psy7673 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLAL 162 (541)
Q Consensus 119 ~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~ 162 (541)
+++|.+|+.++.|.|.++| |+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8999999999999999999 98 58999999999998888663
No 209
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.94 E-value=5.8e-09 Score=103.36 Aligned_cols=122 Identities=23% Similarity=0.437 Sum_probs=75.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCc-------EEEEeC----ccccccc----cCc--hHHHHHHHHHHHHh--cC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGIN-------FISVKG----PELLNMY----LGE--SERAVRQCFQRARN--SQ 74 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~-------~~~i~~----~~l~~~~----~~~--~~~~~~~~~~~~~~--~~ 74 (541)
...+++|+||||||||++++.+|..++.. .+.+.. .+++..+ .+. ....+..++..+.. ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 46789999999999999999999988431 222221 1222111 111 01123334445543 35
Q ss_pred CceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhc--------------------CCCCCCCeEEEEecCCCC----C
Q psy7673 75 PCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMD--------------------GFEGRGGVFLMAATNRPD----I 130 (541)
Q Consensus 75 ~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~--------------------~~~~~~~~~vi~t~~~~~----~ 130 (541)
|.+|+|||++.....+ +...++..++ .+.-+.++.||||.|..+ .
T Consensus 273 ~~vliIDEINRani~k-----------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~ 341 (459)
T PRK11331 273 KYVFIIDEINRANLSK-----------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAV 341 (459)
T ss_pred CcEEEEehhhccCHHH-----------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhh
Confidence 7899999998864332 2222222222 233456799999999776 6
Q ss_pred CCccccCCCCCCeEEEecC
Q psy7673 131 IDPAVMRPGRFDRILFVNL 149 (541)
Q Consensus 131 l~~~l~~~~r~~~~i~~~~ 149 (541)
+|.+++| ||. .|++.+
T Consensus 342 lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 342 VDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccHHHHh--hhh-eEEecC
Confidence 9999999 995 566654
No 210
>KOG2035|consensus
Probab=98.94 E-value=6.3e-09 Score=94.13 Aligned_cols=136 Identities=17% Similarity=0.246 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-C--CcEEEEeCcccc-------------c---------cccCchHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA-G--INFISVKGPELL-------------N---------MYLGESERAVRQCFQR 69 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~-~--~~~~~i~~~~l~-------------~---------~~~~~~~~~~~~~~~~ 69 (541)
-.++++|||+|+||-|.+.++-+++ | .+=..+....+. + +........++.++.+
T Consensus 34 ~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKe 113 (351)
T KOG2035|consen 34 FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKE 113 (351)
T ss_pred CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHH
Confidence 4689999999999999999999888 2 211111111110 0 1112234445666666
Q ss_pred HHhcC---------CceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCC
Q psy7673 70 ARNSQ---------PCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGR 140 (541)
Q Consensus 70 ~~~~~---------~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r 140 (541)
..+.+ -.+++|.|+|.|..+ .+..|-+.++.+.++. .+|.++|....+-+.+++ |
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~d------------AQ~aLRRTMEkYs~~~--RlIl~cns~SriIepIrS--R 177 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRD------------AQHALRRTMEKYSSNC--RLILVCNSTSRIIEPIRS--R 177 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHH------------HHHHHHHHHHHHhcCc--eEEEEecCcccchhHHhh--h
Confidence 54432 269999999999543 4457777888776654 777788888889999998 7
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHhcCC
Q psy7673 141 FDRILFVNLPNEQDRKEILLALTKQGK 167 (541)
Q Consensus 141 ~~~~i~~~~p~~~~r~~il~~~~~~~~ 167 (541)
+ ..+.++.|+.+|...++...+.+++
T Consensus 178 C-l~iRvpaps~eeI~~vl~~v~~kE~ 203 (351)
T KOG2035|consen 178 C-LFIRVPAPSDEEITSVLSKVLKKEG 203 (351)
T ss_pred e-eEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 7 4799999999999999999999865
No 211
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.94 E-value=4.7e-09 Score=103.87 Aligned_cols=129 Identities=26% Similarity=0.327 Sum_probs=91.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC------------------------CcEEEEeCccccccccCchHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG------------------------INFISVKGPELLNMYLGESERAVRQCFQ 68 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~------------------------~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 68 (541)
+.+..+||+||||+|||+++.++|+.+. -.+++++.++..... .....++.+..
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHH
Confidence 3444699999999999999999999885 367777776653321 12333444443
Q ss_pred HHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeE
Q psy7673 69 RARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRI 144 (541)
Q Consensus 69 ~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~ 144 (541)
.... ....|++|||+|.+.. ...+.++..++.- ..+..+|.+||.+..+-+.+++ |+. .
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lEep--~~~~~~il~~n~~~~il~tI~S--Rc~-~ 162 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLEEP--PKNTRFILITNDPSKILPTIRS--RCQ-R 162 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhccC--CCCeEEEEEcCChhhccchhhh--cce-e
Confidence 3322 2357999999999854 4567888888853 4456888999999999999998 874 7
Q ss_pred EEecCCCHHHHHHHHH
Q psy7673 145 LFVNLPNEQDRKEILL 160 (541)
Q Consensus 145 i~~~~p~~~~r~~il~ 160 (541)
+.|++|+........+
T Consensus 163 i~f~~~~~~~~i~~~e 178 (325)
T COG0470 163 IRFKPPSRLEAIAWLE 178 (325)
T ss_pred eecCCchHHHHHHHhh
Confidence 8888765554444443
No 212
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.93 E-value=2.7e-09 Score=106.18 Aligned_cols=177 Identities=24% Similarity=0.318 Sum_probs=102.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc-----ccCchHH----HHHHHHHHHHhcCCceEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM-----YLGESER----AVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~-----~~~~~~~----~~~~~~~~~~~~~~~il~i 80 (541)
.....|||+|++||||..+||+|.... +.+|+.+||..+-.. .+|.... ....-.........+.|||
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfL 241 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFL 241 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEe
Confidence 356689999999999999999998776 569999999866432 2222111 1111001112234479999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC--C-----CCCccccCCCCCCeE
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP--D-----IIDPAVMRPGRFDRI 144 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~--~-----~l~~~l~~~~r~~~~ 144 (541)
|||..+. ..++..|++.++.-. -+.++.||++||.. + .+-+.|.- |+ .+
T Consensus 242 DEI~~mp------------l~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RL-nV 306 (464)
T COG2204 242 DEIGEMP------------LELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RL-NV 306 (464)
T ss_pred eccccCC------------HHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hh-cc
Confidence 9998874 345667777776421 12358999999953 1 12233322 44 36
Q ss_pred EEecCCCHHHHHHHH----HHHHhcCCCC--CCCCCCCHHHHHhh--hhcCCCCHHHHHHHHHHHHHHH
Q psy7673 145 LFVNLPNEQDRKEIL----LALTKQGKDP--MMGEDVDFDKIAAD--ERCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 145 i~~~~p~~~~r~~il----~~~~~~~~~~--~~~~~~~~~~l~~~--~~~~g~~~~dl~~l~~~a~~~a 205 (541)
+.+..|...||.+-+ ++++.+.... .....++-+.+... ....| +.|+|+++++++...+
T Consensus 307 ~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPG-NVREL~N~ver~~il~ 374 (464)
T COG2204 307 VPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPG-NVRELENVVERAVILS 374 (464)
T ss_pred ceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCh-HHHHHHHHHHHHHhcC
Confidence 778888887777633 3333331110 11223333333210 11223 4577778877776555
No 213
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.93 E-value=1.3e-08 Score=99.55 Aligned_cols=127 Identities=22% Similarity=0.300 Sum_probs=78.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc-----cCchHHH-------HHHHHHHHHhcCCce
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY-----LGESERA-------VRQCFQRARNSQPCV 77 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~-----~~~~~~~-------~~~~~~~~~~~~~~i 77 (541)
.....|||+|++||||+++|+++.... +.+|+.+||..+.... +|..... -...|. ....++
T Consensus 20 ~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~---~a~gGt 96 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFE---RADGGT 96 (329)
T ss_pred CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchh---hCCCCE
Confidence 456779999999999999999998765 5799999998763221 1111000 001122 224589
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-------CCCCccccCCCCC
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP-------DIIDPAVMRPGRF 141 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~-------~~l~~~l~~~~r~ 141 (541)
|||||++.|.. ..+..|+..++.-. ...++.+|++|+.. ..+.+.|.. |+
T Consensus 97 L~Ldei~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 97 LFLDELATASL------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred EEeCChHhCCH------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 99999999853 34556666665421 12357888888743 123344544 55
Q ss_pred CeEEEecCCCHHHHHH
Q psy7673 142 DRILFVNLPNEQDRKE 157 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~ 157 (541)
. .+.+..|...+|.+
T Consensus 163 ~-~~~i~lPpLReR~e 177 (329)
T TIGR02974 163 A-FDVITLPPLRERQE 177 (329)
T ss_pred c-chhcCCCchhhhhh
Confidence 3 34566666666654
No 214
>KOG0741|consensus
Probab=98.92 E-value=1.3e-08 Score=99.81 Aligned_cols=146 Identities=22% Similarity=0.358 Sum_probs=103.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe-CccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVK-GPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
..+-.++||.||||+|||+||-.+|...+.+|+.+- ..++.+-....--..++.+|+.++++.-++|++||++.|..--
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v 614 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV 614 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc
Confidence 556678999999999999999999999999999764 4455443322333458899999999888999999999986321
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCC-CeEEEEecCCCCCCC-ccccCCCCCCeEEEecCCCH-HHHHHHHHH
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFEGRG-GVFLMAATNRPDIID-PAVMRPGRFDRILFVNLPNE-QDRKEILLA 161 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vi~t~~~~~~l~-~~l~~~~r~~~~i~~~~p~~-~~r~~il~~ 161 (541)
.- -....+-+++.|+-.+....+.+ +.+|++||...+-|. -.+.. .|+..+.++..+. ++..++++.
T Consensus 615 pI--GPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 615 PI--GPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cc--CchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 10 11245667788888887765554 467777777654332 23444 7888888876654 666666644
No 215
>PRK08116 hypothetical protein; Validated
Probab=98.90 E-value=3.8e-09 Score=100.14 Aligned_cols=133 Identities=23% Similarity=0.259 Sum_probs=77.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCc----hHHHHHHHHHHHHhcCCceEEEcCCcc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGE----SERAVRQCFQRARNSQPCVIFFDEIDA 85 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~il~iDe~d~ 85 (541)
..+.+++|+|++|||||+|+.++++++ +.++++++..++....... .......++.... ...+|+|||++.
T Consensus 112 ~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~ 189 (268)
T PRK08116 112 KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA 189 (268)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence 345689999999999999999999987 7889999987765442111 1111222333332 347999999965
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC-CCC----CCccccCCCCC---CeEEEecCCCHHHHHH
Q psy7673 86 LCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR-PDI----IDPAVMRPGRF---DRILFVNLPNEQDRKE 157 (541)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~-~~~----l~~~l~~~~r~---~~~i~~~~p~~~~r~~ 157 (541)
... .......|...++....+ +..+|.|||. ++. ++..+.+ |+ ...+.+.-++. |..
T Consensus 190 e~~----------t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~ 254 (268)
T PRK08116 190 ERD----------TEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKE 254 (268)
T ss_pred CCC----------CHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHH
Confidence 311 112233444455432222 2356666664 333 3555655 54 34566666654 444
Q ss_pred HHHHH
Q psy7673 158 ILLAL 162 (541)
Q Consensus 158 il~~~ 162 (541)
+.+..
T Consensus 255 ~~~ek 259 (268)
T PRK08116 255 IAKEK 259 (268)
T ss_pred HHHHH
Confidence 44433
No 216
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.88 E-value=3.4e-09 Score=103.59 Aligned_cols=174 Identities=25% Similarity=0.298 Sum_probs=100.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCccccccc-----cCchHHH-------HHHHHHHHHhcCCc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGPELLNMY-----LGESERA-------VRQCFQRARNSQPC 76 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~~l~~~~-----~~~~~~~-------~~~~~~~~~~~~~~ 76 (541)
+...+|||.|++||||+.+|+.+.... ..+|+.+||..+.... +|..... -..+|+.+ ..+
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GG 175 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGG 175 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheec---CCC
Confidence 345679999999999999999996433 6789999998775431 1111111 11223332 337
Q ss_pred eEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCC---------CCCCCeEEEEecCCC--CCCCc--cccCCCCCCe
Q psy7673 77 VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF---------EGRGGVFLMAATNRP--DIIDP--AVMRPGRFDR 143 (541)
Q Consensus 77 il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~---------~~~~~~~vi~t~~~~--~~l~~--~l~~~~r~~~ 143 (541)
+||+|||+.+.+. .+..|+..++.. ....++.+|++|+.. +.+-. .+.+. |+.
T Consensus 176 tLfLDEI~~LP~~------------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~- 241 (403)
T COG1221 176 TLFLDEIHRLPPE------------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNI- 241 (403)
T ss_pred EEehhhhhhCCHh------------HHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcC-
Confidence 9999999999654 345777777752 122357888888732 22223 34330 343
Q ss_pred EEEecCCCHHHHHH----HHHHHHh----cCCCCCCCCCC-C-HHHHHhhhhcCCCCHHHHHHHHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKE----ILLALTK----QGKDPMMGEDV-D-FDKIAADERCEGFSGADLEQLVKEAREQAIL 207 (541)
Q Consensus 144 ~i~~~~p~~~~r~~----il~~~~~----~~~~~~~~~~~-~-~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~ 207 (541)
+.+..|+.+||.. ++++++. +.+.. ..... . ...+. .....| +.++|+++++++...+..
T Consensus 242 -~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~-~~~~~~~a~~~L~-~y~~pG-NirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 242 -LTITLPPLRERKEDILLLAEHFLKSEARRLGLP-LSVDSPEALRALL-AYDWPG-NIRELKNLVERAVAQASG 311 (403)
T ss_pred -ceecCCChhhchhhHHHHHHHHHHHHHHHcCCC-CCCCCHHHHHHHH-hCCCCC-cHHHHHHHHHHHHHHhcc
Confidence 4455565555543 3344433 33221 11111 0 11111 123345 678999999999877753
No 217
>PF13173 AAA_14: AAA domain
Probab=98.88 E-value=7e-09 Score=87.13 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=71.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSS 92 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~ 92 (541)
.+.++|+||+|||||++++.+++.+. .+++++++.+.......... +...+.+....++.+|+|||++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~----- 74 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP----- 74 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc-----
Confidence 45789999999999999999998886 88999998876432111111 2222222222256899999999872
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCccccCCCCCCeEEEecCCCHHH
Q psy7673 93 LGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI----IDPAVMRPGRFDRILFVNLPNEQD 154 (541)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~----l~~~l~~~~r~~~~i~~~~p~~~~ 154 (541)
.....+.. ..+.. .+..||.|+..... ..+.+ .||.. .+++.+.+.+|
T Consensus 75 -----~~~~~lk~---l~d~~---~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 -----DWEDALKF---LVDNG---PNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -----cHHHHHHH---HHHhc---cCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 11222222 23321 23445555443322 23333 34653 77888888766
No 218
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=1.8e-08 Score=98.64 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=92.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC--------cEEEEeCccccccccCchHHHHHHHHHHHH----hcCCceE
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGI--------NFISVKGPELLNMYLGESERAVRQCFQRAR----NSQPCVI 78 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~--------~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~il 78 (541)
..+.+..+||+||.|+|||++++.+++.+-+ .+..+...+ +. ......++.+...+. ..+..|+
T Consensus 22 ~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--~~--~i~v~~ir~~~~~~~~~p~~~~~kv~ 97 (313)
T PRK05564 22 KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--KK--SIGVDDIRNIIEEVNKKPYEGDKKVI 97 (313)
T ss_pred cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc--CC--CCCHHHHHHHHHHHhcCcccCCceEE
Confidence 4567778999999999999999999997732 222222210 01 111223444444332 2344799
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
+||++|.+. ....+.|++.+++ ++.+.++|.+|+.++.+.+.+++ |+ ..+.|..|+.++...+
T Consensus 98 iI~~ad~m~------------~~a~naLLK~LEe--pp~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~ 160 (313)
T PRK05564 98 IIYNSEKMT------------EQAQNAFLKTIEE--PPKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKF 160 (313)
T ss_pred EEechhhcC------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHH
Confidence 999998883 2346789999986 34455666666778899999998 88 4899999999999888
Q ss_pred HHHHHh
Q psy7673 159 LLALTK 164 (541)
Q Consensus 159 l~~~~~ 164 (541)
++..+.
T Consensus 161 l~~~~~ 166 (313)
T PRK05564 161 ISYKYN 166 (313)
T ss_pred HHHHhc
Confidence 876553
No 219
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=3.3e-08 Score=95.74 Aligned_cols=164 Identities=15% Similarity=0.220 Sum_probs=106.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------EEEEeCcccc-ccc--------cC------
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------FISVKGPELL-NMY--------LG------ 57 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------~~~i~~~~l~-~~~--------~~------ 57 (541)
..+.+..+||+||.|+||+++++++++.+-+. +..+.+.... ++. .+
T Consensus 22 ~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~ 101 (314)
T PRK07399 22 QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAP 101 (314)
T ss_pred hCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhcccccccc
Confidence 45667899999999999999999999887221 1222211000 000 00
Q ss_pred --chHHHHHHHHHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q psy7673 58 --ESERAVRQCFQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDII 131 (541)
Q Consensus 58 --~~~~~~~~~~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l 131 (541)
.....++.+...+.. ....|++||++|.+.. ...+.|++.+++-. +.++|.+|+.++.+
T Consensus 102 ~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------~aaNaLLK~LEEPp---~~~fILi~~~~~~L 166 (314)
T PRK07399 102 PQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------AAANALLKTLEEPG---NGTLILIAPSPESL 166 (314)
T ss_pred ccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------HHHHHHHHHHhCCC---CCeEEEEECChHhC
Confidence 001234445444432 3457999999998842 35678999998743 34677777888999
Q ss_pred CccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHH
Q psy7673 132 DPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKE 200 (541)
Q Consensus 132 ~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~ 200 (541)
.+.++| |+ ..+.|++++.++..++|+...... ..+.+...++ ....| +++...++++.
T Consensus 167 l~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~~l~--~~a~G-s~~~al~~l~~ 224 (314)
T PRK07399 167 LPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFPELL--ALAQG-SPGAAIANIEQ 224 (314)
T ss_pred cHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc-----cchhHHHHHH--HHcCC-CHHHHHHHHHH
Confidence 999998 87 589999999999999998865421 1111134444 45555 67777766654
No 220
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=1.5e-08 Score=106.00 Aligned_cols=177 Identities=14% Similarity=0.179 Sum_probs=100.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE-E---eCccccccc------------cCchHHHHHHHHHHHH---
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFIS-V---KGPELLNMY------------LGESERAVRQCFQRAR--- 71 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~-i---~~~~l~~~~------------~~~~~~~~~~~~~~~~--- 71 (541)
+..+...++|+||+|+|||++++.++++++..+++ + +|......+ +......+..++..+.
T Consensus 106 ~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~ 185 (637)
T TIGR00602 106 ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKL 185 (637)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhh
Confidence 34455669999999999999999999998765544 2 221111000 1112233444444443
Q ss_pred -------hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHH-HhcCCCCCCCeEEEEecC-CCC-------------
Q psy7673 72 -------NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLT-EMDGFEGRGGVFLMAATN-RPD------------- 129 (541)
Q Consensus 72 -------~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~vi~t~~-~~~------------- 129 (541)
.....||+|||++.++.. ....+..++. .... ...+.+|++++ .+.
T Consensus 186 ~~~g~~~~~~~~IILIDEiPn~~~r---------~~~~lq~lLr~~~~e---~~~~pLI~I~TE~~~~~~~~~~~~f~~~ 253 (637)
T TIGR00602 186 QMLGDDLMTDKKIILVEDLPNQFYR---------DTRALHEILRWKYVS---IGRCPLVFIITESLEGDNNQRRLLFPAE 253 (637)
T ss_pred cccccccCCceeEEEeecchhhchh---------hHHHHHHHHHHHhhc---CCCceEEEEecCCccccccccccccchh
Confidence 124579999999987532 1123444444 2221 22333444333 221
Q ss_pred -CCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCC-----CCHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q psy7673 130 -IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGED-----VDFDKIAADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 130 -~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
.|.+++++.-|. .+|.|.+.+..+..+.|+.++.........+. ..+..++ . .+.+|++.+++....
T Consensus 254 ~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~--~----~s~GDiRsAIn~LQf 326 (637)
T TIGR00602 254 TIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLC--Q----GCSGDIRSAINSLQF 326 (637)
T ss_pred cccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHH--H----hCCChHHHHHHHHHH
Confidence 133566642244 47999999999999999998886432111111 1233333 2 355688888887766
Q ss_pred HHH
Q psy7673 204 QAI 206 (541)
Q Consensus 204 ~a~ 206 (541)
.+.
T Consensus 327 ~~~ 329 (637)
T TIGR00602 327 SSS 329 (637)
T ss_pred HHh
Confidence 654
No 221
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=2.9e-08 Score=95.61 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=93.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------EEEEeCccccccccCchHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN-----------------------FISVKGPELLNMYLGESERAVRQCF 67 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~-----------------------~~~i~~~~l~~~~~~~~~~~~~~~~ 67 (541)
..+.+..+||+||.|+||+++++.+|+.+-+. +..+....- ++ ......++.+.
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~vdqiR~l~ 97 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GK--SITVEQIRQCN 97 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CC--cCCHHHHHHHH
Confidence 46778899999999999999999999877221 112211100 00 01123344443
Q ss_pred HHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCe
Q psy7673 68 QRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 68 ~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 143 (541)
..+. .....|++||++|.+. ....+.|++.+++ ++.+.++|.+|+.++.+.|.++| |+.
T Consensus 98 ~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq- 160 (319)
T PRK06090 98 RLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ- 160 (319)
T ss_pred HHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-
Confidence 3332 2334799999999984 3456799999995 55668999999999999999999 885
Q ss_pred EEEecCCCHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKEILLA 161 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~ 161 (541)
.+.|++|+.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 889999999988887754
No 222
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=2.1e-08 Score=97.87 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=94.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-E-EEEeCccc----------------c-ccc--cCchHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN-F-ISVKGPEL----------------L-NMY--LGESERAVRQCFQR 69 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~-~-~~i~~~~l----------------~-~~~--~~~~~~~~~~~~~~ 69 (541)
..+.+..+||+||+|+||+++++++|+.+-+. . -.-.|... + ... .......++.+...
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHH
Confidence 45778899999999999999999999987321 0 00012110 0 000 00122334444444
Q ss_pred HH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEE
Q psy7673 70 AR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRIL 145 (541)
Q Consensus 70 ~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i 145 (541)
+. .....|++||++|.+. ....+.|++.|++ ++.+.++|.+|+.++.+.+.++| |+. .+
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred HhhccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 33 2345799999999984 3456799999995 56678999999999999999999 886 68
Q ss_pred EecCCCHHHHHHHHHH
Q psy7673 146 FVNLPNEQDRKEILLA 161 (541)
Q Consensus 146 ~~~~p~~~~r~~il~~ 161 (541)
.|++|+.++..+.|..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 163 YLAPPPEQYALTWLSR 178 (334)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 9999999888887764
No 223
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.85 E-value=1.6e-08 Score=99.14 Aligned_cols=174 Identities=20% Similarity=0.206 Sum_probs=97.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc-----ccCchHHH-------HHHHHHHHHhcCCce
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM-----YLGESERA-------VRQCFQRARNSQPCV 77 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~-----~~~~~~~~-------~~~~~~~~~~~~~~i 77 (541)
..+..|||+|++||||+++|+++.... +.+|+.+||..+... .+|..... ....+ .....+.
T Consensus 27 ~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l---~~a~gGt 103 (326)
T PRK11608 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRF---ERADGGT 103 (326)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCch---hccCCCe
Confidence 356689999999999999999998665 468999999976321 11111000 00112 2234579
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC--C-------CCCeEEEEecCCC-------CCCCccccCCCCC
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--G-------RGGVFLMAATNRP-------DIIDPAVMRPGRF 141 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~-------~~~~~vi~t~~~~-------~~l~~~l~~~~r~ 141 (541)
|||||+|.|.. ..+..|+..++... . ..++.||++++.. ..+.+.|.. ||
T Consensus 104 L~l~~i~~L~~------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l 169 (326)
T PRK11608 104 LFLDELATAPM------------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RL 169 (326)
T ss_pred EEeCChhhCCH------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hc
Confidence 99999999853 34456666665421 1 1247888887743 234455554 56
Q ss_pred CeEEEecCCCHHHHHH----HHHHHHhcCCCC---CCCCCCCHHHHHh-hhh-cCCCCHHHHHHHHHHHHHHH
Q psy7673 142 DRILFVNLPNEQDRKE----ILLALTKQGKDP---MMGEDVDFDKIAA-DER-CEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~----il~~~~~~~~~~---~~~~~~~~~~l~~-~~~-~~g~~~~dl~~l~~~a~~~a 205 (541)
. .+.+..|...+|.+ ++++++...... .....++-+.+.. ... ..| +.++|+++++++...+
T Consensus 170 ~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPG-NvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 170 A-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPG-NIRELKNVVERSVYRH 240 (326)
T ss_pred C-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCc-HHHHHHHHHHHHHHhc
Confidence 3 34555666666654 444444322110 0001223222221 011 223 5678888887775543
No 224
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.85 E-value=8.5e-08 Score=89.69 Aligned_cols=93 Identities=19% Similarity=0.217 Sum_probs=84.1
Q ss_pred ccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhhhc
Q psy7673 296 WSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNLLS 375 (541)
Q Consensus 296 ~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~ 375 (541)
.++.||-...+++|+..+. ++|+++++|.+|.+-++|+.|+..+|+..+||+||+++-++++..+|++-.|+-.+++.
T Consensus 213 rtV~ggS~~yvq~laa~~~--~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~e~sp~e~qll~ 290 (447)
T COG2907 213 RTVAGGSRAYVQRLAADIR--GRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLDEPSPEERQLLG 290 (447)
T ss_pred eEcccchHHHHHHHhcccc--ceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcCCCCHHHHHHHH
Confidence 5679999999999999983 37999999999999999999998889889999999999999999999887777788999
Q ss_pred CCCCccEEEEEEeeC
Q psy7673 376 SIEHVNVAVINLAYE 390 (541)
Q Consensus 376 ~~~~~~~~~v~l~~~ 390 (541)
.+.|...-+|.....
T Consensus 291 a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 291 ALRYSANTAVLHTDA 305 (447)
T ss_pred hhhhhhceeEEeecc
Confidence 999999988887764
No 225
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.85 E-value=2e-08 Score=87.79 Aligned_cols=120 Identities=25% Similarity=0.333 Sum_probs=78.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----------------------cEEEEeCccccccccCchHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGI-----------------------NFISVKGPELLNMYLGESERAVRQCF 67 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~-----------------------~~~~i~~~~l~~~~~~~~~~~~~~~~ 67 (541)
..+.+..+||+||+|+||+++++++++.+-. +++.++...... .-....++.+.
T Consensus 15 ~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~ 91 (162)
T PF13177_consen 15 SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---SIKIDQIREII 91 (162)
T ss_dssp CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---SBSHHHHHHHH
T ss_pred cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---hhhHHHHHHHH
Confidence 4577888999999999999999999998721 233332221100 11234444554
Q ss_pred HHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCe
Q psy7673 68 QRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 68 ~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 143 (541)
..+.. ....|++|||+|.+. ....+.|++.|++ ...++++|.+|+.++.+.+.++| |+.
T Consensus 92 ~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEe--pp~~~~fiL~t~~~~~il~TI~S--Rc~- 154 (162)
T PF13177_consen 92 EFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEE--PPENTYFILITNNPSKILPTIRS--RCQ- 154 (162)
T ss_dssp HHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHS--TTTTEEEEEEES-GGGS-HHHHT--TSE-
T ss_pred HHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcC--CCCCEEEEEEECChHHChHHHHh--hce-
Confidence 44432 345799999999984 4567899999995 34568999999999999999999 884
Q ss_pred EEEecCC
Q psy7673 144 ILFVNLP 150 (541)
Q Consensus 144 ~i~~~~p 150 (541)
.+.|++.
T Consensus 155 ~i~~~~l 161 (162)
T PF13177_consen 155 VIRFRPL 161 (162)
T ss_dssp EEEE---
T ss_pred EEecCCC
Confidence 6776654
No 226
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.85 E-value=5.1e-08 Score=101.75 Aligned_cols=176 Identities=22% Similarity=0.241 Sum_probs=100.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc-----ccCchHHHH-------HHHHHHHHhcCCce
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM-----YLGESERAV-------RQCFQRARNSQPCV 77 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~-----~~~~~~~~~-------~~~~~~~~~~~~~i 77 (541)
..+..|||+|++||||+++++++.... +.+++.+||..+... .+|.....+ ...|. ....+.
T Consensus 208 ~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~---~a~gGt 284 (509)
T PRK05022 208 ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFE---LADGGT 284 (509)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchh---hcCCCE
Confidence 356689999999999999999998875 579999999876421 111110000 01122 234579
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-------CCCCccccCCCCC
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP-------DIIDPAVMRPGRF 141 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~-------~~l~~~l~~~~r~ 141 (541)
|||||++.|.. ..+..|++.++.-. ...++.+|++|+.. ..+.+.|.. |+
T Consensus 285 L~ldeI~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl 350 (509)
T PRK05022 285 LFLDEIGELPL------------ALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RL 350 (509)
T ss_pred EEecChhhCCH------------HHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cc
Confidence 99999999853 34456666665421 11357888888753 123344433 44
Q ss_pred CeEEEecCCCHHHHHH----HHHHHHhcCCCCC--CCCCCCHHHHHh-hhhcCCCCHHHHHHHHHHHHHHHH
Q psy7673 142 DRILFVNLPNEQDRKE----ILLALTKQGKDPM--MGEDVDFDKIAA-DERCEGFSGADLEQLVKEAREQAI 206 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~----il~~~~~~~~~~~--~~~~~~~~~l~~-~~~~~g~~~~dl~~l~~~a~~~a~ 206 (541)
. .+.+..|...+|.+ ++++++....... ....++-+.+.. ....---+.++|++++++|...+.
T Consensus 351 ~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 351 S-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred c-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 3 45566777666654 3344444321100 011222222221 122222267899999988877664
No 227
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=2.2e-08 Score=98.29 Aligned_cols=129 Identities=17% Similarity=0.148 Sum_probs=90.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
..+.+..+||+||+|+||+++++.+++.+-+. +..+... +. ......++.+
T Consensus 24 ~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~---~~--~i~id~ir~l 98 (329)
T PRK08058 24 KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD---GQ--SIKKDQIRYL 98 (329)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc---cc--cCCHHHHHHH
Confidence 45677889999999999999999999887321 1111110 00 0112234444
Q ss_pred HHHHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
...+. .....|++|||+|.+. ....+.|++.+++ ++.+.++|.+|+.++.+.+.++| |+
T Consensus 99 ~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc- 161 (329)
T PRK08058 99 KEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLKFLEE--PSGGTTAILLTENKHQILPTILS--RC- 161 (329)
T ss_pred HHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHHHhcC--CCCCceEEEEeCChHhCcHHHHh--hc-
Confidence 44333 2234799999999884 2356789999996 34456777788888899999998 87
Q ss_pred eEEEecCCCHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLA 161 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~ 161 (541)
..++|.+|+.++..++++.
T Consensus 162 ~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 162 QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred eeeeCCCCCHHHHHHHHHH
Confidence 4899999999988777753
No 228
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=2e-08 Score=96.75 Aligned_cols=134 Identities=24% Similarity=0.296 Sum_probs=91.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------------EEEEe--Ccccccc-ccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN---------------------FISVK--GPELLNM-YLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~---------------------~~~i~--~~~l~~~-~~~~~~~~~~~~ 66 (541)
..+.+..+||+||+|+||++++.++|+.+-+. +..+. ..+-..+ ........++.+
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 45677789999999999999999999877321 11110 0000000 000112334445
Q ss_pred HHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
...+.. .+..|++||++|.+. ....+.|++.+++ +..+.+||.+++.++.+.|.++| |+.
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq 165 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ 165 (319)
T ss_pred HHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe
Confidence 444432 233699999999984 3456799999996 34566888888989999999999 884
Q ss_pred eEEEecCCCHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLA 161 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~ 161 (541)
.+.|..|+.++..+.|..
T Consensus 166 -~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 166 -RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred -EeeCCCcCHHHHHHHHHH
Confidence 889999999888877764
No 229
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.84 E-value=4e-08 Score=100.78 Aligned_cols=197 Identities=20% Similarity=0.227 Sum_probs=110.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEeCccccc---c-----------cc--C--chHHHH-HH----HH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGI--NFISVKGPELLN---M-----------YL--G--ESERAV-RQ----CF 67 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~--~~~~i~~~~l~~---~-----------~~--~--~~~~~~-~~----~~ 67 (541)
....+++|.||||+|||++++.++..+.- .-..+.+..+.+ . +. . .+...+ .. --
T Consensus 209 ~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~p 288 (499)
T TIGR00368 209 AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLP 288 (499)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccch
Confidence 34568999999999999999999875511 011111111100 0 00 0 000000 00 00
Q ss_pred HHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCC-----C--
Q psy7673 68 QRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-----------GRGGVFLMAATNRP-----D-- 129 (541)
Q Consensus 68 ~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~vi~t~~~~-----~-- 129 (541)
........++|||||++.+. ...+..|.+.|+.-. -..++.+|+++|.- .
T Consensus 289 G~i~lA~~GvLfLDEi~e~~------------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~ 356 (499)
T TIGR00368 289 GEISLAHNGVLFLDELPEFK------------RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGK 356 (499)
T ss_pred hhhhccCCCeEecCChhhCC------------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCC
Confidence 01122334799999999873 245566666665421 12468999999852 1
Q ss_pred ----------------CCCccccCCCCCCeEEEecCCCHHH-------------HHHHHHHHHh---cCCCC---CCCCC
Q psy7673 130 ----------------IIDPAVMRPGRFDRILFVNLPNEQD-------------RKEILLALTK---QGKDP---MMGED 174 (541)
Q Consensus 130 ----------------~l~~~l~~~~r~~~~i~~~~p~~~~-------------r~~il~~~~~---~~~~~---~~~~~ 174 (541)
.+...|++ ||+..+.++.++.++ |..+.+..-. .+... .....
T Consensus 357 ~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~ 434 (499)
T TIGR00368 357 NTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNAD 434 (499)
T ss_pred cccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Confidence 47777888 999999988765432 2333322111 11000 01111
Q ss_pred CCH--------------HHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHH
Q psy7673 175 VDF--------------DKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALK 239 (541)
Q Consensus 175 ~~~--------------~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 239 (541)
+.- ..+..+....+.|.|....+++-|...|-.+..+. |+.+|+.+|++
T Consensus 435 l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~----------------i~~~hv~eA~~ 497 (499)
T TIGR00368 435 LNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKN----------------ISREHLAEAIE 497 (499)
T ss_pred CCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCC----------------CCHHHHHHHHh
Confidence 111 11111123446889999999999988887665544 99999999986
No 230
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.78 E-value=9.6e-08 Score=103.62 Aligned_cols=177 Identities=22% Similarity=0.297 Sum_probs=98.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc-----ccCchHH----HHHHHHHHHHhcCCceEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM-----YLGESER----AVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~-----~~~~~~~----~~~~~~~~~~~~~~~il~i 80 (541)
....+|||+|++|||||++|+++.... +.+++.+||..+... .++.... ..............++|||
T Consensus 397 ~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~L 476 (686)
T PRK15429 397 QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 476 (686)
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEE
Confidence 345689999999999999999998765 579999999876322 1221100 0000111112234589999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCC-------CCCccccCCCCCCeE
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRPD-------IIDPAVMRPGRFDRI 144 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~~-------~l~~~l~~~~r~~~~ 144 (541)
||++.+.. ..+..|+..++... ...++.+|++|+..- .+.+.+.. |+. .
T Consensus 477 dei~~L~~------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~ 541 (686)
T PRK15429 477 DEVGDMPL------------ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-V 541 (686)
T ss_pred echhhCCH------------HHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-e
Confidence 99999843 34456666665321 123578888887531 12222222 332 4
Q ss_pred EEecCCCHHHHHH----HHHHHHhcCCCC--CCCCCCCHHHHH-hhhh-cCCCCHHHHHHHHHHHHHHH
Q psy7673 145 LFVNLPNEQDRKE----ILLALTKQGKDP--MMGEDVDFDKIA-ADER-CEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 145 i~~~~p~~~~r~~----il~~~~~~~~~~--~~~~~~~~~~l~-~~~~-~~g~~~~dl~~l~~~a~~~a 205 (541)
+.+..|...+|.+ ++++++.+.... .....+.-+.+. +... ..| +.++|+++++++...+
T Consensus 542 ~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPG-NvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 542 FPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPG-NVRELENVIERAVLLT 609 (686)
T ss_pred eEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHhC
Confidence 6677777777765 344444332110 000112222221 1022 233 5688888888886544
No 231
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.77 E-value=1.2e-07 Score=100.06 Aligned_cols=105 Identities=20% Similarity=0.232 Sum_probs=63.1
Q ss_pred CCeEEEEecCCC--CCCCccccCCCCCC---eEEEec--CC-CHHHHHHHHHHHH---hcCCCCCCCCCCCHHHHHh---
Q psy7673 117 GGVFLMAATNRP--DIIDPAVMRPGRFD---RILFVN--LP-NEQDRKEILLALT---KQGKDPMMGEDVDFDKIAA--- 182 (541)
Q Consensus 117 ~~~~vi~t~~~~--~~l~~~l~~~~r~~---~~i~~~--~p-~~~~r~~il~~~~---~~~~~~~~~~~~~~~~l~~--- 182 (541)
.++.||+++|.. ..+++.|++ ||. ..+.|+ .| +.+.+.++.+.+. +..+.. ..++.+.+..
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l---~~~s~~Av~~Li~ 341 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRI---PHFTRDAVEEIVR 341 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCC---CcCCHHHHHHHHH
Confidence 357899999864 578999998 998 656654 23 5566655554433 332111 1223222220
Q ss_pred -hhhcC------CCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 183 -DERCE------GFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 183 -~~~~~------g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
..+.. ....++|.++++.|...|..+.. ..|+.+|+.+|++...
T Consensus 342 ~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~----------------~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 342 EAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGK----------------VYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCC----------------ceecHHHHHHHHHHHH
Confidence 01111 13469999999999665543321 3599999999998653
No 232
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.76 E-value=6.6e-08 Score=84.71 Aligned_cols=100 Identities=30% Similarity=0.444 Sum_probs=64.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc-----ccCchH-------HHHHHHHHHHHhcCCce
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM-----YLGESE-------RAVRQCFQRARNSQPCV 77 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~-----~~~~~~-------~~~~~~~~~~~~~~~~i 77 (541)
..+..|||+|++||||+.+|+++.+.. +.+|+.+||+.+..+ .+|... ..-...+..+ ..++
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~Gt 96 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA---NGGT 96 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSE
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec---cceE
Confidence 455889999999999999999998866 579999999876432 111100 0011233333 3479
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCC-----CC----CCCeEEEEecCC
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF-----EG----RGGVFLMAATNR 127 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~----~~~~~vi~t~~~ 127 (541)
|||||++.|.+ ..+..|++.++.- -. ..++.||++|+.
T Consensus 97 L~Ld~I~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 97 LFLDEIEDLPP------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp EEEETGGGS-H------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred EeecchhhhHH------------HHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 99999999953 3555777766632 11 235899999885
No 233
>PRK08181 transposase; Validated
Probab=98.76 E-value=1.4e-08 Score=95.53 Aligned_cols=73 Identities=21% Similarity=0.361 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCch-HHHHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGES-ERAVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
...+++|+||+|||||+++.++++++ +..+++++..++........ .......+.... ++.+|+|||++.+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC
Confidence 55689999999999999999999766 77889999887765432111 111223333333 457999999988743
No 234
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.76 E-value=5.9e-08 Score=102.22 Aligned_cols=176 Identities=24% Similarity=0.264 Sum_probs=95.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc-----cCchHHHHHHH----HHHHHhcCCceEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY-----LGESERAVRQC----FQRARNSQPCVIFF 80 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~-----~~~~~~~~~~~----~~~~~~~~~~il~i 80 (541)
.....|||+|++||||+++|+++.... +.+|+.+||..+.... +|.....+... .........++|||
T Consensus 217 ~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~l 296 (534)
T TIGR01817 217 RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFL 296 (534)
T ss_pred CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEE
Confidence 356689999999999999999999876 5799999998763211 11100000000 00011223579999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC--C-------CCCeEEEEecCCC-------CCCCccccCCCCCCeE
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--G-------RGGVFLMAATNRP-------DIIDPAVMRPGRFDRI 144 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~-------~~~~~vi~t~~~~-------~~l~~~l~~~~r~~~~ 144 (541)
||++.|.. ..+..|+..++.-. . ..++.+|++|+.. ..+.+.|.. |+. .
T Consensus 297 dei~~L~~------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~ 361 (534)
T TIGR01817 297 DEIGEISP------------AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-V 361 (534)
T ss_pred echhhCCH------------HHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-C
Confidence 99999853 34456676665421 0 1247888888743 123333333 443 3
Q ss_pred EEecCCCH----HHHHHHHHHHHhcCCCCC-CCCCCCHHHHH-hhhhc-CCCCHHHHHHHHHHHHHH
Q psy7673 145 LFVNLPNE----QDRKEILLALTKQGKDPM-MGEDVDFDKIA-ADERC-EGFSGADLEQLVKEAREQ 204 (541)
Q Consensus 145 i~~~~p~~----~~r~~il~~~~~~~~~~~-~~~~~~~~~l~-~~~~~-~g~~~~dl~~l~~~a~~~ 204 (541)
+.+..|.. ++...++++++....... ....++-+.+. +.... .| +.++|+++++++...
T Consensus 362 ~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPG-NvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 362 VPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPG-NVRELENCLERTATL 427 (534)
T ss_pred CeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCC-hHHHHHHHHHHHHHh
Confidence 34444444 444455566655422100 00122222221 11222 33 567888888877544
No 235
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.75 E-value=8.7e-09 Score=102.48 Aligned_cols=176 Identities=24% Similarity=0.311 Sum_probs=103.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccc-----cccCchHHHH--------HHHHHHHHhcCC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLN-----MYLGESERAV--------RQCFQRARNSQP 75 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~-----~~~~~~~~~~--------~~~~~~~~~~~~ 75 (541)
.+.+.+|||.|++||||..+|+++.+.. +.+|+.+||..+-. ..+|.....+ ...|+.| ..
T Consensus 265 A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A---~g 341 (560)
T COG3829 265 AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELA---NG 341 (560)
T ss_pred cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeec---cC
Confidence 4567789999999999999999998766 78999999986532 2233322221 1233333 23
Q ss_pred ceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCC---------CCCCCeEEEEecCCC--CCCCccccCCCCCC--
Q psy7673 76 CVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF---------EGRGGVFLMAATNRP--DIIDPAVMRPGRFD-- 142 (541)
Q Consensus 76 ~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~---------~~~~~~~vi~t~~~~--~~l~~~l~~~~r~~-- 142 (541)
+.||||||..+. ..++..|++.|++- .-...+.||++||.. +.+...-.|.+.|.
T Consensus 342 GTLFLDEIgemp------------l~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRL 409 (560)
T COG3829 342 GTLFLDEIGEMP------------LPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRL 409 (560)
T ss_pred CeEEehhhccCC------------HHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeee
Confidence 799999998873 34666788877642 112358999999953 12222222222222
Q ss_pred eEEEecCCCHHHHHHHH----HHHHhcCC--CCCCCCCCCHHHHH--hhhhcCCCCHHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEIL----LALTKQGK--DPMMGEDVDFDKIA--ADERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il----~~~~~~~~--~~~~~~~~~~~~l~--~~~~~~g~~~~dl~~l~~~a~~ 203 (541)
-++.+..|...||.+-+ .+++.++. .......+.-+.++ +.-...| +.|+|+++++++..
T Consensus 410 NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPG-NVRELeNviER~v~ 477 (560)
T COG3829 410 NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPG-NVRELENVIERAVN 477 (560)
T ss_pred ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 24667777776666533 44444321 11112222222222 1123345 56888888888765
No 236
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.75 E-value=2.9e-08 Score=97.52 Aligned_cols=176 Identities=23% Similarity=0.314 Sum_probs=102.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccc-----cccCchHHHHHHHHHHH----HhcCCceEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLN-----MYLGESERAVRQCFQRA----RNSQPCVIFF 80 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~-----~~~~~~~~~~~~~~~~~----~~~~~~il~i 80 (541)
.....|||.|++||||..+||+|.+.. +.+++.+||..+-. +.+|.-...+...+..- .....+.||+
T Consensus 244 ~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFL 323 (550)
T COG3604 244 KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFL 323 (550)
T ss_pred cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEec
Confidence 466789999999999999999998876 67999999987632 22333222222221111 1123479999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCC-----CCC----CCeEEEEecCCCCCCCccccC----CC---CCCeE
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF-----EGR----GGVFLMAATNRPDIIDPAVMR----PG---RFDRI 144 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~----~~~~vi~t~~~~~~l~~~l~~----~~---r~~~~ 144 (541)
|||..|.. .++..|++.+++- -.+ -.|.||++||+. +...++. .+ |+. +
T Consensus 324 DEIGelPL------------~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRD--L~~~V~~G~FRaDLYyRLs-V 388 (550)
T COG3604 324 DEIGELPL------------ALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRD--LEEMVRDGEFRADLYYRLS-V 388 (550)
T ss_pred hhhccCCH------------HHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchh--HHHHHHcCcchhhhhhccc-c
Confidence 99988843 3445666666542 111 248999999963 2222221 11 222 3
Q ss_pred EEecCCCHHHHHH----HHHHHHhcCCCCCCCCCCC-----HHHHHhhhhcCCCCHHHHHHHHHHHHHHH
Q psy7673 145 LFVNLPNEQDRKE----ILLALTKQGKDPMMGEDVD-----FDKIAADERCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 145 i~~~~p~~~~r~~----il~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~dl~~l~~~a~~~a 205 (541)
+.+..|...||.+ +.++++++.+...-...+. ++.+. .-...| +.|+|++++++|...|
T Consensus 389 ~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~-~y~wPG-NVRELen~veRavlla 456 (550)
T COG3604 389 FPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS-SYEWPG-NVRELENVVERAVLLA 456 (550)
T ss_pred cccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH-cCCCCC-cHHHHHHHHHHHHHHh
Confidence 5566676666654 3334444322111111222 22222 012234 6799999999998887
No 237
>KOG2680|consensus
Probab=98.75 E-value=2.6e-07 Score=84.70 Aligned_cols=132 Identities=19% Similarity=0.205 Sum_probs=85.8
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC------------CCCCCCccccCCCCC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN------------RPDIIDPAVMRPGRF 141 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~------------~~~~l~~~l~~~~r~ 141 (541)
-|+||||||+|.|. -...+.|-+.+++ .-.+ ++|.+|| .|.-+|-.|+. |+
T Consensus 288 vpGVLFIDEvHMLD------------IEcFsFlNrAlE~--d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLD------------IECFSFLNRALEN--DMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM 350 (454)
T ss_pred ccceEEEeeehhhh------------hHHHHHHHHHhhh--ccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh
Confidence 46899999998872 1122233333432 1223 4444444 34568888887 77
Q ss_pred CeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCC
Q psy7673 142 DRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGI 221 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~ 221 (541)
.+|...+++.++..+||+..|........++. ++.+. .....-+-|-...|+..|...|.+|.-+
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A--~d~Lt--~i~~~tsLRYai~Lit~a~~~~~krk~~---------- 415 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDA--LDLLT--KIGEATSLRYAIHLITAASLVCLKRKGK---------- 415 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHH--HHHHH--HhhhhhhHHHHHHHHHHHHHHHHHhcCc----------
Confidence 47888899999999999999987543222221 22233 3444556777888888888888877543
Q ss_pred CCccccccCHHHHHHHHHhcCC
Q psy7673 222 DDTEQVTIGFRHFDIALKRIKP 243 (541)
Q Consensus 222 ~~~~~~~i~~~d~~~al~~~~~ 243 (541)
.+..+|+..+...+-.
T Consensus 416 ------~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 416 ------VVEVDDIERVYRLFLD 431 (454)
T ss_pred ------eeehhHHHHHHHHHhh
Confidence 4888999999887644
No 238
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.74 E-value=1.3e-07 Score=102.09 Aligned_cols=172 Identities=20% Similarity=0.265 Sum_probs=94.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc-----ccCchHH----HHHHHHHHHHhcCCceEEEc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM-----YLGESER----AVRQCFQRARNSQPCVIFFD 81 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~-----~~~~~~~----~~~~~~~~~~~~~~~il~iD 81 (541)
....|||+|++||||+++|+++.+.. +.+|+.+||..+... .+|.... .....|. ....++||||
T Consensus 347 ~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~---~a~~GtL~ld 423 (638)
T PRK11388 347 SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFE---LAHGGTLFLE 423 (638)
T ss_pred cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCcee---ECCCCEEEEc
Confidence 45569999999999999999998876 479999999876321 1221100 0000111 2245799999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHHHHhcCCC-----C----CCCeEEEEecCCCC-------CCCccccCCCCCCeEE
Q psy7673 82 EIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-----G----RGGVFLMAATNRPD-------IIDPAVMRPGRFDRIL 145 (541)
Q Consensus 82 e~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~----~~~~~vi~t~~~~~-------~l~~~l~~~~r~~~~i 145 (541)
|++.+.. ..+..|+..++.-. . ..++.+|++|+..- .+.+.|.- |+. .+
T Consensus 424 ei~~l~~------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~ 488 (638)
T PRK11388 424 KVEYLSP------------ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AF 488 (638)
T ss_pred ChhhCCH------------HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-ee
Confidence 9999853 34556777665421 0 11477888888531 22222222 332 46
Q ss_pred EecCCCHHHHHH----HHHHHHhcCCCCC-CCCCCCHHHHHh-hhhcCCCCHHHHHHHHHHHHH
Q psy7673 146 FVNLPNEQDRKE----ILLALTKQGKDPM-MGEDVDFDKIAA-DERCEGFSGADLEQLVKEARE 203 (541)
Q Consensus 146 ~~~~p~~~~r~~----il~~~~~~~~~~~-~~~~~~~~~l~~-~~~~~g~~~~dl~~l~~~a~~ 203 (541)
.+..|...+|.+ ++++++....... ....+..+.+.. ....---+.++|+++++++..
T Consensus 489 ~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 489 EITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLAL 552 (638)
T ss_pred EEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 667777766653 4444444321000 001122222221 022212256788888777654
No 239
>KOG4254|consensus
Probab=98.73 E-value=6e-07 Score=86.97 Aligned_cols=232 Identities=16% Similarity=0.167 Sum_probs=133.8
Q ss_pred cccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc-EEEEecCceeEeeCEEEEcCChhHHH-hhhccc--Cch
Q psy7673 295 VWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG-VKVTLNNDQHIEANHVVSALPAPKLG-MLLHKQ--HPT 369 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~t~P~~~~~-~ll~~~--~~~ 369 (541)
...+.|||+.+..++++.+ +.|++|.+++.|.+|.-+++. +.|...||+++.+..||+++.++.+- +|+|+. +.+
T Consensus 256 ~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~LPee 335 (561)
T KOG4254|consen 256 WGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEALPEE 335 (561)
T ss_pred ccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccCCch
Confidence 4568999999999999999 778899999999999887644 56888999999999999998776665 888753 333
Q ss_pred hHhhhcCCCC-ccEE----EEEEeeCC-CCCCCCccEEEe---c----------------CCCCCCceEEEeeccccc--
Q psy7673 370 LGNLLSSIEH-VNVA----VINLAYEN-IPMKQNAFGFLV---P----------------PREKLPILGVVFDSCCFE-- 422 (541)
Q Consensus 370 ~~~~l~~~~~-~~~~----~v~l~~~~-~~~~~~~~g~l~---~----------------~~~~~~~~~~~~~s~~~~-- 422 (541)
. .++.+.+ .++. -.++..+. ...+...+++-+ . ..++.++.-+.++|...+
T Consensus 336 f--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~lDptl 413 (561)
T KOG4254|consen 336 F--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSLDPTL 413 (561)
T ss_pred h--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccccCCCc
Confidence 2 3333322 2222 13333322 122222223222 1 122345555666665543
Q ss_pred -CCCcEEEEEEecCccCCcccCC------CCHHHHHHHHHHHHHhHc-CCCCCCceeEe----------eeccCCCCCCC
Q psy7673 423 -QADWTILTVMMGGAWYDTYFKG------QSKEYILDIACRYVHEIL-DMPRTPHAQHV----------EILKACIPQYT 484 (541)
Q Consensus 423 -~~~~~~l~~~~~g~~~~~~~~~------~~~e~~~~~~~~~l~~~~-g~~~~~~~~~~----------~~w~~a~p~~~ 484 (541)
+++.+++..|..+.. .+|... .-+++..+.+.+.+.+++ |.....+...+ -+-++.+..-.
T Consensus 414 appg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~Gn~~~~~ 492 (561)
T KOG4254|consen 414 APPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGGNIFHGA 492 (561)
T ss_pred CCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCCcccCcc
Confidence 466778888875533 222221 224778888888888775 43333222221 11122221111
Q ss_pred CCHHHHH--HHHHHH--HhhCCCCEEEEcCCC-CCCChHHHHHHHHHHHHHH
Q psy7673 485 LGHAARV--KDIQGY--IDTHQLPLYLTGSSY-DGVGVNDVIALSKKAVESI 531 (541)
Q Consensus 485 ~g~~~~~--~~~~~~--l~~~~~~l~laG~~~-~g~~v~~ai~sg~~aa~~i 531 (541)
.++...+ ..+..+ ..++.++||+||+.. .|+||.++- |..+|...
T Consensus 493 ~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgGV~a~a--G~~~A~~a 542 (561)
T KOG4254|consen 493 MGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGGGVMAAA--GRLAAHSA 542 (561)
T ss_pred cccccccccCCccccccCCCCCCceEEecCCCCCCCCccccc--hhHHHHHH
Confidence 1211111 011111 135677999999988 577776654 66666544
No 240
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.73 E-value=1.5e-07 Score=95.99 Aligned_cols=196 Identities=21% Similarity=0.225 Sum_probs=111.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeCccccc--------------cc--cCc--hHH-HHHH----
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG----INFISVKGPELLN--------------MY--LGE--SER-AVRQ---- 65 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~----~~~~~i~~~~l~~--------------~~--~~~--~~~-~~~~---- 65 (541)
....+++|+||+|+|||++++.++..+. -..+++ ..+.+ .+ ... +.. .+..
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~--~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~ 285 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALES--AAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIP 285 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEec--chhhhhhccccccCCcCCCCccCCCccchHHHHhCCCcee
Confidence 3567899999999999999999997662 112221 11110 00 000 000 0000
Q ss_pred HHHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCC-----
Q psy7673 66 CFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-----------GRGGVFLMAATNRPD----- 129 (541)
Q Consensus 66 ~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~vi~t~~~~~----- 129 (541)
--........++|||||++.+. ...+..|.+.+++-. -..++.+|+++|...
T Consensus 286 ~pG~l~~A~gGvLfLDEi~e~~------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~ 353 (506)
T PRK09862 286 GPGEISLAHNGVLFLDELPEFE------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQ 353 (506)
T ss_pred hhhHhhhccCCEEecCCchhCC------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecC
Confidence 0011223344799999998763 345667777665421 134689999999642
Q ss_pred ----------------CCCccccCCCCCCeEEEecCCCHHH----------HHHHHHHHH-------hc---CCCCCCCC
Q psy7673 130 ----------------IIDPAVMRPGRFDRILFVNLPNEQD----------RKEILLALT-------KQ---GKDPMMGE 173 (541)
Q Consensus 130 ----------------~l~~~l~~~~r~~~~i~~~~p~~~~----------r~~il~~~~-------~~---~~~~~~~~ 173 (541)
.++..+++ ||+..+.++.|+.++ ..++.+... .. .+......
T Consensus 354 ~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~ 431 (506)
T PRK09862 354 GNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSP 431 (506)
T ss_pred CCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHH
Confidence 36678888 999999999875321 111211110 00 01000000
Q ss_pred CC------C---HHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHh
Q psy7673 174 DV------D---FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKR 240 (541)
Q Consensus 174 ~~------~---~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 240 (541)
.+ + ...+.......+.|.|....+++-|...|-.+.++. |+.+|+.+|++-
T Consensus 432 ~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~----------------V~~~hv~eAl~y 491 (506)
T PRK09862 432 EIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDI----------------ITRQHLQEAVSY 491 (506)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCC----------------CCHHHHHHHHHh
Confidence 00 0 000011123457889999999999999997776554 999999999984
No 241
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=7.6e-08 Score=93.65 Aligned_cols=133 Identities=20% Similarity=0.248 Sum_probs=90.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------------------------cEEEEeCccc---cccc-cCchHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGI-------------------------NFISVKGPEL---LNMY-LGESERA 62 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~-------------------------~~~~i~~~~l---~~~~-~~~~~~~ 62 (541)
.+.+.++||+||+|+|||++++.+|+.+.+ ++++++...- .++. .......
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 367778999999999999999999998732 1222322100 0000 0012334
Q ss_pred HHHHHHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCC
Q psy7673 63 VRQCFQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRP 138 (541)
Q Consensus 63 ~~~~~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~ 138 (541)
++.+.+.+.. ....|++||+++.+.. ...+.+++.+++.. .+..+|.+|+.++.+.+.+++
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S- 162 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS- 162 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH-
Confidence 5555555542 3347999999999843 34567888888653 346677788888899999988
Q ss_pred CCCCeEEEecCCCHHHHHHHHHH
Q psy7673 139 GRFDRILFVNLPNEQDRKEILLA 161 (541)
Q Consensus 139 ~r~~~~i~~~~p~~~~r~~il~~ 161 (541)
|+ ..+.|++|+.++..+.|..
T Consensus 163 -Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 -RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred -Hh-hhhcCCCCCHHHHHHHHHh
Confidence 77 4788999999988887754
No 242
>KOG0990|consensus
Probab=98.72 E-value=6.3e-08 Score=89.78 Aligned_cols=131 Identities=19% Similarity=0.259 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCc------EEEEeCccccccccCchHHHHHHHHHHHHh-------cCCceEEEcC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGIN------FISVKGPELLNMYLGESERAVRQCFQRARN-------SQPCVIFFDE 82 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~------~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~il~iDe 82 (541)
.++|+|||||+|||+.+.+.|..+..+ +.+++.++-.+. .....-...|..++. ..+.++++||
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDE 139 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDE 139 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecc
Confidence 389999999999999999999988542 223333322111 112222333444432 2567999999
Q ss_pred CccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHH
Q psy7673 83 IDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLAL 162 (541)
Q Consensus 83 ~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~ 162 (541)
+|.+.. ..+++|-+.++.+.. ++.|+..+|.+..+.+++++ ||. .+.|.+.+..+....+.+.
T Consensus 140 ADaMT~------------~AQnALRRviek~t~--n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi 202 (360)
T KOG0990|consen 140 ADAMTR------------DAQNALRRVIEKYTA--NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHI 202 (360)
T ss_pred hhHhhH------------HHHHHHHHHHHHhcc--ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHH
Confidence 998853 344566666665543 45777888999999999998 885 6778888989999999999
Q ss_pred HhcC
Q psy7673 163 TKQG 166 (541)
Q Consensus 163 ~~~~ 166 (541)
++..
T Consensus 203 ~e~e 206 (360)
T KOG0990|consen 203 RESE 206 (360)
T ss_pred Hhcc
Confidence 8864
No 243
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.70 E-value=4.2e-07 Score=93.52 Aligned_cols=179 Identities=17% Similarity=0.270 Sum_probs=103.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeC-cccc------ccccCc---------hHHHHHHH-HHHHH--
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKG-PELL------NMYLGE---------SERAVRQC-FQRAR-- 71 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~-~~l~------~~~~~~---------~~~~~~~~-~~~~~-- 71 (541)
+....+-+||+||+|||||++++.+|++++..+.+-.. ..+. .++.+. ....+... +...+
T Consensus 41 ~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~ 120 (519)
T PF03215_consen 41 GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYS 120 (519)
T ss_pred cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccc
Confidence 44556678899999999999999999999988887532 2210 011100 00111111 11111
Q ss_pred ---------hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCC-CeEEEEecC-C------C------
Q psy7673 72 ---------NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRG-GVFLMAATN-R------P------ 128 (541)
Q Consensus 72 ---------~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vi~t~~-~------~------ 128 (541)
...+.||+|+|+-.++.. ........|.+.+.. ... +++||.|-. . .
T Consensus 121 ~l~~~g~~~~~~~kvILVEDlPN~~~~--------~~~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t 190 (519)
T PF03215_consen 121 SLSMSGSNSSSNKKVILVEDLPNVFHR--------DTSRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFT 190 (519)
T ss_pred cccccCCCcCCCceEEEeeccccccch--------hHHHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchh
Confidence 124579999999876533 113333444444442 233 666666611 1 1
Q ss_pred --CCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCC-----CCCCCCCCC-HHHHHhhhhcCCCCHHHHHHHHHH
Q psy7673 129 --DIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGK-----DPMMGEDVD-FDKIAADERCEGFSGADLEQLVKE 200 (541)
Q Consensus 129 --~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~-----~~~~~~~~~-~~~l~~~~~~~g~~~~dl~~l~~~ 200 (541)
..+++.++...++ ..|.|.+-...-....|+.++.... ......... ++.++ .. +.+||+.+++.
T Consensus 191 ~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~--~~----s~GDIRsAIn~ 263 (519)
T PF03215_consen 191 AERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIA--ES----SNGDIRSAINN 263 (519)
T ss_pred hhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHH--Hh----cCchHHHHHHH
Confidence 1355666553233 5799999999999888888887651 111111111 44554 22 44699999998
Q ss_pred HHHHHH
Q psy7673 201 AREQAI 206 (541)
Q Consensus 201 a~~~a~ 206 (541)
....+.
T Consensus 264 LQf~~~ 269 (519)
T PF03215_consen 264 LQFWCL 269 (519)
T ss_pred HHHHhc
Confidence 877775
No 244
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.68 E-value=2.3e-07 Score=96.81 Aligned_cols=171 Identities=20% Similarity=0.294 Sum_probs=95.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc-----ccCchH-------HHHHHHHHHHHhcCCceE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM-----YLGESE-------RAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~-----~~~~~~-------~~~~~~~~~~~~~~~~il 78 (541)
....|||+|++||||+++|+++.... ..+|+.+||..+... .+|... ......|+. ...+.|
T Consensus 226 ~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~---a~~GtL 302 (520)
T PRK10820 226 LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQ---ANGGSV 302 (520)
T ss_pred CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhh---cCCCEE
Confidence 45569999999999999999987655 468999999876431 111110 000112322 234799
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-C------CCCccccCCCCCC
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP-D------IIDPAVMRPGRFD 142 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~-~------~l~~~l~~~~r~~ 142 (541)
||||++.+.+. .+..|+..+++-. ...++.||++|+.+ . .+.+.|.. |+.
T Consensus 303 ~LdeI~~L~~~------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~ 368 (520)
T PRK10820 303 LLDEIGEMSPR------------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN 368 (520)
T ss_pred EEeChhhCCHH------------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC
Confidence 99999998533 4456666665421 11346788887743 1 23344544 554
Q ss_pred eEEEecCCCHHHHHH----HHHHHHhc----CCCCCCCCCCCHHHHHh-hhh-cCCCCHHHHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKE----ILLALTKQ----GKDPMMGEDVDFDKIAA-DER-CEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~----il~~~~~~----~~~~~~~~~~~~~~l~~-~~~-~~g~~~~dl~~l~~~a~~~a 205 (541)
.+.+..|...+|.+ ++++++.. .+.. ...+..+.+.. ... ..| +.++|++++.+|...+
T Consensus 369 -~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~--~~~ls~~a~~~L~~y~WPG-NvreL~nvl~~a~~~~ 437 (520)
T PRK10820 369 -VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP--RPKLAADLNTVLTRYGWPG-NVRQLKNAIYRALTQL 437 (520)
T ss_pred -eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC
Confidence 46666776666653 33333332 2211 11233222221 022 222 5577778777775543
No 245
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.67 E-value=8.6e-08 Score=99.01 Aligned_cols=171 Identities=22% Similarity=0.279 Sum_probs=96.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH-----------hCCcEEEEeCcccccc-----ccCchHHHH--------HHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANE-----------AGINFISVKGPELLNM-----YLGESERAV--------RQCFQR 69 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~-----------~~~~~~~i~~~~l~~~-----~~~~~~~~~--------~~~~~~ 69 (541)
....|||+|++||||+++|+++.+. .+.+|+.+||..+... .+|.....+ ...|+.
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~ 320 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 320 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhc
Confidence 4568999999999999999999887 3679999999876432 122111110 112322
Q ss_pred HHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-C-CCC-----c
Q psy7673 70 ARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP-D-IID-----P 133 (541)
Q Consensus 70 ~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~-~-~l~-----~ 133 (541)
...+.|||||++.|.. ..+..|+..+++-. -..++.+|++|+.. . .+. +
T Consensus 321 ---A~gGTLfLdeI~~Lp~------------~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~ 385 (538)
T PRK15424 321 ---AHGGTLFLDEIGEMPL------------PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRR 385 (538)
T ss_pred ---cCCCEEEEcChHhCCH------------HHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchH
Confidence 2347999999999853 34557777765421 12246888888743 1 122 2
Q ss_pred cccCCCCCCeEEEecCCCHHHHHH----HHHHHHhcCCCCCCCCCCCHHHH--------Hhhhh-cCCCCHHHHHHHHHH
Q psy7673 134 AVMRPGRFDRILFVNLPNEQDRKE----ILLALTKQGKDPMMGEDVDFDKI--------AADER-CEGFSGADLEQLVKE 200 (541)
Q Consensus 134 ~l~~~~r~~~~i~~~~p~~~~r~~----il~~~~~~~~~~~~~~~~~~~~l--------~~~~~-~~g~~~~dl~~l~~~ 200 (541)
.|.. |+. .+.+..|...+|.+ ++++++...... ....+.-+.+ .+... ..| +.++|++++++
T Consensus 386 dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~-~~~~~~~~a~~~~~~a~~~L~~y~WPG-NvREL~nvier 460 (538)
T PRK15424 386 DLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQSLAA-LSAPFSAALRQGLQQCETLLLHYDWPG-NVRELRNLMER 460 (538)
T ss_pred HHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHHHHHH-cCCCCCHHHHHhhHHHHHHHHhCCCCc-hHHHHHHHHHH
Confidence 2222 332 45666777666654 445555431100 0001111111 00011 233 56888898888
Q ss_pred HHHH
Q psy7673 201 AREQ 204 (541)
Q Consensus 201 a~~~ 204 (541)
+...
T Consensus 461 ~~i~ 464 (538)
T PRK15424 461 LALF 464 (538)
T ss_pred HHHh
Confidence 8663
No 246
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.67 E-value=1.1e-07 Score=98.37 Aligned_cols=174 Identities=21% Similarity=0.278 Sum_probs=96.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc-----ccCchHHH--------HHHHHHHHHhcCCce
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM-----YLGESERA--------VRQCFQRARNSQPCV 77 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~-----~~~~~~~~--------~~~~~~~~~~~~~~i 77 (541)
....|||+|++||||+++|+++.+.. +.+|+.+||..+... .+|..... -...|+. ...+.
T Consensus 234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~---A~gGT 310 (526)
T TIGR02329 234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEA---AHRGT 310 (526)
T ss_pred CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhh---cCCce
Confidence 45689999999999999999998765 679999999876421 12211100 1112222 23479
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC--CCCCccccCCC---CCCe
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP--DIIDPAVMRPG---RFDR 143 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~--~~l~~~l~~~~---r~~~ 143 (541)
|||||++.|.. ..+..|+..+++-. ...++.+|++|+.. +.+.....+.. |+.
T Consensus 311 LfLdeI~~Lp~------------~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~- 377 (526)
T TIGR02329 311 LFLDEIGEMPL------------PLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS- 377 (526)
T ss_pred EEecChHhCCH------------HHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-
Confidence 99999999853 34557777665421 11235788888743 12222222111 332
Q ss_pred EEEecCCCHHHHHH----HHHHHHhcCCCCCCCCCCCHHHHH--------hhhh-cCCCCHHHHHHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKE----ILLALTKQGKDPMMGEDVDFDKIA--------ADER-CEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 144 ~i~~~~p~~~~r~~----il~~~~~~~~~~~~~~~~~~~~l~--------~~~~-~~g~~~~dl~~l~~~a~~~a 205 (541)
.+.+..|...+|.+ ++++++....... .-.+..+.+. +... ..| +.++|+++++++...+
T Consensus 378 ~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~-~~~~~~~a~~~~~~~~~~L~~y~WPG-NvrEL~nvier~~i~~ 450 (526)
T TIGR02329 378 ILRIALPPLRERPGDILPLAAEYLVQAAAAL-RLPDSEAAAQVLAGVADPLQRYPWPG-NVRELRNLVERLALEL 450 (526)
T ss_pred CcEEeCCCchhchhHHHHHHHHHHHHHHHHc-CCCCCHHHHHHhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHhc
Confidence 35566666666654 4455555432111 0112211111 1022 223 5688888888876543
No 247
>PRK12377 putative replication protein; Provisional
Probab=98.66 E-value=1e-07 Score=88.73 Aligned_cols=70 Identities=24% Similarity=0.403 Sum_probs=49.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchH--HHHHHHHHHHHhcCCceEEEcCCccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESE--RAVRQCFQRARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~il~iDe~d~l 86 (541)
..+++|+||||||||+++.++++.+ +..+++++..++......... .....++... ....+|+|||++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 4689999999999999999999988 677888888777653211100 0112233333 34579999999765
No 248
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.65 E-value=3.9e-08 Score=95.46 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCc---hHHHHHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGE---SERAVRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
..+++|+||+|||||+|+.++|+++ +..+++++..+++...... ........+.... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC
Confidence 3789999999999999999999987 7889999988876543111 0011111133333 34799999997763
No 249
>PRK06526 transposase; Provisional
Probab=98.64 E-value=3.4e-08 Score=92.61 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCc-hHHHHHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGE-SERAVRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
.+.+++|+||||||||+++.+++.++ +..+.++++.++....... ....+...+... ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 45689999999999999999998876 6777777776665432111 001112222222 345899999999874
No 250
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.62 E-value=1.3e-07 Score=79.93 Aligned_cols=74 Identities=24% Similarity=0.331 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEeCcccccc--------------cc--CchHHHHHHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA--------GINFISVKGPELLNM--------------YL--GESERAVRQCFQR 69 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~--------~~~~~~i~~~~l~~~--------------~~--~~~~~~~~~~~~~ 69 (541)
....++|+|++|+|||++++.+++.+ ..+++.+++....+. .. .........+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45678999999999999999999988 788888887644310 01 1233334444455
Q ss_pred HHhcCCceEEEcCCcccc
Q psy7673 70 ARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 70 ~~~~~~~il~iDe~d~l~ 87 (541)
.......+|+|||+|.+.
T Consensus 83 l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHCTEEEEEEETTHHHH
T ss_pred HHhcCCeEEEEeChHhcC
Confidence 555544699999999984
No 251
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.61 E-value=1.2e-07 Score=98.48 Aligned_cols=73 Identities=26% Similarity=0.352 Sum_probs=60.7
Q ss_pred ccccccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCC-cEEEEecCceeEeeCEEEEcCChhHHHhhhc
Q psy7673 292 KWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEK-GVKVTLNNDQHIEANHVVSALPAPKLGMLLH 364 (541)
Q Consensus 292 ~~~~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~-~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~ 364 (541)
...++..+|||+.|+++|++.+ ..|++|+++++|++|..+++ ++++++.+|+.+.+|.||++.-+.....+.+
T Consensus 213 ~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~ 287 (487)
T COG1233 213 SGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLARLLG 287 (487)
T ss_pred cCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhhhhhh
Confidence 3446888999999999999999 67899999999999998765 5888888877789999999998854445543
No 252
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.61 E-value=3.7e-08 Score=87.36 Aligned_cols=72 Identities=29% Similarity=0.515 Sum_probs=48.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCc-hHHHHHHHHHHHHhcCCceEEEcCCccc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGE-SERAVRQCFQRARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe~d~l 86 (541)
..+.+++|+||+|+|||+++.++++++ +..+.+++..+++...... ........+.... ...+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 356799999999999999999999877 8899999998886653211 0111223344433 3479999999654
No 253
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.60 E-value=4.4e-07 Score=88.07 Aligned_cols=137 Identities=21% Similarity=0.340 Sum_probs=90.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCc-------------c-------------------ccccccCchHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGP-------------E-------------------LLNMYLGESERA 62 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~-------------~-------------------l~~~~~~~~~~~ 62 (541)
-.++||-|+.|+||||++|+++.-+.-..+.+.|. . +.+.-.+.++..
T Consensus 38 iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDr 117 (423)
T COG1239 38 IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDR 117 (423)
T ss_pred cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhh
Confidence 34799999999999999999999884222222431 0 001111222221
Q ss_pred ------HHHHHHH---------HHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCC-----------CCC
Q psy7673 63 ------VRQCFQR---------ARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF-----------EGR 116 (541)
Q Consensus 63 ------~~~~~~~---------~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-----------~~~ 116 (541)
+..+... +.....+||++||+..|. .++++.|++.+..- .-.
T Consensus 118 vvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~------------d~lvd~LLd~aaeG~n~vereGisi~hp 185 (423)
T COG1239 118 LVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD------------DHLVDALLDVAAEGVNDVEREGISIRHP 185 (423)
T ss_pred hccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc------------HHHHHHHHHHHHhCCceeeeCceeeccC
Confidence 1111110 011233799999999883 35677777776642 223
Q ss_pred CCeEEEEecCCC-CCCCccccCCCCCCeEEEecCC-CHHHHHHHHHHHHhc
Q psy7673 117 GGVFLMAATNRP-DIIDPAVMRPGRFDRILFVNLP-NEQDRKEILLALTKQ 165 (541)
Q Consensus 117 ~~~~vi~t~~~~-~~l~~~l~~~~r~~~~i~~~~p-~~~~r~~il~~~~~~ 165 (541)
.++++|+|.|.- ..|-+.|+. ||...+.+..| +.++|.+|.++....
T Consensus 186 a~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 186 ARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred ccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 468999999965 368899998 99999998866 779999999888764
No 254
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.59 E-value=1.6e-07 Score=97.24 Aligned_cols=177 Identities=21% Similarity=0.247 Sum_probs=96.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc-----cCchHHH----HHHHHHHHHhcCCceEEEc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY-----LGESERA----VRQCFQRARNSQPCVIFFD 81 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~il~iD 81 (541)
....++|+|++||||+++++++.... +.+++.++|..+.... +|..... .............++||||
T Consensus 161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 240 (445)
T TIGR02915 161 SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLD 240 (445)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEe
Confidence 45679999999999999999998765 5689999998763221 1100000 0000000112345799999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-------CCCCccccCCCCCCeEE
Q psy7673 82 EIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP-------DIIDPAVMRPGRFDRIL 145 (541)
Q Consensus 82 e~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~-------~~l~~~l~~~~r~~~~i 145 (541)
|++.|.. ..+..|+..++.-. ...++.+|++++.. ..+.+.|.. |+. .+
T Consensus 241 ~i~~l~~------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~ 305 (445)
T TIGR02915 241 EIGDLPL------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EI 305 (445)
T ss_pred chhhCCH------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cc
Confidence 9999853 34456666665321 11257888888753 223344433 443 35
Q ss_pred EecCCCHHHHHH----HHHHHHhcCCCCC--CCCCCCHHHHH-hhhhcCCCCHHHHHHHHHHHHHHH
Q psy7673 146 FVNLPNEQDRKE----ILLALTKQGKDPM--MGEDVDFDKIA-ADERCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 146 ~~~~p~~~~r~~----il~~~~~~~~~~~--~~~~~~~~~l~-~~~~~~g~~~~dl~~l~~~a~~~a 205 (541)
.+..|...+|.+ ++++++....... ....++-+.+. +....---+.++|++++++|...+
T Consensus 306 ~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 306 SITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred eecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 666777777665 4444444321100 01112222222 002222225688888888876543
No 255
>PRK09183 transposase/IS protein; Provisional
Probab=98.58 E-value=1.3e-07 Score=89.31 Aligned_cols=75 Identities=31% Similarity=0.406 Sum_probs=51.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCc-hHHHHHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGE-SERAVRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
.....+++|+||+|||||+++.+++... +..+.++++.++....... ....+..++... ...+.+++|||++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3456689999999999999999998764 7788888877765432111 111233334332 2356899999998763
No 256
>KOG0480|consensus
Probab=98.56 E-value=5.4e-07 Score=90.76 Aligned_cols=195 Identities=17% Similarity=0.184 Sum_probs=123.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcc----c---------cccccCchHHHHHHHHHHHHhcCCceEEEcC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPE----L---------LNMYLGESERAVRQCFQRARNSQPCVIFFDE 82 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~----l---------~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 82 (541)
-+++|.|+||+|||-++++++..+...++...... | .++|.-+.. .+.-...+|-.|||
T Consensus 379 inv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAG--------ALmLADnGICCIDE 450 (764)
T KOG0480|consen 379 INVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAG--------ALMLADNGICCIDE 450 (764)
T ss_pred ceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecC--------cEEEccCceEEech
Confidence 47999999999999999999998866554332111 1 111111100 01123447999999
Q ss_pred CccccCCCCCCCCCChhHHHHHHHHHHhcCC----C-------CCCCeEEEEecCCCC-------------CCCccccCC
Q psy7673 83 IDALCPKRSSLGDNNSSMRIVNQLLTEMDGF----E-------GRGGVFLMAATNRPD-------------IIDPAVMRP 138 (541)
Q Consensus 83 ~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~-------~~~~~~vi~t~~~~~-------------~l~~~l~~~ 138 (541)
+|++.-+. ..++.+.+++- . -+.+..|||++|+.. .+.+++.+
T Consensus 451 FDKMd~~d------------qvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS- 517 (764)
T KOG0480|consen 451 FDKMDVKD------------QVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS- 517 (764)
T ss_pred hcccChHh------------HHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh-
Confidence 99985321 23455555431 1 122357888888653 47899999
Q ss_pred CCCCeE-EEecCCCHHHHHHHHHHHHhcCCCCCCCC----CCCHHHH----Hhh--------------------------
Q psy7673 139 GRFDRI-LFVNLPNEQDRKEILLALTKQGKDPMMGE----DVDFDKI----AAD-------------------------- 183 (541)
Q Consensus 139 ~r~~~~-i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~~~~l----~~~-------------------------- 183 (541)
||+.. |-+..|++..-..|-++++..+....... ....+.+ .++
T Consensus 518 -RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~ 596 (764)
T KOG0480|consen 518 -RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRD 596 (764)
T ss_pred -hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhh
Confidence 99955 56779999888888888887654211000 0011111 000
Q ss_pred -----hhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCCCCChh
Q psy7673 184 -----ERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKPSVSKA 248 (541)
Q Consensus 184 -----~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~s~~ 248 (541)
+.+...+.|+|+.|++.+...|.....+. +|.+|+.+|.+.++.+.-..
T Consensus 597 ~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~de----------------vt~~~v~ea~eLlk~Siv~v 650 (764)
T KOG0480|consen 597 AQGNNRSSYRITVRQLESLIRLSEARARVECRDE----------------VTKEDVEEAVELLKKSIVRV 650 (764)
T ss_pred ccccCcccccccHHHHHHHHHHHHHHHhhhhhhh----------------ccHHHHHHHHHHHHhhheee
Confidence 01235678999999999888887766554 99999999999888775443
No 257
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.55 E-value=1.6e-07 Score=92.04 Aligned_cols=195 Identities=21% Similarity=0.260 Sum_probs=107.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcc-----ccccccCc---hHHHHHHHHHHHHhcCCceEEEcCCcc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPE-----LLNMYLGE---SERAVRQCFQRARNSQPCVIFFDEIDA 85 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~-----l~~~~~~~---~~~~~~~~~~~~~~~~~~il~iDe~d~ 85 (541)
...++||.|+||+|||.+++.+++.....+ +++... +....... .+..+.. ........+|++|||+|.
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~lea--Galvlad~GiccIDe~dk 132 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEA--GALVLADGGICCIDEFDK 132 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE---HHHHCTTSEEEECTTTT
T ss_pred cccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeC--CchhcccCceeeeccccc
Confidence 345899999999999999998876554443 333221 11110000 0000000 011223458999999999
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHhcCC----CC-------CCCeEEEEecCCCC-------------CCCccccCCCCC
Q psy7673 86 LCPKRSSLGDNNSSMRIVNQLLTEMDGF----EG-------RGGVFLMAATNRPD-------------IIDPAVMRPGRF 141 (541)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~-------~~~~~vi~t~~~~~-------------~l~~~l~~~~r~ 141 (541)
+-.. ....|.+.|+.- .. +.+..|+|++|+.. .+++.+++ ||
T Consensus 133 ~~~~------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RF 198 (331)
T PF00493_consen 133 MKED------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RF 198 (331)
T ss_dssp --CH------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-
T ss_pred ccch------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hc
Confidence 8432 245666666652 11 23478999999654 47789998 99
Q ss_pred CeEEEe-cCCCHHHHHHHHHHHHhcCCCC-------------CCCCCCCHHHHHhhhh----------------------
Q psy7673 142 DRILFV-NLPNEQDRKEILLALTKQGKDP-------------MMGEDVDFDKIAADER---------------------- 185 (541)
Q Consensus 142 ~~~i~~-~~p~~~~r~~il~~~~~~~~~~-------------~~~~~~~~~~l~~~~~---------------------- 185 (541)
+.++.+ ..|+.+.-..+.++.+..+... ....+.-...+++++.
T Consensus 199 DLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR 278 (331)
T PF00493_consen 199 DLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELR 278 (331)
T ss_dssp SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCC
T ss_pred CEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhc
Confidence 977664 5778888888888887765322 1112222333333220
Q ss_pred --------cCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 186 --------CEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 186 --------~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
....++|.|..|++-+...|..+.++. ++.+|+..|+.-+
T Consensus 279 ~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~----------------V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 279 KESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDE----------------VTEEDVEEAIRLF 326 (331)
T ss_dssp HCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSE----------------CSHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHhccCc----------------eeHHHHHHHHHHH
Confidence 123556777888888877777776654 8999999998755
No 258
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.55 E-value=1.5e-07 Score=87.30 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=50.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCch---HHHHHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGES---ERAVRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
.+++|+|++|||||+++.++++++ +..+++++..++........ ......++.... ..++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 589999999999999999999988 77888998887765432111 111223444433 45799999998763
No 259
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.55 E-value=1.8e-07 Score=87.75 Aligned_cols=170 Identities=20% Similarity=0.260 Sum_probs=87.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEeCccccc----------------------c------------
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGI---NFISVKGPELLN----------------------M------------ 54 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~---~~~~i~~~~l~~----------------------~------------ 54 (541)
..+...++|+||+|+|||++++.+.+.+.- ..+++++..... .
T Consensus 17 ~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (234)
T PF01637_consen 17 SGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISK 96 (234)
T ss_dssp H--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEEC
T ss_pred hhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence 345788999999999999999999998832 222332211000 0
Q ss_pred -ccCchHHHHHHHHHHHHhcC-CceEEEcCCcccc-CCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--
Q psy7673 55 -YLGESERAVRQCFQRARNSQ-PCVIFFDEIDALC-PKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-- 129 (541)
Q Consensus 55 -~~~~~~~~~~~~~~~~~~~~-~~il~iDe~d~l~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-- 129 (541)
........+..++..+.... ..+|+|||++.+. ... ........|...++......++.+|.++....
T Consensus 97 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~ 169 (234)
T PF01637_consen 97 DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLM 169 (234)
T ss_dssp TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHH
T ss_pred cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-------chHHHHHHHHHHHhhccccCCceEEEECCchHHH
Confidence 00112344555566555433 3789999999997 221 22455566666666544455554444443321
Q ss_pred ----CCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHH
Q psy7673 130 ----IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLE 195 (541)
Q Consensus 130 ----~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~ 195 (541)
.-...+.. |+.. +.+++.+.++..++++..+... .....++.+++.+. ..+.| .|+-|.
T Consensus 170 ~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~--~~~gG-~P~~l~ 232 (234)
T PF01637_consen 170 EEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIY--SLTGG-NPRYLQ 232 (234)
T ss_dssp HHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHH--HHHTT--HHHHH
T ss_pred HHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHH--HHhCC-CHHHHh
Confidence 11223333 7766 9999999999999999988764 11112333445555 56666 355443
No 260
>PF05729 NACHT: NACHT domain
Probab=98.54 E-value=6.1e-07 Score=79.12 Aligned_cols=141 Identities=17% Similarity=0.215 Sum_probs=76.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh------C---CcEEEEeCcccccccc------------CchHHHHHHHH-HHHHhc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA------G---INFISVKGPELLNMYL------------GESERAVRQCF-QRARNS 73 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~------~---~~~~~i~~~~l~~~~~------------~~~~~~~~~~~-~~~~~~ 73 (541)
+-++|+|++|+|||++++.++..+ . ..++.+++.+...... ..........+ ......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 357899999999999999999877 1 1233444443322110 00011111111 122234
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCccccCCCCCCeEEEecCCC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI--IDPAVMRPGRFDRILFVNLPN 151 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~--l~~~l~~~~r~~~~i~~~~p~ 151 (541)
...+|+||.+|.+...... .........+...+.. ....++.++.|++.... +...+.. ...+.+...+
T Consensus 81 ~~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~-~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQ-ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred CceEEEEechHhcccchhh----hHHHHHHHHHHHHhhh-ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCC
Confidence 5578889999999754221 1111222233333332 11233445555543222 3233322 1578899999
Q ss_pred HHHHHHHHHHHHhc
Q psy7673 152 EQDRKEILLALTKQ 165 (541)
Q Consensus 152 ~~~r~~il~~~~~~ 165 (541)
.+++.++++..++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988763
No 261
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.54 E-value=2e-07 Score=87.52 Aligned_cols=71 Identities=28% Similarity=0.498 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHH-HH-HHHHHHHHhcCCceEEEcCCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESER-AV-RQCFQRARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~il~iDe~d~l 86 (541)
.+.+++|+||||+|||+|+-++++++ |.++..+...+++.+....... .. ..+.... ....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 56799999999999999999999988 7899999998887653221111 11 1111112 23479999999876
No 262
>PRK06921 hypothetical protein; Provisional
Probab=98.53 E-value=2e-07 Score=88.21 Aligned_cols=69 Identities=26% Similarity=0.337 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCcc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDA 85 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~ 85 (541)
...+++|+|++|+|||+|+.++++++ +..+++++..+++....... ......+... ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 46789999999999999999999976 56788888766544321111 1111222222 2457999999954
No 263
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.52 E-value=5.1e-07 Score=94.31 Aligned_cols=199 Identities=19% Similarity=0.207 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe-CccccccccCchHHH-HHHHHHH---HHhcCCceEEEcCCccccCCC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVK-GPELLNMYLGESERA-VRQCFQR---ARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~-~~~l~~~~~~~~~~~-~~~~~~~---~~~~~~~il~iDe~d~l~~~~ 90 (541)
-++||.|.||||||.+.+.+++.....++.-- ++.-.+....-.... .....-+ +....++|..|||+|.+...
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~- 398 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE- 398 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH-
Confidence 57999999999999999999988865544321 111111000000000 0000001 11245689999999987422
Q ss_pred CCCCCCChhHHHHHHHHHHhcCC----CC-------CCCeEEEEecCCCC-------------CCCccccCCCCCCeEEE
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGF----EG-------RGGVFLMAATNRPD-------------IIDPAVMRPGRFDRILF 146 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~----~~-------~~~~~vi~t~~~~~-------------~l~~~l~~~~r~~~~i~ 146 (541)
....+.+.+++. .+ +.+..|+|++|+.. .+++.|++ ||+.++-
T Consensus 399 -----------dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifv 465 (682)
T COG1241 399 -----------DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFV 465 (682)
T ss_pred -----------HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEE
Confidence 223455555431 11 22357888888653 47889999 9997755
Q ss_pred ec-CCCHHHHHHHHHHHHhcCCCCCCCCC---------------CCHHHHHhhh-----------------------h--
Q psy7673 147 VN-LPNEQDRKEILLALTKQGKDPMMGED---------------VDFDKIAADE-----------------------R-- 185 (541)
Q Consensus 147 ~~-~p~~~~r~~il~~~~~~~~~~~~~~~---------------~~~~~l~~~~-----------------------~-- 185 (541)
+. .|+.+.-..+.++.+..+........ .-...+++++ .
T Consensus 466 l~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~ 545 (682)
T COG1241 466 LKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKS 545 (682)
T ss_pred ecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhcc
Confidence 44 78887777777777665421110000 0001111111 1
Q ss_pred -------cCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCCC
Q psy7673 186 -------CEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKPS 244 (541)
Q Consensus 186 -------~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 244 (541)
+.-.++|+|.++++.+...|..|.++. ++.+|+++|++.++.+
T Consensus 546 ~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~----------------V~~eD~~eAi~lv~~~ 595 (682)
T COG1241 546 ALVEEKRTIPITARQLESIIRLAEAHAKMRLSDV----------------VEEEDVDEAIRLVDFS 595 (682)
T ss_pred ccccccCcccccHHHHHHHHHHHHHHHhhhccCC----------------CCHHHHHHHHHHHHHH
Confidence 122578999999999999998887755 9999999999877544
No 264
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.52 E-value=2.3e-07 Score=89.45 Aligned_cols=71 Identities=27% Similarity=0.420 Sum_probs=50.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchH-HHHHHHHHHHHhcCCceEEEcCCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESE-RAVRQCFQRARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~il~iDe~d~l 86 (541)
...+++|+||+|||||+|+.++|+++ +..+..+...+++........ ..+...+.... ...+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 56799999999999999999999988 788888888777554321110 11223333333 3479999999764
No 265
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.52 E-value=1.4e-06 Score=80.38 Aligned_cols=132 Identities=19% Similarity=0.223 Sum_probs=77.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSS 92 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~ 92 (541)
....+-.++||+|||||.+++.+|+.+|..++.+||++-.+ ...+.+++.-+.... +-+++||++.+....-
T Consensus 30 ~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~G-aW~cfdefnrl~~~vL- 101 (231)
T PF12774_consen 30 SLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQSG-AWLCFDEFNRLSEEVL- 101 (231)
T ss_dssp CTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCSSHHHH-
T ss_pred ccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhcC-chhhhhhhhhhhHHHH-
Confidence 44567789999999999999999999999999999987543 356777776666543 7899999999842210
Q ss_pred CCCCChhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCC----CCCCCccccCCCCCCeEEEecCCCHHHHHH
Q psy7673 93 LGDNNSSMRIVNQLLTEMDGFE-----------GRGGVFLMAATNR----PDIIDPAVMRPGRFDRILFVNLPNEQDRKE 157 (541)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~vi~t~~~----~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 157 (541)
+...+.+..+...+..-. -+.+.-++.|.|. ...+|+.++. .| +.+.+..||.+...+
T Consensus 102 ----S~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~e 174 (231)
T PF12774_consen 102 ----SVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAE 174 (231)
T ss_dssp ----HHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHH
T ss_pred ----HHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHH
Confidence 011122222222222210 1123455556663 2468999986 44 789999999876555
Q ss_pred HH
Q psy7673 158 IL 159 (541)
Q Consensus 158 il 159 (541)
++
T Consensus 175 i~ 176 (231)
T PF12774_consen 175 IL 176 (231)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 266
>KOG0478|consensus
Probab=98.48 E-value=6.9e-07 Score=90.73 Aligned_cols=135 Identities=20% Similarity=0.288 Sum_probs=76.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCc-ccccc--ccCchHHHHHHHHHH---HHhcCCceEEEcCCccccCC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGP-ELLNM--YLGESERAVRQCFQR---ARNSQPCVIFFDEIDALCPK 89 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~-~l~~~--~~~~~~~~~~~~~~~---~~~~~~~il~iDe~d~l~~~ 89 (541)
-+|||+|.||||||.+++.+++.+..-.+.-... .-.+. ++.. ....+++..+ +.....++-.|||||++...
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtr-d~dtkqlVLesGALVLSD~GiCCIDEFDKM~dS 541 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTK-DPDTRQLVLESGALVLSDNGICCIDEFDKMSDS 541 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEe-cCccceeeeecCcEEEcCCceEEchhhhhhhHH
Confidence 5799999999999999999998774332221110 00000 0000 0000111111 11234579999999998432
Q ss_pred CCCCCCCChhHHHHHHHHHHhcC---------C--CCCCCeEEEEecCCCC-------------CCCccccCCCCCCeE-
Q psy7673 90 RSSLGDNNSSMRIVNQLLTEMDG---------F--EGRGGVFLMAATNRPD-------------IIDPAVMRPGRFDRI- 144 (541)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~---------~--~~~~~~~vi~t~~~~~-------------~l~~~l~~~~r~~~~- 144 (541)
. .+.|.+.+++ + .=+.+..|+|++|+.. .|++.|++ ||+.+
T Consensus 542 t------------rSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIy 607 (804)
T KOG0478|consen 542 T------------RSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIF 607 (804)
T ss_pred H------------HHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEE
Confidence 2 1233333332 1 1123458999999432 47899999 99976
Q ss_pred EEecCCCHHHHHHHHHHHHhc
Q psy7673 145 LFVNLPNEQDRKEILLALTKQ 165 (541)
Q Consensus 145 i~~~~p~~~~r~~il~~~~~~ 165 (541)
+-+..|++..-+.+-.++..-
T Consensus 608 lllD~~DE~~Dr~La~HivsL 628 (804)
T KOG0478|consen 608 LLLDKPDERSDRRLADHIVAL 628 (804)
T ss_pred EEecCcchhHHHHHHHHHHHh
Confidence 456678877556666665543
No 267
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.47 E-value=1.7e-07 Score=79.78 Aligned_cols=87 Identities=32% Similarity=0.523 Sum_probs=58.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG---INFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPK 89 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~ 89 (541)
.....|+|+|++||||+++|+++....+ .+++.++|..+. ...++.+ ..+.|+|+|+|.+..
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~- 83 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSP- 83 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-H-
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCH-
Confidence 4566799999999999999999998764 356666776542 2233332 558999999999843
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy7673 90 RSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN 126 (541)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~ 126 (541)
..+..|+..++... ..++.+|+++.
T Consensus 84 -----------~~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 84 -----------EAQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp -----------HHHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred -----------HHHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 34456666665432 34456666665
No 268
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.47 E-value=3e-06 Score=88.57 Aligned_cols=194 Identities=15% Similarity=0.059 Sum_probs=120.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEeCccccccccCch--HHHHHH---HHH--HHHhcCCceEEEcCCccc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGI--NFISVKGPELLNMYLGES--ERAVRQ---CFQ--RARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~--~~~~i~~~~l~~~~~~~~--~~~~~~---~~~--~~~~~~~~il~iDe~d~l 86 (541)
.||+|.|++|++||++++.++..+.. +|+.+..+--....+|.. +..+.. .+. .+.....+||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 47999999999999999999998854 666655432212222221 111100 000 011223379999999887
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhcCC-----------CCCCCeEEEEecCCC---CCCCccccCCCCCCeEEEecCCCH
Q psy7673 87 CPKRSSLGDNNSSMRIVNQLLTEMDGF-----------EGRGGVFLMAATNRP---DIIDPAVMRPGRFDRILFVNLPNE 152 (541)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-----------~~~~~~~vi~t~~~~---~~l~~~l~~~~r~~~~i~~~~p~~ 152 (541)
. ..+++.|++.++.- .-..++.+|++.|.. +.+++.++. ||...+.+..|+.
T Consensus 106 ~------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~ 171 (584)
T PRK13406 106 E------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLAL 171 (584)
T ss_pred C------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCCh
Confidence 4 35677888888752 112468888874432 348899998 9999999998876
Q ss_pred HHHH-------HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCC-CHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCc
Q psy7673 153 QDRK-------EILLALTKQGKDPMMGEDVDFDKIAADERCEGF-SGADLEQLVKEAREQAILEIVNSVENDDQAGIDDT 224 (541)
Q Consensus 153 ~~r~-------~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~ 224 (541)
.+.. +|.+..-.-. ...+ ++..+..++......|. +.|-...+++-|...|..+..+.
T Consensus 172 ~~~~~~~~~~~~I~~AR~rl~-~v~v-~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~------------ 237 (584)
T PRK13406 172 RDAREIPIDADDIAAARARLP-AVGP-PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTA------------ 237 (584)
T ss_pred HHhcccCCCHHHHHHHHHHHc-cCCC-CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCC------------
Confidence 5432 2333322111 1111 11122333322234565 77888889999998888776654
Q ss_pred cccccCHHHHHHHHHhc
Q psy7673 225 EQVTIGFRHFDIALKRI 241 (541)
Q Consensus 225 ~~~~i~~~d~~~al~~~ 241 (541)
|+.+|+.+|+.-+
T Consensus 238 ----V~~~dv~~Aa~lv 250 (584)
T PRK13406 238 ----VEEEDLALAARLV 250 (584)
T ss_pred ----CCHHHHHHHHHHH
Confidence 9999999998754
No 269
>KOG1970|consensus
Probab=98.46 E-value=4.4e-06 Score=83.20 Aligned_cols=182 Identities=18% Similarity=0.283 Sum_probs=99.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCc-------cc------cccccCchHHHHHHHHHHH-H------
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGP-------EL------LNMYLGESERAVRQCFQRA-R------ 71 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~-------~l------~~~~~~~~~~~~~~~~~~~-~------ 71 (541)
.-..+-+||+||+||||||.++.+++++++.+++-... .+ ........-..+......+ +
T Consensus 107 ~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~ 186 (634)
T KOG1970|consen 107 KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQM 186 (634)
T ss_pred CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhh
Confidence 34556789999999999999999999999988876521 11 1111111111111122222 1
Q ss_pred -----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCCCCcc------ccCCC
Q psy7673 72 -----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN-RPDIIDPA------VMRPG 139 (541)
Q Consensus 72 -----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~-~~~~l~~~------l~~~~ 139 (541)
...+.+|+|||+-..+... ..+.+...+..+-.. ...++++|.|.. ..+..+.. +.-..
T Consensus 187 ~g~~~~~~~~liLveDLPn~~~~d--------~~~~f~evL~~y~s~-g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ 257 (634)
T KOG1970|consen 187 SGDDLRTDKKLILVEDLPNQFYRD--------DSETFREVLRLYVSI-GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEP 257 (634)
T ss_pred cccccccCceEEEeeccchhhhhh--------hHHHHHHHHHHHHhc-CCCcEEEEEeccccCCCcchhhhchhhhhhcc
Confidence 1245699999997764331 223334444433322 223334443332 22222222 21112
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCC-HHHHHhhhhcCCCCHHHHHHHHHHHHHHHH
Q psy7673 140 RFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD-FDKIAADERCEGFSGADLEQLVKEAREQAI 206 (541)
Q Consensus 140 r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~ 206 (541)
|. ..|.|.+-...-....|+.++...........+. ...+- ..+.+ +.+||+.+++.....+.
T Consensus 258 ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~--~i~~~-s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 258 RI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE--LICQG-SGGDIRSAINSLQLSSS 321 (634)
T ss_pred Cc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH--HHHHh-cCccHHHHHhHhhhhcc
Confidence 44 3688998899999999999998765432211111 11111 23344 45699999988877763
No 270
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.45 E-value=6.8e-08 Score=85.81 Aligned_cols=25 Identities=44% Similarity=0.747 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
+.++|++||||||||++++.+...+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 4599999999999999999999866
No 271
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.44 E-value=1.6e-06 Score=90.28 Aligned_cols=178 Identities=19% Similarity=0.252 Sum_probs=96.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc-----cCchHHHHHH----HHHHHHhcCCceEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY-----LGESERAVRQ----CFQRARNSQPCVIFF 80 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~-----~~~~~~~~~~----~~~~~~~~~~~il~i 80 (541)
.....++|.|++|||||++++++.... +.+++.++|..+.... +|........ ..........+.|||
T Consensus 159 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l 238 (469)
T PRK10923 159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 (469)
T ss_pred ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEE
Confidence 356679999999999999999998876 5789999998763211 1110000000 000011223579999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC-----C----CCCeEEEEecCCC-------CCCCccccCCCCCCeE
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-----G----RGGVFLMAATNRP-------DIIDPAVMRPGRFDRI 144 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~----~~~~~vi~t~~~~-------~~l~~~l~~~~r~~~~ 144 (541)
||++.|... .+..|+..++... . ..++.+|++++.. ..+.+.|.. |+. .
T Consensus 239 ~~i~~l~~~------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~ 303 (469)
T PRK10923 239 DEIGDMPLD------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-V 303 (469)
T ss_pred eccccCCHH------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-c
Confidence 999998533 4456666665421 0 1246888888743 234455554 553 3
Q ss_pred EEecCCCHHHHH----HHHHHHHhcCCCCC--CCCCCCHHHHH-hhhhcCCCCHHHHHHHHHHHHHHH
Q psy7673 145 LFVNLPNEQDRK----EILLALTKQGKDPM--MGEDVDFDKIA-ADERCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 145 i~~~~p~~~~r~----~il~~~~~~~~~~~--~~~~~~~~~l~-~~~~~~g~~~~dl~~l~~~a~~~a 205 (541)
+.+..|...+|. .++++++....... ....+..+.+. +....---+.++|+++++++...+
T Consensus 304 ~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred eeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 555556555554 45555554321110 00112222111 012222225688888888775543
No 272
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.42 E-value=3.7e-06 Score=70.37 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.....++++|+||+||||++..++..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 445679999999999999999999877
No 273
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.39 E-value=4.6e-06 Score=86.65 Aligned_cols=176 Identities=20% Similarity=0.244 Sum_probs=95.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc-----cCchHHHHH----HHHHHHHhcCCceEEEc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY-----LGESERAVR----QCFQRARNSQPCVIFFD 81 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~-----~~~~~~~~~----~~~~~~~~~~~~il~iD 81 (541)
....++++|++||||+++++++.... +.+++.++|..+.... +|....... ...........++||||
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 244 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLD 244 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEe
Confidence 45679999999999999999998765 5789999998763221 111000000 00001112234799999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-------CCCCccccCCCCCCeEE
Q psy7673 82 EIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP-------DIIDPAVMRPGRFDRIL 145 (541)
Q Consensus 82 e~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~-------~~l~~~l~~~~r~~~~i 145 (541)
|++.+... .+..|+..++... ...++.+|++|+.. ..+.+.+.. |+. .+
T Consensus 245 ~i~~l~~~------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~ 309 (457)
T PRK11361 245 EIGEMPLV------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VI 309 (457)
T ss_pred chhhCCHH------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cc
Confidence 99998533 4456666665321 01347888888743 123333332 332 46
Q ss_pred EecCCCHHHHHH----HHHHHHhcCCCCC--CCCCCCHHHHH-hhhhcCCCCHHHHHHHHHHHHHH
Q psy7673 146 FVNLPNEQDRKE----ILLALTKQGKDPM--MGEDVDFDKIA-ADERCEGFSGADLEQLVKEAREQ 204 (541)
Q Consensus 146 ~~~~p~~~~r~~----il~~~~~~~~~~~--~~~~~~~~~l~-~~~~~~g~~~~dl~~l~~~a~~~ 204 (541)
.+..|...+|.+ ++++++....... ....++.+.+. +....---+.++|+++++++...
T Consensus 310 ~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 310 HLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 677777776655 3334444321100 00112222211 00222122568888888877543
No 274
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.37 E-value=1.5e-06 Score=80.02 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=67.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccccc-----------------------CchHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYL-----------------------GESERAVR 64 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~-----------------------~~~~~~~~ 64 (541)
|.+.+..++|+||||+|||+++..++.+. +..++++++.++..... .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 45566679999999999999999988654 67899999875211000 01111233
Q ss_pred HHHHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 65 QCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 65 ~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
.+...+....+++|+||-+..+.......... ...+.+..++..|..+....++.++.|+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~-~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~ 149 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSDDRI-SRNRELARQLTLLLSLARKKNLAVVITNQV 149 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCCccH-HHHHHHHHHHHHHHHHHHHcCCEEEEEccc
Confidence 33444445578999999999886432211111 111222233333333334556777777653
No 275
>PRK15115 response regulator GlrR; Provisional
Probab=98.36 E-value=4.5e-06 Score=86.33 Aligned_cols=170 Identities=19% Similarity=0.265 Sum_probs=94.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHH---------------HHhcCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQR---------------ARNSQP 75 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~---------------~~~~~~ 75 (541)
....++|+|++|||||++++.+.+.. +.+++.++|..+..... -..+|.. ......
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEG 229 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCC
Confidence 34579999999999999999998775 57999999987632210 0111110 112234
Q ss_pred ceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-C------CCCccccCCC
Q psy7673 76 CVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP-D------IIDPAVMRPG 139 (541)
Q Consensus 76 ~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~-~------~l~~~l~~~~ 139 (541)
++|||||+|.|... .+..|+..++... ...++.+|++|+.. . .+.+.+..
T Consensus 230 gtl~l~~i~~l~~~------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~-- 295 (444)
T PRK15115 230 GTLFLDEIGDMPAP------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYY-- 295 (444)
T ss_pred CEEEEEccccCCHH------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHH--
Confidence 79999999998543 3446666665321 01257888888742 0 12222222
Q ss_pred CCCeEEEecCCCHHHHHH----HHHHHHhcCCCC--CCCCCCCHHHHH-hhhhcCCCCHHHHHHHHHHHHHH
Q psy7673 140 RFDRILFVNLPNEQDRKE----ILLALTKQGKDP--MMGEDVDFDKIA-ADERCEGFSGADLEQLVKEAREQ 204 (541)
Q Consensus 140 r~~~~i~~~~p~~~~r~~----il~~~~~~~~~~--~~~~~~~~~~l~-~~~~~~g~~~~dl~~l~~~a~~~ 204 (541)
|+. .+.+..|...+|.+ ++++++...... .....++-+.+. +....-.-+.++|+++++++...
T Consensus 296 ~l~-~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 296 RLN-VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred hhc-eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 232 46677787877754 334454432110 001112222221 11222122567888888777543
No 276
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=3.4e-06 Score=79.78 Aligned_cols=123 Identities=13% Similarity=0.140 Sum_probs=82.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCc--------cc--c-ccccC--chHHHHHHHHHHHHh----c
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGP--------EL--L-NMYLG--ESERAVRQCFQRARN----S 73 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~--------~l--~-~~~~~--~~~~~~~~~~~~~~~----~ 73 (541)
..+.+..+||+||.|+||+.++.++|+.+-+.-..-.|. |+ + ....+ .....++.+...+.. .
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 456778999999999999999999998873310000110 11 0 00000 112334444444432 3
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLP 150 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p 150 (541)
...|++||++|.+.. ...+.|++.+++ ++.++++|..|+.++.+.|.++| |+. .+.|+++
T Consensus 95 ~~kv~ii~~ad~mt~------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 95 PYKIYIIHEADRMTL------------DAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CceEEEEechhhcCH------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 347999999999853 456799999995 55667888899999999999998 884 6666654
No 277
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.35 E-value=2.7e-06 Score=74.79 Aligned_cols=108 Identities=23% Similarity=0.292 Sum_probs=63.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc------------------------cCchHHHHHHHHHHH
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY------------------------LGESERAVRQCFQRA 70 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~------------------------~~~~~~~~~~~~~~~ 70 (541)
++|+|+||+|||+++..++... +.+++++++....... ..............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 5778888765432210 001111122234444
Q ss_pred HhcCCceEEEcCCccccCCCCC--CCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy7673 71 RNSQPCVIFFDEIDALCPKRSS--LGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD 129 (541)
Q Consensus 71 ~~~~~~il~iDe~d~l~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~ 129 (541)
....+.+++|||+..+...... ........+.+..+...+. ..++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 5667899999999988644211 0111222333444444333 34566777766543
No 278
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.31 E-value=5.5e-06 Score=78.13 Aligned_cols=171 Identities=21% Similarity=0.339 Sum_probs=100.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc-----ccCchH--HHHHHHHHHHHhcCCceEEEcCCcc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM-----YLGESE--RAVRQCFQRARNSQPCVIFFDEIDA 85 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~-----~~~~~~--~~~~~~~~~~~~~~~~il~iDe~d~ 85 (541)
..+||.|++||||-.++++..... +.+|+.+||..+-.+ .+|... .....+|+.+.. +.+++|||..
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgE 304 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGE 304 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhh
Confidence 358999999999999999887655 689999999877432 122211 222345555443 6999999987
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHhcCCC-C--------CCCeEEEEecCCC--CCCCccccCCC---CCCeEEEecCCC
Q psy7673 86 LCPKRSSLGDNNSSMRIVNQLLTEMDGFE-G--------RGGVFLMAATNRP--DIIDPAVMRPG---RFDRILFVNLPN 151 (541)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~--------~~~~~vi~t~~~~--~~l~~~l~~~~---r~~~~i~~~~p~ 151 (541)
+.+ +++..|++.+.+-. . .-++.|||+|..+ +.+...-.|.+ |. .++.+..|.
T Consensus 305 mSp------------~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~Pp 371 (511)
T COG3283 305 MSP------------RLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPP 371 (511)
T ss_pred cCH------------HHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCc
Confidence 743 45667777776531 1 1248999999854 12222222222 33 356777777
Q ss_pred HHHHHH--------HHHHHHhcCCCCCCCCCCCHHHHHh-hh-hcCCCCHHHHHHHHHHHHHHH
Q psy7673 152 EQDRKE--------ILLALTKQGKDPMMGEDVDFDKIAA-DE-RCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 152 ~~~r~~--------il~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~g~~~~dl~~l~~~a~~~a 205 (541)
..||.. +++.+++.... ..+..+.+.+.. .+ ...| +.|++.+.+-+|...+
T Consensus 372 LRer~~di~pL~e~Fv~q~s~elg~--p~pkl~~~~~~~L~~y~WpG-NVRqL~N~iyRA~s~~ 432 (511)
T COG3283 372 LRERPQDIMPLAELFVQQFSDELGV--PRPKLAADLLTVLTRYAWPG-NVRQLKNAIYRALTLL 432 (511)
T ss_pred cccCcccchHHHHHHHHHHHHHhCC--CCCccCHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHh
Confidence 766654 22333333322 122223222221 12 2234 5688888888876655
No 279
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.30 E-value=6.5e-06 Score=86.80 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=61.5
Q ss_pred CeEEEEecCCC--CCCCccccCCCCCC---eEEEecC--C-CHHHHHHHHHHHHhcCCCCCCCCCCCHHHHH----hhhh
Q psy7673 118 GVFLMAATNRP--DIIDPAVMRPGRFD---RILFVNL--P-NEQDRKEILLALTKQGKDPMMGEDVDFDKIA----ADER 185 (541)
Q Consensus 118 ~~~vi~t~~~~--~~l~~~l~~~~r~~---~~i~~~~--p-~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~----~~~~ 185 (541)
++.||++++.. ..++++|.. ||. ..+.|.. + +.+.+..+++.+.+..........++.+.++ ...+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57888888864 467899987 875 4555552 2 4566666766554432211011123332222 1111
Q ss_pred cCC------CCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHH
Q psy7673 186 CEG------FSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALK 239 (541)
Q Consensus 186 ~~g------~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 239 (541)
.+| ...++|..+++.|...|..+..+ .++.+|+.+|+.
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~----------------~i~~~~v~~a~~ 398 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAE----------------LTTAEHVLEAKK 398 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccc----------------eecHHHHHHHHH
Confidence 222 33689999999988888766433 388899988874
No 280
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.28 E-value=1.2e-06 Score=83.17 Aligned_cols=137 Identities=22% Similarity=0.386 Sum_probs=78.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC-c--EEEEeCccccccccCchHHHHHHHHHHHH-----------hcCCceEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGI-N--FISVKGPELLNMYLGESERAVRQCFQRAR-----------NSQPCVIF 79 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~-~--~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~il~ 79 (541)
..+.+||+||+|||||++++.+-+.+.- . ...++++.. .+...++.+++... ..+..|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 4678999999999999999988776632 2 334555432 22223333222110 12335999
Q ss_pred EcCCccccCCCCCCCCCChhHHHHHHHHHH-hcC--CCC--------CCCeEEEEecCCCC---CCCccccCCCCCCeEE
Q psy7673 80 FDEIDALCPKRSSLGDNNSSMRIVNQLLTE-MDG--FEG--------RGGVFLMAATNRPD---IIDPAVMRPGRFDRIL 145 (541)
Q Consensus 80 iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~-l~~--~~~--------~~~~~vi~t~~~~~---~l~~~l~~~~r~~~~i 145 (541)
|||++.-.++.-+ ....+ +|+++ ++. ..+ -.++.+||++++.. .+++.+.| .| .++
T Consensus 106 iDDlN~p~~d~yg------tq~~i-ElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~ 175 (272)
T PF12775_consen 106 IDDLNMPQPDKYG------TQPPI-ELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NIL 175 (272)
T ss_dssp EETTT-S---TTS--------HHH-HHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEE
T ss_pred ecccCCCCCCCCC------CcCHH-HHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEE
Confidence 9999876544322 11222 34443 332 111 12478888887543 46777877 56 489
Q ss_pred EecCCCHHHHHHHHHHHHhcC
Q psy7673 146 FVNLPNEQDRKEILLALTKQG 166 (541)
Q Consensus 146 ~~~~p~~~~r~~il~~~~~~~ 166 (541)
.++.|+.+....|+..++...
T Consensus 176 ~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 176 NIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp E----TCCHHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHHHHHHhhh
Confidence 999999999999999988853
No 281
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.26 E-value=3.4e-06 Score=83.12 Aligned_cols=103 Identities=25% Similarity=0.390 Sum_probs=60.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-EEEEeCccccccccCc------hHHHHHHHHHHHHhcCCceEEEcCCc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGIN-FISVKGPELLNMYLGE------SERAVRQCFQRARNSQPCVIFFDEID 84 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~-~~~i~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~il~iDe~d 84 (541)
..+++|++|||++|+|||+|+-.+.+.+... -..+...+++...... ...-+..+..... ....+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 4579999999999999999999999887541 1111111221110000 0011222222222 223599999997
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy7673 85 ALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP 128 (541)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~ 128 (541)
.- +.....++..|+..+- ..++++|+|+|.+
T Consensus 138 V~---------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT---------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred cc---------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 63 2233456666666553 3568999999953
No 282
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1.1e-05 Score=74.60 Aligned_cols=122 Identities=11% Similarity=0.014 Sum_probs=80.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc--------------ccccc---CchHHHHHHHHHHHH---
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL--------------LNMYL---GESERAVRQCFQRAR--- 71 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l--------------~~~~~---~~~~~~~~~~~~~~~--- 71 (541)
..++..+||+||.|+||..++.++|+.+-+.--.-.|... .--+. ......++.+.....
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc
Confidence 3567789999999999999999999877221000012211 00000 111223334433332
Q ss_pred --hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecC
Q psy7673 72 --NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNL 149 (541)
Q Consensus 72 --~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~ 149 (541)
.....|++|+++|.+. ....+.|++.+++ ++.+.++|.+|+.++.+.+.++| |+. .+.++.
T Consensus 84 ~e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~ 146 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLS 146 (261)
T ss_pred hhcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecCC
Confidence 1235799999999984 3456799999995 56678999999999999999999 875 466665
Q ss_pred C
Q psy7673 150 P 150 (541)
Q Consensus 150 p 150 (541)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 5
No 283
>KOG1051|consensus
Probab=98.24 E-value=5.1e-06 Score=89.05 Aligned_cols=101 Identities=29% Similarity=0.381 Sum_probs=75.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccc------cc---ccCchHHHHHHHHHHHHhcCCceEEEc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELL------NM---YLGESERAVRQCFQRARNSQPCVIFFD 81 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~------~~---~~~~~~~~~~~~~~~~~~~~~~il~iD 81 (541)
+...++|.||.|+|||-+++++|..+ .-.++.+|++++. +. |.|..+ ...+.+..++...+||+||
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~--gg~LteavrrrP~sVVLfd 667 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFE 667 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchh--HHHHHHHHhcCCceEEEEe
Confidence 67789999999999999999999988 4568999998632 22 344433 3356666677777999999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC
Q psy7673 82 EIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP 128 (541)
Q Consensus 82 e~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~ 128 (541)
|||.-. ..+++.|++.+++.. +..+.+||+|+|.-
T Consensus 668 eIEkAh------------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 668 EIEKAH------------PDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVG 711 (898)
T ss_pred chhhcC------------HHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccc
Confidence 999864 346778888888642 23568999999964
No 284
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.22 E-value=3.6e-06 Score=87.64 Aligned_cols=178 Identities=19% Similarity=0.221 Sum_probs=94.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc-----cCchHHHH----HHHHHHHHhcCCceEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY-----LGESERAV----RQCFQRARNSQPCVIFF 80 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~-----~~~~~~~~----~~~~~~~~~~~~~il~i 80 (541)
.....+++.|++||||+++++++.... +.+++.+||..+.... +|.....+ ............+.|||
T Consensus 155 ~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l 234 (463)
T TIGR01818 155 RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFL 234 (463)
T ss_pred CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEE
Confidence 345679999999999999999998765 5789999998763221 11100000 00000111234579999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-------CCCCccccCCCCCC-e
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP-------DIIDPAVMRPGRFD-R 143 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~-------~~l~~~l~~~~r~~-~ 143 (541)
||++.|... .+..|++.++... ...++.+|++++.. ..+.+.|.. |+. .
T Consensus 235 ~ei~~l~~~------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~ 300 (463)
T TIGR01818 235 DEIGDMPLD------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVI 300 (463)
T ss_pred EchhhCCHH------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcc
Confidence 999998533 3456666665321 11246788888743 123334443 443 2
Q ss_pred EEEecCCC--HHHHHHHHHHHHhcCCCCC--CCCCCCHHHHHh-hhh-cCCCCHHHHHHHHHHHHHHH
Q psy7673 144 ILFVNLPN--EQDRKEILLALTKQGKDPM--MGEDVDFDKIAA-DER-CEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 144 ~i~~~~p~--~~~r~~il~~~~~~~~~~~--~~~~~~~~~l~~-~~~-~~g~~~~dl~~l~~~a~~~a 205 (541)
.|.+++.. .++...++++++....... ....++.+.+.. ... ..| +.++|+++++++...+
T Consensus 301 ~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg-NvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 301 RIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPG-NVRQLENLCRWLTVMA 367 (463)
T ss_pred eecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC-hHHHHHHHHHHHHHhC
Confidence 34444443 3455555555554432110 011122222220 011 122 4588888888776544
No 285
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.22 E-value=2.1e-05 Score=76.36 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCC--C-------CCCeEEEEecCCC-------CCCCccccCCCCCCeEEEecCC-CHHHHHHHHHHH
Q psy7673 100 MRIVNQLLTEMDGFE--G-------RGGVFLMAATNRP-------DIIDPAVMRPGRFDRILFVNLP-NEQDRKEILLAL 162 (541)
Q Consensus 100 ~~~~~~l~~~l~~~~--~-------~~~~~vi~t~~~~-------~~l~~~l~~~~r~~~~i~~~~p-~~~~r~~il~~~ 162 (541)
.+++..|+..+++-. . .-..+||+++|.. ....++|++ |+. .+.++.| +.++-.+|.+..
T Consensus 250 ~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~ 326 (361)
T smart00763 250 IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKL 326 (361)
T ss_pred HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHH
Confidence 456777887776421 1 1125789999966 256789988 986 7888866 668888899888
Q ss_pred Hhc
Q psy7673 163 TKQ 165 (541)
Q Consensus 163 ~~~ 165 (541)
+..
T Consensus 327 ~~~ 329 (361)
T smart00763 327 LRN 329 (361)
T ss_pred hcc
Confidence 875
No 286
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.14 E-value=7.8e-05 Score=67.70 Aligned_cols=182 Identities=16% Similarity=0.150 Sum_probs=101.5
Q ss_pred CCCCc-EEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeCcccccc---------ccC----ch----HHHHHHHHHHH
Q psy7673 12 KSTPS-GVLLCGPPGCGKTLLAKAVANEAG---INFISVKGPELLNM---------YLG----ES----ERAVRQCFQRA 70 (541)
Q Consensus 12 ~~~~~-~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~~~~l~~~---------~~~----~~----~~~~~~~~~~~ 70 (541)
.+... -+.++|+.|+|||.++|++..-++ .-+++++...+... ... .. +..-+.+....
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 44455 467899999999999997766552 22345554322111 011 11 11111222222
Q ss_pred H-hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccC------CCCCCe
Q psy7673 71 R-NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMR------PGRFDR 143 (541)
Q Consensus 71 ~-~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~------~~r~~~ 143 (541)
+ ...|.++++||++.+..+. ...+..|.+.-++....-.+++++-. ++.+.++. ..|+..
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~---------le~Lrll~nl~~~~~~~l~ivL~Gqp----~L~~~lr~~~l~e~~~R~~i 193 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSA---------LEALRLLTNLEEDSSKLLSIVLIGQP----KLRPRLRLPVLRELEQRIDI 193 (269)
T ss_pred HhCCCCeEEeehhHhhhChhH---------HHHHHHHHhhcccccCceeeeecCCc----ccchhhchHHHHhhhheEEE
Confidence 2 3456899999999985431 11222222222222222223444332 23322221 126765
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCC-CCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKEILLALTKQGKD-PMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEI 209 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~ 209 (541)
.|++++.+.++-...+++.++..+. ..+..+.....+. ..+.| .|+-+.+++..|...|....
T Consensus 194 r~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~--~~sqg-~P~lin~~~~~Al~~a~~a~ 257 (269)
T COG3267 194 RIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIH--EASQG-IPRLINNLATLALDAAYSAG 257 (269)
T ss_pred EEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHH--HHhcc-chHHHHHHHHHHHHHHHHcC
Confidence 6888999999999999999987532 2333333344455 56677 58888899888888886543
No 287
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7.6e-06 Score=80.82 Aligned_cols=26 Identities=42% Similarity=0.701 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
-..|+|++||||||||++++.+..-+
T Consensus 197 GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 197 GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cCCcEEEecCCCCchHHhhhhhcccC
Confidence 46789999999999999999987655
No 288
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=2.7e-05 Score=74.01 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=84.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE-EE-EeCcc------ccc----c----c-cC--chHHHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINF-IS-VKGPE------LLN----M----Y-LG--ESERAVRQCFQRAR 71 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~-~~-i~~~~------l~~----~----~-~~--~~~~~~~~~~~~~~ 71 (541)
..+.+..+||+|| +||+++++.+|..+-+.- .. -.|.. +.. + . .+ .....++.+...+.
T Consensus 20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~ 97 (290)
T PRK07276 20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS 97 (290)
T ss_pred cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence 4677889999996 689999999998773211 00 01211 000 0 0 01 11234444444443
Q ss_pred h----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEe
Q psy7673 72 N----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFV 147 (541)
Q Consensus 72 ~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~ 147 (541)
. ....|++||++|.+.. ...+.|++.+++ +..+.++|.+|+.++.+.|.++| |+. .|.|
T Consensus 98 ~~p~~~~~kV~II~~ad~m~~------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f 160 (290)
T PRK07276 98 QSGYEGKQQVFIIKDADKMHV------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RTQ-IFHF 160 (290)
T ss_pred hCcccCCcEEEEeehhhhcCH------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cce-eeeC
Confidence 2 2347999999999842 356799999995 44557888888889999999999 884 7777
Q ss_pred cCCCHHHHHHHHH
Q psy7673 148 NLPNEQDRKEILL 160 (541)
Q Consensus 148 ~~p~~~~r~~il~ 160 (541)
+. +.++..+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 65 5555555553
No 289
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.12 E-value=8.5e-06 Score=75.82 Aligned_cols=116 Identities=23% Similarity=0.281 Sum_probs=65.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc----cC-------------------chHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY----LG-------------------ESERAVR 64 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~----~~-------------------~~~~~~~ 64 (541)
|.+.+..++|+|+||+|||+++..++.+. +.+++++++..+.... .. +....+.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 45667778999999999999999998755 7889999987321100 00 0011112
Q ss_pred HHHHHHHhcCCceEEEcCCccccCCCCCC-CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 65 QCFQRARNSQPCVIFFDEIDALCPKRSSL-GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 65 ~~~~~~~~~~~~il~iDe~d~l~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
.+..... .++.+|+||.+..+....... .......+.+..++..|..+....++.++.|+..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~ 161 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQV 161 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccc
Confidence 2221111 577899999999876432111 1111112233333333333333456677777653
No 290
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.12 E-value=1.1e-05 Score=65.21 Aligned_cols=23 Identities=43% Similarity=0.778 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
|+|+|+||+|||++++.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999998774
No 291
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=2.6e-05 Score=74.80 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=87.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------------cEEEEeCccccccccCchHHHHHHHHHHHH-----hc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGI-------------NFISVKGPELLNMYLGESERAVRQCFQRAR-----NS 73 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~-------------~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-----~~ 73 (541)
.+.+..+||+|+.|.||+.+++.+++.+-+ .+..++.. +.. .....++.+...+. ..
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccC
Confidence 456778899999999999999999988722 12222210 010 11123444444332 13
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHH
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQ 153 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~ 153 (541)
...|++||++|.+. ....+.|++.+++ ++.+.++|.+|+.++.+-+.+++ |+ ..++|.+++.+
T Consensus 90 ~~KvvII~~~e~m~------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~ 152 (299)
T PRK07132 90 QKKILIIKNIEKTS------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQ 152 (299)
T ss_pred CceEEEEecccccC------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHH
Confidence 55799999998873 2356789999996 34456777777777889899988 77 48999999998
Q ss_pred HHHHHHHH
Q psy7673 154 DRKEILLA 161 (541)
Q Consensus 154 ~r~~il~~ 161 (541)
+..+.|..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 88877764
No 292
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.11 E-value=8.7e-06 Score=84.22 Aligned_cols=138 Identities=22% Similarity=0.357 Sum_probs=78.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc-----cCchHHHH----HHHHHHHHhcCCceEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY-----LGESERAV----RQCFQRARNSQPCVIFF 80 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~-----~~~~~~~~----~~~~~~~~~~~~~il~i 80 (541)
.....++++|++||||+++++++.... +.+++.++|..+.... +|.....+ ............++|||
T Consensus 160 ~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l 239 (441)
T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 (441)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEE
Confidence 345679999999999999999998665 5789999998763221 11100000 00000012234589999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCC-------CCCccccCCCCCCeE
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRPD-------IIDPAVMRPGRFDRI 144 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~~-------~l~~~l~~~~r~~~~ 144 (541)
||+|.|... .+..|+..++.-. ...++.+|++|+..- .+.+.|.. |+. .
T Consensus 240 dei~~l~~~------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~--~l~-~ 304 (441)
T PRK10365 240 DEIGDISPM------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY--RLN-V 304 (441)
T ss_pred eccccCCHH------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-c
Confidence 999999543 3446666665421 012466787776431 11222221 221 4
Q ss_pred EEecCCCHHHHHH----HHHHHHhc
Q psy7673 145 LFVNLPNEQDRKE----ILLALTKQ 165 (541)
Q Consensus 145 i~~~~p~~~~r~~----il~~~~~~ 165 (541)
+.+..|...+|.+ ++++++..
T Consensus 305 ~~i~~ppLreR~~Di~~l~~~~l~~ 329 (441)
T PRK10365 305 VAIEVPSLRQRREDIPLLAGHFLQR 329 (441)
T ss_pred ceecCCChhhcchhHHHHHHHHHHH
Confidence 5666777766654 44455443
No 293
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.10 E-value=1.3e-05 Score=79.57 Aligned_cols=112 Identities=20% Similarity=0.280 Sum_probs=68.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc------cC--------chHHHHHHHHHHHHhc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY------LG--------ESERAVRQCFQRARNS 73 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~------~~--------~~~~~~~~~~~~~~~~ 73 (541)
|..+..-++|+|+||+|||+++..++..+ +.++++++..+-.... .+ ..+..+..++..+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 46667779999999999999999998766 4578888765422110 00 0112345566666667
Q ss_pred CCceEEEcCCccccCCCCCCCC--CChhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGD--NNSSMRIVNQLLTEMDGFEGRGGVFLMAATN 126 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~ 126 (541)
+|.+|+||+++.+......... ....+.....|.+... ..++.+|.+.+
T Consensus 158 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak----~~~itvilvgh 208 (372)
T cd01121 158 KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK----ERNIPIFIVGH 208 (372)
T ss_pred CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH----HcCCeEEEEee
Confidence 8999999999998644322111 1122334444444433 34456666554
No 294
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.10 E-value=2.6e-05 Score=75.10 Aligned_cols=117 Identities=23% Similarity=0.270 Sum_probs=69.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc----------------ccCchHHHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM----------------YLGESERAVRQCFQRAR 71 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~~ 71 (541)
|.++.+.++|+||||+|||+++..++.+. +..++++++...... .....+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 35566678999999999999988876554 678888887543221 11122333333333334
Q ss_pred hcCCceEEEcCCccccCCCCCC---CCC--ChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 72 NSQPCVIFFDEIDALCPKRSSL---GDN--NSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 72 ~~~~~il~iDe~d~l~~~~~~~---~~~--~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
...+++|+||-+..+.+...-. ++. ....+.+..++..|.......++.+|.|..-
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQv 191 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQI 191 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 5678999999999988642111 111 1122333444444444444566778877653
No 295
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.10 E-value=1.7e-05 Score=80.89 Aligned_cols=112 Identities=22% Similarity=0.330 Sum_probs=69.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc------cCc--------hHHHHHHHHHHHHhc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY------LGE--------SERAVRQCFQRARNS 73 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~------~~~--------~~~~~~~~~~~~~~~ 73 (541)
|..+...++|+|+||+|||+++..++... +.++++++..+-.... .+. .+..+..++......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 46677779999999999999999998766 6788888875532211 000 112244555666667
Q ss_pred CCceEEEcCCccccCCCCCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy7673 74 QPCVIFFDEIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN 126 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~ 126 (541)
+|.+|+||++..+....... +.....+.....|.+... ..++.++.+++
T Consensus 156 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak----~~~itvilv~h 206 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAK----QRGIAVFLVGH 206 (446)
T ss_pred CCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHH----HcCCEEEEEee
Confidence 88999999999886543221 111122334444444443 34456666654
No 296
>KOG1051|consensus
Probab=98.09 E-value=5e-05 Score=81.70 Aligned_cols=188 Identities=21% Similarity=0.300 Sum_probs=125.2
Q ss_pred hcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCccccc--cccCchHHHHHHHHHHHHh-cCC
Q psy7673 9 LFGKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELLN--MYLGESERAVRQCFQRARN-SQP 75 (541)
Q Consensus 9 ~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~-~~~ 75 (541)
.|.++..+|-+|.|.||+|||.++.-+++.. +..++.++...+.. ++.++.+..++.+..++.. ...
T Consensus 202 iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~g 281 (898)
T KOG1051|consen 202 ILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGG 281 (898)
T ss_pred HHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCc
Confidence 3556666899999999999999999999877 34566677665433 4578889999999988874 345
Q ss_pred ceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCC
Q psy7673 76 CVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLP 150 (541)
Q Consensus 76 ~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p 150 (541)
.||+|||+|-+.+.... .......+.|...+. +..+.+|++|...+ .-+|++-+ ||. .+.++.|
T Consensus 282 vILfigelh~lvg~g~~----~~~~d~~nlLkp~L~----rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~p 350 (898)
T KOG1051|consen 282 VILFLGELHWLVGSGSN----YGAIDAANLLKPLLA----RGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIP 350 (898)
T ss_pred EEEEecceeeeecCCCc----chHHHHHHhhHHHHh----cCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccC
Confidence 68889999999876544 112333444443333 44589999887322 45789988 997 6678899
Q ss_pred CHHHHHHHHHHHHhcCCCCC-----CCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHH
Q psy7673 151 NEQDRKEILLALTKQGKDPM-----MGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAIL 207 (541)
Q Consensus 151 ~~~~r~~il~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~ 207 (541)
+.++-..||+..-..+..+. ....+....+.....+..+-+.-...++++|......
T Consensus 351 S~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~ 412 (898)
T KOG1051|consen 351 SVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKS 412 (898)
T ss_pred cccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhh
Confidence 98888888888776632111 1111111122212244556677777888887665544
No 297
>KOG2228|consensus
Probab=98.09 E-value=1.7e-05 Score=74.44 Aligned_cols=140 Identities=21% Similarity=0.385 Sum_probs=86.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH---HhCCcEEEEeCccccc---------------------cccCchHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVAN---EAGINFISVKGPELLN---------------------MYLGESERAVRQCFQ 68 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~---~~~~~~~~i~~~~l~~---------------------~~~~~~~~~~~~~~~ 68 (541)
+...++++.||.|+|||+++-..-. +.+-+++.+....... +.++.....+..++.
T Consensus 47 gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~ 126 (408)
T KOG2228|consen 47 GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLE 126 (408)
T ss_pred cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHH
Confidence 4667899999999999998775533 4566666554332211 123333444444444
Q ss_pred HHHhc-----CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCccccCCCC
Q psy7673 69 RARNS-----QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD---IIDPAVMRPGR 140 (541)
Q Consensus 69 ~~~~~-----~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~---~l~~~l~~~~r 140 (541)
..+.. .+.|.++||||.+++.... -.+..+++.-+ +...++-||+.|.+.+ .+...+++ |
T Consensus 127 ~L~~~~~~t~~~ViFIldEfDlf~~h~rQ--------tllYnlfDisq--s~r~Piciig~Ttrld~lE~LEKRVKS--R 194 (408)
T KOG2228|consen 127 ALKKGDETTSGKVIFILDEFDLFAPHSRQ--------TLLYNLFDISQ--SARAPICIIGVTTRLDILELLEKRVKS--R 194 (408)
T ss_pred HHhcCCCCCCceEEEEeehhhccccchhh--------HHHHHHHHHHh--hcCCCeEEEEeeccccHHHHHHHHHHh--h
Confidence 44321 2234456899999765322 23444444433 2345678888887665 46678888 9
Q ss_pred CCeE-EEec-CCCHHHHHHHHHHHHh
Q psy7673 141 FDRI-LFVN-LPNEQDRKEILLALTK 164 (541)
Q Consensus 141 ~~~~-i~~~-~p~~~~r~~il~~~~~ 164 (541)
|.+. |.+. ..+..+..++++..+.
T Consensus 195 Fshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 195 FSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cccceeeccCCCChHHHHHHHHHHhc
Confidence 9865 5554 4478899999998885
No 298
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.07 E-value=3e-05 Score=74.79 Aligned_cols=117 Identities=22% Similarity=0.262 Sum_probs=68.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc----------------ccCchHHHHHHHHHHHHh
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM----------------YLGESERAVRQCFQRARN 72 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~~~ 72 (541)
.+..+.+.|+||||+|||+++..++.+. +..++++++..-... .....+..+..+-..++.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 5556668899999999999999987554 778888887542211 011222333333233345
Q ss_pred cCCceEEEcCCccccCCCCCC---CCCC--hhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy7673 73 SQPCVIFFDEIDALCPKRSSL---GDNN--SSMRIVNQLLTEMDGFEGRGGVFLMAATNRP 128 (541)
Q Consensus 73 ~~~~il~iDe~d~l~~~~~~~---~~~~--~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~ 128 (541)
..+++|+||-+-.+.+...-. ++.. ...+.+...+..|.......++.+|.|..-.
T Consensus 132 ~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr 192 (325)
T cd00983 132 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLR 192 (325)
T ss_pred cCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 568999999999988642211 1111 1123334444444433345567777776543
No 299
>KOG1968|consensus
Probab=98.06 E-value=4.5e-06 Score=90.20 Aligned_cols=201 Identities=18% Similarity=0.280 Sum_probs=118.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccC-----c--hHHHHHHHH---HHH-HhcCC-ceEEEcCCc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLG-----E--SERAVRQCF---QRA-RNSQP-CVIFFDEID 84 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~-----~--~~~~~~~~~---~~~-~~~~~-~il~iDe~d 84 (541)
.++++||||+|||+.++.+|.+++..++++|.++..+.+.. + ....+...+ ... ..+.. .||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 46899999999999999999999999999999876554211 1 011111112 000 01122 388999999
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHh
Q psy7673 85 ALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~ 164 (541)
.+... .+..+..+...+. ...+.+|++||+.......... +....++|+.|+.+++..-+..++.
T Consensus 439 ~~~~~---------dRg~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~ 503 (871)
T KOG1968|consen 439 GMFGE---------DRGGVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICK 503 (871)
T ss_pred cccch---------hhhhHHHHHHHHH----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhc
Confidence 98652 2223344444333 3345788899977665544444 5556799999999999998888887
Q ss_pred cCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 165 QGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
..... +..+ .++.+. + .+++||++.+.........--.... .+.+...... ...++..+|+.+...+.
T Consensus 504 se~~k-i~~~-~l~~~s--~----~~~~DiR~~i~~lq~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~d~~~~~L~ 571 (871)
T KOG1968|consen 504 SEGIK-ISDD-VLEEIS--K----LSGGDIRQIIMQLQFWSLSKPAELP-KKKGTPIKTS-KKNITVKDFDAAEGLLD 571 (871)
T ss_pred cccee-cCcH-HHHHHH--H----hcccCHHHHHHHHhhhhccchhhhc-cccCcccccc-ccccccchhHHHhhhcc
Confidence 65432 2222 233333 2 2466888887777666332110000 1111111111 14466677777666554
No 300
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.99 E-value=4.9e-05 Score=68.48 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
.++|+||||||||+++..++... +.++++++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 37899999999999999887654 6677777653
No 301
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.98 E-value=1.6e-05 Score=75.60 Aligned_cols=101 Identities=21% Similarity=0.284 Sum_probs=59.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE-EEEeCcccccc-------ccCchHHHHHHHHHHHHhcCCceEEEcCC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINF-ISVKGPELLNM-------YLGESERAVRQCFQRARNSQPCVIFFDEI 83 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~-~~i~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~il~iDe~ 83 (541)
..+++|+++||+-|.|||+|+-.+...+..+- ..+....++.. ..|+. .-+..+-.+.. ....||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeee
Confidence 35789999999999999999999998875432 11221122111 01211 11111111111 12369999998
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 84 DALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 84 d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
+.= .-....++..|++.|- ..+|++++|+|.
T Consensus 140 ~Vt---------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~ 170 (367)
T COG1485 140 EVT---------DIADAMILGRLLEALF----ARGVVLVATSNT 170 (367)
T ss_pred eec---------ChHHHHHHHHHHHHHH----HCCcEEEEeCCC
Confidence 642 2233456666766554 347899999994
No 302
>PF14516 AAA_35: AAA-like domain
Probab=97.97 E-value=0.00064 Score=66.96 Aligned_cols=174 Identities=15% Similarity=0.141 Sum_probs=94.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCc-------------------------------
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGE------------------------------- 58 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~------------------------------- 58 (541)
.++.-+.|.||..+|||+++..+.+.+ ++.++.+|+..+.......
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 457789999999999999999997766 8899999987653311110
Q ss_pred hHHHHHHHHHHH--H-hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCC---CCCeEEEEec-CCCCCC
Q psy7673 59 SERAVRQCFQRA--R-NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEG---RGGVFLMAAT-NRPDII 131 (541)
Q Consensus 59 ~~~~~~~~~~~~--~-~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~vi~t~-~~~~~l 131 (541)
........|.+. . ..+|-||+|||+|.+.... ....+.+..|-...+.-.. ..++.+|.+. ......
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~ 182 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYII 182 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccc
Confidence 011122223221 1 2467899999999997431 1122333332222221111 1123333332 222222
Q ss_pred CccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHH
Q psy7673 132 DPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEA 201 (541)
Q Consensus 132 ~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a 201 (541)
...-.+|-.+...|.++.-+.+|...+++.+-... ... .++.+- ..|.|. |.=+..+|...
T Consensus 183 ~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~~~-~~~~l~--~~tgGh-P~Lv~~~~~~l 243 (331)
T PF14516_consen 183 LDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----SQE-QLEQLM--DWTGGH-PYLVQKACYLL 243 (331)
T ss_pred cCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----CHH-HHHHHH--HHHCCC-HHHHHHHHHHH
Confidence 11113333344668888889999888877653321 111 255555 678884 54444444443
No 303
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.96 E-value=5.9e-05 Score=63.72 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=31.2
Q ss_pred CCCchhhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 3 PVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 3 ~~~~~~~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
+++++--|...++-.++|+||+|||||++.|++|.-.
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 3455556677888899999999999999999999865
No 304
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.96 E-value=7.1e-05 Score=69.50 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=49.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc-----------------------------c--
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY-----------------------------L-- 56 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~-----------------------------~-- 56 (541)
|.+++..++|.|++|||||+++..++... +..+++++..+-.... .
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 56677789999999999999986665544 5677777654211100 0
Q ss_pred CchHHHHHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 57 GESERAVRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
......+..+........|.+++||++-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 0012334445555555578999999998764
No 305
>KOG2543|consensus
Probab=97.94 E-value=6.5e-05 Score=71.88 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=81.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccccc---------------ccC----chHHHHHH---HHHH-
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM---------------YLG----ESERAVRQ---CFQR- 69 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~---------------~~~----~~~~~~~~---~~~~- 69 (541)
.-|..++|+|-+|||||.+++.+.+.++.+.+.++|-+.+.. ..+ .....+.. .|.+
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 356778999999999999999999999999999998664331 011 11122222 2222
Q ss_pred --HHhc-CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC-eEE
Q psy7673 70 --ARNS-QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD-RIL 145 (541)
Q Consensus 70 --~~~~-~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~-~~i 145 (541)
+... ..-.|++|++|.+-.. ...+++.+++.-+-+. ...+.++.+....+..- +.+-|.++ ..+
T Consensus 108 ~~~t~~d~~~~liLDnad~lrD~---------~a~ll~~l~~L~el~~-~~~i~iils~~~~e~~y--~~n~g~~~i~~l 175 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADALRDM---------DAILLQCLFRLYELLN-EPTIVIILSAPSCEKQY--LINTGTLEIVVL 175 (438)
T ss_pred HHhhccCceEEEEEcCHHhhhcc---------chHHHHHHHHHHHHhC-CCceEEEEeccccHHHh--hcccCCCCceEE
Confidence 1111 2357789999998411 2234455554433222 22344444433322211 11112232 568
Q ss_pred EecCCCHHHHHHHHHHHH
Q psy7673 146 FVNLPNEQDRKEILLALT 163 (541)
Q Consensus 146 ~~~~p~~~~r~~il~~~~ 163 (541)
+|+.|+.++...|+.+--
T Consensus 176 ~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 176 HFPQYSVEETQVILSRDN 193 (438)
T ss_pred ecCCCCHHHHHHHHhcCC
Confidence 999999999999986543
No 306
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.93 E-value=0.00018 Score=69.77 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=83.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH--hCC---cEEEEeCccccc--------------c-----ccCchHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANE--AGI---NFISVKGPELLN--------------M-----YLGESERAVRQCFQ 68 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~--~~~---~~~~i~~~~l~~--------------~-----~~~~~~~~~~~~~~ 68 (541)
.....+.|+|++|+|||++|+.+++. ... .++.++...-.. . ...........+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 56667889999999999999999987 322 133444332111 0 01122333333333
Q ss_pred HHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEec
Q psy7673 69 RARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVN 148 (541)
Q Consensus 69 ~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~ 148 (541)
. ....+.+|+|||++... .+..+...+... ..+..||.||.... +-.... .-...++++
T Consensus 97 ~-L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~--~~~~kilvTTR~~~-v~~~~~---~~~~~~~l~ 155 (287)
T PF00931_consen 97 L-LKDKRCLLVLDDVWDEE--------------DLEELREPLPSF--SSGSKILVTTRDRS-VAGSLG---GTDKVIELE 155 (287)
T ss_dssp H-HCCTSEEEEEEEE-SHH--------------HH-------HCH--HSS-EEEEEESCGG-GGTTHH---SCEEEEECS
T ss_pred h-hccccceeeeeeecccc--------------cccccccccccc--cccccccccccccc-cccccc---ccccccccc
Confidence 3 34457999999987651 122222222211 22346777777532 111111 114679999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCC-CCCHHHHHhhhhcCCCCHHHHHHH
Q psy7673 149 LPNEQDRKEILLALTKQGKDPMMGE-DVDFDKIAADERCEGFSGADLEQL 197 (541)
Q Consensus 149 ~p~~~~r~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~dl~~l 197 (541)
..+.++-.++++............. .-....++ +.+.| .|--|..+
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~--~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIV--EKCGG-LPLALKLI 202 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHH--HHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccc--ccccc-cccccccc
Confidence 9999999999999877543101111 11234555 66766 45444444
No 307
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.90 E-value=5.4e-05 Score=70.07 Aligned_cols=116 Identities=22% Similarity=0.220 Sum_probs=63.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccccc--------------------C---chHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYL--------------------G---ESERAVR 64 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~--------------------~---~~~~~~~ 64 (541)
|...+..++|+|+||+|||+++..++.+. +.++++++......... . +....+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 45666679999999999999999998765 67888887643211000 0 0111122
Q ss_pred HHHHHHHhcCCceEEEcCCccccCCCCCCCC-CChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 65 QCFQRARNSQPCVIFFDEIDALCPKRSSLGD-NNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 65 ~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
.+.... ...+++|+||-+..+......... .....+.+..++..|..+....++.||.+++.
T Consensus 95 ~~~~~~-~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~ 157 (218)
T cd01394 95 ETETFA-DEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQV 157 (218)
T ss_pred HHHHHH-hcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 222222 234789999999988533211110 01111222233333333333456777777664
No 308
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.90 E-value=7.7e-05 Score=67.89 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
....+--+-|.|||||||||+.+.+|.-.
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45566678899999999999999999754
No 309
>PRK09354 recA recombinase A; Provisional
Probab=97.87 E-value=0.00011 Score=71.45 Aligned_cols=116 Identities=23% Similarity=0.255 Sum_probs=66.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc----------------ccCchHHHHHHHHHHHHh
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM----------------YLGESERAVRQCFQRARN 72 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~~~ 72 (541)
.+..+.++|+||+|||||+++..++.+. +..+++++...-... .....+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 5555668899999999999999886544 778888887542211 011222333322223344
Q ss_pred cCCceEEEcCCccccCCCCCC---CCC--ChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 73 SQPCVIFFDEIDALCPKRSSL---GDN--NSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 73 ~~~~il~iDe~d~l~~~~~~~---~~~--~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
..+.+|+||-+-.+.+...-. ++. ....+.+...+..|.......++.+|.|..-
T Consensus 137 ~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQv 196 (349)
T PRK09354 137 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQI 196 (349)
T ss_pred CCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEEee
Confidence 568999999999988632110 111 1122333333333333333556677777553
No 310
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.86 E-value=1.5e-05 Score=66.15 Aligned_cols=30 Identities=43% Similarity=0.847 Sum_probs=27.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
|+|.|+||+||||+++.+++.++++++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999988776555
No 311
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.86 E-value=2.9e-05 Score=79.28 Aligned_cols=174 Identities=23% Similarity=0.357 Sum_probs=102.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh--CCcEEEEeCcccccc-----ccCchHHHHHHHHHHH-----HhcCCceEEEc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA--GINFISVKGPELLNM-----YLGESERAVRQCFQRA-----RNSQPCVIFFD 81 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~--~~~~~~i~~~~l~~~-----~~~~~~~~~~~~~~~~-----~~~~~~il~iD 81 (541)
....+++.|.+||||-.++|++.+.. ..+++.+||..+-.. .+|.........+.+- .....+.||+|
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFld 414 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLD 414 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHH
Confidence 44569999999999999999997665 678999999765432 2333322222222111 12233799999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHHHHhcCCC--------CCCCeEEEEecCCCCCCCccccCCCCCC-------eEEE
Q psy7673 82 EIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--------GRGGVFLMAATNRPDIIDPAVMRPGRFD-------RILF 146 (541)
Q Consensus 82 e~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~vi~t~~~~~~l~~~l~~~~r~~-------~~i~ 146 (541)
||..+. -.++..|+..+.+-. ..-.+.||++|+.+= ..+.+-|+|. ..+.
T Consensus 415 eIgd~p------------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~ 479 (606)
T COG3284 415 EIGDMP------------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFV 479 (606)
T ss_pred Hhhhch------------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCee
Confidence 998873 356678888877521 122488999998641 1122233442 2355
Q ss_pred ecCCCHHHHHH---HHHHHHhcCCCCCCCCCCCHHHHH--hhhhcCCCCHHHHHHHHHHHHHHH
Q psy7673 147 VNLPNEQDRKE---ILLALTKQGKDPMMGEDVDFDKIA--ADERCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 147 ~~~p~~~~r~~---il~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~dl~~l~~~a~~~a 205 (541)
+..|...+|.+ .|.+++..++. -.-.++-+.++ ++....| +.++|.++++.+...+
T Consensus 480 i~lP~lr~R~d~~~~l~~~~~~~~~--~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~ 540 (606)
T COG3284 480 ITLPPLRERSDRIPLLDRILKREND--WRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS 540 (606)
T ss_pred eccCchhcccccHHHHHHHHHHccC--CCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC
Confidence 66676666554 55555555432 11122222222 1134456 5688888888876555
No 312
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=0.00015 Score=64.48 Aligned_cols=93 Identities=24% Similarity=0.283 Sum_probs=57.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEeCcccccc-ccC-------------chHHHHHHHHHHHHhc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA--------GINFISVKGPELLNM-YLG-------------ESERAVRQCFQRARNS 73 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~--------~~~~~~i~~~~l~~~-~~~-------------~~~~~~~~~~~~~~~~ 73 (541)
.+.|+.|||||||||+.|-+|+.+ +..+..+|-.+-+.. ..+ ...-+-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999876 345666664332211 110 0111222344455678
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
.|.|+++|||.... -...++..+ +.++-+|.|.+-
T Consensus 218 ~PEViIvDEIGt~~--------------d~~A~~ta~-----~~GVkli~TaHG 252 (308)
T COG3854 218 SPEVIIVDEIGTEE--------------DALAILTAL-----HAGVKLITTAHG 252 (308)
T ss_pred CCcEEEEeccccHH--------------HHHHHHHHH-----hcCcEEEEeecc
Confidence 89999999997642 112333333 346788888774
No 313
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.84 E-value=0.00066 Score=68.43 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=68.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCC
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDN 96 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~ 96 (541)
.++|+||.+|||||+++.+.....-..++++..+.......- ......+..........+||||++.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh--------
Confidence 789999999999999988888775546666655553322111 1111222222222447999999998721
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCccccCCCCCCeEEEecCCCHHHHHH
Q psy7673 97 NSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD---IIDPAVMRPGRFDRILFVNLPNEQDRKE 157 (541)
Q Consensus 97 ~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~---~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 157 (541)
....+....+.... . ++|.+++..- .+.+.+ +||. ..+.+.+.+..|...
T Consensus 109 -----W~~~lk~l~d~~~~--~-v~itgsss~ll~~~~~~~L--~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 -----WERALKYLYDRGNL--D-VLITGSSSSLLSKEISESL--AGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred -----HHHHHHHHHccccc--e-EEEECCchhhhccchhhhc--CCCc-eeEEECCCCHHHHHh
Confidence 11222223332111 2 4444444322 233333 4584 678888999999865
No 314
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.84 E-value=6.8e-05 Score=69.83 Aligned_cols=116 Identities=18% Similarity=0.156 Sum_probs=65.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---C------CcEEEEeCcccccc-c---------------c-------Cc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---G------INFISVKGPELLNM-Y---------------L-------GE 58 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~------~~~~~i~~~~l~~~-~---------------~-------~~ 58 (541)
|.+...-+.|+|+||+|||+++..++... + ..+++++..+-... . . ..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 56667779999999999999999998664 3 67788887542110 0 0 00
Q ss_pred hHHHHHHHHHHH----HhcCCceEEEcCCccccCCCCCCCC-CChhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy7673 59 SERAVRQCFQRA----RNSQPCVIFFDEIDALCPKRSSLGD-NNSSMRIVNQLLTEMDGFEGRGGVFLMAATN 126 (541)
Q Consensus 59 ~~~~~~~~~~~~----~~~~~~il~iDe~d~l~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~ 126 (541)
....+...+... ....+.+|+||.+..+......... .....+.+..++..|..+....++.||.+.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 111111222222 2346789999999988654211110 0111233444555555444445567776664
No 315
>PHA00729 NTP-binding motif containing protein
Probab=97.83 E-value=3.6e-05 Score=69.84 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
.+++|+|+||||||++|.+++++++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999875
No 316
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.82 E-value=1.9e-05 Score=71.86 Aligned_cols=72 Identities=24% Similarity=0.240 Sum_probs=40.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcc--cccc----c----cCchHHHHHHHHHHHH--hcCCceEEEcC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPE--LLNM----Y----LGESERAVRQCFQRAR--NSQPCVIFFDE 82 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~--l~~~----~----~~~~~~~~~~~~~~~~--~~~~~il~iDe 82 (541)
+..+||||+||+|||++++.++.. .-++..+.+. +.+. . ....-..+...+..+. ...+..|+||+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 566999999999999999998632 2222222211 1100 0 1111122223333332 24468999999
Q ss_pred CccccC
Q psy7673 83 IDALCP 88 (541)
Q Consensus 83 ~d~l~~ 88 (541)
++.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 988754
No 317
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.81 E-value=9.1e-05 Score=75.73 Aligned_cols=113 Identities=25% Similarity=0.311 Sum_probs=68.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc------cCc--------hHHHHHHHHHHHHhc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY------LGE--------SERAVRQCFQRARNS 73 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~------~~~--------~~~~~~~~~~~~~~~ 73 (541)
|..+..-++|.|+||+|||+++..++... +.++++++..+-..+. .+. .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 46677779999999999999999998766 4578888865432210 000 011244555556667
Q ss_pred CCceEEEcCCccccCCCCCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 74 QPCVIFFDEIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
+|.+|+||.+..+....... +.....++....|.+... ..++.++.+++.
T Consensus 170 ~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak----~~giTvllt~hv 221 (454)
T TIGR00416 170 NPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAK----TRGIAIFIVGHV 221 (454)
T ss_pred CCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHH----HhCCEEEEEecc
Confidence 88999999999986443211 111122333334444333 345666666553
No 318
>KOG0482|consensus
Probab=97.81 E-value=2.1e-05 Score=77.48 Aligned_cols=207 Identities=15% Similarity=0.169 Sum_probs=113.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHH-HHH-------HHhcCCceEEEcCCcc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQC-FQR-------ARNSQPCVIFFDEIDA 85 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~-~~~-------~~~~~~~il~iDe~d~ 85 (541)
-.-+|+|.|.||+-||-|.+.+.+-....++.-...+- -+|-+...++.- ..+ +.....+|-.|||+|+
T Consensus 374 GdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS---GVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDK 450 (721)
T KOG0482|consen 374 GDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS---GVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDK 450 (721)
T ss_pred cceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC---ccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhh
Confidence 34479999999999999999999866444333221110 011111111110 000 0112347889999999
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-------------CCCccccCCCCCCeE-EEecCCC
Q psy7673 86 LCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-------------IIDPAVMRPGRFDRI-LFVNLPN 151 (541)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-------------~l~~~l~~~~r~~~~-i~~~~p~ 151 (541)
+.......-.+-...+.++--..-+. ..-+.+..|++++|+.. .||.+|++ ||+.. +-...|+
T Consensus 451 M~e~DRtAIHEVMEQQTISIaKAGI~-TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pd 527 (721)
T KOG0482|consen 451 MDESDRTAIHEVMEQQTISIAKAGIN-TTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPD 527 (721)
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhccc-cchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCc
Confidence 86443221000000111111000000 01123457888888532 58899999 99854 4456888
Q ss_pred HHHHHHHHHHHHhcCC----CCCCCCCCCHHHH----Hhhh----------------------------hcCCC-CHHHH
Q psy7673 152 EQDRKEILLALTKQGK----DPMMGEDVDFDKI----AADE----------------------------RCEGF-SGADL 194 (541)
Q Consensus 152 ~~~r~~il~~~~~~~~----~~~~~~~~~~~~l----~~~~----------------------------~~~g~-~~~dl 194 (541)
.+.-..+.+++.--+. .+...+.++.+.+ +.++ ...+| ++|.|
T Consensus 528 rd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtL 607 (721)
T KOG0482|consen 528 RDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTL 607 (721)
T ss_pred ccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHH
Confidence 7777777766543221 1111222332222 1101 12233 58889
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 195 EQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 195 ~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
-.+++.+...|..|.++. +..+|+.+||..+.
T Consensus 608 L~IlRls~AlarLRls~~----------------V~~~DV~EALRLme 639 (721)
T KOG0482|consen 608 LGILRLSTALARLRLSDS----------------VEEDDVNEALRLME 639 (721)
T ss_pred HHHHHHHHHHHHhhhccc----------------cchhhHHHHHHHHH
Confidence 999999988888887755 88999999998663
No 319
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.80 E-value=0.00014 Score=68.07 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=51.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc--------------c------------------
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM--------------Y------------------ 55 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~--------------~------------------ 55 (541)
|.+.+..++++|+||+|||+++.+++.+. +.++++++..+-... +
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 56677789999999999999999997543 677777775432110 0
Q ss_pred -cCchHHHHHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 56 -LGESERAVRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 56 -~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
.......+..+.......++.+++||++..+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 00112233444444445578999999998663
No 320
>PRK04296 thymidine kinase; Provisional
Probab=97.80 E-value=0.00024 Score=63.98 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA---GINFISVK 47 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~ 47 (541)
.-.+++||+|+|||+++..++.++ +..++.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 457899999999999999988776 56666664
No 321
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.80 E-value=3.5e-05 Score=69.62 Aligned_cols=123 Identities=19% Similarity=0.184 Sum_probs=59.3
Q ss_pred EEEEcCCCCcHHHHHHHH-HHHh---CCcEEEEeCccccccccCc----hHH-------------HHHHHHHHHHhcCCc
Q psy7673 18 VLLCGPPGCGKTLLAKAV-ANEA---GINFISVKGPELLNMYLGE----SER-------------AVRQCFQRARNSQPC 76 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~-a~~~---~~~~~~i~~~~l~~~~~~~----~~~-------------~~~~~~~~~~~~~~~ 76 (541)
.+++|.||+|||+.+-.. .... +.+++. |...|.-+.... ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999987554 3332 555554 544332111100 000 001111111111458
Q ss_pred eEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCC
Q psy7673 77 VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLP 150 (541)
Q Consensus 77 il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p 150 (541)
+|+|||++.+.+.+..... .. ...++.+.. ....+.-|+.+|.++..+++.++. +.+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~~--~~----~~~~~~l~~-hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK--KV----PEIIEFLAQ-HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T----------HHHHGGGG-CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccccc--cc----hHHHHHHHH-hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 9999999999988655211 11 223344433 335568999999999999999987 77777766544
No 322
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.79 E-value=0.00028 Score=66.04 Aligned_cols=39 Identities=31% Similarity=0.385 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
|.+++..+||+||||+|||+++..++.+. +-+.+++...
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 67778889999999999999998876542 5666666543
No 323
>PRK05973 replicative DNA helicase; Provisional
Probab=97.78 E-value=0.0002 Score=66.11 Aligned_cols=39 Identities=36% Similarity=0.303 Sum_probs=32.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
|..++..++|.|+||+|||+++-.++.+. |.+++++++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 67777789999999999999999887655 7777777754
No 324
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.78 E-value=8.9e-05 Score=69.53 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=67.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCcccccc---------------------c-----
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLNM---------------------Y----- 55 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~~---------------------~----- 55 (541)
|.+++.-+.|+|+||+|||+++..++... +..+++++..+-+.. +
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 46667778999999999999999998553 267888887552110 0
Q ss_pred -cCchHHHHHHHHHHHHhc-CCceEEEcCCccccCCCCCCCC-CChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 56 -LGESERAVRQCFQRARNS-QPCVIFFDEIDALCPKRSSLGD-NNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 56 -~~~~~~~~~~~~~~~~~~-~~~il~iDe~d~l~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
..+....+..+....... ++.+|+||-+..+......... .....+.+..++..|..+....++.|+.|.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~ 169 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQV 169 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccE
Confidence 001111222222333344 7899999999987532111111 11222344555555554444556677777553
No 325
>PRK10536 hypothetical protein; Provisional
Probab=97.76 E-value=0.00016 Score=66.90 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
...+++.||+|||||+++.+++.+
T Consensus 74 ~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 74 KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999885
No 326
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.75 E-value=0.00011 Score=81.89 Aligned_cols=137 Identities=24% Similarity=0.306 Sum_probs=90.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc------ccc-ccCc--hHHH-HHHHHHHHHhcCCceEEEcC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL------LNM-YLGE--SERA-VRQCFQRARNSQPCVIFFDE 82 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l------~~~-~~~~--~~~~-~~~~~~~~~~~~~~il~iDe 82 (541)
+-.+.+||-|.||+|||+++.++|+..|..++.||.++- ++. ...+ .+-. ...-|-.+.+ ...-+++||
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDE 1619 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDE 1619 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeeh
Confidence 456789999999999999999999999999999997642 221 1111 1111 1222333333 236899999
Q ss_pred CccccCCCCCCCCCChhHHHHHHHHHHhcC------------CCCCCCeEEEEecCCCC------CCCccccCCCCCCeE
Q psy7673 83 IDALCPKRSSLGDNNSSMRIVNQLLTEMDG------------FEGRGGVFLMAATNRPD------IIDPAVMRPGRFDRI 144 (541)
Q Consensus 83 ~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~------------~~~~~~~~vi~t~~~~~------~l~~~l~~~~r~~~~ 144 (541)
+..-. ..++.-|=..++. +...+++.|+|+-|+-+ -+|..+.. ||. +
T Consensus 1620 iNLaS------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-v 1684 (4600)
T COG5271 1620 INLAS------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-V 1684 (4600)
T ss_pred hhhhH------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-e
Confidence 97542 1222222222221 13356788888888643 48999988 996 7
Q ss_pred EEecCCCHHHHHHHHHHHHhc
Q psy7673 145 LFVNLPNEQDRKEILLALTKQ 165 (541)
Q Consensus 145 i~~~~p~~~~r~~il~~~~~~ 165 (541)
+.+..++.++...|...+...
T Consensus 1685 V~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1685 VKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred EEecccccchHHHHHHhhCCc
Confidence 778888888888887776653
No 327
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.74 E-value=4.1e-05 Score=70.35 Aligned_cols=80 Identities=26% Similarity=0.384 Sum_probs=52.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH------HhCCcEEEEeCccccccccC-chHHHHHHHHHHH--------HhcCCc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVAN------EAGINFISVKGPELLNMYLG-ESERAVRQCFQRA--------RNSQPC 76 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~------~~~~~~~~i~~~~l~~~~~~-~~~~~~~~~~~~~--------~~~~~~ 76 (541)
.+....+||.||.|.|||.+++.+-. ++..+|+++||..+.++... ..-..++..|..+ +....+
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 34455689999999999999998853 45789999999988654210 0011111122111 223458
Q ss_pred eEEEcCCccccCCCC
Q psy7673 77 VIFFDEIDALCPKRS 91 (541)
Q Consensus 77 il~iDe~d~l~~~~~ 91 (541)
+||+|||..|..+.+
T Consensus 285 mlfldeigelgadeq 299 (531)
T COG4650 285 MLFLDEIGELGADEQ 299 (531)
T ss_pred eEehHhhhhcCccHH
Confidence 999999999865543
No 328
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.73 E-value=0.00031 Score=64.65 Aligned_cols=133 Identities=18% Similarity=0.294 Sum_probs=73.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEeCccccccc--------c------CchHHHH-------HHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGI--NFISVKGPELLNMY--------L------GESERAV-------RQCFQR 69 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~--~~~~i~~~~l~~~~--------~------~~~~~~~-------~~~~~~ 69 (541)
..+..+++.|++|||||+++..+...+.. ..+.+-+...-..+ . .+.+..+ ......
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 45668999999999999999999876632 22222222111110 0 0111111 111111
Q ss_pred HHh---cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEE
Q psy7673 70 ARN---SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILF 146 (541)
Q Consensus 70 ~~~---~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~ 146 (541)
... ..+.+|+|||+..- ....+.+..++. .....++.+|..++....+|+.++. -.+..+-
T Consensus 91 ~~~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~----~gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~ 154 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGDK----------KLKSKILRQFFN----NGRHYNISIIFLSQSYFHLPPNIRS--NIDYFII 154 (241)
T ss_pred hcccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHh----cccccceEEEEEeeecccCCHHHhh--cceEEEE
Confidence 111 22578899997421 011122233332 2335568999999999999999986 5666666
Q ss_pred ecCCCHHHHHHHHHHH
Q psy7673 147 VNLPNEQDRKEILLAL 162 (541)
Q Consensus 147 ~~~p~~~~r~~il~~~ 162 (541)
++ .+..++..|++.+
T Consensus 155 ~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 155 FN-NSKRDLENIYRNM 169 (241)
T ss_pred ec-CcHHHHHHHHHhc
Confidence 65 4666655555443
No 329
>PHA02624 large T antigen; Provisional
Probab=97.72 E-value=0.0001 Score=75.63 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=74.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
|.+..+.++|+||+|||||+++.++++.++..++.+|+..-.. . |.---.....+.+|||+-.-+...
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks----------~--FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL----------N--FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh----------H--HHhhhhhhceEEEeeecccccccc
Confidence 6677778999999999999999999999977777787543211 1 111111122589999985433311
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCC------CCC------CeEEEEecCCCCCCCccccCCCCCCeEEEecC
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFE------GRG------GVFLMAATNRPDIIDPAVMRPGRFDRILFVNL 149 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~------~~~------~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~ 149 (541)
........ -.-+..|-+.||+.. ... -...|.|+|. ..||..+.- ||...+.|..
T Consensus 495 ~~Lp~G~~-~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQG-MNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCcccc-cchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 10000000 011235555666641 000 1356777775 468888887 9988888863
No 330
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.72 E-value=4.5e-05 Score=66.83 Aligned_cols=23 Identities=48% Similarity=0.824 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999888
No 331
>PRK07261 topology modulation protein; Provisional
Probab=97.71 E-value=0.00011 Score=65.03 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGP 49 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~ 49 (541)
-++|+|+||+||||+++.++..++.+++.+|.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 488999999999999999999999888877643
No 332
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00041 Score=67.40 Aligned_cols=151 Identities=19% Similarity=0.299 Sum_probs=92.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh--CCcEEEEeCcccccc--------------ccCchHHHHHHHHHHHHhcCC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA--GINFISVKGPELLNM--------------YLGESERAVRQCFQRARNSQP 75 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~--~~~~~~i~~~~l~~~--------------~~~~~~~~~~~~~~~~~~~~~ 75 (541)
.-+..-+||-|.||.|||||+-+++..+ ..++.|+...+-..+ ..-..+.++..+...+...+|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 4567778999999999999999998887 347999987653221 112245678888888888999
Q ss_pred ceEEEcCCccccCCCCCCCCC--ChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-CccccCCCCCCeEEEecCCCH
Q psy7673 76 CVIFFDEIDALCPKRSSLGDN--NSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDII-DPAVMRPGRFDRILFVNLPNE 152 (541)
Q Consensus 76 ~il~iDe~d~l~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l-~~~l~~~~r~~~~i~~~~p~~ 152 (541)
.+++||-|+.+....-++... +..+.....|.+.-.. .+-.+++++=......+ -|.++- +..+.+++|. -+.
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~--~~i~~fiVGHVTKeG~IAGPrvLE-HmVDtVlyFE-Gd~ 245 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKT--KNIAIFIVGHVTKEGAIAGPRVLE-HMVDTVLYFE-GDR 245 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHH--cCCeEEEEEEEcccccccCchhee-eeeeEEEEEe-ccC
Confidence 999999999998776443222 2345555556554431 12223444433333322 244442 2445556654 233
Q ss_pred HHHHHHHHHHHhcC
Q psy7673 153 QDRKEILLALTKQG 166 (541)
Q Consensus 153 ~~r~~il~~~~~~~ 166 (541)
.....||+..-.++
T Consensus 246 ~~~~RiLR~vKNRF 259 (456)
T COG1066 246 HSRYRILRSVKNRF 259 (456)
T ss_pred CCceeeeehhcccC
Confidence 45556666554443
No 333
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.70 E-value=0.0011 Score=65.61 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=48.7
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCC------------cc-ccC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD---IID------------PA-VMR 137 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~---~l~------------~~-l~~ 137 (541)
.+-|++|||+|++.+. .. ..+++.+..+-+.+++++|.+.+... .+. .. +-.
T Consensus 172 ~~iViiIDdLDR~~~~--------~i----~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeK 239 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPE--------EI----VELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEK 239 (325)
T ss_pred ceEEEEEcchhcCCcH--------HH----HHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHh
Confidence 4568889999999543 22 23334444333446777777766321 011 11 222
Q ss_pred CCCCCeEEEecCCCHHHHHHHHHHHHhcC
Q psy7673 138 PGRFDRILFVNLPNEQDRKEILLALTKQG 166 (541)
Q Consensus 138 ~~r~~~~i~~~~p~~~~r~~il~~~~~~~ 166 (541)
.++..+.+|.|+..+...++...+...
T Consensus 240 --iiq~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 240 --IIQVPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred --hcCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 456779999999999998888886553
No 334
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.69 E-value=0.00028 Score=63.92 Aligned_cols=107 Identities=14% Similarity=0.298 Sum_probs=57.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEE----EEeCcccccc------------ccCchHHHHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA-----GINFI----SVKGPELLNM------------YLGESERAVRQCFQRAR 71 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~----~i~~~~l~~~------------~~~~~~~~~~~~~~~~~ 71 (541)
.....++|.||+|+||||++|.++... |.++- .+....++.. .+......+..+++.+.
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~ 102 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAK 102 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhcc
Confidence 345778999999999999999998533 43221 0111111100 00111133455555554
Q ss_pred hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q psy7673 72 NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI 130 (541)
Q Consensus 72 ~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~ 130 (541)
..+|.++++||.-.-. +......+...+++.+.. .+..+|.+|+..+.
T Consensus 103 ~~~p~llllDEp~~gl-------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~ 150 (199)
T cd03283 103 KGEPVLFLLDEIFKGT-------NSRERQAASAAVLKFLKN----KNTIGIISTHDLEL 150 (199)
T ss_pred CCCCeEEEEecccCCC-------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHH
Confidence 4478999999974321 111112233344444431 24577777776653
No 335
>PRK08118 topology modulation protein; Reviewed
Probab=97.69 E-value=0.0001 Score=64.73 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKG 48 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~ 48 (541)
..|+|+|+||+||||+++.+++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 468999999999999999999999999888874
No 336
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.69 E-value=0.00028 Score=66.50 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=32.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~ 49 (541)
|.+++.-++|.|+||+|||+++..++... +.+++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 67788889999999999999999887654 7788888753
No 337
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.65 E-value=0.00033 Score=61.45 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=46.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccccc-----------------ccCchHHHHHHHHHHHHhcCCceEEE
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-----------------YLGESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~-----------------~~~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
+|++|++|+|||+++..++...+.+++++....-.+. ...+....+...+.... ++.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887778888865432211 01112223333332221 4679999
Q ss_pred cCCccccCCC
Q psy7673 81 DEIDALCPKR 90 (541)
Q Consensus 81 De~d~l~~~~ 90 (541)
|-+..+....
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9988776554
No 338
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.63 E-value=0.00072 Score=66.87 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=48.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
..+.|+++.||+|||||+++.+++... | -.+++.+++.. ... ..+.. -...++|+|||+..+.-
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~----L~~---~~lg~--v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYN----IST---RQIGL--VGRWDVVAFDEVATLKF 274 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHH----HHH---HHHhh--hccCCEEEEEcCCCCcC
Confidence 366799999999999999999988762 3 22333333221 111 11111 23458999999998743
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcC
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDG 112 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~ 112 (541)
. .....+..|...|+.
T Consensus 275 ~--------~~~~~v~imK~yMes 290 (449)
T TIGR02688 275 A--------KPKELIGILKNYMES 290 (449)
T ss_pred C--------chHHHHHHHHHHHHh
Confidence 2 223455566665554
No 339
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.62 E-value=0.00022 Score=63.09 Aligned_cols=75 Identities=21% Similarity=0.147 Sum_probs=45.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeCccc--ccccc-CchHHHHHHHHHHHHhcCCceEEEcCCcc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGPEL--LNMYL-GESERAVRQCFQRARNSQPCVIFFDEIDA 85 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~--~~~~~i~~~~l--~~~~~-~~~~~~~~~~~~~~~~~~~~il~iDe~d~ 85 (541)
...++..+.|.||+|+||||+++.++.... .--+.++...+ ..+.. -.....-+-.+..+-...|.++++||--.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 456777889999999999999999998651 11122222111 01110 11122333344555567889999999754
No 340
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.62 E-value=0.00048 Score=64.11 Aligned_cols=108 Identities=24% Similarity=0.324 Sum_probs=66.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCccccc--------------------------cc-----
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGPELLN--------------------------MY----- 55 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~~l~~--------------------------~~----- 55 (541)
|.+.+..+|+.|+||+|||+++..++.+. +-+++++...+-.. .+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 57788889999999999999999876433 77888887533110 00
Q ss_pred --cCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy7673 56 --LGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN 126 (541)
Q Consensus 56 --~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~ 126 (541)
.......+..+.......++.+++||.+..+... .+....+..+..+...+. ..++.++.+.+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~----~~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLY----DDPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTS----SSGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhc----CCHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 1123344455555555667799999999988221 122334556666666664 23344455544
No 341
>KOG0477|consensus
Probab=97.62 E-value=0.00022 Score=72.16 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=25.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
.++||+|.||||||-++|.+++-.+..++.
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~t 512 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFT 512 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEe
Confidence 379999999999999999999877555443
No 342
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.61 E-value=0.00052 Score=65.04 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
|.+++..++|+|+||+|||+++..++.+. +.++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 46677789999999999999999986643 5677777654
No 343
>KOG3347|consensus
Probab=97.60 E-value=5.7e-05 Score=62.29 Aligned_cols=35 Identities=31% Similarity=0.715 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
+...+||++|.|||||||++..+|..++.+++.+.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 34568999999999999999999999888776543
No 344
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.59 E-value=0.00091 Score=61.34 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
++.++|+||.|+|||++++.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999983
No 345
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.59 E-value=0.00061 Score=61.42 Aligned_cols=71 Identities=20% Similarity=0.326 Sum_probs=44.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccc---------------c-c----cCchHHHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLN---------------M-Y----LGESERAVRQCFQRAR 71 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~---------------~-~----~~~~~~~~~~~~~~~~ 71 (541)
|+-++|.||+|+||||.+-.+|..+ +..+..+.+..+.. . + ..+....+...++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5678999999999999999998776 55555555433211 0 0 1122334555566665
Q ss_pred hcCCceEEEcCCcc
Q psy7673 72 NSQPCVIFFDEIDA 85 (541)
Q Consensus 72 ~~~~~il~iDe~d~ 85 (541)
..+..+|+||-...
T Consensus 81 ~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR 94 (196)
T ss_dssp HTTSSEEEEEE-SS
T ss_pred hcCCCEEEEecCCc
Confidence 55567999997644
No 346
>PRK14974 cell division protein FtsY; Provisional
Probab=97.59 E-value=0.00073 Score=65.93 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=47.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc---------------c-----cCchHHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM---------------Y-----LGESERAVRQCFQR 69 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~---------------~-----~~~~~~~~~~~~~~ 69 (541)
..+.-++|+|++|+||||++..+|..+ +..+..+++..+... . .......+...+..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 346789999999999999999998766 566666665432110 0 01111222333344
Q ss_pred HHhcCCceEEEcCCcccc
Q psy7673 70 ARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 70 ~~~~~~~il~iDe~d~l~ 87 (541)
+......+|+||....+.
T Consensus 218 ~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHhCCCCEEEEECCCccC
Confidence 444456799999987763
No 347
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.58 E-value=0.0011 Score=75.42 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=82.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccccc---c------------cC---------------chHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM---Y------------LG---------------ESER 61 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~---~------------~~---------------~~~~ 61 (541)
....+-++|+||+|.|||+++...+...+ ++..+++..--+. + .+ ....
T Consensus 29 ~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (903)
T PRK04841 29 ANNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSS 107 (903)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHH
Confidence 44566799999999999999999987776 6655554311000 0 00 0111
Q ss_pred HHHHHHHHHHh-cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-ccccCCC
Q psy7673 62 AVRQCFQRARN-SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIID-PAVMRPG 139 (541)
Q Consensus 62 ~~~~~~~~~~~-~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~-~~l~~~~ 139 (541)
.+..++..... ..|.+|+|||+|.+.. ....+.+..|+.. . ..++.+|.++.....++ ..++-.
T Consensus 108 ~~~~~~~~l~~~~~~~~lvlDD~h~~~~--------~~~~~~l~~l~~~---~--~~~~~lv~~sR~~~~~~~~~l~~~- 173 (903)
T PRK04841 108 LFAQLFIELADWHQPLYLVIDDYHLITN--------PEIHEAMRFFLRH---Q--PENLTLVVLSRNLPPLGIANLRVR- 173 (903)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCcCCC--------hHHHHHHHHHHHh---C--CCCeEEEEEeCCCCCCchHhHHhc-
Confidence 23333444333 5688999999998831 2223334444432 2 23344444555322221 111111
Q ss_pred CCCeEEEec----CCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCC
Q psy7673 140 RFDRILFVN----LPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGF 189 (541)
Q Consensus 140 r~~~~i~~~----~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 189 (541)
...+.+. ..+.+|-.+++...+... + +..+...+. +.|+|.
T Consensus 174 --~~~~~l~~~~l~f~~~e~~~ll~~~~~~~----~-~~~~~~~l~--~~t~Gw 218 (903)
T PRK04841 174 --DQLLEIGSQQLAFDHQEAQQFFDQRLSSP----I-EAAESSRLC--DDVEGW 218 (903)
T ss_pred --CcceecCHHhCCCCHHHHHHHHHhccCCC----C-CHHHHHHHH--HHhCCh
Confidence 1223444 668899888887665531 1 222334445 677775
No 348
>KOG2383|consensus
Probab=97.58 E-value=0.0002 Score=69.05 Aligned_cols=28 Identities=36% Similarity=0.707 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
-++|+|++|||..|||||+|+-.+-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 3579999999999999999999887554
No 349
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.58 E-value=0.00034 Score=67.83 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=65.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCccccc-c--------c-------c--------C
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLN-M--------Y-------L--------G 57 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~-~--------~-------~--------~ 57 (541)
|......+.|+||||+|||+++..+|-.. +..+++++...-+. + + . -
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 46666678899999999999999887422 45788888654211 0 0 0 0
Q ss_pred chH---HHHHHHHHHHHhcCCceEEEcCCccccCCCCCCC-CCChhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy7673 58 ESE---RAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLG-DNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN 126 (541)
Q Consensus 58 ~~~---~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~ 126 (541)
..+ ..+..+........+.+|+||-+-.++...-... +.....+.+..++..|..+....++.||.|.+
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNq 244 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQ 244 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECc
Confidence 111 1122222233345678999999998865422111 11111223444444444444455667777755
No 350
>PRK04328 hypothetical protein; Provisional
Probab=97.58 E-value=0.00083 Score=63.31 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKG 48 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~ 48 (541)
|.+++..+||+|+||+|||+++..++.+. +-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 46678889999999999999999876542 556666654
No 351
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.014 Score=53.14 Aligned_cols=137 Identities=11% Similarity=-0.011 Sum_probs=93.5
Q ss_pred CCCCcEEEEEcCCC-CcHHHHHHHHHHHhCC---------cEEEEeCccccccc-cCchHHHHHHHHHHHH----hcCCc
Q psy7673 12 KSTPSGVLLCGPPG-CGKTLLAKAVANEAGI---------NFISVKGPELLNMY-LGESERAVRQCFQRAR----NSQPC 76 (541)
Q Consensus 12 ~~~~~~~ll~G~~G-~GKT~l~~~~a~~~~~---------~~~~i~~~~l~~~~-~~~~~~~~~~~~~~~~----~~~~~ 76 (541)
.+.....||.|..+ ++|..++.-++..+.. .+..+....-.... ..-....++.+...+. .....
T Consensus 12 ~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~K 91 (263)
T PRK06581 12 NKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYK 91 (263)
T ss_pred CcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcE
Confidence 45667899999998 9999999888776622 23333221100000 0112233444444332 23457
Q ss_pred eEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 77 VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 77 il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
|++|+++|.+.. ...+.|++.+++ ++.+.++|.+|+.++.+.+.++| |+ ..+.++.|+...-.
T Consensus 92 ViII~~ae~mt~------------~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~ 154 (263)
T PRK06581 92 VAIIYSAELMNL------------NAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYN 154 (263)
T ss_pred EEEEechHHhCH------------HHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHH
Confidence 999999999843 456799999996 55667888888889999999999 88 48889999998888
Q ss_pred HHHHHHHhc
Q psy7673 157 EILLALTKQ 165 (541)
Q Consensus 157 ~il~~~~~~ 165 (541)
+.....+..
T Consensus 155 e~~~~~~~p 163 (263)
T PRK06581 155 ELYSQFIQP 163 (263)
T ss_pred HHHHHhccc
Confidence 877776664
No 352
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.56 E-value=0.00048 Score=71.25 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=29.4
Q ss_pred chhhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 6 YPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 6 ~~~~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
++.-+..+++..++|.|++|||||++.|++|.-.
T Consensus 410 ~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 410 SELNFEVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred ccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3344578899999999999999999999999866
No 353
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.56 E-value=0.0005 Score=67.26 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=64.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCcccccc----------------cc--------C
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLNM----------------YL--------G 57 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~~----------------~~--------~ 57 (541)
|........|+|+||||||+++..+|-.. +..+++++...-+.. .. .
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 45566668899999999999999887432 357888887541110 00 0
Q ss_pred chH---HHHHHHHHHHHhcCCceEEEcCCccccCCCCCCC-CCChhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy7673 58 ESE---RAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLG-DNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN 126 (541)
Q Consensus 58 ~~~---~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~ 126 (541)
..+ ..+..+.......++.+|+||-+-.++...-... ......+.+..++..|..+....++.||.|..
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTNq 274 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQ 274 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 111 1122222223345678999999988765421111 11111233445555454444455667777754
No 354
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.55 E-value=0.00021 Score=67.60 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
....+++|.||+|+||||+++.++..+
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 334789999999999999999999877
No 355
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.54 E-value=0.0022 Score=64.85 Aligned_cols=56 Identities=25% Similarity=0.219 Sum_probs=48.4
Q ss_pred HHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhH
Q psy7673 303 QTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 303 ~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
..+..+|++.+.+|++|+.+++|+.|+.++++|.|.+.+|..+.||+||+|+-++.
T Consensus 135 ~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 67888888888448999999999999988888999988887689999999988774
No 356
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.54 E-value=9.3e-05 Score=65.79 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
.++..++|+|+||||||++++.+++.++.+++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4677899999999999999999999999877743
No 357
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.51 E-value=0.00038 Score=68.22 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=32.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCcc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPE 50 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~ 50 (541)
|.+.+..++|+||||+|||+++..++... +..++++++.+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 46667778899999999999999998663 34788888765
No 358
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.51 E-value=0.00047 Score=60.43 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=60.6
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeCccccc--------cccC-----chHHHHHHHHHHHHhcC
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGPELLN--------MYLG-----ESERAVRQCFQRARNSQ 74 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~--~~~~~i~~~~l~~--------~~~~-----~~~~~~~~~~~~~~~~~ 74 (541)
|...++..+.|.||+|+||||+++.++.... .--+.++..++.. ...+ ......+-.+..+-..+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 3567788899999999999999999997652 1112333222110 0000 11223334455566678
Q ss_pred CceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy7673 75 PCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD 129 (541)
Q Consensus 75 ~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~ 129 (541)
|.+|++||-..-. +....+.+..++..+. .. +..+|.++++.+
T Consensus 101 p~illlDEP~~~L--------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 143 (163)
T cd03216 101 ARLLILDEPTAAL--------TPAEVERLFKVIRRLR---AQ-GVAVIFISHRLD 143 (163)
T ss_pred CCEEEEECCCcCC--------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHH
Confidence 9999999975432 1222333333333332 22 346666777654
No 359
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.50 E-value=0.00075 Score=61.52 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
..++.-++|+||.|+|||++++.++.
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHH
Confidence 33456799999999999999999983
No 360
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.50 E-value=0.00026 Score=64.25 Aligned_cols=67 Identities=24% Similarity=0.434 Sum_probs=41.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeCc-cccc--------c-ccCchHHHHHHHHHHHHhcCCceEEEcC
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAG----INFISVKGP-ELLN--------M-YLGESERAVRQCFQRARNSQPCVIFFDE 82 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~----~~~~~i~~~-~l~~--------~-~~~~~~~~~~~~~~~~~~~~~~il~iDe 82 (541)
-++|.||+|+||||++++++..+. .+++.+... ++.. . ..+.....+...+..+....|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 378999999999999999988773 233333211 1110 0 0111122344555566667899999999
Q ss_pred C
Q psy7673 83 I 83 (541)
Q Consensus 83 ~ 83 (541)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 361
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.50 E-value=0.0012 Score=61.84 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGI 41 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~ 41 (541)
-...+..++|.||+|+|||++++.+++.+..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3556778999999999999999999988743
No 362
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.49 E-value=0.00068 Score=59.58 Aligned_cols=92 Identities=12% Similarity=0.213 Sum_probs=54.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHH--------------------HHHHHHHHHHhcCCc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESER--------------------AVRQCFQRARNSQPC 76 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~ 76 (541)
.+++.|+||+|||+++..++..++.+++++........ +... .+...+... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 58999999999999999999998877777765443211 1111 222233221 13357
Q ss_pred eEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcC
Q psy7673 77 VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDG 112 (541)
Q Consensus 77 il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 112 (541)
+++||-+..+....-...........+..++..+..
T Consensus 79 ~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 79 CVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred EEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHc
Confidence 899999988754321100001123344555665553
No 363
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.46 E-value=0.0006 Score=60.27 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=26.2
Q ss_pred chhhcCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 6 YPKLFGKSTPSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 6 ~~~~~~~~~~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
+.--|...++.-+.|.||+|+||||+++.+..
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 33345677888899999999999999999864
No 364
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.46 E-value=0.00086 Score=71.98 Aligned_cols=118 Identities=21% Similarity=0.254 Sum_probs=67.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEeCcccccc----------------ccCchHHHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANE---AGINFISVKGPELLNM----------------YLGESERAVRQCFQRAR 71 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~---~~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~~ 71 (541)
|..+.+.++|+||+|+|||+++..++.. .+..+++++..+-... .....+..+..+-....
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 3556677999999999999999776543 3677888876542220 01112222322222234
Q ss_pred hcCCceEEEcCCccccCCCCCC---CCC--ChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy7673 72 NSQPCVIFFDEIDALCPKRSSL---GDN--NSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP 128 (541)
Q Consensus 72 ~~~~~il~iDe~d~l~~~~~~~---~~~--~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~ 128 (541)
...+.+|+||-+..+.+...-. +.. ....+.+..++..|..+....++.+|.|..-.
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~ 197 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLR 197 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEecce
Confidence 4568999999999998622111 111 11122333444444444445567777775533
No 365
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.46 E-value=0.00031 Score=78.42 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=92.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc------ccccCch----HHHHHHHHHHHHhcCCceEEEcCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL------NMYLGES----ERAVRQCFQRARNSQPCVIFFDEI 83 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~------~~~~~~~----~~~~~~~~~~~~~~~~~il~iDe~ 83 (541)
....+||.||..+|||+++..+|++.|-.|+.||-.+.. +.|+... +-+- .++-+|.+. ..-|++||+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkE-GvLVeAlR~-GyWIVLDEL 964 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKE-GVLVEALRR-GYWIVLDEL 964 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeeh-hHHHHHHhc-CcEEEeecc
Confidence 345689999999999999999999999999999975432 2222111 1111 222233332 257899999
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHHhcCC------------CCCCCeEEEEecCCCC------CCCccccCCCCCCeEE
Q psy7673 84 DALCPKRSSLGDNNSSMRIVNQLLTEMDGF------------EGRGGVFLMAATNRPD------IIDPAVMRPGRFDRIL 145 (541)
Q Consensus 84 d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~------------~~~~~~~vi~t~~~~~------~l~~~l~~~~r~~~~i 145 (541)
..-. .+++..|=+.+++. .+.+++.++||-|+|. -+..+++. ||- ++
T Consensus 965 NLAp------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~ 1029 (4600)
T COG5271 965 NLAP------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EM 1029 (4600)
T ss_pred ccCc------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hh
Confidence 7542 24555555555542 2456788999999875 47788887 995 67
Q ss_pred EecCCCHHHHHHHHHHHHhc
Q psy7673 146 FVNLPNEQDRKEILLALTKQ 165 (541)
Q Consensus 146 ~~~~p~~~~r~~il~~~~~~ 165 (541)
+|..-.++|...||+..++.
T Consensus 1030 hFddipedEle~ILh~rc~i 1049 (4600)
T COG5271 1030 HFDDIPEDELEEILHGRCEI 1049 (4600)
T ss_pred hcccCcHHHHHHHHhccCcc
Confidence 77777789999999887764
No 366
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.46 E-value=0.0032 Score=62.91 Aligned_cols=88 Identities=26% Similarity=0.243 Sum_probs=63.5
Q ss_pred ccccccc---HHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEE-EEecCceeEeeCEEEEcCChhHHHhhhcccCch
Q psy7673 295 VWSVEGG---LQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVK-VTLNNDQHIEANHVVSALPAPKLGMLLHKQHPT 369 (541)
Q Consensus 295 ~~~~~~G---~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~-v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~ 369 (541)
.+...+| ...+.++|.+.+ +.|++|+.+++|++|..++++|. |.+.+|+ +.||+||+|+-++. ..+++.....
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~~~~~~~ 213 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLLPLLGLD 213 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH-HHHHHTTTTS
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc-eeeeeccccc
Confidence 4566777 789999999888 67899999999999999999998 9999997 99999999987664 4455443221
Q ss_pred hHhhhcCCCCccEEEEEEeeCC
Q psy7673 370 LGNLLSSIEHVNVAVINLAYEN 391 (541)
Q Consensus 370 ~~~~l~~~~~~~~~~v~l~~~~ 391 (541)
. ...++-...+.++.
T Consensus 214 ~-------~~~~~~~~~~~~~~ 228 (358)
T PF01266_consen 214 L-------PLRPVRGQVLVLEP 228 (358)
T ss_dssp S-------TEEEEEEEEEEEEG
T ss_pred c-------cccccceEEEEEcc
Confidence 1 34445555555543
No 367
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.45 E-value=0.0016 Score=63.99 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
..+.-.+|.||+|+|||++++.+++...
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 3455689999999999999999998773
No 368
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.45 E-value=0.0018 Score=58.65 Aligned_cols=36 Identities=36% Similarity=0.466 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
..+..+|.|++|||||++++.+...+ +.+++.+-..
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 34568889999999999999987665 6677766554
No 369
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.45 E-value=0.00066 Score=65.15 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=32.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~ 49 (541)
|..+...++|.|+||+|||+++..++... +.+++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 67788889999999999999999887654 6677777763
No 370
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.44 E-value=0.00033 Score=59.94 Aligned_cols=32 Identities=44% Similarity=0.910 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
++++|+||+||||+++.+++.++ ...++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHH
Confidence 68999999999999999999988 444555444
No 371
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.44 E-value=0.001 Score=76.99 Aligned_cols=134 Identities=19% Similarity=0.306 Sum_probs=73.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE---EEEeCc------ccccc-----cc---CchHHHHHH---------
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINF---ISVKGP------ELLNM-----YL---GESERAVRQ--------- 65 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~---~~i~~~------~l~~~-----~~---~~~~~~~~~--------- 65 (541)
....+.+-|+|++|+||||+|+++++.+..++ +.++.. ..... +. ......+..
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~ 283 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI 283 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc
Confidence 44566788999999999999999988773321 122210 00000 00 000000111
Q ss_pred ----HHHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCC
Q psy7673 66 ----CFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRF 141 (541)
Q Consensus 66 ----~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~ 141 (541)
...+....++.+|+|||++.. ..+..+....+.. ..+-.||.||++.+.+ .....
T Consensus 284 ~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L~~~~~~~--~~GsrIIiTTrd~~vl-----~~~~~ 342 (1153)
T PLN03210 284 YHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDALAGQTQWF--GSGSRIIVITKDKHFL-----RAHGI 342 (1153)
T ss_pred CCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHHHhhCccC--CCCcEEEEEeCcHHHH-----HhcCC
Confidence 111222345578899998653 2233333322211 1234566677754322 21245
Q ss_pred CeEEEecCCCHHHHHHHHHHHHhcC
Q psy7673 142 DRILFVNLPNEQDRKEILLALTKQG 166 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~il~~~~~~~ 166 (541)
++.+.++.|+.++-.+++...+...
T Consensus 343 ~~~~~v~~l~~~ea~~LF~~~Af~~ 367 (1153)
T PLN03210 343 DHIYEVCLPSNELALEMFCRSAFKK 367 (1153)
T ss_pred CeEEEecCCCHHHHHHHHHHHhcCC
Confidence 6788999999999999998887653
No 372
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0013 Score=64.98 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----C-CcEEEEeCcc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA----G-INFISVKGPE 50 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~----~-~~~~~i~~~~ 50 (541)
..+..++|.||+|+||||++..++..+ + ..+..+.+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 456789999999999999999999764 3 3555565544
No 373
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.43 E-value=0.00074 Score=57.76 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=45.3
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEeCcccccccc-CchHHHHHHHHHHHHhcCCceEEEcCCcc
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGI--NFISVKGPELLNMYL-GESERAVRQCFQRARNSQPCVIFFDEIDA 85 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~--~~~~i~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~il~iDe~d~ 85 (541)
|...++..+.|.|++|+||||+++.++..... --+.++......-.. -.....-+-.+..+-..+|.++++||-..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 35667788999999999999999999986621 112222110000000 01112223334555567889999999754
No 374
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.43 E-value=0.0013 Score=61.16 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=32.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPE 50 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~ 50 (541)
|.+++..++|.|+||+|||+++..++.+. +.++++++..+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 56677789999999999999999887543 67788887643
No 375
>PRK00625 shikimate kinase; Provisional
Probab=97.43 E-value=0.00015 Score=63.83 Aligned_cols=31 Identities=35% Similarity=0.644 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
+|+|+|.||+||||+++.+++.++++++.+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 6899999999999999999999999887665
No 376
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.42 E-value=0.00066 Score=66.46 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=32.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCcc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPE 50 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~ 50 (541)
|.+.+..++|+||||+|||+++..+|... +..+++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 35666678899999999999999998763 34789998765
No 377
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00014 Score=62.71 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
..+++|+|++|+||||+.+++|+.++++|+-.|
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 467999999999999999999999999998665
No 378
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.39 E-value=0.0017 Score=60.61 Aligned_cols=38 Identities=32% Similarity=0.373 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKG 48 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~ 48 (541)
|..++..++|.|+||+|||+++..++.+. +..+++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 57778889999999999999999876533 556666664
No 379
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.38 E-value=0.0064 Score=60.30 Aligned_cols=195 Identities=17% Similarity=0.121 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEE-EEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhhhcCCCC
Q psy7673 302 LQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVK-VTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNLLSSIEH 379 (541)
Q Consensus 302 ~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~-v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~~~~~ 379 (541)
-..+...|++.+ ..|++++.+++|+.|...+++|. |.+.+| .+.||.||+|+-++.- .+.+ ...
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~-~l~~------------~~~ 201 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG-ELLP------------LPL 201 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh-hccc------------CCc
Confidence 367777887777 56889999999999998777664 676667 7899999999887753 3432 111
Q ss_pred ccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecc--cccCCCcEEEEEEecCccCCcccCCCCHHHHHHHHHHH
Q psy7673 380 VNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSC--CFEQADWTILTVMMGGAWYDTYFKGQSKEYILDIACRY 457 (541)
Q Consensus 380 ~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~--~~~~~~~~~l~~~~~g~~~~~~~~~~~~e~~~~~~~~~ 457 (541)
.++-...+.++.+..+... .++..++++.. ..+..++..+. |+.......+...+++.++.+.+.
T Consensus 202 ~~~~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~y~~p~~~g~~~i---G~~~~~~~~~~~~~~~~~~~l~~~ 268 (337)
T TIGR02352 202 RPVRGQPLRLEAPAVPLLN----------RPLRAVVYGRRVYIVPRRDGRLVV---GATMEESGFDTTPTLGGIKELLRD 268 (337)
T ss_pred cccCceEEEeeccccccCC----------cccceEEEcCCEEEEEcCCCeEEE---EEeccccCccCCCCHHHHHHHHHH
Confidence 2222222223211100000 00000111111 11222222222 221111111112345667778888
Q ss_pred HHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHHHHHHh
Q psy7673 458 VHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAVESIK 532 (541)
Q Consensus 458 l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~aa~~i~ 532 (541)
+.++++.-... .....|-...| +++.+...+... ...+|+|+++.+ .|.|+--+-..|+.+|+.|+
T Consensus 269 ~~~~~P~l~~~--~~~~~~~g~r~-~t~D~~piig~~-----~~~~~~~~~~g~-~g~G~~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 269 AYTILPALKEA--RLLETWAGLRP-GTPDNLPYIGEH-----PEDRRLLIATGH-YRNGILLAPATAEVIADLIL 334 (337)
T ss_pred HHHhCCCcccC--cHHHheecCCC-CCCCCCCEeCcc-----CCCCCEEEEccc-ccCceehhhHHHHHHHHHHh
Confidence 88888532221 12455655444 233322111111 113589888544 45678888999999999884
No 380
>KOG0481|consensus
Probab=97.37 E-value=0.0019 Score=64.16 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=73.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcc----ccccccCchHHHHHHHHH---HHHhcCCceEEEcCCcccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPE----LLNMYLGESERAVRQCFQ---RARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~----l~~~~~~~~~~~~~~~~~---~~~~~~~~il~iDe~d~l~ 87 (541)
--++||-|.|||-||-+++-+-+-...-++.-...+ |.......... +...- .......+|+.|||+|++-
T Consensus 364 DINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~t--ReFylEGGAMVLADgGVvCIDEFDKMr 441 (729)
T KOG0481|consen 364 DINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPST--REFYLEGGAMVLADGGVVCIDEFDKMR 441 (729)
T ss_pred ceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCc--ceEEEecceEEEecCCEEEeehhhccC
Confidence 347999999999999999988776655444322111 11000000000 00000 0011244799999999985
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----------C--CCccccCCCCCCeEEEecCC-CHH
Q psy7673 88 PKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----------I--IDPAVMRPGRFDRILFVNLP-NEQ 153 (541)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----------~--l~~~l~~~~r~~~~i~~~~p-~~~ 153 (541)
.+..-.-.+....+.++--..-+.. .-+++..|+|++|+.. . +-+.+++ ||+.++-++.- +++
T Consensus 442 e~DRVAIHEAMEQQTISIAKAGITT-~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~ 518 (729)
T KOG0481|consen 442 EDDRVAIHEAMEQQTISIAKAGITT-TLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEE 518 (729)
T ss_pred chhhhHHHHHHHhhhHHHhhhccee-eecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEeccCcch
Confidence 4422110011111111111111111 1134568888888542 2 3378888 99988777744 333
Q ss_pred HHHHHHHHHHhc
Q psy7673 154 DRKEILLALTKQ 165 (541)
Q Consensus 154 ~r~~il~~~~~~ 165 (541)
.-..|.++.+.-
T Consensus 519 ~D~~lAkHVI~v 530 (729)
T KOG0481|consen 519 RDITLAKHVINV 530 (729)
T ss_pred hhhHHHHHhhhh
Confidence 445555555543
No 381
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.37 E-value=0.0011 Score=58.90 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
....+--+.|+||||+||||++|++-.
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 355667799999999999999999964
No 382
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.37 E-value=0.0016 Score=59.29 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
....+--+.|.||+|||||||...++.-.
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45666779999999999999999998533
No 383
>PTZ00035 Rad51 protein; Provisional
Probab=97.37 E-value=0.00086 Score=65.86 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=64.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCcccccc---------c-------------c--C
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLNM---------Y-------------L--G 57 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~~---------~-------------~--~ 57 (541)
|...+.-+.|+|++|+|||+++..++... +..+++++...-+.. + . .
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 45566678899999999999999987432 346778886542110 0 0 0
Q ss_pred chH---HHHHHHHHHHHhcCCceEEEcCCccccCCCCCCC-CCChhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy7673 58 ESE---RAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLG-DNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN 126 (541)
Q Consensus 58 ~~~---~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~ 126 (541)
..+ ..+..+........+.+|+||-+-.++...-... ......+.+..++..|..+....++.|+.|..
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNq 266 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQ 266 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecc
Confidence 011 1122222222345678999999988765422111 11111233444555554444455667776654
No 384
>PRK13948 shikimate kinase; Provisional
Probab=97.36 E-value=0.00023 Score=63.16 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
.++.+|+|.|.+|+||||+.+.+++.++.+++..|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 57789999999999999999999999999988544
No 385
>KOG2170|consensus
Probab=97.36 E-value=0.00094 Score=62.11 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=44.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CC--cEEE--EeCcccccc-cc-CchHHHHHHHHHHHHhcCCceEEEcCCc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GI--NFIS--VKGPELLNM-YL-GESERAVRQCFQRARNSQPCVIFFDEID 84 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~--~~~~--i~~~~l~~~-~~-~~~~~~~~~~~~~~~~~~~~il~iDe~d 84 (541)
.|..+=|+|++||||+++++.||+.+ |. +++. +-..++-.. +. ..-++....+...+..++.++.++||+|
T Consensus 109 KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~D 188 (344)
T KOG2170|consen 109 KPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVD 188 (344)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhh
Confidence 44456689999999999999999987 22 1111 000111000 01 1122334445555566777999999999
Q ss_pred ccc
Q psy7673 85 ALC 87 (541)
Q Consensus 85 ~l~ 87 (541)
++.
T Consensus 189 Kmp 191 (344)
T KOG2170|consen 189 KLP 191 (344)
T ss_pred hcC
Confidence 985
No 386
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.35 E-value=0.0022 Score=57.50 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=52.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH-----hCCcE--------------EEEeCccccccccCchHHHHHHHHHHHHh-cCCce
Q psy7673 18 VLLCGPPGCGKTLLAKAVANE-----AGINF--------------ISVKGPELLNMYLGESERAVRQCFQRARN-SQPCV 77 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~-----~~~~~--------------~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~i 77 (541)
++|+||.|+|||+++|.++.. .|..+ ..++..+-...........+.++...+.. ..|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 689999999999999999832 23211 11222222222222333333333222222 36899
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD 129 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~ 129 (541)
+++||...-... .....+...+++.+.. ..+..+|.+|+..+
T Consensus 82 lllDEp~~g~d~-------~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 82 VLLDELGRGTST-------YDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred EEEecCCCCCCH-------HHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 999998653211 1122333444444432 12346677777653
No 387
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.35 E-value=0.0077 Score=59.65 Aligned_cols=142 Identities=13% Similarity=0.215 Sum_probs=81.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHH--HHHHHHhCCcEEEEeCcccccc-----------------------------------
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLA--KAVANEAGINFISVKGPELLNM----------------------------------- 54 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~--~~~a~~~~~~~~~i~~~~l~~~----------------------------------- 54 (541)
-.+..-|++.||.|+||+.++ +++.. ..++.+|||..+...
T Consensus 14 e~~~TFIvV~GPrGSGK~elV~d~~L~~--r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~nSiss~IDLa~q 91 (431)
T PF10443_consen 14 ENPNTFIVVQGPRGSGKRELVMDHVLKD--RKNVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMNSISSFIDLAVQ 91 (431)
T ss_pred cCCCeEEEEECCCCCCccHHHHHHHHhC--CCCEEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence 455666889999999999999 44444 345899999765430
Q ss_pred --------ccCchHHHHHHHHHHH-----------Hh------------------cCCceEEEcCCccccCCCCCCCCCC
Q psy7673 55 --------YLGESERAVRQCFQRA-----------RN------------------SQPCVIFFDEIDALCPKRSSLGDNN 97 (541)
Q Consensus 55 --------~~~~~~~~~~~~~~~~-----------~~------------------~~~~il~iDe~d~l~~~~~~~~~~~ 97 (541)
+....+..+++++... +. ...-||+||++..-.. .+.
T Consensus 92 GltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k~~------~~~ 165 (431)
T PF10443_consen 92 GLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHKAE------END 165 (431)
T ss_pred hccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhccCc------ccc
Confidence 1112233444443322 10 0124999999865321 112
Q ss_pred hhHHHHHHHHHHhcCCCCCCCeEEEEecCCC---CCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcC
Q psy7673 98 SSMRIVNQLLTEMDGFEGRGGVFLMAATNRP---DIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQG 166 (541)
Q Consensus 98 ~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~---~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~ 166 (541)
.....+......+ ..+.--.||..|++. ..|..++-+ |.-+.|.+...+.+.-..++...+...
T Consensus 166 ~iy~~laeWAa~L---v~~nIAHVIFlT~dv~~~k~LskaLPn--~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 166 FIYDKLAEWAASL---VQNNIAHVIFLTDDVSYSKPLSKALPN--RVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hHHHHHHHHHHHH---HhcCccEEEEECCCCchhhhHHHhCCC--CceeEEeecCCCHHHHHHHHHHHhccc
Confidence 2222222222222 112222444444433 245666644 766889999999999888888888753
No 388
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.35 E-value=0.0017 Score=59.06 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=21.9
Q ss_pred CCCCC-cEEEEEcCCCCcHHHHHHHHH
Q psy7673 11 GKSTP-SGVLLCGPPGCGKTLLAKAVA 36 (541)
Q Consensus 11 ~~~~~-~~~ll~G~~G~GKT~l~~~~a 36 (541)
...++ +.++|+||.|+||||+++.++
T Consensus 23 ~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 23 QLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EECCCceEEEEECCCCCChHHHHHHHH
Confidence 34455 469999999999999999998
No 389
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.35 E-value=0.00034 Score=62.02 Aligned_cols=151 Identities=20% Similarity=0.242 Sum_probs=68.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCC
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDN 96 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~ 96 (541)
-++|+||+|||||.++-.+|++++.+++..|.-..+.+..-.+.+....-+ . .-.=++|||-..--+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el---~--~~~RiyL~~r~l~~G~------- 70 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSEL---K--GTRRIYLDDRPLSDGI------- 70 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGG---T--T-EEEES----GGG-S-------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHH---c--ccceeeeccccccCCC-------
Confidence 468999999999999999999999999999976655443211111111111 1 1123777764332111
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccC---CCCCC-eEEEecCCCHHHHHHHHHHHHhcCCCCCCC
Q psy7673 97 NSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMR---PGRFD-RILFVNLPNEQDRKEILLALTKQGKDPMMG 172 (541)
Q Consensus 97 ~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~---~~r~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~~~ 172 (541)
-...+..+.|+..+..+.....+++=+-+- ..+..-..+ ...|. ++..++.|+.+--..-.+...++...+...
T Consensus 71 i~a~ea~~~Li~~v~~~~~~~~~IlEGGSI--SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~ 148 (233)
T PF01745_consen 71 INAEEAHERLISEVNSYSAHGGLILEGGSI--SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSS 148 (233)
T ss_dssp --HHHHHHHHHHHHHTTTTSSEEEEEE--H--HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SS
T ss_pred cCHHHHHHHHHHHHHhccccCceEEeCchH--HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCC
Confidence 123455677778888777643333333322 122111111 01233 456677888877666666655553323223
Q ss_pred CCCCHHHHH
Q psy7673 173 EDVDFDKIA 181 (541)
Q Consensus 173 ~~~~~~~l~ 181 (541)
...-+++++
T Consensus 149 ~~Sll~EL~ 157 (233)
T PF01745_consen 149 GPSLLEELV 157 (233)
T ss_dssp S--HHHHHH
T ss_pred CCcHHHHHH
Confidence 334455555
No 390
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.001 Score=57.88 Aligned_cols=77 Identities=25% Similarity=0.318 Sum_probs=46.5
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEeCccccc-------c---cc--CchHHHHHHHHHHHHhcCC
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGI--NFISVKGPELLN-------M---YL--GESERAVRQCFQRARNSQP 75 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~--~~~~i~~~~l~~-------~---~~--~~~~~~~~~~~~~~~~~~~ 75 (541)
+...++..+.|.|++|+|||++++.++..+.. --+.++..+... . +. -.....-+..+..+-..+|
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNP 99 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCC
Confidence 35667788999999999999999999986631 122333322110 0 00 0011222233444455678
Q ss_pred ceEEEcCCccc
Q psy7673 76 CVIFFDEIDAL 86 (541)
Q Consensus 76 ~il~iDe~d~l 86 (541)
.++++||...=
T Consensus 100 ~i~ilDEp~~~ 110 (157)
T cd00267 100 DLLLLDEPTSG 110 (157)
T ss_pred CEEEEeCCCcC
Confidence 99999997643
No 391
>PRK13947 shikimate kinase; Provisional
Probab=97.35 E-value=0.00021 Score=63.33 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
.+|+|.|+||||||++++.+|+.++++++..+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 36999999999999999999999999886544
No 392
>PRK13695 putative NTPase; Provisional
Probab=97.34 E-value=0.0027 Score=56.28 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.++|.|++|+||||+++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987765
No 393
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.34 E-value=0.0025 Score=55.40 Aligned_cols=29 Identities=34% Similarity=0.469 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...+..-++|.||||.||||++|.+..+.
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 45566678999999999999999998766
No 394
>PRK03839 putative kinase; Provisional
Probab=97.34 E-value=0.00019 Score=64.10 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
.|+|.|+||+||||+++.+|+.++++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999998876544
No 395
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.33 E-value=0.0081 Score=58.41 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=58.7
Q ss_pred HHHHHHHHHHh-c--CCceEEEcCCccccCCCCCC-----CCCChhHHHHHHHHHHhcCCCCCC-CeEE--EEecCC---
Q psy7673 62 AVRQCFQRARN-S--QPCVIFFDEIDALCPKRSSL-----GDNNSSMRIVNQLLTEMDGFEGRG-GVFL--MAATNR--- 127 (541)
Q Consensus 62 ~~~~~~~~~~~-~--~~~il~iDe~d~l~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~-~~~v--i~t~~~--- 127 (541)
.+..+++++.. . .|.++.||+++.++....-. .-....-.+...|++.+..-..-. +.+| ++++..
T Consensus 141 ~~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~ 220 (309)
T PF10236_consen 141 VFQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNA 220 (309)
T ss_pred HHHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccc
Confidence 35555666553 2 35677799999998774321 112223445566666644322212 2232 444332
Q ss_pred CC--CCCccccCCCC------CC-------------eEEEecCCCHHHHHHHHHHHHhcC
Q psy7673 128 PD--IIDPAVMRPGR------FD-------------RILFVNLPNEQDRKEILLALTKQG 166 (541)
Q Consensus 128 ~~--~l~~~l~~~~r------~~-------------~~i~~~~p~~~~r~~il~~~~~~~ 166 (541)
+. .++..+....- |. ..|+++..+.+|-..+++.+....
T Consensus 221 ~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 221 PKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred cCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCC
Confidence 12 34444442111 11 268999999999999999998864
No 396
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0027 Score=63.26 Aligned_cols=138 Identities=13% Similarity=0.120 Sum_probs=72.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeCccccc----------c------ccCchHHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA-------GINFISVKGPELLN----------M------YLGESERAVRQCFQR 69 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~-------~~~~~~i~~~~l~~----------~------~~~~~~~~~~~~~~~ 69 (541)
..+..++|+||+|+||||++..+|..+ +..+..+++..+.. + ........+...+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999998765 23444444433211 0 111222333343433
Q ss_pred HHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCC-CCeEEEEecCCCCCCCccccCCCCCC-eEEEe
Q psy7673 70 ARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGR-GGVFLMAATNRPDIIDPAVMRPGRFD-RILFV 147 (541)
Q Consensus 70 ~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~vi~t~~~~~~l~~~l~~~~r~~-~~i~~ 147 (541)
. ....+|+||.+..... ....+..+...++..... ..++|+.++.....+...+.+-..+. .-+-|
T Consensus 252 ~--~~~DlVLIDTaGr~~~----------~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPK----------DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIF 319 (388)
T ss_pred h--CCCCEEEEcCCCCCcc----------CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 3 3458999999987631 112244555555543323 23566666655555544333211111 23444
Q ss_pred cCCCHHHHHHHHHHH
Q psy7673 148 NLPNEQDRKEILLAL 162 (541)
Q Consensus 148 ~~p~~~~r~~il~~~ 162 (541)
.-.|+..+...+-..
T Consensus 320 TKlDet~~~G~~l~~ 334 (388)
T PRK12723 320 TKLDETTCVGNLISL 334 (388)
T ss_pred EeccCCCcchHHHHH
Confidence 555555555444333
No 397
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.32 E-value=0.0022 Score=64.92 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=47.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc---------------cc-----CchHHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM---------------YL-----GESERAVRQCFQR 69 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~---------------~~-----~~~~~~~~~~~~~ 69 (541)
.+|..++|+|++|+||||++..+|..+ +..+..++|..+... .. ......+...+..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 457789999999999999999999877 667777777543210 01 1112223344444
Q ss_pred HHhcCCceEEEcCCccc
Q psy7673 70 ARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 70 ~~~~~~~il~iDe~d~l 86 (541)
+... .+|+||....+
T Consensus 173 ~~~~--DvVIIDTAGr~ 187 (437)
T PRK00771 173 FKKA--DVIIVDTAGRH 187 (437)
T ss_pred hhcC--CEEEEECCCcc
Confidence 4333 79999998665
No 398
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00052 Score=60.71 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=26.6
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
|...++..+.|.||+|+||||+++.++...
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456788889999999999999999999876
No 399
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.31 E-value=0.012 Score=50.25 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=76.9
Q ss_pred EEcCCCCcHHHHHHHHHHHhC-CcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCCCh
Q psy7673 20 LCGPPGCGKTLLAKAVANEAG-INFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNS 98 (541)
Q Consensus 20 l~G~~G~GKT~l~~~~a~~~~-~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~ 98 (541)
=.+..||||||++.++++-++ +-. +.-.++.++ ...+.++.+++.+......+++.|-=+..
T Consensus 4 PIAtiGCGKTTva~aL~~LFg~wgH--vQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~------------ 66 (168)
T PF08303_consen 4 PIATIGCGKTTVALALSNLFGEWGH--VQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQ------------ 66 (168)
T ss_pred eecCCCcCHHHHHHHHHHHcCCCCc--cccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCch------------
Confidence 358999999999999999988 544 344444333 34455666677765455579999843322
Q ss_pred hHHHHHHHHHHhcCCC-----CCCCeEEEEecCCCCCCCcc--------ccCCCCCCeEEEecCCCHHHHHHHHHHHHhc
Q psy7673 99 SMRIVNQLLTEMDGFE-----GRGGVFLMAATNRPDIIDPA--------VMRPGRFDRILFVNLPNEQDRKEILLALTKQ 165 (541)
Q Consensus 99 ~~~~~~~l~~~l~~~~-----~~~~~~vi~t~~~~~~l~~~--------l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~ 165 (541)
.+.-..++..++... ...++.+||-.=..+.-.+. +...|-=...|.....+...-..|++.++..
T Consensus 67 -~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~r 145 (168)
T PF08303_consen 67 -KRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKR 145 (168)
T ss_pred -HHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHh
Confidence 222234444433322 23456677765433221122 2221112345777777788889999999987
Q ss_pred CC
Q psy7673 166 GK 167 (541)
Q Consensus 166 ~~ 167 (541)
+.
T Consensus 146 fe 147 (168)
T PF08303_consen 146 FE 147 (168)
T ss_pred cC
Confidence 64
No 400
>PHA02774 E1; Provisional
Probab=97.31 E-value=0.0013 Score=67.64 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=40.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE-EEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINF-ISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEI 83 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~-~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~ 83 (541)
+.+.-+.++|+||||||||+++.++++.++..+ ..+|..+-+ .+..+.. ..+++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~F-------------wLqpl~d--~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHF-------------WLQPLAD--AKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcccc-------------ccchhcc--CCEEEEecC
Confidence 444456899999999999999999999986544 446642211 0222222 259999998
No 401
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.31 E-value=0.00073 Score=60.34 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=26.2
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
|...++..+.|.||+|+||||+++.++...
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356678889999999999999999999865
No 402
>PRK06762 hypothetical protein; Provisional
Probab=97.31 E-value=0.00069 Score=59.66 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL 52 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~ 52 (541)
+.-++|+|+||+||||+++.+++.++..++.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 45688999999999999999999997667777765543
No 403
>PRK13949 shikimate kinase; Provisional
Probab=97.31 E-value=0.00023 Score=62.66 Aligned_cols=32 Identities=44% Similarity=0.724 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
+.|+|+|+||+|||++++.+|+.++++++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 46999999999999999999999998877655
No 404
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00066 Score=66.03 Aligned_cols=28 Identities=39% Similarity=0.555 Sum_probs=22.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
+.++--+-|-|||||||||+.|.||..-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344446799999999999999999744
No 405
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.29 E-value=0.00083 Score=65.40 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=64.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh------C---CcEEEEeCcccccc---------c---c------------C
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA------G---INFISVKGPELLNM---------Y---L------------G 57 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~------~---~~~~~i~~~~l~~~---------~---~------------~ 57 (541)
|..+..-+.++|+||+|||+++..++... + ..+++++..+-+.. + . .
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 45666778899999999999999987532 1 36788887652111 0 0 0
Q ss_pred chH---HHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCCCh-h-HHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 58 ESE---RAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNS-S-MRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 58 ~~~---~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~-~-~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
..+ ..+..+........+.+|+||-+-.++...... .... . ...+..++..|..+....++.|+.|.+-
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~-~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNqv 245 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSG-RGELSARQMHLARFLRSLQRLADEFGVAVVITNQV 245 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCC-cchHHHHHHHHHHHHHHHHHHHHHhCCEEEEECce
Confidence 011 112222222233467899999999886432211 1111 1 1223445555554444556677777553
No 406
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.29 E-value=0.00086 Score=65.70 Aligned_cols=117 Identities=14% Similarity=0.136 Sum_probs=66.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCccccc---------cc-------c--------C
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLN---------MY-------L--------G 57 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~---------~~-------~--------~ 57 (541)
|..+..-+.++|+||+|||+++..+|... +..+++++...-+. .+ . .
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 35666678899999999999999887432 23788998765211 00 0 0
Q ss_pred chHH---HHHHHHHHHHhcCCceEEEcCCccccCCCCCCC-CCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 58 ESER---AVRQCFQRARNSQPCVIFFDEIDALCPKRSSLG-DNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 58 ~~~~---~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
..+. .+..+........+.+|+||-+-.++...-... +.......+..++..|..+....++.||.|.+-
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv 272 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQV 272 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCE
Confidence 0111 122222223445679999999998865421111 111112234455555554444566777777654
No 407
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.003 Score=62.07 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=47.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccc-------c---------ccCchHHHHHHHHHHHHh-c
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLN-------M---------YLGESERAVRQCFQRARN-S 73 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~-------~---------~~~~~~~~~~~~~~~~~~-~ 73 (541)
.+..++|.||+|+||||++..+|..+ +..+..+++..... . ........+...+..+.. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 35789999999999999999999877 55666677643311 0 012233444455555443 2
Q ss_pred CCceEEEcCCccc
Q psy7673 74 QPCVIFFDEIDAL 86 (541)
Q Consensus 74 ~~~il~iDe~d~l 86 (541)
..++|+||-....
T Consensus 320 ~~DvVLIDTaGRs 332 (436)
T PRK11889 320 RVDYILIDTAGKN 332 (436)
T ss_pred CCCEEEEeCcccc
Confidence 4579999977654
No 408
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.28 E-value=0.015 Score=58.92 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcc--CCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhH
Q psy7673 302 LQTIVNTLGEHLS--NKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 302 ~~~l~~~l~~~l~--~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
...+.+.|.+.+. .|++++++++|++|..++++|+|++.+|.++.||.||.|...+.
T Consensus 104 r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 104 LADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred cHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 4567888888773 37899999999999988888999888888899999999998764
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.27 E-value=0.0012 Score=57.87 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
..++..+|+||.|+|||+++++++-.+
T Consensus 19 ~~~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 19 GEGSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 344688999999999999999986433
No 410
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.001 Score=66.99 Aligned_cols=223 Identities=14% Similarity=0.057 Sum_probs=132.8
Q ss_pred HHHHHHHHhc-cCCcEEeccceeeEEEEeC---C--cEEEEecCc--eeEeeCEEEEcCChhHHHhhhccc-C-chhHhh
Q psy7673 304 TIVNTLGEHL-SNKVEVKMDTTCTNLEFLE---K--GVKVTLNND--QHIEANHVVSALPAPKLGMLLHKQ-H-PTLGNL 373 (541)
Q Consensus 304 ~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~---~--~~~v~~~~g--~~~~ad~VI~t~P~~~~~~ll~~~-~-~~~~~~ 373 (541)
.+...+.+.+ +.|.+++...+|..|.... . .|.+...+. +...++.++.+...+.+.+.+|.. . .+-..-
T Consensus 216 ~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ 295 (485)
T COG3349 216 VLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDG 295 (485)
T ss_pred eeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCcccccccccccc
Confidence 3556777777 5788999999999998753 2 244443321 233556677777777777777543 2 233455
Q ss_pred hcCCCCccEEEEEEeeCCCCCCCCc----cEEEecCCCCCCceEEEeecccccC----C-CcEEEEEEecCccCCcccCC
Q psy7673 374 LSSIEHVNVAVINLAYENIPMKQNA----FGFLVPPREKLPILGVVFDSCCFEQ----A-DWTILTVMMGGAWYDTYFKG 444 (541)
Q Consensus 374 l~~~~~~~~~~v~l~~~~~~~~~~~----~g~l~~~~~~~~~~~~~~~s~~~~~----~-~~~~l~~~~~g~~~~~~~~~ 444 (541)
+..+...+++++.+.++...+.... ++...-.....+..++++++.+-.+ . ....+-...+. ...+..
T Consensus 296 ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~--~~~~~~- 372 (485)
T COG3349 296 LYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAP--GWPFLF- 372 (485)
T ss_pred cccccccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcc--cccccc-
Confidence 6677889999999999863322211 1111001223334455555432211 1 11122222211 122223
Q ss_pred CCHHHHHHHHHHHHHhHcCCC-CCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCC---CCChHHH
Q psy7673 445 QSKEYILDIACRYVHEILDMP-RTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYD---GVGVNDV 520 (541)
Q Consensus 445 ~~~e~~~~~~~~~l~~~~g~~-~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~---g~~v~~a 520 (541)
.+++++.....+.+...++.. .......+.+-..+...+.+|-...+.... ++.+|++++|||.. -.+||.|
T Consensus 373 ~~~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~~q~~~~~~pgs~~~rP~~~----Tpv~N~~laGd~~~~~~~~smE~A 448 (485)
T COG3349 373 ESDEAIVATFEKELYELVPSLAEAKLKSSVLVNQQSLYGLAPGSYHYRPEQK----TPIPNLLLAGDYTKQPYLGSMEGA 448 (485)
T ss_pred cchhhHHHHHHHHhhhcCCchhcccccccceeccccccccCCCccccCCCCC----CCccchhhccceeecCCcCccchh
Confidence 677889999988888655432 223445555555666667777554444432 45779999999993 3579999
Q ss_pred HHHHHHHHHHHhh
Q psy7673 521 IALSKKAVESIKW 533 (541)
Q Consensus 521 i~sg~~aa~~i~~ 533 (541)
..||+++|+.++.
T Consensus 449 ~~sGl~AA~~v~~ 461 (485)
T COG3349 449 TLSGLLAANAILD 461 (485)
T ss_pred hhhHHHHHHHHHH
Confidence 9999999999864
No 411
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.25 E-value=0.0062 Score=64.70 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=91.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh--CCcEEEEeCcccccc--------------c---cC-------------c
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA--GINFISVKGPELLNM--------------Y---LG-------------E 58 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~--~~~~~~i~~~~l~~~--------------~---~~-------------~ 58 (541)
.....+-++|+-|.|.||||++-..+... +..+..+++++--++ + .+ .
T Consensus 33 ~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~ 112 (894)
T COG2909 33 RANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVS 112 (894)
T ss_pred cCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhccccc
Confidence 45677789999999999999999998644 555666655432110 0 11 1
Q ss_pred hHHHHHHHHHHHH-hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccC
Q psy7673 59 SERAVRQCFQRAR-NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMR 137 (541)
Q Consensus 59 ~~~~~~~~~~~~~-~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~ 137 (541)
....+..+|.+.. ..+|..|||||.|.+. ++.....+..|++. .+.++.+|.+|...-.+.-+-.+
T Consensus 113 l~~l~~~L~~Ela~~~~pl~LVlDDyHli~--------~~~l~~~l~fLl~~-----~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 113 LESLLSSLLNELASYEGPLYLVLDDYHLIS--------DPALHEALRFLLKH-----APENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHHHHHHHHHHhhcCceEEEeccccccC--------cccHHHHHHHHHHh-----CCCCeEEEEEeccCCCCccccee
Confidence 2234555565554 4578899999999983 34445555666653 24567777777643322211111
Q ss_pred CCCCCeEEEec----CCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCC
Q psy7673 138 PGRFDRILFVN----LPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFS 190 (541)
Q Consensus 138 ~~r~~~~i~~~----~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 190 (541)
--+..+++. ..+.+|-.++++...... -+.-+.+.+- ..|+|+.
T Consensus 180 --lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-----Ld~~~~~~L~--~~teGW~ 227 (894)
T COG2909 180 --LRDELLEIGSEELRFDTEEAAAFLNDRGSLP-----LDAADLKALY--DRTEGWA 227 (894)
T ss_pred --ehhhHHhcChHhhcCChHHHHHHHHHcCCCC-----CChHHHHHHH--hhcccHH
Confidence 001122222 346677777776655321 1233455555 6777764
No 412
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.25 E-value=0.00029 Score=61.14 Aligned_cols=31 Identities=29% Similarity=0.614 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
+|+|+|+||+|||++++.+++.++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999998877444
No 413
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.25 E-value=0.00027 Score=62.86 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
++.++|+|+||+||||+++.+++.++..++.++...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 4578999999999999999999998877665554433
No 414
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.24 E-value=0.0043 Score=54.96 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPEL 51 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l 51 (541)
.+++.|++|+|||++++.++..+ +..+..+++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 36889999999999999998876 677888887643
No 415
>PRK06217 hypothetical protein; Validated
Probab=97.24 E-value=0.0003 Score=63.03 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
..|+|.|.||+||||+++.+++.++.+++..|
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 35899999999999999999999998876554
No 416
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00031 Score=59.09 Aligned_cols=28 Identities=36% Similarity=0.750 Sum_probs=25.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
+-+.|||||||||+++.+|+.+|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6688999999999999999999998874
No 417
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.23 E-value=0.00075 Score=66.81 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=45.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeC-cccc--------c-cccCchHHHHHHHHHHHHhcCCceEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAG----INFISVKG-PELL--------N-MYLGESERAVRQCFQRARNSQPCVIF 79 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~----~~~~~i~~-~~l~--------~-~~~~~~~~~~~~~~~~~~~~~~~il~ 79 (541)
+...++|+||+|+||||+++++...+. .+++.+.- .++. . ...+.....+...+..+....|++|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 455789999999999999999988763 33443321 1111 0 01122122345556666778999999
Q ss_pred EcCCc
Q psy7673 80 FDEID 84 (541)
Q Consensus 80 iDe~d 84 (541)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99984
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.21 E-value=0.0039 Score=56.68 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
....+.-++|.||+|+|||++++.++.
T Consensus 25 ~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 25 TRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred eeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444557799999999999999999974
No 419
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.00026 Score=60.47 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
.++++|.||+||||+++.++ +++..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 57899999999999999999 9999887665
No 420
>PRK04040 adenylate kinase; Provisional
Probab=97.21 E-value=0.0025 Score=57.15 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
+..++|+|+||+||||+++.+++.++..+..++..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 5678999999999999999999999422333454443
No 421
>PRK14532 adenylate kinase; Provisional
Probab=97.21 E-value=0.00034 Score=63.01 Aligned_cols=35 Identities=31% Similarity=0.581 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN 53 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~ 53 (541)
+++|.|+||+||||+++.+|+.+++.+ +++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHH
Confidence 589999999999999999999998655 56555543
No 422
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.20 E-value=0.00032 Score=49.62 Aligned_cols=36 Identities=39% Similarity=0.666 Sum_probs=32.7
Q ss_pred ccccCHHHHHHHHHhcCCCCChhhhhhhHHHhhhhc
Q psy7673 226 QVTIGFRHFDIALKRIKPSVSKADCKNYESLKQRYT 261 (541)
Q Consensus 226 ~~~i~~~d~~~al~~~~~~~s~~~~~~~e~~~~~~~ 261 (541)
..+|+.+||.+||++++|+++.++++.|++|.+.||
T Consensus 27 ~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 27 EPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 347999999999999999999999999999999986
No 423
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.20 E-value=0.0014 Score=60.84 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=25.7
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
|..+.+.-+-|.||.||||||+.|+++..+
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 355667778899999999999999999866
No 424
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.19 E-value=0.0071 Score=60.33 Aligned_cols=183 Identities=14% Similarity=0.097 Sum_probs=108.2
Q ss_pred cccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhhh
Q psy7673 295 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNLL 374 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l 374 (541)
.+-+++|...+.++|++.- +.+|++|+.+..++..+++|.+.. + .+. +.||.|.|++.+-. ...
T Consensus 190 q~~P~~Gyt~~~~~ml~~~--~i~v~l~~~~~~~~~~~~~~~~~~--~-~~~-~~vi~Tg~id~~f~----------~~~ 253 (377)
T TIGR00031 190 QGLPKGGYTKLFEKMLDHP--LIDVKLNCHINLLKDKDSQLHFAN--K-AIR-KPVIYTGLIDQLFG----------YRF 253 (377)
T ss_pred cccccccHHHHHHHHHhcC--CCEEEeCCccceeeccccceeecc--c-ccc-CcEEEecCchHHHh----------hcc
Confidence 3456889999999999772 348999998888876555565542 2 233 88999999986554 345
Q ss_pred cCCCCccEEEEEEee-CCCCCCCCccEEEecCCCCCCceEEEeecccccCC-CcEEEEEEecCccCCcccCCCCHHHHHH
Q psy7673 375 SSIEHVNVAVINLAY-ENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQA-DWTILTVMMGGAWYDTYFKGQSKEYILD 452 (541)
Q Consensus 375 ~~~~~~~~~~v~l~~-~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~-~~~~l~~~~~g~~~~~~~~~~~~e~~~~ 452 (541)
.+++|.+.-. .+.+ +.... ++..++.-+ ++.+...++...+.-+.. +.+++
T Consensus 254 g~L~yrsl~f-~~e~~~~~~~--q~~~~vnyp-~~~~~tRI~e~k~f~~~~~~~t~i----------------------- 306 (377)
T TIGR00031 254 GALQYRSLKF-EWERHEFKNF--QGYAVVNFP-LNVPITRIVEYKHLTYVGSKQTIV----------------------- 306 (377)
T ss_pred CcccceeEEE-EEEEeccccC--CCCeEEEcC-CCCCcceEEeeecCCCCCCCCeEE-----------------------
Confidence 6677777665 3333 22211 222232222 333333333332211110 00000
Q ss_pred HHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCC--CCCChHHHHHHHHHHHHH
Q psy7673 453 IACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSY--DGVGVNDVIALSKKAVES 530 (541)
Q Consensus 453 ~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~--~g~~v~~ai~sg~~aa~~ 530 (541)
....|.......+..++|.++...........+ +....++++++|-.- ..-.|+.||.+|..++++
T Consensus 307 -----------~~E~~~~~~~~~~~pyYpi~~~~~~~~~~~y~~-la~~~~~v~~~GRlg~y~Y~nMD~~i~~al~~~~~ 374 (377)
T TIGR00031 307 -----------SKEYPGEWKVGDPEPYYPVNDNKNMALFKKYLE-LASREDNLILLGRLAEYQYYDMDQAILAALYKAEQ 374 (377)
T ss_pred -----------EeecchhhcCCCceeeeeccCHHHHHHHHHHHH-HHhcCCCEEEeeeeeEeEeecHHHHHHHHHHHHHH
Confidence 001122222223345677778777777777766 444446999999665 356899999999999998
Q ss_pred Hh
Q psy7673 531 IK 532 (541)
Q Consensus 531 i~ 532 (541)
++
T Consensus 375 ~~ 376 (377)
T TIGR00031 375 LL 376 (377)
T ss_pred hh
Confidence 73
No 425
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.19 E-value=0.0044 Score=53.31 Aligned_cols=30 Identities=30% Similarity=0.195 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCcEEEE
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA---GINFISV 46 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i 46 (541)
-+.+|+++|.|||+++-.+|-+. |.++..+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 36788999999999999887766 5555553
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.19 E-value=0.0028 Score=58.30 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
.......++|.||+|+|||++.+.++.
T Consensus 27 ~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 27 SAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345567789999999999999999987
No 427
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.19 E-value=0.0025 Score=66.23 Aligned_cols=78 Identities=24% Similarity=0.201 Sum_probs=56.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc--------------c--------------cCch
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM--------------Y--------------LGES 59 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~--------------~--------------~~~~ 59 (541)
|..++..+||.||||+|||+++-.++.+. +-+++++...+-... + ....
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56777789999999999999999998765 557777765432110 0 0012
Q ss_pred HHHHHHHHHHHHhcCCceEEEcCCccccC
Q psy7673 60 ERAVRQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 60 ~~~~~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
+..+..+.......+|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 45566777777777899999999998753
No 428
>PRK06547 hypothetical protein; Provisional
Probab=97.19 E-value=0.00044 Score=60.90 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=30.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
..++.-|+|.|++|+|||++++.+++.++..++..+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 456778889999999999999999999887766443
No 429
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.19 E-value=0.0026 Score=56.69 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=26.4
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
|...++..+.|.||+|+||||+++.++...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356778889999999999999999999865
No 430
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.18 E-value=0.00084 Score=64.86 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=47.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCc-ccc-------ccccCchHHHHHHHHHHHHhcCCceEEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGP-ELL-------NMYLGESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~-~l~-------~~~~~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
...+++++|++|+||||+++++...+ +.+++.+.-. ++. .-........+..++..+.+..|+.|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 45789999999999999999999886 2344443211 111 0001111115667777778889999999
Q ss_pred cCCc
Q psy7673 81 DEID 84 (541)
Q Consensus 81 De~d 84 (541)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9984
No 431
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.18 E-value=0.0009 Score=60.19 Aligned_cols=25 Identities=48% Similarity=0.599 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
..-+.+.||.|||||+++-+.|.++
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3468899999999999999998766
No 432
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.18 E-value=0.00091 Score=60.51 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=44.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-------------CCcEEEEeCcccccc-----------c-------c-C----
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA-------------GINFISVKGPELLNM-----------Y-------L-G---- 57 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~-------------~~~~~~i~~~~l~~~-----------~-------~-~---- 57 (541)
...-.+|.|++|+|||+++..++..+ +.+++++++..-... + + .
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccc
Confidence 45568999999999999999998755 247888876432110 0 0 0
Q ss_pred -------------chHHHHHHHHHHHHh-cCCceEEEcCCccccCC
Q psy7673 58 -------------ESERAVRQCFQRARN-SQPCVIFFDEIDALCPK 89 (541)
Q Consensus 58 -------------~~~~~~~~~~~~~~~-~~~~il~iDe~d~l~~~ 89 (541)
.....+..+...+.. ..+.+|+||.+..+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 011223445555555 56899999999999876
No 433
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.17 E-value=0.002 Score=54.33 Aligned_cols=24 Identities=46% Similarity=0.524 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.+++++||+|+|||+++..++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999998887766
No 434
>PRK13764 ATPase; Provisional
Probab=97.17 E-value=0.00097 Score=69.79 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=43.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEe-Cccc-----cccccCchHHHHHHHHHHHHhcCCceEEEcCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG---INFISVK-GPEL-----LNMYLGESERAVRQCFQRARNSQPCVIFFDEI 83 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~-~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~ 83 (541)
....++|++||+|+||||++++++..++ ..+..+. ..++ ...+.. ....+......+....|+++++||+
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEi 333 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEM 333 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCC
Confidence 3467899999999999999999998873 3332331 1111 122210 0011122223334678999999998
Q ss_pred cc
Q psy7673 84 DA 85 (541)
Q Consensus 84 d~ 85 (541)
-.
T Consensus 334 Rd 335 (602)
T PRK13764 334 RK 335 (602)
T ss_pred CC
Confidence 53
No 435
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00094 Score=58.57 Aligned_cols=23 Identities=48% Similarity=0.707 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
=++|+|+||+|||++++-+++.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 37899999999999999999988
No 436
>KOG0058|consensus
Probab=97.17 E-value=0.0016 Score=67.98 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=27.1
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
|..+|+..+-|.||+|+||||++..+-+.+
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999999999998866
No 437
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.17 E-value=0.0011 Score=62.89 Aligned_cols=68 Identities=24% Similarity=0.437 Sum_probs=37.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccc---cc-cCchHHH----HHHHHHHHHhcCCceEEEcCCccc
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLN---MY-LGESERA----VRQCFQRARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~---~~-~~~~~~~----~~~~~~~~~~~~~~il~iDe~d~l 86 (541)
|+|+|-||+|||++++.|...+ +..++.++-..+.- .| ....++. +...+..+.. ...||++|+..++
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeCCchH
Confidence 7899999999999999999876 67788887544431 12 1222333 3334444333 3379999998776
No 438
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.16 E-value=0.00038 Score=62.43 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN 53 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~ 53 (541)
++|.|+||+||||+++.+++.++. ..++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHH
Confidence 689999999999999999999985 5556655543
No 439
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0012 Score=61.03 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++.-+-|.||.|+||||++|++...+
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566678899999999999999998744
No 440
>PRK14531 adenylate kinase; Provisional
Probab=97.16 E-value=0.00049 Score=61.62 Aligned_cols=35 Identities=31% Similarity=0.603 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL 52 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~ 52 (541)
..++++|+||+||||+++.+|+.++..++ ++.+++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHH
Confidence 46999999999999999999999987654 555554
No 441
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.16 E-value=0.00087 Score=63.28 Aligned_cols=121 Identities=21% Similarity=0.202 Sum_probs=69.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCccccc---------cc------------------
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLN---------MY------------------ 55 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~---------~~------------------ 55 (541)
.+...-.=|+|+||+|||.++..+|-.. +..++++|...-+. .+
T Consensus 35 i~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 35 IPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCC
Confidence 3334444599999999999999998654 45699999754221 00
Q ss_pred cCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCC-CCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q psy7673 56 LGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLG-DNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIID 132 (541)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~ 132 (541)
..+....+..+.......+..+|+||-+-.++...-... +.......+..++..|..+....++.||.|.+-...++
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 001111222222223344568999999998875432211 11122355666666666665667778887766444444
No 442
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.0018 Score=60.53 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.++.+.-+-|.||+|+||||+.|.||.-.
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence 45556668899999999999999999744
No 443
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.0012 Score=58.53 Aligned_cols=29 Identities=31% Similarity=0.276 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46677789999999999999999998865
No 444
>PRK14530 adenylate kinase; Provisional
Probab=97.14 E-value=0.00051 Score=63.30 Aligned_cols=30 Identities=33% Similarity=0.654 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
..|+|.|+||+||||+++.+++.++++++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 468999999999999999999999876553
No 445
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.14 E-value=0.00069 Score=63.06 Aligned_cols=73 Identities=25% Similarity=0.478 Sum_probs=49.4
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHHHHhC----CcEEEEe---------Cccccc-cccCchHHHHHHHHHHHHhcCCceE
Q psy7673 14 TPSG-VLLCGPPGCGKTLLAKAVANEAG----INFISVK---------GPELLN-MYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 14 ~~~~-~ll~G~~G~GKT~l~~~~a~~~~----~~~~~i~---------~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
.++| ||++||.||||||.+-++-..++ .+++.+. ...++. .-.|.....+...+..+.+..|+||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 3444 77889999999999999888773 3444432 222222 1245555556667777778899999
Q ss_pred EEcCCccc
Q psy7673 79 FFDEIDAL 86 (541)
Q Consensus 79 ~iDe~d~l 86 (541)
++-|+-.+
T Consensus 203 lvGEmRD~ 210 (353)
T COG2805 203 LVGEMRDL 210 (353)
T ss_pred EEeccccH
Confidence 99998543
No 446
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.13 E-value=0.0042 Score=54.57 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=26.4
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
|...++..+.|.||+|+||||+++.++..+
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356678889999999999999999999875
No 447
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.0021 Score=55.15 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=36.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELL 52 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~ 52 (541)
....+..+.|+|.||+||||++.++.+.+ |.+++.+|...+.
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 34667789999999999999999999887 8999999987653
No 448
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.12 E-value=0.00058 Score=63.08 Aligned_cols=38 Identities=26% Similarity=0.538 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN 53 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~ 53 (541)
.+..++|.||||+||||+++.+|+.++++++ +..+++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~i--s~gdllr 42 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHI--NMGNILR 42 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEE--ECChHHH
Confidence 3456999999999999999999999987555 5555543
No 449
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.12 E-value=0.14 Score=52.37 Aligned_cols=194 Identities=11% Similarity=0.032 Sum_probs=106.9
Q ss_pred ccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc--EEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHh
Q psy7673 296 WSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG--VKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGN 372 (541)
Q Consensus 296 ~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~ 372 (541)
....+|++.|+++|++.+ ..|+.++++++|++|..++++ +.|++.+|+++.|++||+.. ... |+ .
T Consensus 225 ~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~-s~~-----p~---~--- 292 (443)
T PTZ00363 225 IYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDP-SYF-----PD---K--- 292 (443)
T ss_pred eeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECc-ccc-----cc---c---
Confidence 455899999999999877 457899999999999887544 67888899889999999853 322 11 1
Q ss_pred hhcCCCCccEEEEEEeeCCCCCC---CCccEEEecCCC---CCCceEEEeecccc-cCCCcEEEEEEecCccCCcccCCC
Q psy7673 373 LLSSIEHVNVAVINLAYENIPMK---QNAFGFLVPPRE---KLPILGVVFDSCCF-EQADWTILTVMMGGAWYDTYFKGQ 445 (541)
Q Consensus 373 ~l~~~~~~~~~~v~l~~~~~~~~---~~~~g~l~~~~~---~~~~~~~~~~s~~~-~~~~~~~l~~~~~g~~~~~~~~~~ 445 (541)
.. ....+......++++... ....-.++|..+ .+++.-+...+..- -+.|..++.+... .. ..
T Consensus 293 -~~--~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~~~~i~v~~~s~~~~~cp~g~~i~~~st~---~~----t~ 362 (443)
T PTZ00363 293 -VK--KVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGRKNDIYIMLVSSNHGVCPKGKYIAIISTT---VE----TN 362 (443)
T ss_pred -cc--cccEEEEEEEEEcccccccCcCccEEEEECCcccCCCCCEEEEEecCCCCcCCCCcEEEEEEEe---cC----CC
Confidence 00 244455555555553211 122334555432 22333232322211 1234433333331 11 12
Q ss_pred CHHHHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHH
Q psy7673 446 SKEYILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSK 525 (541)
Q Consensus 446 ~~e~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~ 525 (541)
+++.-++-+++.|-. .......|.. .|.+-. .....++|++=.+=....-|.++..++
T Consensus 363 ~~~~~l~~~~~~l~~--------~~~~~~~~~~---~~~~~~-----------~~~~~~~~~~~~~d~~~~~e~~~~~~~ 420 (443)
T PTZ00363 363 NPEKEIEPALKLLGP--------IEEKFVSISD---LYEPTE-----------DGKKDNIFISKSYDATSHFESATEDVL 420 (443)
T ss_pred CHHHHHHHHHHHhcc--------chheEEeccc---cccccc-----------cCCCCCEEEeCCCCccccHHHHHHHHH
Confidence 345555555544431 1222334432 122211 012358988865444556788888888
Q ss_pred HHHHHHhh
Q psy7673 526 KAVESIKW 533 (541)
Q Consensus 526 ~aa~~i~~ 533 (541)
..=++|-.
T Consensus 421 ~~~~~~~~ 428 (443)
T PTZ00363 421 DLYKRITG 428 (443)
T ss_pred HHHHHhhC
Confidence 77777643
No 450
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.11 E-value=0.016 Score=58.91 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=45.9
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhH
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
..+.+.|.+.+ ..|++++++++|+++..++++|.|++.+|+++.+|.||.|.-...
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 45666777666 457899999999999998888999888888899999999986543
No 451
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0014 Score=60.55 Aligned_cols=106 Identities=21% Similarity=0.264 Sum_probs=61.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeCccc-------------------------cccccCchH--
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAG---INFISVKGPEL-------------------------LNMYLGESE-- 60 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~~~~l-------------------------~~~~~~~~~-- 60 (541)
....+..+-|.|++||||||++|.+..-.. .. +.++..++ ..+|..+.+
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~-i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCce-EEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 456677889999999999999999987652 11 22222111 112222222
Q ss_pred HHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy7673 61 RAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP 128 (541)
Q Consensus 61 ~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~ 128 (541)
+.-+-.+..+..-+|.+++.||.-+.+.. + +....++.+.++....++..+..+++.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDv-------S----iqaqIlnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDV-------S----VQAQILNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcch-------h----HHHHHHHHHHHHHHHhCCeEEEEEEEH
Confidence 22333455556678999999998776422 2 222333333333344456666666654
No 452
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.10 E-value=0.12 Score=49.88 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEec-CceeEeeCEEEEcCChhH
Q psy7673 304 TIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLN-NDQHIEANHVVSALPAPK 358 (541)
Q Consensus 304 ~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~-~g~~~~ad~VI~t~P~~~ 358 (541)
.+.+.|.+.+ +.|+++++++.|.++..+++++.+... ++.++++|.||.|.....
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 3445555555 457899999999999988887776543 345789999999987653
No 453
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0026 Score=57.68 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++-.+=|.|++||||||++|+++.-.
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45667778899999999999999998643
No 454
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.09 E-value=0.027 Score=55.92 Aligned_cols=63 Identities=33% Similarity=0.383 Sum_probs=47.8
Q ss_pred cccccccHHHHHHHHHHhccCCcEEeccceeeEE-EEeCCc---EEEEecC--c-eeEeeCEEEEcCChhHHH
Q psy7673 295 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNL-EFLEKG---VKVTLNN--D-QHIEANHVVSALPAPKLG 360 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I-~~~~~~---~~v~~~~--g-~~~~ad~VI~t~P~~~~~ 360 (541)
.|.+.||-.++.+.|.+.- +++| ++++|++| ...+++ +.|++.+ + ....+|+||+|+|.....
T Consensus 120 l~sV~GGN~qI~~~ll~~S--~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 120 LWSVEGGNWQIFEGLLEAS--GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred ceEecCCHHHHHHHHHHHc--cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 5999999999999999874 5678 99999999 444443 4665543 2 234689999999996544
No 455
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.08 E-value=0.008 Score=60.47 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=49.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccc---------------ccc-----CchHHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLN---------------MYL-----GESERAVRQCFQR 69 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~---------------~~~-----~~~~~~~~~~~~~ 69 (541)
.++..++|+|++|+||||++..+|..+ +..+..++|..+.. .+. ..........+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 456789999999999999999999877 67788888754321 001 0112223334555
Q ss_pred HHhcCCceEEEcCCccc
Q psy7673 70 ARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 70 ~~~~~~~il~iDe~d~l 86 (541)
++.....+|+||=...+
T Consensus 178 ~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHhCCCCEEEEECCCCC
Confidence 55555689999977654
No 456
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.08 E-value=0.00054 Score=59.19 Aligned_cols=32 Identities=38% Similarity=0.718 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
++|+|+||+||||+++.+++.++..++ +...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence 689999999999999999999876544 54444
No 457
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.08 E-value=0.0048 Score=54.69 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45677789999999999999999999865
No 458
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.07 E-value=0.001 Score=65.12 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=49.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEe-Cccccc-----------cc--cCchHHHHHHHHHHHHhcCCc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG--INFISVK-GPELLN-----------MY--LGESERAVRQCFQRARNSQPC 76 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~--~~~~~i~-~~~l~~-----------~~--~~~~~~~~~~~~~~~~~~~~~ 76 (541)
....+++++|++|+||||+++++...++ .+++.+. ..++.- .. .+.....+..++..+.+..|+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 3567899999999999999999998884 3344331 111210 00 111122456777888889999
Q ss_pred eEEEcCCcc
Q psy7673 77 VIFFDEIDA 85 (541)
Q Consensus 77 il~iDe~d~ 85 (541)
.|++.|+-.
T Consensus 238 ~IivGEiR~ 246 (332)
T PRK13900 238 RIIVGELRG 246 (332)
T ss_pred eEEEEecCC
Confidence 999999853
No 459
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.07 E-value=0.047 Score=55.67 Aligned_cols=55 Identities=27% Similarity=0.410 Sum_probs=45.9
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChh
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAP 357 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 357 (541)
..+.+.|.+.+ ..|++|+++++|+.|..++++|.|++.+|..+.+|.||.|.-..
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCC
Confidence 46677777766 45789999999999999888899988888889999999998654
No 460
>PRK08233 hypothetical protein; Provisional
Probab=97.06 E-value=0.0028 Score=56.64 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC-CcEEEEeCc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAG-INFISVKGP 49 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~-~~~~~i~~~ 49 (541)
.-|.|.|+||+||||+++.++..++ ..++..+..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 4577889999999999999999985 455555543
No 461
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.0041 Score=58.73 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=71.5
Q ss_pred hcCCCCCcEEE--EEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcc-ccccc----------------cCchHHHHHHH
Q psy7673 9 LFGKSTPSGVL--LCGPPGCGKTLLAKAVANEA---GINFISVKGPE-LLNMY----------------LGESERAVRQC 66 (541)
Q Consensus 9 ~~~~~~~~~~l--l~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~-l~~~~----------------~~~~~~~~~~~ 66 (541)
++|+..+++.+ ||||.|+|||+++..++... +-..+++|... |...+ ....+..+..+
T Consensus 52 ~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~ 131 (279)
T COG0468 52 ALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIA 131 (279)
T ss_pred HhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHH
Confidence 45666666644 89999999999999987655 55788888654 21111 01111121111
Q ss_pred HHHHHhc--CCceEEEcCCccccCCCCCCC-CCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q psy7673 67 FQRARNS--QPCVIFFDEIDALCPKRSSLG-DNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI 130 (541)
Q Consensus 67 ~~~~~~~--~~~il~iDe~d~l~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~ 130 (541)
-...... ..++|++|-+-.+.+...... ......+.++..+..+..+....+..||.+.+-..+
T Consensus 132 ~~~~~~~~~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k 198 (279)
T COG0468 132 EKLARSGAEKIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAK 198 (279)
T ss_pred HHHHHhccCCCCEEEEecCcccchhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeee
Confidence 1111222 368999999988887653321 122234555555666665555667788887664333
No 462
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.06 E-value=0.0015 Score=64.74 Aligned_cols=72 Identities=22% Similarity=0.382 Sum_probs=46.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCc-ccc--c---------cccCchHHHHHHHHHHHHhcCCc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGP-ELL--N---------MYLGESERAVRQCFQRARNSQPC 76 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~-~l~--~---------~~~~~~~~~~~~~~~~~~~~~~~ 76 (541)
....+|++||+|+||||+++++.+.+ +.+++.+.-. ++. . ...+.....+...+..+.+..|+
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD 227 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPK 227 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCC
Confidence 33468899999999999999998876 2345554311 111 0 00111112345556666778999
Q ss_pred eEEEcCCcc
Q psy7673 77 VIFFDEIDA 85 (541)
Q Consensus 77 il~iDe~d~ 85 (541)
+|++.|+-.
T Consensus 228 ~I~vGEiRd 236 (372)
T TIGR02525 228 IIGVGEIRD 236 (372)
T ss_pred EEeeCCCCC
Confidence 999999853
No 463
>PLN02200 adenylate kinase family protein
Probab=97.06 E-value=0.00076 Score=62.72 Aligned_cols=40 Identities=25% Similarity=0.455 Sum_probs=32.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN 53 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~ 53 (541)
...+..++|.|+||+||||+++.+++.+++. .+++++++.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 3456678999999999999999999998864 567777654
No 464
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.05 E-value=0.0037 Score=56.53 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=26.3
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
|...++..+.|.||+|+||||+++.++...
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356678889999999999999999999865
No 465
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.05 E-value=0.0007 Score=59.85 Aligned_cols=34 Identities=24% Similarity=0.568 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKG 48 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~ 48 (541)
...|+|.|++|+|||++++.+++.++++++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999988776553
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.05 E-value=0.0017 Score=58.31 Aligned_cols=73 Identities=23% Similarity=0.292 Sum_probs=46.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeCc-ccccc--------c-----cCchHHHHHHHHHHHHhcCC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGP-ELLNM--------Y-----LGESERAVRQCFQRARNSQP 75 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~--~~~~~i~~~-~l~~~--------~-----~~~~~~~~~~~~~~~~~~~~ 75 (541)
......++|.||+|+||||++++++..+. ...+.+.-. ++... + ...........+..+.+..|
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~p 101 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRP 101 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCC
Confidence 45678899999999999999999998763 223333211 11000 0 00112234556666677789
Q ss_pred ceEEEcCCc
Q psy7673 76 CVIFFDEID 84 (541)
Q Consensus 76 ~il~iDe~d 84 (541)
++++++|+-
T Consensus 102 d~i~igEir 110 (186)
T cd01130 102 DRIIVGEVR 110 (186)
T ss_pred CEEEEEccC
Confidence 999999984
No 467
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.05 E-value=0.0011 Score=48.50 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=23.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CCcEEEEe
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEA-GINFISVK 47 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~-~~~~~~i~ 47 (541)
+.+.|++|+|||++++.+++.+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999986 33444443
No 468
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.04 E-value=0.0044 Score=55.84 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=23.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
|......++|.|+.|+|||+.++.|+.+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 4455567889999999999999999766
No 469
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.04 E-value=0.0032 Score=59.10 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---------------CCcEEEEeCcc
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEA---------------GINFISVKGPE 50 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~---------------~~~~~~i~~~~ 50 (541)
-+|.||+|+|||+++..+|... +.++++++..+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 5899999999999999998643 34677777543
No 470
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.02 E-value=0.00056 Score=60.03 Aligned_cols=32 Identities=38% Similarity=0.725 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
++|+||+|+||||+++.+++.++..+ ++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~--v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKF--IEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeE--EeCccc
Confidence 57899999999999999999998655 454444
No 471
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.02 E-value=0.06 Score=54.96 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=48.0
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhH-HHhhh
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPK-LGMLL 363 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~-~~~ll 363 (541)
..+.+.|.+.+ +.+++|+.+++|.+|+.++++|.|++.+|+++.||.||.|.-.+. +.+.+
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~l 174 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLA 174 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhc
Confidence 45666777766 447899999999999998888999888888899999999986544 33443
No 472
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.02 E-value=0.04 Score=55.73 Aligned_cols=55 Identities=24% Similarity=0.245 Sum_probs=44.8
Q ss_pred HHHHHHHHHhc-cCC-cEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChh
Q psy7673 303 QTIVNTLGEHL-SNK-VEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAP 357 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~-~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 357 (541)
..+.+.|.+.+ +.+ ++|+.+++|+.|..++++|.|++.+|+.+.+|.||.|....
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCC
Confidence 45677777766 334 79999999999998888899988888889999999986554
No 473
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.02 E-value=0.00065 Score=58.33 Aligned_cols=30 Identities=30% Similarity=0.664 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
+.|.|++|+|||++++.++..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999887665
No 474
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.02 E-value=0.052 Score=55.00 Aligned_cols=61 Identities=23% Similarity=0.235 Sum_probs=49.8
Q ss_pred ccHHHHHHHHHHhc-cC-CcEEeccceeeEEEEeCCcEEEEec-CceeEeeCEEEEcCChhHHH
Q psy7673 300 GGLQTIVNTLGEHL-SN-KVEVKMDTTCTNLEFLEKGVKVTLN-NDQHIEANHVVSALPAPKLG 360 (541)
Q Consensus 300 ~G~~~l~~~l~~~l-~~-~~~i~~~~~V~~I~~~~~~~~v~~~-~g~~~~ad~VI~t~P~~~~~ 360 (541)
=....+.+.|.+.+ .. +++++.++.|+.++++++++.++.. +|+++.||.||-|=-.....
T Consensus 101 ~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~v 164 (387)
T COG0654 101 VPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAV 164 (387)
T ss_pred eEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHH
Confidence 34577888888888 33 3799999999999999999888888 89899999999997655443
No 475
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.01 E-value=0.00062 Score=61.64 Aligned_cols=33 Identities=39% Similarity=0.712 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL 52 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~ 52 (541)
|+|+|+||+||||+++.+++.+++.+ ++..+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHH
Confidence 79999999999999999999987655 4555554
No 476
>PRK07588 hypothetical protein; Provisional
Probab=97.01 E-value=0.087 Score=53.48 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhH
Q psy7673 303 QTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 303 ~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
..|.+.|.+.+..+++|++++.|++|++++++|.|++.+|+.+.+|.||-|--...
T Consensus 103 ~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 103 GDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred HHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 34555666666556799999999999998889999998998889999999876543
No 477
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.01 E-value=0.0019 Score=61.33 Aligned_cols=71 Identities=23% Similarity=0.272 Sum_probs=46.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEe-Cccccc------cccCchHHHHHHHHHHHHhcCCceEEEcCCc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAG---INFISVK-GPELLN------MYLGESERAVRQCFQRARNSQPCVIFFDEID 84 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~-~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d 84 (541)
...++|.|++|+||||+++++...+. ..++.+. ..++.- .........+...+..+.+..|++|+++|+.
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 34589999999999999999987763 3445442 112110 0111112235566666777899999999985
Q ss_pred c
Q psy7673 85 A 85 (541)
Q Consensus 85 ~ 85 (541)
.
T Consensus 160 ~ 160 (264)
T cd01129 160 D 160 (264)
T ss_pred C
Confidence 4
No 478
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.00 E-value=0.011 Score=56.43 Aligned_cols=39 Identities=28% Similarity=0.469 Sum_probs=31.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPE 50 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~ 50 (541)
..++..++|+||+|+||||++..+|..+ +..+..+++..
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4556788899999999999999998766 66777777653
No 479
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.00 E-value=0.0055 Score=60.55 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
..++.-++|.||+|+|||++++.+++.+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 45666799999999999999999999863
No 480
>PF13245 AAA_19: Part of AAA domain
Probab=97.00 E-value=0.0014 Score=48.81 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=17.6
Q ss_pred CcEEEEEcCCCCcHH-HHHHHHHHHh
Q psy7673 15 PSGVLLCGPPGCGKT-LLAKAVANEA 39 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT-~l~~~~a~~~ 39 (541)
+.-+++.|||||||| ++++.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344666999999999 5555555554
No 481
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.00 E-value=0.007 Score=55.87 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=23.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
..+...-++|+||+|+|||++++.++..
T Consensus 26 ~~~~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 26 TRGKSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred eecCCeEEEEECCCCCChHHHHHHHHHH
Confidence 3445667899999999999999998753
No 482
>PRK13946 shikimate kinase; Provisional
Probab=96.99 E-value=0.00068 Score=60.74 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
.+..|+|.|.+|+|||++++.+|+.++++++..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3467999999999999999999999999987655
No 483
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.99 E-value=0.0039 Score=69.49 Aligned_cols=185 Identities=18% Similarity=0.193 Sum_probs=100.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHH-HHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHH---Hh-----------cCCc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLA-KAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRA---RN-----------SQPC 76 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~-~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~---~~-----------~~~~ 76 (541)
....++++++||||+|||+++ -++-++....++.+|.+.-.. +...+..+-... .. -+.-
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhhe
Confidence 557889999999999999974 467778888999998654321 111111111111 00 0114
Q ss_pred eEEEcCCccccCCCCCCCCCC---hhHHHHHH--HHHHhc-CCCCCCCeEEEEecCCCCC-----CCccccCCCCCCeEE
Q psy7673 77 VIFFDEIDALCPKRSSLGDNN---SSMRIVNQ--LLTEMD-GFEGRGGVFLMAATNRPDI-----IDPAVMRPGRFDRIL 145 (541)
Q Consensus 77 il~iDe~d~l~~~~~~~~~~~---~~~~~~~~--l~~~l~-~~~~~~~~~vi~t~~~~~~-----l~~~l~~~~r~~~~i 145 (541)
|||.|||+ |.....- .... ..+.++.. +...+. ....-+++++.++||++.+ +++.+.+ -...+
T Consensus 1566 VLFcDeIn-Lp~~~~y-~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r---~~v~v 1640 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEY-YPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR---KPVFV 1640 (3164)
T ss_pred EEEeeccC-Ccccccc-CCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc---CceEE
Confidence 89999998 3222111 0111 11222221 111111 1122357899999998764 3344443 24568
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCC-----CCCC-----CCHHHHHhh------hhcCCCCHHHHHHHHHHHHHHHH
Q psy7673 146 FVNLPNEQDRKEILLALTKQGKDPM-----MGED-----VDFDKIAAD------ERCEGFSGADLEQLVKEAREQAI 206 (541)
Q Consensus 146 ~~~~p~~~~r~~il~~~~~~~~~~~-----~~~~-----~~~~~l~~~------~~~~g~~~~dl~~l~~~a~~~a~ 206 (541)
.+..|+......|.+..+..-.... +.++ +.+-....+ +..-+|+||+|-..++.....|.
T Consensus 1641 f~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yae 1717 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAE 1717 (3164)
T ss_pred EecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHh
Confidence 8899999999998887766421000 0000 000000000 12357999999988876655444
No 484
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.0012 Score=58.90 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45677788999999999999999998765
No 485
>PRK14528 adenylate kinase; Provisional
Probab=96.98 E-value=0.0008 Score=60.36 Aligned_cols=35 Identities=31% Similarity=0.583 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL 52 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~ 52 (541)
+.+++.||||+||||+++.+++.++++++ ++.++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~i--s~~~~l 36 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQI--STGDIL 36 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee--eCCHHH
Confidence 46899999999999999999999987665 444443
No 486
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.98 E-value=0.0031 Score=54.25 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=28.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccc
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEA---GINFISVKGPEL 51 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l 51 (541)
++|+|+||+|||++++.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999988 667777775443
No 487
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.01 Score=59.24 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=43.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCcccccc-------c---c---CchHHHHHHHHHHHHhcCCc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGPELLNM-------Y---L---GESERAVRQCFQRARNSQPC 76 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~~l~~~-------~---~---~~~~~~~~~~~~~~~~~~~~ 76 (541)
.+..++|.||+|+||||++..+|..+ +..+..+++...... + . .........+...+.....+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 45568899999999999999998754 455666666542211 0 0 01111233334444444568
Q ss_pred eEEEcCCc
Q psy7673 77 VIFFDEID 84 (541)
Q Consensus 77 il~iDe~d 84 (541)
+|+||=..
T Consensus 302 ~VLIDTaG 309 (432)
T PRK12724 302 LILIDTAG 309 (432)
T ss_pred EEEEeCCC
Confidence 89999643
No 488
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.98 E-value=0.0012 Score=63.29 Aligned_cols=73 Identities=27% Similarity=0.407 Sum_probs=47.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeC-cccccc------cc-CchHHHHHHHHHHHHhcCCceEEEc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG---INFISVKG-PELLNM------YL-GESERAVRQCFQRARNSQPCVIFFD 81 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~~-~~l~~~------~~-~~~~~~~~~~~~~~~~~~~~il~iD 81 (541)
+...++++.|++|+||||+++++...+. .+++.+.- .++.-. .. ......+...+..+.+..|++|+++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiig 204 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIG 204 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEES
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccc
Confidence 3577899999999999999999998883 45555542 121110 01 1123345667777778899999999
Q ss_pred CCcc
Q psy7673 82 EIDA 85 (541)
Q Consensus 82 e~d~ 85 (541)
|+-.
T Consensus 205 EiR~ 208 (270)
T PF00437_consen 205 EIRD 208 (270)
T ss_dssp CE-S
T ss_pred ccCC
Confidence 9854
No 489
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.98 E-value=0.016 Score=56.49 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=30.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
...+..++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 3456788999999999999999999877 5667766664
No 490
>PRK06834 hypothetical protein; Provisional
Probab=96.97 E-value=0.054 Score=56.57 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=44.1
Q ss_pred HHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhH
Q psy7673 304 TIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 304 ~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
.+-+.|.+.+ +.|++|+++++|+.|.+++++|.|+..+|+++.+|+||.|.-...
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 4555565655 347899999999999998889999887787899999999975543
No 491
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.96 E-value=0.00093 Score=59.12 Aligned_cols=32 Identities=34% Similarity=0.686 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
..++|+|.+|+|||++++.+|+.++++++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46899999999999999999999999877543
No 492
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.95 E-value=0.0019 Score=62.87 Aligned_cols=72 Identities=21% Similarity=0.308 Sum_probs=47.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe-Cccccc------cccCchHHHHHHHHHHHHhcCCceEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVK-GPELLN------MYLGESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~-~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
....+++++|++|+||||++++++..+ ..+++.+. ..++.- .+.......+..++..+.+..|+.|++
T Consensus 146 ~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~Iiv 225 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILV 225 (319)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 356789999999999999999999864 23333332 111110 011111224667777788889999999
Q ss_pred cCCc
Q psy7673 81 DEID 84 (541)
Q Consensus 81 De~d 84 (541)
.|+-
T Consensus 226 GEiR 229 (319)
T PRK13894 226 GEVR 229 (319)
T ss_pred eccC
Confidence 9984
No 493
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.95 E-value=0.053 Score=54.71 Aligned_cols=200 Identities=13% Similarity=0.026 Sum_probs=100.7
Q ss_pred HHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhhhcCCCCccEE
Q psy7673 305 IVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNLLSSIEHVNVA 383 (541)
Q Consensus 305 l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~~~~~~~~~ 383 (541)
+..++.+.+ ..|++++++++|++|..++++|.|.+.+| .+.+|+||+|+.++. ..+++.+ .++..++-
T Consensus 151 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~-~~l~~~~---------~~~i~~~~ 219 (376)
T PRK11259 151 AIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV-KDLLPPL---------ELPLTPVR 219 (376)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch-hhhcccc---------cCCceEEE
Confidence 344444444 45789999999999999888899988877 689999999998763 3444321 11222222
Q ss_pred EEEEeeCCCCC--CCCcc-EEEecCCCCCCceEEEeecccccC-CCc-EEEEEEecCccC--Cccc-CCCCHHHHHHHHH
Q psy7673 384 VINLAYENIPM--KQNAF-GFLVPPREKLPILGVVFDSCCFEQ-ADW-TILTVMMGGAWY--DTYF-KGQSKEYILDIAC 455 (541)
Q Consensus 384 ~v~l~~~~~~~--~~~~~-g~l~~~~~~~~~~~~~~~s~~~~~-~~~-~~l~~~~~g~~~--~~~~-~~~~~e~~~~~~~ 455 (541)
...+.++.... ....+ .+......+ . .+| ..+. .+. ..+.....|.+. .... ...+.++..+.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~---~~y---~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (376)
T PRK11259 220 QVLAWFQADGRYSEPNRFPAFIWEVPDG-D---QYY---GFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELR 292 (376)
T ss_pred EEEEEEecCCccCCccCCCEEEEecCCC-c---eeE---eccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHH
Confidence 22233322100 00000 010000000 0 001 0111 111 111111111110 0000 0012356777888
Q ss_pred HHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHHHHHHhh
Q psy7673 456 RYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAVESIKW 533 (541)
Q Consensus 456 ~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~aa~~i~~ 533 (541)
+.+.+.++.... ....|....| +++.....+... ...+||+++..+. |.|+--+-..|+.+|+.|+.
T Consensus 293 ~~~~~~~P~~~~----~~~~~~g~~~-~t~D~~P~ig~~-----~~~~gl~~~~G~~-g~G~~~ap~~g~~la~li~~ 359 (376)
T PRK11259 293 PFLRNYLPGVGP----CLRGAACTYT-NTPDEHFIIDTL-----PGHPNVLVASGCS-GHGFKFASVLGEILADLAQD 359 (376)
T ss_pred HHHHHHCCCCCc----cccceEEecc-cCCCCCceeecC-----CCCCCEEEEeccc-chhhhccHHHHHHHHHHHhc
Confidence 888888864322 3445655444 333322111111 1246899886554 46788888899999998843
No 494
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.94 E-value=0.0028 Score=57.28 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+-+.||+|+|||++.|.+...+
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 34566678899999999999999998765
No 495
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.011 Score=60.12 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPEL 51 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l 51 (541)
.+..++|.||+|+||||++..+|..+ +..+..+++...
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 35688999999999999999887654 356777877653
No 496
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.92 E-value=0.0041 Score=55.15 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=66.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcc----ccc-----------------------------cc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPE----LLN-----------------------------MY 55 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~----l~~-----------------------------~~ 55 (541)
.+.+.-+++-|+.|||||.+++.++-=. +..+.++.... ++. ..
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~ 104 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWG 104 (235)
T ss_pred CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccC
Confidence 5555668888999999999999997533 45555554211 000 00
Q ss_pred cCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccc
Q psy7673 56 LGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAV 135 (541)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l 135 (541)
.....+.++.+.+..+.....|++||-+..+.... ..+....++..+..+.+.++ +||.|.| |+.++++.
T Consensus 105 ~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~--------~~~~vl~fm~~~r~l~d~gK-vIilTvh-p~~l~e~~ 174 (235)
T COG2874 105 RRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD--------SEDAVLNFMTFLRKLSDLGK-VIILTVH-PSALDEDV 174 (235)
T ss_pred hHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc--------cHHHHHHHHHHHHHHHhCCC-EEEEEeC-hhhcCHHH
Confidence 12234445555555566667899999998875331 22233444454554444443 4445544 45566555
Q ss_pred cC
Q psy7673 136 MR 137 (541)
Q Consensus 136 ~~ 137 (541)
..
T Consensus 175 ~~ 176 (235)
T COG2874 175 LT 176 (235)
T ss_pred HH
Confidence 43
No 497
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.92 E-value=0.0011 Score=56.68 Aligned_cols=38 Identities=34% Similarity=0.466 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELL 52 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~ 52 (541)
+..|+|+|.||+||||+++++.+.+ +.+++.++...+.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 4568999999999999999999887 7888888876654
No 498
>PRK06847 hypothetical protein; Provisional
Probab=96.92 E-value=0.11 Score=52.42 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=44.7
Q ss_pred HHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhH
Q psy7673 304 TIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 304 ~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
.+.+.|.+.+ ..|++|+++++|++|..+++++.|++.+|+++.+|.||.|.-...
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 4556666655 346799999999999988888999888888899999999987643
No 499
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.001 Score=58.77 Aligned_cols=34 Identities=38% Similarity=0.739 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL 52 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~ 52 (541)
.|+|.||||+||||+|+.|++.++ +..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHh
Confidence 589999999999999999999944 4555654443
No 500
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.91 E-value=0.0035 Score=56.97 Aligned_cols=43 Identities=26% Similarity=0.565 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEeCcccccc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA-GINFISVKGPELLNM 54 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~-~~~~~~i~~~~l~~~ 54 (541)
...|.-+++.|+||+|||++++.+...+ ...++.+|..++...
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 3567789999999999999999999988 788899998876543
Done!