Query psy7673
Match_columns 541
No_of_seqs 386 out of 4263
Neff 10.0
Searched_HMMs 29240
Date Sat Aug 17 00:30:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3.2E-41 1.1E-45 330.0 20.4 222 2-244 166-392 (405)
2 4b4t_I 26S protease regulatory 100.0 3.6E-40 1.2E-44 322.8 19.5 224 2-246 200-428 (437)
3 4b4t_L 26S protease subunit RP 100.0 1.7E-39 5.9E-44 323.6 22.5 224 2-246 199-427 (437)
4 4b4t_M 26S protease regulatory 100.0 1.4E-39 4.9E-44 323.9 21.9 224 2-246 199-427 (434)
5 4b4t_H 26S protease regulatory 100.0 4.2E-39 1.4E-43 318.6 20.5 221 2-243 227-452 (467)
6 4b4t_K 26S protease regulatory 100.0 2.4E-38 8.2E-43 315.0 21.2 224 2-246 190-420 (428)
7 3cf2_A TER ATPase, transitiona 100.0 1.2E-38 4E-43 339.3 8.6 259 1-264 494-766 (806)
8 3cf2_A TER ATPase, transitiona 100.0 1.8E-36 6.1E-41 322.6 19.4 237 2-244 222-462 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-33 5.6E-38 275.2 25.5 255 2-263 30-321 (322)
10 3eie_A Vacuolar protein sortin 100.0 1.7E-33 5.8E-38 276.0 20.6 256 2-264 36-321 (322)
11 3cf0_A Transitional endoplasmi 100.0 4.4E-33 1.5E-37 270.2 20.8 253 3-260 34-300 (301)
12 2qp9_X Vacuolar protein sortin 100.0 1.1E-32 3.9E-37 273.0 21.3 256 2-264 69-354 (355)
13 3nks_A Protoporphyrinogen oxid 100.0 2.7E-32 9.3E-37 283.6 22.4 243 291-534 222-473 (477)
14 2x8a_A Nuclear valosin-contain 100.0 3.5E-32 1.2E-36 259.1 20.8 242 2-249 28-272 (274)
15 2zan_A Vacuolar protein sortin 100.0 8.7E-32 3E-36 274.4 20.0 255 2-263 152-443 (444)
16 3hu3_A Transitional endoplasmi 100.0 6.8E-31 2.3E-35 268.8 17.9 257 4-304 224-484 (489)
17 3i6d_A Protoporphyrinogen oxid 100.0 6.8E-29 2.3E-33 257.5 25.7 237 294-534 226-467 (470)
18 3lov_A Protoporphyrinogen oxid 100.0 9.4E-29 3.2E-33 256.6 26.3 236 293-534 226-464 (475)
19 3d8b_A Fidgetin-like protein 1 100.0 2.5E-29 8.5E-34 249.6 20.1 249 3-262 103-355 (357)
20 3qj4_A Renalase; FAD/NAD(P)-bi 100.0 5E-29 1.7E-33 247.3 21.1 228 295-533 104-340 (342)
21 2ce7_A Cell division protein F 100.0 1.3E-28 4.3E-33 249.6 23.6 213 11-244 45-259 (476)
22 1lv7_A FTSH; alpha/beta domain 100.0 8.9E-28 3E-32 228.0 25.7 212 11-243 41-254 (257)
23 3b9p_A CG5977-PA, isoform A; A 100.0 5E-29 1.7E-33 242.1 17.4 249 4-263 41-294 (297)
24 3h4m_A Proteasome-activating n 100.0 2E-28 6.7E-33 236.5 20.4 230 11-261 47-280 (285)
25 3vfd_A Spastin; ATPase, microt 100.0 1.4E-28 4.8E-33 247.6 19.1 247 5-262 136-386 (389)
26 2ivd_A PPO, PPOX, protoporphyr 100.0 4.7E-27 1.6E-31 244.1 25.4 241 294-539 229-476 (478)
27 2qz4_A Paraplegin; AAA+, SPG7, 99.9 4.1E-27 1.4E-31 224.3 17.2 215 11-244 35-252 (262)
28 2dhr_A FTSH; AAA+ protein, hex 99.9 7E-27 2.4E-31 238.2 19.2 213 11-244 60-274 (499)
29 1sez_A Protoporphyrinogen oxid 99.9 1.4E-26 4.8E-31 242.2 22.0 235 294-534 234-492 (504)
30 1ypw_A Transitional endoplasmi 99.9 1.2E-29 4.3E-34 275.7 -3.3 257 2-263 495-765 (806)
31 1ixz_A ATP-dependent metallopr 99.9 4.4E-26 1.5E-30 216.0 20.6 207 11-238 45-253 (254)
32 1iy2_A ATP-dependent metallopr 99.9 4.4E-25 1.5E-29 211.7 20.9 207 11-238 69-277 (278)
33 2r62_A Cell division protease 99.9 1.4E-27 4.6E-32 228.4 1.4 217 11-248 40-260 (268)
34 3t15_A Ribulose bisphosphate c 99.9 4.3E-24 1.5E-28 205.7 17.4 175 11-196 32-222 (293)
35 2z3y_A Lysine-specific histone 99.9 8.4E-24 2.9E-28 226.7 18.6 233 294-536 392-659 (662)
36 1ypw_A Transitional endoplasmi 99.9 1.7E-23 5.8E-28 227.6 20.5 236 3-244 223-462 (806)
37 2xag_A Lysine-specific histone 99.9 1.1E-23 3.9E-28 228.1 15.9 232 294-535 563-829 (852)
38 1s3e_A Amine oxidase [flavin-c 99.9 1.6E-22 5.5E-27 211.9 21.0 233 294-534 206-453 (520)
39 2jae_A L-amino acid oxidase; o 99.9 2.5E-23 8.6E-28 216.5 14.0 239 293-538 229-487 (489)
40 4dsg_A UDP-galactopyranose mut 99.9 4.1E-22 1.4E-26 205.9 20.9 227 296-532 209-452 (484)
41 3ka7_A Oxidoreductase; structu 99.9 2.8E-22 9.6E-27 204.9 18.2 224 295-532 188-424 (425)
42 1b37_A Protein (polyamine oxid 99.9 4.4E-22 1.5E-26 206.0 18.8 235 295-534 198-457 (472)
43 2yg5_A Putrescine oxidase; oxi 99.9 2.4E-22 8.1E-27 207.2 16.7 230 294-534 206-450 (453)
44 4gut_A Lysine-specific histone 99.9 9.3E-22 3.2E-26 212.0 15.8 228 295-533 526-775 (776)
45 1yvv_A Amine oxidase, flavin-c 99.9 9E-21 3.1E-25 187.3 20.9 221 295-534 102-326 (336)
46 2vvm_A Monoamine oxidase N; FA 99.9 1.3E-20 4.3E-25 196.5 22.9 226 294-534 246-484 (495)
47 2iid_A L-amino-acid oxidase; f 99.9 3.5E-21 1.2E-25 200.8 17.5 233 293-534 231-483 (498)
48 3nrn_A Uncharacterized protein 99.8 5.2E-20 1.8E-24 187.7 21.4 214 295-531 181-403 (421)
49 4gde_A UDP-galactopyranose mut 99.8 7.3E-20 2.5E-24 191.7 20.2 232 295-533 214-477 (513)
50 1rsg_A FMS1 protein; FAD bindi 99.8 6.1E-18 2.1E-22 176.8 20.5 230 298-534 198-506 (516)
51 3syl_A Protein CBBX; photosynt 99.8 8.8E-19 3E-23 170.8 12.6 186 12-211 64-268 (309)
52 1ofh_A ATP-dependent HSL prote 99.8 3.4E-18 1.2E-22 166.8 14.2 216 13-242 48-300 (310)
53 3uk6_A RUVB-like 2; hexameric 99.7 8E-18 2.7E-22 168.3 14.5 194 11-241 66-330 (368)
54 1d2n_A N-ethylmaleimide-sensit 99.7 8.7E-18 3E-22 160.4 12.1 179 11-202 60-246 (272)
55 2c9o_A RUVB-like 1; hexameric 99.7 1.7E-17 5.9E-22 169.8 14.1 205 11-242 59-438 (456)
56 3pfi_A Holliday junction ATP-d 99.7 1.6E-16 5.6E-21 156.7 18.4 188 12-242 52-255 (338)
57 2b9w_A Putative aminooxidase; 99.7 5.4E-17 1.8E-21 165.5 15.0 222 294-532 197-423 (424)
58 3m6a_A ATP-dependent protease 99.7 2.9E-17 9.9E-22 171.1 12.0 206 14-242 107-342 (543)
59 3hws_A ATP-dependent CLP prote 99.7 2.8E-17 9.4E-22 163.7 11.2 215 14-239 50-347 (363)
60 3ayj_A Pro-enzyme of L-phenyla 99.7 4.8E-17 1.6E-21 171.6 12.8 240 293-535 337-679 (721)
61 2v1u_A Cell division control p 99.7 4.4E-16 1.5E-20 156.7 16.8 202 12-241 41-276 (387)
62 1hqc_A RUVB; extended AAA-ATPa 99.7 6.7E-16 2.3E-20 151.4 17.4 188 13-242 36-239 (324)
63 2z4s_A Chromosomal replication 99.7 7.5E-17 2.6E-21 163.8 10.7 195 15-243 130-334 (440)
64 3k7m_X 6-hydroxy-L-nicotine ox 99.7 4.4E-16 1.5E-20 159.1 16.5 216 297-536 201-427 (431)
65 3te6_A Regulatory protein SIR3 99.7 1.8E-16 6E-21 151.9 12.1 184 11-212 41-293 (318)
66 4dgk_A Phytoene dehydrogenase; 99.7 3.1E-15 1.1E-19 155.9 21.0 243 294-537 212-493 (501)
67 1l8q_A Chromosomal replication 99.6 7.3E-16 2.5E-20 151.0 13.2 193 14-241 36-240 (324)
68 3pvs_A Replication-associated 99.6 8.3E-16 2.9E-20 155.7 13.7 187 15-244 50-247 (447)
69 2qby_B CDC6 homolog 3, cell di 99.6 3.3E-15 1.1E-19 150.2 16.5 193 12-242 42-271 (384)
70 1g41_A Heat shock protein HSLU 99.6 6E-15 2.1E-19 147.1 17.6 154 76-241 252-433 (444)
71 3bos_A Putative DNA replicatio 99.6 2.1E-15 7.1E-20 141.2 13.0 182 14-239 51-241 (242)
72 1um8_A ATP-dependent CLP prote 99.6 2.3E-15 8E-20 150.5 13.2 216 13-240 70-364 (376)
73 2chg_A Replication factor C sm 99.6 1.2E-14 4E-19 134.2 15.9 177 14-239 37-224 (226)
74 2qby_A CDC6 homolog 1, cell di 99.6 8E-15 2.7E-19 147.4 15.2 201 12-242 42-273 (386)
75 1r6b_X CLPA protein; AAA+, N-t 99.6 3.4E-14 1.2E-18 155.2 19.1 210 11-242 203-434 (758)
76 1fnn_A CDC6P, cell division co 99.6 3.3E-14 1.1E-18 143.0 17.3 201 17-250 46-283 (389)
77 2r44_A Uncharacterized protein 99.6 7.1E-14 2.4E-18 137.3 19.1 193 15-242 46-298 (331)
78 1jbk_A CLPB protein; beta barr 99.6 3.1E-15 1.1E-19 134.7 8.5 138 11-159 39-194 (195)
79 4fcw_A Chaperone protein CLPB; 99.6 5.6E-15 1.9E-19 143.9 10.7 181 14-210 46-283 (311)
80 1in4_A RUVB, holliday junction 99.6 2.3E-13 7.7E-18 133.5 22.1 187 13-242 49-251 (334)
81 3pxi_A Negative regulator of g 99.6 1.3E-14 4.3E-19 158.3 14.3 176 17-210 523-729 (758)
82 3pxg_A Negative regulator of g 99.6 6E-15 2.1E-19 151.1 9.2 171 11-207 197-387 (468)
83 1sxj_A Activator 1 95 kDa subu 99.5 4.5E-14 1.5E-18 146.7 15.0 188 13-241 75-274 (516)
84 1njg_A DNA polymerase III subu 99.5 5.4E-14 1.9E-18 131.6 14.1 179 13-239 43-249 (250)
85 3u61_B DNA polymerase accessor 99.5 3.4E-14 1.2E-18 139.2 12.3 130 11-163 44-178 (324)
86 1r6b_X CLPA protein; AAA+, N-t 99.5 2.4E-14 8.3E-19 156.4 11.8 182 14-209 487-719 (758)
87 1qvr_A CLPB protein; coiled co 99.5 2.8E-14 9.5E-19 157.3 12.2 186 11-207 187-394 (854)
88 1g8p_A Magnesium-chelatase 38 99.5 5.2E-14 1.8E-18 139.5 12.1 196 15-241 45-322 (350)
89 3pxi_A Negative regulator of g 99.5 8.9E-14 3.1E-18 151.6 11.9 171 11-208 197-388 (758)
90 1sxj_D Activator 1 41 kDa subu 99.5 3.5E-13 1.2E-17 133.6 15.2 183 16-241 59-263 (353)
91 2p65_A Hypothetical protein PF 99.5 6.5E-14 2.2E-18 125.3 8.7 130 12-151 40-187 (187)
92 1sxj_B Activator 1 37 kDa subu 99.4 1.1E-12 3.9E-17 128.2 15.3 176 17-241 44-231 (323)
93 2chq_A Replication factor C sm 99.4 3.6E-13 1.2E-17 131.5 11.6 162 16-201 39-207 (319)
94 1jr3_A DNA polymerase III subu 99.4 6.9E-13 2.4E-17 132.6 13.4 162 13-202 36-225 (373)
95 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.8E-13 6.2E-18 139.7 6.3 183 15-212 41-273 (500)
96 1qvr_A CLPB protein; coiled co 99.4 5.3E-13 1.8E-17 147.1 10.1 178 15-210 588-824 (854)
97 1iqp_A RFCS; clamp loader, ext 99.4 1.6E-12 5.6E-17 127.3 12.4 164 15-202 46-216 (327)
98 3f9v_A Minichromosome maintena 99.4 2.2E-13 7.5E-18 143.1 5.9 194 16-243 328-589 (595)
99 1sxj_E Activator 1 40 kDa subu 99.3 6E-12 2.1E-16 124.8 13.7 162 18-204 39-243 (354)
100 2bjv_A PSP operon transcriptio 99.3 3.8E-12 1.3E-16 120.7 10.9 175 13-205 27-240 (265)
101 1a5t_A Delta prime, HOLB; zinc 99.3 1.9E-11 6.5E-16 119.8 15.8 162 11-202 20-209 (334)
102 1ojl_A Transcriptional regulat 99.3 2.4E-12 8.4E-17 124.1 8.5 176 13-205 23-235 (304)
103 1w5s_A Origin recognition comp 99.3 9.8E-12 3.4E-16 125.9 12.3 203 13-242 48-294 (412)
104 1i8t_A UDP-galactopyranose mut 99.3 2.9E-11 9.9E-16 120.1 13.0 169 297-532 189-364 (367)
105 1sxj_C Activator 1 40 kDa subu 99.3 4.1E-12 1.4E-16 125.1 6.6 127 17-166 48-185 (340)
106 2bi7_A UDP-galactopyranose mut 99.2 5.5E-11 1.9E-15 118.8 13.5 168 297-534 193-369 (384)
107 2gno_A DNA polymerase III, gam 99.2 1.1E-10 3.8E-15 112.0 13.4 125 15-163 18-152 (305)
108 3n70_A Transport activator; si 99.2 3E-11 1E-15 103.0 7.9 92 13-128 22-116 (145)
109 1v0j_A UDP-galactopyranose mut 99.2 2.4E-11 8.2E-16 122.2 8.3 175 297-534 199-386 (399)
110 3co5_A Putative two-component 99.2 9.3E-12 3.2E-16 105.9 3.5 92 13-128 25-116 (143)
111 3k1j_A LON protease, ATP-depen 99.1 1.3E-10 4.3E-15 123.1 8.6 137 74-240 201-374 (604)
112 2krk_A 26S protease regulatory 99.0 4.4E-10 1.5E-14 85.2 6.3 77 147-244 8-84 (86)
113 2kjq_A DNAA-related protein; s 99.0 2.9E-10 9.8E-15 97.0 4.1 59 14-87 35-96 (149)
114 3kw6_A 26S protease regulatory 99.0 1.6E-09 5.5E-14 81.0 7.7 75 148-243 1-75 (78)
115 3vlf_B 26S protease regulatory 99.0 1.7E-09 5.8E-14 82.6 7.6 77 151-248 2-78 (88)
116 3aji_B S6C, proteasome (prosom 98.9 1E-09 3.6E-14 83.2 6.2 79 151-251 2-80 (83)
117 2e1m_C L-glutamate oxidase; L- 98.9 3.9E-09 1.3E-13 92.9 8.8 122 409-534 18-151 (181)
118 4akg_A Glutathione S-transfera 98.9 7.7E-09 2.6E-13 123.5 13.6 140 14-166 1266-1434(2695)
119 2vhj_A Ntpase P4, P4; non- hyd 98.9 1.2E-09 4.1E-14 103.4 5.0 120 12-134 120-241 (331)
120 3ec2_A DNA replication protein 98.8 2.8E-09 9.4E-14 94.4 5.8 74 11-86 34-112 (180)
121 2r2a_A Uncharacterized protein 98.7 2E-08 6.8E-13 89.6 7.8 127 15-152 5-155 (199)
122 3cmw_A Protein RECA, recombina 98.7 2.9E-08 9.9E-13 113.6 10.1 113 14-126 1081-1217(1706)
123 1ny5_A Transcriptional regulat 98.7 1.5E-08 5.1E-13 101.0 6.9 173 13-205 158-370 (387)
124 2fna_A Conserved hypothetical 98.7 6.5E-07 2.2E-11 88.2 18.7 165 16-200 31-252 (357)
125 2qen_A Walker-type ATPase; unk 98.7 5.8E-07 2E-11 88.4 17.5 168 16-200 32-248 (350)
126 2w58_A DNAI, primosome compone 98.7 1.9E-08 6.6E-13 90.7 5.6 71 15-87 54-128 (202)
127 2dzn_B 26S protease regulatory 98.6 1.5E-08 5.2E-13 76.3 3.8 75 153-248 1-76 (82)
128 3f8t_A Predicted ATPase involv 98.6 2.5E-08 8.7E-13 98.7 5.9 192 16-244 240-486 (506)
129 3dzd_A Transcriptional regulat 98.5 5.2E-08 1.8E-12 96.2 5.4 173 14-204 151-360 (368)
130 4akg_A Glutathione S-transfera 98.5 4.3E-07 1.5E-11 108.7 13.7 135 13-162 643-792 (2695)
131 2bcg_G Secretory pathway GDP d 98.5 2.6E-06 8.8E-11 86.9 16.5 193 297-533 236-439 (453)
132 2qgz_A Helicase loader, putati 98.5 1.7E-07 5.9E-12 90.1 7.1 72 14-87 151-227 (308)
133 3kkj_A Amine oxidase, flavin-c 98.4 1.4E-05 4.7E-10 75.5 18.5 222 298-538 105-329 (336)
134 1tue_A Replication protein E1; 98.4 6.6E-07 2.3E-11 78.7 7.2 34 11-44 54-87 (212)
135 3cmu_A Protein RECA, recombina 98.4 1E-06 3.5E-11 102.1 10.5 116 12-127 1424-1563(2050)
136 2e1m_B L-glutamate oxidase; L- 98.3 4E-08 1.4E-12 80.1 -2.3 103 343-463 4-109 (130)
137 1ye8_A Protein THEP1, hypothet 98.3 5E-06 1.7E-10 72.8 10.9 28 17-44 2-29 (178)
138 1d5t_A Guanine nucleotide diss 98.2 1.4E-05 4.7E-10 80.9 14.7 196 294-533 225-428 (433)
139 1jr3_D DNA polymerase III, del 98.2 4.4E-05 1.5E-09 74.7 16.5 180 12-243 15-211 (343)
140 3hr8_A Protein RECA; alpha and 98.2 1.3E-05 4.6E-10 77.8 12.2 116 12-127 58-197 (356)
141 3vkg_A Dynein heavy chain, cyt 98.2 9.5E-06 3.2E-10 98.0 13.3 140 14-165 1303-1471(3245)
142 3vkg_A Dynein heavy chain, cyt 98.1 1.5E-05 5.1E-10 96.4 14.5 124 14-159 603-749 (3245)
143 1svm_A Large T antigen; AAA+ f 98.1 3.1E-06 1E-10 83.2 6.4 119 10-147 164-282 (377)
144 2w0m_A SSO2452; RECA, SSPF, un 98.1 2.1E-05 7.3E-10 72.1 11.3 109 11-128 19-168 (235)
145 3hdq_A UDP-galactopyranose mut 98.1 3.7E-05 1.2E-09 76.2 13.4 170 297-533 217-389 (397)
146 1u0j_A DNA replication protein 98.1 1.9E-05 6.6E-10 72.9 10.6 119 13-162 102-250 (267)
147 1xp8_A RECA protein, recombina 98.1 1.9E-05 6.5E-10 77.3 11.0 116 11-127 70-210 (366)
148 2cvh_A DNA repair and recombin 98.0 1.8E-05 6.3E-10 71.9 9.2 40 11-50 16-55 (220)
149 1n0w_A DNA repair protein RAD5 97.9 2.5E-05 8.6E-10 72.2 9.0 79 11-89 20-134 (243)
150 2zr9_A Protein RECA, recombina 97.9 2.7E-05 9.2E-10 75.9 9.5 78 11-88 57-153 (349)
151 3io5_A Recombination and repai 97.9 3.6E-05 1.2E-09 72.6 9.2 111 17-127 30-171 (333)
152 1u94_A RECA protein, recombina 97.9 2.2E-05 7.5E-10 76.6 8.1 78 11-88 59-155 (356)
153 2z43_A DNA repair and recombin 97.8 2E-05 6.7E-10 76.4 6.2 116 11-127 103-257 (324)
154 1v5w_A DMC1, meiotic recombina 97.8 3E-05 1E-09 75.7 7.3 117 11-128 118-274 (343)
155 2ehv_A Hypothetical protein PH 97.8 0.0001 3.6E-09 68.3 10.3 114 11-131 26-185 (251)
156 3cmu_A Protein RECA, recombina 97.8 5.1E-05 1.8E-09 88.3 9.3 118 11-128 728-869 (2050)
157 2dr3_A UPF0273 protein PH0284; 97.7 0.00021 7.1E-09 66.1 11.4 39 11-49 19-60 (247)
158 3lda_A DNA repair protein RAD5 97.7 4.4E-05 1.5E-09 75.6 6.8 117 11-127 174-327 (400)
159 1ryi_A Glycine oxidase; flavop 97.7 0.00014 4.8E-09 72.1 9.7 196 303-533 164-361 (382)
160 2b8t_A Thymidine kinase; deoxy 97.6 0.00012 4E-09 66.2 8.2 72 14-86 11-101 (223)
161 1qhx_A CPT, protein (chloramph 97.6 0.0001 3.5E-09 64.4 7.6 35 15-49 3-37 (178)
162 1pzn_A RAD51, DNA repair and r 97.6 8.9E-05 3.1E-09 72.4 7.2 40 11-50 127-175 (349)
163 4a74_A DNA repair and recombin 97.6 5.6E-05 1.9E-09 69.2 5.0 40 11-50 21-69 (231)
164 3cmw_A Protein RECA, recombina 97.6 0.0002 6.8E-09 82.5 10.4 78 11-88 728-824 (1706)
165 2iut_A DNA translocase FTSK; n 97.5 0.00063 2.1E-08 69.7 12.5 74 76-160 345-420 (574)
166 2orw_A Thymidine kinase; TMTK, 97.5 6.9E-05 2.4E-09 65.9 4.7 33 15-47 3-38 (184)
167 2i1q_A DNA repair and recombin 97.5 7.7E-05 2.6E-09 72.2 5.4 115 11-126 94-257 (322)
168 3nyc_A D-arginine dehydrogenas 97.5 0.0066 2.3E-07 59.8 19.7 55 303-358 154-209 (381)
169 1g5t_A COB(I)alamin adenosyltr 97.5 0.00047 1.6E-08 60.4 9.8 102 16-128 29-163 (196)
170 1vg0_A RAB proteins geranylger 97.5 0.0099 3.4E-07 62.2 20.7 204 294-531 369-595 (650)
171 3vaa_A Shikimate kinase, SK; s 97.4 7.4E-05 2.5E-09 66.7 4.0 36 11-46 21-56 (199)
172 3trf_A Shikimate kinase, SK; a 97.4 8.1E-05 2.8E-09 65.6 3.9 33 14-46 4-36 (185)
173 1nlf_A Regulatory protein REPA 97.4 0.00033 1.1E-08 66.1 7.9 29 11-39 26-54 (279)
174 1cr0_A DNA primase/helicase; R 97.4 0.00084 2.9E-08 63.9 10.7 39 10-48 30-72 (296)
175 3iij_A Coilin-interacting nucl 97.4 0.00011 3.8E-09 64.4 3.9 32 14-45 10-41 (180)
176 3bh0_A DNAB-like replicative h 97.3 0.001 3.5E-08 63.9 10.9 39 11-49 64-105 (315)
177 2r6a_A DNAB helicase, replicat 97.3 0.00042 1.4E-08 70.3 8.6 39 11-49 199-241 (454)
178 2rhm_A Putative kinase; P-loop 97.3 0.00019 6.7E-09 63.5 5.3 34 12-45 2-35 (193)
179 2r8r_A Sensor protein; KDPD, P 97.3 0.0015 5.1E-08 58.6 10.9 34 16-49 7-43 (228)
180 2zts_A Putative uncharacterize 97.3 0.00086 2.9E-08 62.0 9.9 39 11-49 26-68 (251)
181 2ius_A DNA translocase FTSK; n 97.3 0.0008 2.7E-08 68.4 10.0 75 75-160 297-374 (512)
182 2cdn_A Adenylate kinase; phosp 97.3 0.00016 5.5E-09 64.6 4.4 37 10-46 15-51 (201)
183 3dme_A Conserved exported prot 97.3 0.018 6.2E-07 56.2 19.7 207 302-531 149-367 (369)
184 2p5t_B PEZT; postsegregational 97.3 0.0005 1.7E-08 63.9 7.5 40 12-51 29-68 (253)
185 1w4r_A Thymidine kinase; type 97.3 0.00055 1.9E-08 59.8 7.2 71 14-86 19-103 (195)
186 1z6t_A APAF-1, apoptotic prote 97.3 0.0042 1.4E-07 65.4 15.5 149 14-197 146-327 (591)
187 3e1s_A Exodeoxyribonuclease V, 97.3 0.00019 6.5E-09 74.9 4.9 34 15-48 204-240 (574)
188 2q6t_A DNAB replication FORK h 97.2 0.00067 2.3E-08 68.7 8.7 39 11-49 196-238 (444)
189 3crm_A TRNA delta(2)-isopenten 97.2 0.00031 1E-08 67.0 5.8 36 15-50 5-40 (323)
190 1zuh_A Shikimate kinase; alpha 97.2 0.00017 5.8E-09 62.4 3.7 34 13-46 5-38 (168)
191 3kb2_A SPBC2 prophage-derived 97.2 0.00021 7.2E-09 61.9 4.1 31 17-47 3-33 (173)
192 1y63_A LMAJ004144AAA protein; 97.2 0.00019 6.6E-09 63.1 3.8 32 13-44 8-40 (184)
193 1zp6_A Hypothetical protein AT 97.2 0.00021 7E-09 63.3 3.8 42 10-51 4-45 (191)
194 2iyv_A Shikimate kinase, SK; t 97.2 0.00019 6.4E-09 63.1 3.4 30 16-45 3-32 (184)
195 3ihg_A RDME; flavoenzyme, anth 97.2 0.013 4.6E-07 60.7 18.1 61 303-363 120-189 (535)
196 3dm5_A SRP54, signal recogniti 97.2 0.0021 7.3E-08 64.0 11.0 73 14-86 99-194 (443)
197 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.0011 3.6E-08 61.9 8.4 38 15-52 4-44 (260)
198 1vma_A Cell division protein F 97.1 0.00094 3.2E-08 63.6 8.1 75 11-85 100-197 (306)
199 1kag_A SKI, shikimate kinase I 97.1 0.00032 1.1E-08 60.8 4.5 30 15-44 4-33 (173)
200 2qa2_A CABE, polyketide oxygen 97.1 0.014 4.8E-07 59.9 17.5 61 303-363 107-172 (499)
201 2pez_A Bifunctional 3'-phospho 97.1 0.00046 1.6E-08 60.3 5.5 38 12-49 2-42 (179)
202 3jvv_A Twitching mobility prot 97.1 0.00072 2.5E-08 65.9 7.2 98 14-130 122-233 (356)
203 1via_A Shikimate kinase; struc 97.1 0.00031 1E-08 61.2 4.2 29 17-45 6-34 (175)
204 2fz4_A DNA repair protein RAD2 97.1 0.0032 1.1E-07 57.7 11.0 34 16-49 109-142 (237)
205 3pvc_A TRNA 5-methylaminomethy 97.1 0.008 2.7E-07 64.5 15.6 55 303-357 412-468 (689)
206 2qa1_A PGAE, polyketide oxygen 97.1 0.017 5.7E-07 59.3 17.2 61 303-363 106-171 (500)
207 1gvn_B Zeta; postsegregational 97.1 0.00037 1.3E-08 66.0 4.4 40 13-52 31-70 (287)
208 3umf_A Adenylate kinase; rossm 97.1 0.00052 1.8E-08 61.7 5.1 39 12-52 26-64 (217)
209 4a1f_A DNAB helicase, replicat 97.1 0.0009 3.1E-08 64.4 7.0 38 11-48 42-82 (338)
210 3rp8_A Flavoprotein monooxygen 97.1 0.0061 2.1E-07 60.8 13.5 54 303-357 127-180 (407)
211 2c95_A Adenylate kinase 1; tra 97.0 0.00035 1.2E-08 62.0 3.9 32 14-45 8-39 (196)
212 3kl4_A SRP54, signal recogniti 97.0 0.0039 1.3E-07 62.1 11.7 73 14-86 96-191 (433)
213 2ze6_A Isopentenyl transferase 97.0 0.00039 1.3E-08 64.6 4.2 32 17-48 3-34 (253)
214 3t61_A Gluconokinase; PSI-biol 97.0 0.00051 1.8E-08 61.3 4.8 36 14-51 17-52 (202)
215 1aky_A Adenylate kinase; ATP:A 97.0 0.00052 1.8E-08 62.2 4.9 32 14-45 3-34 (220)
216 2eyu_A Twitching motility prot 97.0 0.0012 4.1E-08 61.4 7.3 73 12-84 22-108 (261)
217 3cm0_A Adenylate kinase; ATP-b 97.0 0.00044 1.5E-08 60.8 4.2 30 15-44 4-33 (186)
218 3be4_A Adenylate kinase; malar 97.0 0.00046 1.6E-08 62.4 4.4 34 13-46 3-36 (217)
219 3atr_A Conserved archaeal prot 97.0 0.034 1.2E-06 56.2 18.6 56 303-358 100-162 (453)
220 1qf9_A UMP/CMP kinase, protein 97.0 0.00064 2.2E-08 60.0 5.0 33 13-45 4-36 (194)
221 1ukz_A Uridylate kinase; trans 97.0 0.00047 1.6E-08 61.6 4.1 34 12-45 12-45 (203)
222 2oln_A NIKD protein; flavoprot 97.0 0.083 2.8E-06 52.2 21.0 54 303-357 153-207 (397)
223 3ps9_A TRNA 5-methylaminomethy 97.0 0.0018 6.2E-08 69.4 9.3 55 303-357 417-472 (676)
224 1tev_A UMP-CMP kinase; ploop, 97.0 0.00057 1.9E-08 60.5 4.6 35 15-51 3-37 (196)
225 3tlx_A Adenylate kinase 2; str 97.0 0.00045 1.5E-08 63.7 3.9 33 13-45 27-59 (243)
226 2yvu_A Probable adenylyl-sulfa 97.0 0.00094 3.2E-08 58.7 5.9 47 1-49 1-50 (186)
227 2orv_A Thymidine kinase; TP4A 97.0 0.0038 1.3E-07 56.0 9.7 105 2-127 6-125 (234)
228 3bgw_A DNAB-like replicative h 97.0 0.0029 1E-07 63.7 10.1 39 11-49 193-234 (444)
229 1zd8_A GTP:AMP phosphotransfer 97.0 0.00054 1.9E-08 62.5 4.4 33 13-45 5-37 (227)
230 4gp7_A Metallophosphoesterase; 97.0 0.0013 4.5E-08 56.9 6.6 23 12-34 6-28 (171)
231 4eun_A Thermoresistant glucoki 96.9 0.00068 2.3E-08 60.4 4.9 38 12-51 26-63 (200)
232 2vli_A Antibiotic resistance p 96.9 0.00043 1.5E-08 60.6 3.5 30 15-44 5-34 (183)
233 1knq_A Gluconate kinase; ALFA/ 96.9 0.00077 2.6E-08 58.5 4.9 36 14-51 7-42 (175)
234 1e6c_A Shikimate kinase; phosp 96.9 0.00061 2.1E-08 59.0 4.3 30 16-45 3-32 (173)
235 3p1w_A Rabgdi protein; GDI RAB 96.9 0.00089 3.1E-08 67.7 5.9 64 293-356 246-312 (475)
236 3rlf_A Maltose/maltodextrin im 96.9 0.00095 3.3E-08 65.2 5.9 29 11-39 25-53 (381)
237 1kht_A Adenylate kinase; phosp 96.9 0.00057 2E-08 60.3 4.0 26 15-40 3-28 (192)
238 1ly1_A Polynucleotide kinase; 96.9 0.00051 1.7E-08 60.0 3.5 32 15-48 2-34 (181)
239 1ak2_A Adenylate kinase isoenz 96.9 0.0009 3.1E-08 61.3 5.2 32 14-45 15-46 (233)
240 2bwj_A Adenylate kinase 5; pho 96.9 0.00052 1.8E-08 61.0 3.6 36 14-51 11-46 (199)
241 3lw7_A Adenylate kinase relate 96.9 0.00072 2.4E-08 58.6 4.3 30 16-46 2-31 (179)
242 2pt5_A Shikimate kinase, SK; a 96.9 0.00059 2E-08 58.8 3.7 29 17-45 2-30 (168)
243 3upu_A ATP-dependent DNA helic 96.9 0.0011 3.9E-08 67.3 6.3 23 17-39 47-69 (459)
244 3fmw_A Oxygenase; mithramycin, 96.9 0.01 3.4E-07 62.0 13.6 61 303-363 148-213 (570)
245 1zak_A Adenylate kinase; ATP:A 96.9 0.00063 2.1E-08 61.8 3.9 32 13-44 3-34 (222)
246 2gf3_A MSOX, monomeric sarcosi 96.9 0.0074 2.5E-07 59.7 12.1 60 303-364 150-210 (389)
247 3dl0_A Adenylate kinase; phosp 96.8 0.00058 2E-08 61.7 3.6 30 17-46 2-31 (216)
248 1q57_A DNA primase/helicase; d 96.8 0.0037 1.3E-07 64.3 10.0 39 11-49 238-280 (503)
249 3uie_A Adenylyl-sulfate kinase 96.8 0.0013 4.3E-08 58.7 5.7 40 12-51 22-64 (200)
250 3nix_A Flavoprotein/dehydrogen 96.8 0.034 1.2E-06 55.5 16.9 55 303-357 106-165 (421)
251 3fb4_A Adenylate kinase; psych 96.8 0.00059 2E-08 61.6 3.5 30 17-46 2-31 (216)
252 3sr0_A Adenylate kinase; phosp 96.8 0.0011 3.6E-08 59.3 4.8 34 17-52 2-35 (206)
253 4g1u_C Hemin import ATP-bindin 96.8 0.0023 7.9E-08 59.6 7.3 29 11-39 33-61 (266)
254 3sfz_A APAF-1, apoptotic pepti 96.8 0.019 6.3E-07 66.2 16.5 150 13-195 145-325 (1249)
255 3foz_A TRNA delta(2)-isopenten 96.8 0.0019 6.5E-08 60.8 6.6 38 14-51 9-46 (316)
256 1xx6_A Thymidine kinase; NESG, 96.8 0.0012 4.2E-08 58.0 4.9 34 14-47 7-43 (191)
257 3fvq_A Fe(3+) IONS import ATP- 96.8 0.0028 9.4E-08 61.5 7.7 29 11-39 26-54 (359)
258 2px0_A Flagellar biosynthesis 96.8 0.0069 2.4E-07 57.3 10.4 38 13-50 103-144 (296)
259 4hb9_A Similarities with proba 96.7 0.015 5.3E-07 57.7 13.4 54 303-358 112-166 (412)
260 2ewv_A Twitching motility prot 96.7 0.0021 7.3E-08 63.1 6.6 73 12-84 133-219 (372)
261 3thx_B DNA mismatch repair pro 96.7 0.0039 1.3E-07 68.1 9.1 109 11-130 669-798 (918)
262 3tui_C Methionine import ATP-b 96.7 0.0023 7.9E-08 62.1 6.6 29 11-39 50-78 (366)
263 2pbr_A DTMP kinase, thymidylat 96.7 0.0016 5.4E-08 57.5 5.0 31 17-47 2-35 (195)
264 1nks_A Adenylate kinase; therm 96.7 0.0011 3.8E-08 58.5 3.9 34 17-50 3-39 (194)
265 3r20_A Cytidylate kinase; stru 96.7 0.0014 4.9E-08 59.4 4.7 36 14-51 8-43 (233)
266 2v54_A DTMP kinase, thymidylat 96.6 0.0014 4.8E-08 58.4 4.5 35 14-48 3-38 (204)
267 1cke_A CK, MSSA, protein (cyti 96.6 0.0017 5.9E-08 59.0 5.2 35 15-51 5-39 (227)
268 3nwj_A ATSK2; P loop, shikimat 96.6 0.0014 4.8E-08 60.4 4.5 32 15-46 48-79 (250)
269 1e4v_A Adenylate kinase; trans 96.6 0.0016 5.4E-08 58.7 4.7 30 17-46 2-31 (214)
270 2j9r_A Thymidine kinase; TK1, 96.6 0.004 1.4E-07 55.3 7.0 34 15-48 28-64 (214)
271 1uj2_A Uridine-cytidine kinase 96.6 0.0022 7.6E-08 59.4 5.6 41 13-53 20-68 (252)
272 2z0h_A DTMP kinase, thymidylat 96.6 0.002 7E-08 56.9 5.0 31 17-47 2-35 (197)
273 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.002 6.8E-08 62.2 5.2 73 13-85 169-251 (330)
274 2a5y_B CED-4; apoptosis; HET: 96.6 0.026 8.8E-07 58.7 14.0 124 14-163 151-306 (549)
275 1y56_B Sarcosine oxidase; dehy 96.5 0.023 7.7E-07 56.0 13.0 55 303-358 149-205 (382)
276 2bbw_A Adenylate kinase 4, AK4 96.5 0.0019 6.4E-08 59.6 4.7 31 14-44 26-56 (246)
277 2jaq_A Deoxyguanosine kinase; 96.5 0.0019 6.4E-08 57.6 4.6 28 17-44 2-29 (205)
278 1tf7_A KAIC; homohexamer, hexa 96.5 0.012 4.1E-07 60.8 11.2 110 11-128 277-417 (525)
279 2xb4_A Adenylate kinase; ATP-b 96.5 0.0018 6.2E-08 58.8 4.5 33 17-51 2-34 (223)
280 3cgv_A Geranylgeranyl reductas 96.5 0.1 3.5E-06 51.4 17.8 55 304-358 103-162 (397)
281 1tf7_A KAIC; homohexamer, hexa 96.5 0.01 3.5E-07 61.3 10.7 114 11-131 35-188 (525)
282 2grj_A Dephospho-COA kinase; T 96.5 0.0014 4.7E-08 57.9 3.5 37 13-51 10-46 (192)
283 3a8t_A Adenylate isopentenyltr 96.5 0.0013 4.5E-08 62.8 3.5 35 15-49 40-74 (339)
284 2if2_A Dephospho-COA kinase; a 96.5 0.0014 4.7E-08 58.6 3.3 29 17-46 3-31 (204)
285 1kgd_A CASK, peripheral plasma 96.5 0.002 6.7E-08 56.3 4.2 27 14-40 4-30 (180)
286 4e22_A Cytidylate kinase; P-lo 96.5 0.0024 8.3E-08 59.1 4.9 36 14-51 26-61 (252)
287 2plr_A DTMP kinase, probable t 96.4 0.0032 1.1E-07 56.4 5.4 28 15-42 4-31 (213)
288 3exa_A TRNA delta(2)-isopenten 96.4 0.003 1E-07 59.5 5.3 34 15-48 3-36 (322)
289 1ex7_A Guanylate kinase; subst 96.4 0.0026 8.8E-08 55.6 4.5 27 16-42 2-28 (186)
290 2qor_A Guanylate kinase; phosp 96.4 0.0019 6.5E-08 57.7 3.7 28 13-40 10-37 (204)
291 3ake_A Cytidylate kinase; CMP 96.4 0.0031 1E-07 56.3 4.9 29 17-45 4-32 (208)
292 3thx_A DNA mismatch repair pro 96.4 0.0087 3E-07 65.5 9.3 27 11-37 658-684 (934)
293 1w36_D RECD, exodeoxyribonucle 96.3 0.011 3.9E-07 62.0 9.9 25 15-39 164-188 (608)
294 2wwf_A Thymidilate kinase, put 96.3 0.0013 4.4E-08 59.1 2.1 28 14-41 9-36 (212)
295 3eph_A TRNA isopentenyltransfe 96.3 0.0053 1.8E-07 60.0 6.4 34 15-48 2-35 (409)
296 1uf9_A TT1252 protein; P-loop, 96.3 0.0028 9.6E-08 56.3 4.2 35 14-51 7-41 (203)
297 1jjv_A Dephospho-COA kinase; P 96.3 0.0027 9.1E-08 56.7 4.0 33 16-51 3-35 (206)
298 3tau_A Guanylate kinase, GMP k 96.2 0.0025 8.4E-08 57.2 3.6 28 13-40 6-33 (208)
299 1q3t_A Cytidylate kinase; nucl 96.2 0.0043 1.5E-07 56.8 5.0 37 13-51 14-50 (236)
300 1zu4_A FTSY; GTPase, signal re 96.2 0.02 6.7E-07 54.8 9.8 39 11-49 101-142 (320)
301 1htw_A HI0065; nucleotide-bind 96.2 0.0039 1.3E-07 53.0 4.3 29 11-39 29-57 (158)
302 1vht_A Dephospho-COA kinase; s 96.2 0.0041 1.4E-07 56.1 4.7 34 15-51 4-37 (218)
303 3e70_C DPA, signal recognition 96.2 0.017 5.7E-07 55.5 9.1 37 12-48 126-165 (328)
304 1m7g_A Adenylylsulfate kinase; 96.1 0.0043 1.5E-07 55.7 4.7 40 11-50 21-64 (211)
305 2yhs_A FTSY, cell division pro 96.1 0.021 7.1E-07 57.5 10.0 38 11-48 289-329 (503)
306 3zvl_A Bifunctional polynucleo 96.1 0.0032 1.1E-07 63.0 4.0 33 12-44 255-287 (416)
307 1nn5_A Similar to deoxythymidy 96.1 0.0038 1.3E-07 56.0 4.1 27 14-40 8-34 (215)
308 3d3q_A TRNA delta(2)-isopenten 96.1 0.0032 1.1E-07 60.4 3.6 32 16-47 8-39 (340)
309 2qt1_A Nicotinamide riboside k 96.1 0.0023 7.8E-08 57.3 2.5 39 12-51 18-56 (207)
310 2gmh_A Electron transfer flavo 96.1 0.42 1.4E-05 49.8 20.1 57 302-358 143-217 (584)
311 1lvg_A Guanylate kinase, GMP k 96.1 0.0033 1.1E-07 55.8 3.5 27 14-40 3-29 (198)
312 2bdt_A BH3686; alpha-beta prot 96.1 0.0046 1.6E-07 54.3 4.4 34 16-50 3-36 (189)
313 3a00_A Guanylate kinase, GMP k 96.1 0.0035 1.2E-07 55.0 3.5 25 16-40 2-26 (186)
314 3tr0_A Guanylate kinase, GMP k 96.1 0.0044 1.5E-07 55.2 4.2 27 14-40 6-32 (205)
315 2f6r_A COA synthase, bifunctio 96.0 0.0034 1.2E-07 59.1 3.6 34 15-51 75-108 (281)
316 2j41_A Guanylate kinase; GMP, 96.0 0.0043 1.5E-07 55.3 4.1 27 13-39 4-30 (207)
317 3asz_A Uridine kinase; cytidin 96.0 0.0057 2E-07 54.8 5.0 38 13-50 4-41 (211)
318 2h92_A Cytidylate kinase; ross 96.0 0.0047 1.6E-07 55.7 4.4 31 15-45 3-33 (219)
319 3llm_A ATP-dependent RNA helic 96.0 0.039 1.3E-06 50.2 10.6 23 14-36 75-97 (235)
320 3ney_A 55 kDa erythrocyte memb 96.0 0.0044 1.5E-07 54.6 4.0 27 14-40 18-44 (197)
321 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0014 4.8E-08 63.0 0.8 31 15-45 24-54 (359)
322 1p9r_A General secretion pathw 96.0 0.014 4.6E-07 58.1 7.9 72 13-84 165-246 (418)
323 1rz3_A Hypothetical protein rb 96.0 0.0084 2.9E-07 53.2 5.7 38 13-50 20-60 (201)
324 1j8m_F SRP54, signal recogniti 96.0 0.018 6.2E-07 54.5 8.2 72 15-86 98-192 (297)
325 2v3c_C SRP54, signal recogniti 95.9 0.023 7.8E-07 56.8 9.2 36 14-49 98-136 (432)
326 1z6g_A Guanylate kinase; struc 95.9 0.0044 1.5E-07 55.9 3.7 29 11-39 19-47 (218)
327 1vt4_I APAF-1 related killer D 95.9 0.024 8.3E-07 62.1 9.8 36 14-49 149-190 (1221)
328 1wb9_A DNA mismatch repair pro 95.9 0.019 6.6E-07 61.9 9.2 26 13-38 605-630 (800)
329 3b6e_A Interferon-induced heli 95.9 0.032 1.1E-06 49.8 9.4 25 15-39 48-72 (216)
330 3oz2_A Digeranylgeranylglycero 95.9 0.34 1.2E-05 47.4 17.8 54 304-357 103-161 (397)
331 2qmh_A HPR kinase/phosphorylas 95.9 0.0034 1.2E-07 54.8 2.7 31 14-45 33-63 (205)
332 2oap_1 GSPE-2, type II secreti 95.9 0.0057 2E-07 62.6 4.7 72 13-84 258-343 (511)
333 3c8u_A Fructokinase; YP_612366 95.9 0.0052 1.8E-07 55.0 3.9 28 13-40 20-47 (208)
334 2j37_W Signal recognition part 95.9 0.023 7.8E-07 57.8 9.0 74 13-86 99-195 (504)
335 1ltq_A Polynucleotide kinase; 95.9 0.0053 1.8E-07 58.4 4.1 28 15-42 2-30 (301)
336 3axb_A Putative oxidoreductase 95.9 0.061 2.1E-06 54.2 12.2 60 303-364 181-259 (448)
337 1ls1_A Signal recognition part 95.8 0.031 1E-06 52.9 9.1 73 14-86 97-192 (295)
338 1s96_A Guanylate kinase, GMP k 95.8 0.0061 2.1E-07 54.9 4.0 28 13-40 14-41 (219)
339 2v9p_A Replication protein E1; 95.8 0.0066 2.3E-07 57.4 4.4 34 10-43 121-154 (305)
340 3fdi_A Uncharacterized protein 95.8 0.0078 2.7E-07 53.5 4.6 29 16-44 7-35 (201)
341 1znw_A Guanylate kinase, GMP k 95.8 0.0066 2.3E-07 54.2 4.1 29 12-40 17-45 (207)
342 1x6v_B Bifunctional 3'-phospho 95.8 0.0088 3E-07 62.3 5.4 36 14-49 51-89 (630)
343 2xxa_A Signal recognition part 95.7 0.03 1E-06 55.9 9.2 74 13-86 98-195 (433)
344 3i3l_A Alkylhalidase CMLS; fla 95.6 0.038 1.3E-06 57.8 9.7 56 303-358 128-188 (591)
345 1xjc_A MOBB protein homolog; s 95.6 0.017 5.7E-07 49.5 5.6 34 15-48 4-40 (169)
346 1c9k_A COBU, adenosylcobinamid 95.5 0.0078 2.7E-07 52.0 3.5 32 18-50 2-33 (180)
347 2axn_A 6-phosphofructo-2-kinas 95.5 0.025 8.6E-07 58.1 7.9 38 14-51 34-74 (520)
348 2jeo_A Uridine-cytidine kinase 95.5 0.0092 3.2E-07 54.9 4.2 32 10-41 20-51 (245)
349 3e1t_A Halogenase; flavoprotei 95.5 0.095 3.2E-06 53.9 12.3 55 303-357 111-171 (512)
350 1np6_A Molybdopterin-guanine d 95.5 0.017 5.9E-07 49.8 5.6 35 13-47 4-41 (174)
351 1a7j_A Phosphoribulokinase; tr 95.5 0.0066 2.3E-07 57.3 3.2 38 15-52 5-45 (290)
352 2o8b_B DNA mismatch repair pro 95.5 0.048 1.6E-06 60.5 10.5 22 15-36 789-810 (1022)
353 2weu_A Tryptophan 5-halogenase 95.5 0.22 7.5E-06 51.1 14.9 55 303-358 173-230 (511)
354 2e1m_A L-glutamate oxidase; L- 95.5 0.0095 3.3E-07 58.4 4.2 61 292-354 309-369 (376)
355 4f4c_A Multidrug resistance pr 95.4 0.046 1.6E-06 62.9 10.4 29 11-39 440-468 (1321)
356 3c96_A Flavin-containing monoo 95.4 0.34 1.2E-05 48.0 15.7 59 304-363 108-175 (410)
357 3gmt_A Adenylate kinase; ssgci 95.4 0.014 4.7E-07 52.6 4.6 37 14-52 7-43 (230)
358 3dje_A Fructosyl amine: oxygen 95.4 0.031 1.1E-06 56.2 7.8 61 302-363 160-225 (438)
359 3b9q_A Chloroplast SRP recepto 95.3 0.019 6.4E-07 54.5 5.7 37 11-47 96-135 (302)
360 1g41_A Heat shock protein HSLU 95.3 0.0017 5.9E-08 64.7 -1.6 139 13-161 48-190 (444)
361 1rj9_A FTSY, signal recognitio 95.3 0.021 7.2E-07 54.2 5.9 26 14-39 101-126 (304)
362 3ozx_A RNAse L inhibitor; ATP 95.3 0.036 1.2E-06 57.1 7.9 27 13-39 292-318 (538)
363 4eaq_A DTMP kinase, thymidylat 95.2 0.015 5.2E-07 52.7 4.6 33 13-45 24-58 (229)
364 3lnc_A Guanylate kinase, GMP k 95.2 0.0064 2.2E-07 55.3 2.0 31 10-40 22-53 (231)
365 3p32_A Probable GTPase RV1496/ 95.2 0.054 1.8E-06 52.7 8.7 36 13-48 77-115 (355)
366 3hdt_A Putative kinase; struct 95.2 0.017 5.9E-07 52.0 4.7 31 15-45 14-44 (223)
367 2gza_A Type IV secretion syste 95.2 0.023 7.9E-07 55.5 6.0 73 12-84 172-262 (361)
368 2ffh_A Protein (FFH); SRP54, s 95.2 0.066 2.2E-06 53.1 9.2 73 14-86 97-192 (425)
369 3e2i_A Thymidine kinase; Zn-bi 95.2 0.0089 3E-07 53.0 2.6 33 14-47 27-63 (219)
370 3tif_A Uncharacterized ABC tra 95.1 0.0086 2.9E-07 54.6 2.6 29 11-39 27-55 (235)
371 3tqc_A Pantothenate kinase; bi 95.1 0.028 9.6E-07 53.6 6.3 39 13-51 90-133 (321)
372 2og2_A Putative signal recogni 95.1 0.023 7.9E-07 55.1 5.6 37 11-47 153-192 (359)
373 2gxq_A Heat resistant RNA depe 95.1 0.055 1.9E-06 47.9 7.9 24 15-38 38-62 (207)
374 2i3b_A HCR-ntpase, human cance 95.1 0.014 4.7E-07 51.2 3.6 23 17-39 3-25 (189)
375 2xau_A PRE-mRNA-splicing facto 95.1 0.061 2.1E-06 58.1 9.4 24 15-38 109-132 (773)
376 2cbz_A Multidrug resistance-as 95.0 0.0084 2.9E-07 54.8 2.2 29 11-39 27-55 (237)
377 3tqf_A HPR(Ser) kinase; transf 95.0 0.015 5E-07 49.5 3.4 25 14-38 15-39 (181)
378 1m8p_A Sulfate adenylyltransfe 95.0 0.019 6.5E-07 59.6 5.0 38 13-50 394-435 (573)
379 1gtv_A TMK, thymidylate kinase 95.0 0.0072 2.5E-07 54.2 1.6 24 17-40 2-25 (214)
380 1odf_A YGR205W, hypothetical 3 94.9 0.019 6.4E-07 54.2 4.3 40 12-51 28-73 (290)
381 2pcj_A ABC transporter, lipopr 94.9 0.0084 2.9E-07 54.3 1.9 29 11-39 26-54 (224)
382 3aez_A Pantothenate kinase; tr 94.9 0.019 6.5E-07 54.7 4.3 28 12-39 87-114 (312)
383 1sq5_A Pantothenate kinase; P- 94.9 0.031 1.1E-06 53.2 5.8 38 13-50 78-120 (308)
384 3qf4_A ABC transporter, ATP-bi 94.8 0.049 1.7E-06 56.9 7.6 29 11-39 365-393 (587)
385 1mv5_A LMRA, multidrug resista 94.8 0.0099 3.4E-07 54.6 2.1 30 10-39 23-52 (243)
386 1b0u_A Histidine permease; ABC 94.8 0.012 4.2E-07 54.6 2.6 29 11-39 28-56 (262)
387 4b3f_X DNA-binding protein smu 94.7 0.065 2.2E-06 56.8 8.4 55 17-81 207-264 (646)
388 1bif_A 6-phosphofructo-2-kinas 94.7 0.066 2.2E-06 54.3 8.1 34 14-47 38-74 (469)
389 2onk_A Molybdate/tungstate ABC 94.7 0.015 5.1E-07 53.2 2.9 28 11-39 21-48 (240)
390 2qm8_A GTPase/ATPase; G protei 94.7 0.084 2.9E-06 50.9 8.4 29 11-39 51-79 (337)
391 2ixe_A Antigen peptide transpo 94.7 0.012 4.1E-07 54.9 2.3 29 11-39 41-69 (271)
392 2zu0_C Probable ATP-dependent 94.7 0.016 5.4E-07 54.0 3.1 28 11-38 42-69 (267)
393 2pze_A Cystic fibrosis transme 94.7 0.01 3.5E-07 53.9 1.7 29 11-39 30-58 (229)
394 3v76_A Flavoprotein; structura 94.7 0.05 1.7E-06 54.3 6.9 58 300-358 129-187 (417)
395 2olj_A Amino acid ABC transpor 94.6 0.014 4.7E-07 54.2 2.6 29 11-39 46-74 (263)
396 1sgw_A Putative ABC transporte 94.6 0.011 3.6E-07 53.1 1.7 29 11-39 31-59 (214)
397 2aqj_A Tryptophan halogenase, 94.6 0.25 8.4E-06 51.1 12.4 55 303-358 165-222 (538)
398 1ewq_A DNA mismatch repair pro 94.6 0.1 3.5E-06 56.0 9.6 24 15-38 576-599 (765)
399 2uzz_A N-methyl-L-tryptophan o 94.6 0.06 2.1E-06 52.6 7.4 60 303-364 149-209 (372)
400 2ghi_A Transport protein; mult 94.6 0.013 4.4E-07 54.4 2.2 29 11-39 42-70 (260)
401 4edh_A DTMP kinase, thymidylat 94.6 0.041 1.4E-06 49.2 5.5 34 14-47 5-41 (213)
402 2d2e_A SUFC protein; ABC-ATPas 94.6 0.015 5.1E-07 53.6 2.6 28 11-38 25-52 (250)
403 1g6h_A High-affinity branched- 94.6 0.012 4.3E-07 54.4 2.1 29 11-39 29-57 (257)
404 1vpl_A ABC transporter, ATP-bi 94.6 0.015 5.1E-07 53.7 2.6 29 11-39 37-65 (256)
405 4f4c_A Multidrug resistance pr 94.6 0.083 2.8E-06 60.7 9.2 29 11-39 1101-1129(1321)
406 3gfo_A Cobalt import ATP-bindi 94.5 0.013 4.3E-07 54.8 2.1 29 11-39 30-58 (275)
407 2ff7_A Alpha-hemolysin translo 94.5 0.013 4.4E-07 53.9 2.1 29 11-39 31-59 (247)
408 1ji0_A ABC transporter; ATP bi 94.5 0.013 4.5E-07 53.6 2.1 29 11-39 28-56 (240)
409 2yz2_A Putative ABC transporte 94.5 0.016 5.4E-07 54.0 2.6 29 11-39 29-57 (266)
410 2qi9_C Vitamin B12 import ATP- 94.5 0.012 4.1E-07 54.1 1.7 30 11-40 22-51 (249)
411 1sky_E F1-ATPase, F1-ATP synth 94.5 0.017 5.9E-07 57.6 2.9 26 14-39 150-175 (473)
412 3cr8_A Sulfate adenylyltranfer 94.4 0.017 5.9E-07 59.5 2.9 39 13-51 367-409 (552)
413 2it1_A 362AA long hypothetical 94.4 0.019 6.6E-07 55.7 3.1 29 11-39 25-53 (362)
414 2yyz_A Sugar ABC transporter, 94.4 0.019 6.7E-07 55.6 3.1 29 11-39 25-53 (359)
415 1g8f_A Sulfate adenylyltransfe 94.4 0.027 9.2E-07 57.3 4.2 28 14-41 394-421 (511)
416 2ocp_A DGK, deoxyguanosine kin 94.4 0.032 1.1E-06 51.1 4.4 26 15-40 2-27 (241)
417 2rgh_A Alpha-glycerophosphate 94.4 2 6.9E-05 44.5 18.6 59 304-363 189-254 (571)
418 1v43_A Sugar-binding transport 94.3 0.02 6.9E-07 55.8 3.1 29 11-39 33-61 (372)
419 1z47_A CYSA, putative ABC-tran 94.3 0.017 6E-07 55.8 2.6 29 11-39 37-65 (355)
420 2ihy_A ABC transporter, ATP-bi 94.3 0.015 5.2E-07 54.4 2.1 29 11-39 43-71 (279)
421 3d31_A Sulfate/molybdate ABC t 94.3 0.017 5.8E-07 55.8 2.4 29 11-39 22-50 (348)
422 3sop_A Neuronal-specific septi 94.3 0.025 8.6E-07 52.7 3.5 24 16-39 3-26 (270)
423 3b85_A Phosphate starvation-in 94.3 0.02 6.9E-07 51.0 2.7 27 12-38 19-45 (208)
424 2dkh_A 3-hydroxybenzoate hydro 94.3 1.5 5E-05 46.3 17.5 61 303-363 141-217 (639)
425 2f1r_A Molybdopterin-guanine d 94.2 0.018 6.3E-07 49.5 2.3 24 16-39 3-26 (171)
426 2nq2_C Hypothetical ABC transp 94.2 0.016 5.4E-07 53.5 2.0 29 11-39 27-55 (253)
427 3kta_A Chromosome segregation 94.2 0.033 1.1E-06 48.3 4.0 24 17-40 28-51 (182)
428 2p67_A LAO/AO transport system 94.2 0.15 5.1E-06 49.3 8.9 36 12-47 53-91 (341)
429 1t6n_A Probable ATP-dependent 94.1 0.28 9.5E-06 43.8 10.2 24 16-39 52-75 (220)
430 1g29_1 MALK, maltose transport 94.1 0.021 7.2E-07 55.8 2.6 29 11-39 25-53 (372)
431 3k53_A Ferrous iron transport 94.1 0.068 2.3E-06 49.8 6.0 24 15-38 3-26 (271)
432 4i1u_A Dephospho-COA kinase; s 94.0 0.033 1.1E-06 49.4 3.4 34 15-51 9-42 (210)
433 2r0c_A REBC; flavin adenine di 94.0 0.66 2.3E-05 48.0 13.9 58 304-363 139-202 (549)
434 2i0z_A NAD(FAD)-utilizing dehy 93.9 0.11 3.7E-06 52.4 7.7 58 301-358 132-191 (447)
435 3tmk_A Thymidylate kinase; pho 93.9 0.068 2.3E-06 47.8 5.5 33 14-46 4-36 (216)
436 1qde_A EIF4A, translation init 93.9 0.087 3E-06 47.3 6.3 23 16-38 52-75 (224)
437 3iuy_A Probable ATP-dependent 93.9 0.11 3.6E-06 46.9 6.9 19 15-33 57-75 (228)
438 3gd7_A Fusion complex of cysti 93.9 0.026 9E-07 55.4 2.9 29 11-39 43-71 (390)
439 3vkw_A Replicase large subunit 93.9 0.031 1.1E-06 55.5 3.4 25 13-37 159-183 (446)
440 1oxx_K GLCV, glucose, ABC tran 93.9 0.019 6.4E-07 55.7 1.8 29 11-39 27-55 (353)
441 2ywl_A Thioredoxin reductase r 93.9 0.1 3.6E-06 44.9 6.5 52 304-357 57-109 (180)
442 1vec_A ATP-dependent RNA helic 93.9 0.094 3.2E-06 46.3 6.3 19 15-33 40-58 (206)
443 3v9p_A DTMP kinase, thymidylat 93.8 0.059 2E-06 48.6 4.9 26 14-39 24-49 (227)
444 4ag6_A VIRB4 ATPase, type IV s 93.8 0.064 2.2E-06 53.1 5.6 34 14-47 34-70 (392)
445 1oix_A RAS-related protein RAB 93.8 0.032 1.1E-06 48.9 3.1 24 16-39 30-53 (191)
446 2bbs_A Cystic fibrosis transme 93.8 0.022 7.5E-07 53.6 2.1 29 11-39 60-88 (290)
447 1z2a_A RAS-related protein RAB 93.8 0.036 1.2E-06 47.0 3.3 25 14-38 4-28 (168)
448 1p5z_B DCK, deoxycytidine kina 93.8 0.018 6E-07 53.6 1.3 28 13-40 22-49 (263)
449 2pjz_A Hypothetical protein ST 93.8 0.026 8.8E-07 52.3 2.4 28 11-39 27-54 (263)
450 1hv8_A Putative ATP-dependent 93.7 0.13 4.3E-06 50.0 7.6 24 16-39 45-68 (367)
451 2f9l_A RAB11B, member RAS onco 93.7 0.037 1.3E-06 48.8 3.3 23 16-38 6-28 (199)
452 3nh6_A ATP-binding cassette SU 93.7 0.023 7.9E-07 53.9 1.9 29 11-39 76-104 (306)
453 1nrj_B SR-beta, signal recogni 93.6 0.05 1.7E-06 48.6 4.1 27 13-39 10-36 (218)
454 2dyk_A GTP-binding protein; GT 93.6 0.044 1.5E-06 46.1 3.5 23 16-38 2-24 (161)
455 3ld9_A DTMP kinase, thymidylat 93.5 0.058 2E-06 48.5 4.1 29 13-41 19-47 (223)
456 2v6i_A RNA helicase; membrane, 93.5 0.28 9.7E-06 49.0 9.7 33 15-47 2-38 (431)
457 2ged_A SR-beta, signal recogni 93.5 0.056 1.9E-06 47.2 4.0 27 13-39 46-72 (193)
458 2gj8_A MNME, tRNA modification 93.4 0.044 1.5E-06 47.0 3.3 26 13-38 2-27 (172)
459 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.053 1.8E-06 45.4 3.5 23 17-39 25-47 (149)
460 3lv8_A DTMP kinase, thymidylat 93.3 0.057 2E-06 49.0 4.0 26 14-39 26-51 (236)
461 2pl3_A Probable ATP-dependent 93.3 0.15 5.2E-06 46.1 6.9 19 15-33 62-80 (236)
462 3fe2_A Probable ATP-dependent 93.3 0.21 7.3E-06 45.4 7.9 19 15-33 66-84 (242)
463 2wjg_A FEOB, ferrous iron tran 93.3 0.063 2.2E-06 46.6 4.1 23 16-38 8-30 (188)
464 1lw7_A Transcriptional regulat 93.3 0.048 1.6E-06 53.4 3.5 28 15-42 170-197 (365)
465 2wji_A Ferrous iron transport 93.3 0.048 1.6E-06 46.4 3.1 22 16-37 4-25 (165)
466 2qcu_A Aerobic glycerol-3-phos 93.2 1.6 5.6E-05 44.3 15.3 57 302-358 148-210 (501)
467 2v3a_A Rubredoxin reductase; a 93.2 0.21 7E-06 49.1 8.1 52 306-357 190-242 (384)
468 3a1s_A Iron(II) transport prot 93.2 0.11 3.8E-06 47.9 5.7 23 15-37 5-27 (258)
469 1u8z_A RAS-related protein RAL 93.1 0.053 1.8E-06 45.8 3.3 24 15-38 4-27 (168)
470 2zej_A Dardarin, leucine-rich 93.1 0.046 1.6E-06 47.4 2.9 22 16-37 3-24 (184)
471 2gqf_A Hypothetical protein HI 93.1 0.14 4.9E-06 50.6 6.8 55 302-357 108-167 (401)
472 1svi_A GTP-binding protein YSX 93.1 0.075 2.6E-06 46.4 4.3 26 12-37 20-45 (195)
473 1kao_A RAP2A; GTP-binding prot 93.1 0.054 1.8E-06 45.7 3.2 23 16-38 4-26 (167)
474 2qu8_A Putative nucleolar GTP- 93.1 0.45 1.5E-05 42.7 9.6 24 15-38 29-52 (228)
475 2lkc_A Translation initiation 93.1 0.069 2.4E-06 45.7 4.0 25 13-37 6-30 (178)
476 1upt_A ARL1, ADP-ribosylation 93.1 0.066 2.3E-06 45.5 3.8 25 14-38 6-30 (171)
477 2dpy_A FLII, flagellum-specifi 93.0 0.093 3.2E-06 52.5 5.3 33 10-42 152-184 (438)
478 2gks_A Bifunctional SAT/APS ki 93.0 0.081 2.8E-06 54.6 5.0 36 15-50 372-410 (546)
479 3iby_A Ferrous iron transport 93.0 0.14 4.8E-06 47.2 6.1 23 16-38 2-24 (256)
480 2p6r_A Afuhel308 helicase; pro 93.0 0.14 4.7E-06 55.0 7.0 34 14-47 39-75 (702)
481 1ek0_A Protein (GTP-binding pr 93.0 0.064 2.2E-06 45.4 3.5 24 16-39 4-27 (170)
482 2x3n_A Probable FAD-dependent 92.9 0.16 5.6E-06 50.1 7.0 61 303-363 107-172 (399)
483 2ce2_X GTPase HRAS; signaling 92.9 0.061 2.1E-06 45.3 3.4 24 16-39 4-27 (166)
484 2vp4_A Deoxynucleoside kinase; 92.9 0.056 1.9E-06 49.0 3.2 33 13-46 18-50 (230)
485 1yrb_A ATP(GTP)binding protein 92.9 0.13 4.6E-06 47.3 5.9 36 14-49 13-50 (262)
486 2npi_A Protein CLP1; CLP1-PCF1 92.9 0.047 1.6E-06 55.0 2.9 28 12-39 135-162 (460)
487 1ky3_A GTP-binding protein YPT 92.9 0.059 2E-06 46.3 3.2 25 14-38 7-31 (182)
488 2nzj_A GTP-binding protein REM 92.9 0.06 2E-06 46.0 3.2 23 15-37 4-26 (175)
489 2obl_A ESCN; ATPase, hydrolase 92.8 0.084 2.9E-06 51.0 4.5 32 11-42 67-98 (347)
490 1z0j_A RAB-22, RAS-related pro 92.8 0.067 2.3E-06 45.3 3.5 24 16-39 7-30 (170)
491 1wms_A RAB-9, RAB9, RAS-relate 92.8 0.068 2.3E-06 45.8 3.5 24 15-38 7-30 (177)
492 3nlc_A Uncharacterized protein 92.8 0.19 6.6E-06 51.8 7.4 57 302-358 219-277 (549)
493 3c5c_A RAS-like protein 12; GD 92.8 0.062 2.1E-06 46.7 3.2 25 14-38 20-44 (187)
494 1z08_A RAS-related protein RAB 92.8 0.07 2.4E-06 45.3 3.5 24 15-38 6-29 (170)
495 3ice_A Transcription terminati 92.7 0.13 4.5E-06 49.8 5.6 38 11-48 170-212 (422)
496 1r8s_A ADP-ribosylation factor 92.7 0.078 2.7E-06 44.7 3.7 23 17-39 2-24 (164)
497 1c1y_A RAS-related protein RAP 92.7 0.073 2.5E-06 44.9 3.5 23 16-38 4-26 (167)
498 1pui_A ENGB, probable GTP-bind 92.7 0.041 1.4E-06 48.8 2.0 28 10-37 21-48 (210)
499 3dkp_A Probable ATP-dependent 92.7 0.25 8.5E-06 45.0 7.3 18 15-32 66-83 (245)
500 1g16_A RAS-related protein SEC 92.7 0.07 2.4E-06 45.2 3.4 23 16-38 4-26 (170)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-41 Score=330.04 Aligned_cols=222 Identities=40% Similarity=0.676 Sum_probs=202.5
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++| |.++|+|+|||||||||||++|+++|++++.+|+.++++++.+++.|++++.++.+|..++...|+||
T Consensus 166 ~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~II 245 (405)
T 4b4t_J 166 LPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSII 245 (405)
T ss_dssp HHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceE
Confidence 689999998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCC--CChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGD--NNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||+|.+++++..... .....+.+..|+..++++....+++||+|||.++.||++++|||||++.|+|+.|+.++|.
T Consensus 246 FiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~ 325 (405)
T 4b4t_J 246 FMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARA 325 (405)
T ss_dssp EEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHH
T ss_pred eeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHH
Confidence 99999999988765432 2345678899999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
+||+.++++. .+.+++++..+| +.|+|||++||.++|+.|...|+++.. ..|+.+||.+
T Consensus 326 ~Il~~~~~~~---~l~~dvdl~~lA--~~t~G~SGADi~~l~~eA~~~Air~~~----------------~~vt~~Df~~ 384 (405)
T 4b4t_J 326 EILRIHSRKM---NLTRGINLRKVA--EKMNGCSGADVKGVCTEAGMYALRERR----------------IHVTQEDFEL 384 (405)
T ss_dssp HHHHHHHTTS---BCCSSCCHHHHH--HHCCSCCHHHHHHHHHHHHHHHHHTTC----------------SBCCHHHHHH
T ss_pred HHHHHHhcCC---CCCccCCHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHcCC----------------CCcCHHHHHH
Confidence 9999999875 356788999999 999999999999999999999986532 3499999999
Q ss_pred HHHhcCCC
Q psy7673 237 ALKRIKPS 244 (541)
Q Consensus 237 al~~~~~~ 244 (541)
|++++.+.
T Consensus 385 Al~~v~~~ 392 (405)
T 4b4t_J 385 AVGKVMNK 392 (405)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhCc
Confidence 99987543
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-40 Score=322.85 Aligned_cols=224 Identities=37% Similarity=0.642 Sum_probs=203.2
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++| |.++|+|+|||||||||||++|+++|++++.+|+.++++++.+++.|++++.++.+|..++...|+||
T Consensus 200 ~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~II 279 (437)
T 4b4t_I 200 LPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIV 279 (437)
T ss_dssp HHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEE
Confidence 578899987 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCC--CChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGD--NNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||+|.+++.+..... .....+.+..|+..++......+++||+|||.++.||++++|+|||++.|+|+.|+.++|.
T Consensus 280 fiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~ 359 (437)
T 4b4t_I 280 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKK 359 (437)
T ss_dssp EEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHH
T ss_pred EEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHH
Confidence 99999999998855433 3345678889999999888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
+||+.++.+. .+.++++++.+| ..|+|||++||.++|++|...|+++.. ..|+.+||.+
T Consensus 360 ~Il~~~l~~~---~l~~dvdl~~LA--~~T~GfSGADI~~l~~eA~~~Air~~~----------------~~It~eDf~~ 418 (437)
T 4b4t_I 360 KILGIHTSKM---NLSEDVNLETLV--TTKDDLSGADIQAMCTEAGLLALRERR----------------MQVTAEDFKQ 418 (437)
T ss_dssp HHHHHHHTTS---CBCSCCCHHHHH--HHCCSCCHHHHHHHHHHHHHHHHHTTC----------------SCBCHHHHHH
T ss_pred HHHHHHhcCC---CCCCcCCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcCC----------------CccCHHHHHH
Confidence 9999999875 356788999999 899999999999999999999986633 2499999999
Q ss_pred HHHhcCCCCC
Q psy7673 237 ALKRIKPSVS 246 (541)
Q Consensus 237 al~~~~~~~s 246 (541)
|++++.++.+
T Consensus 419 Al~rv~~~~~ 428 (437)
T 4b4t_I 419 AKERVMKNKV 428 (437)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHhCCCC
Confidence 9998866543
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-39 Score=323.61 Aligned_cols=224 Identities=41% Similarity=0.681 Sum_probs=203.5
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++| |.++|+|+|||||||||||++|+++|++++.+++.++++++.+++.++++..++.+|..+....|+||
T Consensus 199 ~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~Ii 278 (437)
T 4b4t_L 199 LPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCII 278 (437)
T ss_dssp HHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEE
T ss_pred HHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCcee
Confidence 688999998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCC--CChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGD--NNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||+|.+++++...+. .....+.+..|+..++++.+..+++||+|||.++.||++++|+|||++.|+|+.|+.++|.
T Consensus 279 fiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~ 358 (437)
T 4b4t_L 279 FMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRL 358 (437)
T ss_dssp EEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHH
T ss_pred eeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHH
Confidence 99999999988755333 3345678899999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
+||+.++.+. ....++|+..++ +.|+|||++||.++|+.|...|+++.. ..|+.+||.+
T Consensus 359 ~Il~~~~~~~---~~~~d~dl~~lA--~~t~G~sGADi~~l~~eA~~~air~~~----------------~~i~~~d~~~ 417 (437)
T 4b4t_L 359 EIFKIHTAKV---KKTGEFDFEAAV--KMSDGFNGADIRNCATEAGFFAIRDDR----------------DHINPDDLMK 417 (437)
T ss_dssp HHHHHHHHTS---CBCSCCCHHHHH--HTCCSCCHHHHHHHHHHHHHHHHHTTC----------------SSBCHHHHHH
T ss_pred HHHHHHhcCC---CCCcccCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcCC----------------CCCCHHHHHH
Confidence 9999999875 345678999999 999999999999999999999986532 2499999999
Q ss_pred HHHhcCCCCC
Q psy7673 237 ALKRIKPSVS 246 (541)
Q Consensus 237 al~~~~~~~s 246 (541)
|++++.++..
T Consensus 418 Al~~v~~~~k 427 (437)
T 4b4t_L 418 AVRKVAEVKK 427 (437)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHhccC
Confidence 9998877644
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-39 Score=323.91 Aligned_cols=224 Identities=34% Similarity=0.624 Sum_probs=204.2
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++| |.++|+|+|||||||||||++|+++|++++.+++.++++++.+++.|++++.++.+|..++...|+||
T Consensus 199 ~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~Ii 278 (434)
T 4b4t_M 199 LPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTII 278 (434)
T ss_dssp HHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEE
Confidence 688899998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCC--ChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDN--NSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||+|.+++.+...... ....+.+..|+..++++....+++||+|||.++.||++++|+|||++.|+|+.|+.++|.
T Consensus 279 fiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~ 358 (434)
T 4b4t_M 279 FIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRA 358 (434)
T ss_dssp EEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHH
T ss_pred eecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHH
Confidence 999999999887553222 234567889999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
+||+.++++. .+..++++..+| +.|+|||++||.++|+.|...|+++.. ..|+.+||.+
T Consensus 359 ~Il~~~~~~~---~~~~dvdl~~lA--~~t~G~sGADi~~l~~eA~~~a~r~~~----------------~~i~~~Df~~ 417 (434)
T 4b4t_M 359 QILQIHSRKM---TTDDDINWQELA--RSTDEFNGAQLKAVTVEAGMIALRNGQ----------------SSVKHEDFVE 417 (434)
T ss_dssp HHHHHHHHHS---CBCSCCCHHHHH--HHCSSCCHHHHHHHHHHHHHHHHHHTC----------------SSBCHHHHHH
T ss_pred HHHHHHhcCC---CCCCcCCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcCC----------------CCcCHHHHHH
Confidence 9999999875 355788999999 899999999999999999999987643 2499999999
Q ss_pred HHHhcCCCCC
Q psy7673 237 ALKRIKPSVS 246 (541)
Q Consensus 237 al~~~~~~~s 246 (541)
|+++++|+.+
T Consensus 418 Al~~v~~~~~ 427 (434)
T 4b4t_M 418 GISEVQARKS 427 (434)
T ss_dssp HHHSCSSSCC
T ss_pred HHHHHhCCCC
Confidence 9999998754
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-39 Score=318.55 Aligned_cols=221 Identities=39% Similarity=0.661 Sum_probs=200.8
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++| |.++|+|+|||||||||||++|+++|++++.+|+.++++++.+++.|++++.++.+|..++...|+||
T Consensus 227 ~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~II 306 (467)
T 4b4t_H 227 LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACII 306 (467)
T ss_dssp HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceE
Confidence 578899987 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCC--ChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDN--NSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||+|.++..+...... ....+.+..++..++......+++||+|||.++.||++++|+|||++.|+|+.|+.++|.
T Consensus 307 fiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~ 386 (467)
T 4b4t_H 307 FFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRA 386 (467)
T ss_dssp EEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHH
T ss_pred eecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHH
Confidence 999999999887654332 344667888999999988888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
+||+.+++.. .+..+++++.++ +.|+|||++||.++|++|...|+++.. ..|+.+||.+
T Consensus 387 ~Ilk~~l~~~---~l~~dvdl~~LA--~~T~GfSGADI~~l~~eAa~~Air~~~----------------~~it~~Df~~ 445 (467)
T 4b4t_H 387 NIFRIHSKSM---SVERGIRWELIS--RLCPNSTGAELRSVCTEAGMFAIRARR----------------KVATEKDFLK 445 (467)
T ss_dssp HHHHHHHTTS---CBCSSCCHHHHH--HHCCSCCHHHHHHHHHHHHHHHHHHTC----------------SSBCHHHHHH
T ss_pred HHHHHHhcCC---CCCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHcCC----------------CccCHHHHHH
Confidence 9999999875 355788999999 899999999999999999999987643 2499999999
Q ss_pred HHHhcCC
Q psy7673 237 ALKRIKP 243 (541)
Q Consensus 237 al~~~~~ 243 (541)
|++++.+
T Consensus 446 Al~kV~~ 452 (467)
T 4b4t_H 446 AVDKVIS 452 (467)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988743
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-38 Score=315.03 Aligned_cols=224 Identities=37% Similarity=0.630 Sum_probs=201.7
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++| |.++|+|+|||||||||||++|+++|++++.+++.++++++.+.+.|+++..++.+|..++...|+||
T Consensus 190 ~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~Ii 269 (428)
T 4b4t_K 190 LPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSII 269 (428)
T ss_dssp HHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCee
Confidence 578889987 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCC--CCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEec-CCCHHHH
Q psy7673 79 FFDEIDALCPKRSSLG--DNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVN-LPNEQDR 155 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~-~p~~~~r 155 (541)
||||+|.++..+.... ......++++.|+..++++....+++||+|||.++.||++++|+|||++.|+|+ .|+.++|
T Consensus 270 fiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R 349 (428)
T 4b4t_K 270 FIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRER 349 (428)
T ss_dssp EEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHH
T ss_pred echhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHH
Confidence 9999999998875432 234567889999999999988889999999999999999999999999999996 8999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHH
Q psy7673 156 KEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFD 235 (541)
Q Consensus 156 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 235 (541)
..||+.++++. .+..+++++.+| ..|+|||++||.++|++|...|+++.. ..|+.+||.
T Consensus 350 ~~Il~~~~~~~---~l~~~~dl~~lA--~~t~G~sgadi~~l~~eA~~~a~r~~~----------------~~i~~~d~~ 408 (428)
T 4b4t_K 350 RLIFGTIASKM---SLAPEADLDSLI--IRNDSLSGAVIAAIMQEAGLRAVRKNR----------------YVILQSDLE 408 (428)
T ss_dssp HHHHHHHHHSS---CBCTTCCHHHHH--HHTTTCCHHHHHHHHHHHHHHHHHTTC----------------SSBCHHHHH
T ss_pred HHHHHHHhcCC---CCCcccCHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHCCC----------------CCCCHHHHH
Confidence 99999999875 355788999999 899999999999999999999987633 249999999
Q ss_pred HHHHh-cCCCCC
Q psy7673 236 IALKR-IKPSVS 246 (541)
Q Consensus 236 ~al~~-~~~~~s 246 (541)
+|+.. ++++.+
T Consensus 409 ~A~~~~~~~~~~ 420 (428)
T 4b4t_K 409 EAYATQVKTDNT 420 (428)
T ss_dssp HHHHHHSCSCCC
T ss_pred HHHHHhhCccCC
Confidence 99976 455544
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.2e-38 Score=339.35 Aligned_cols=259 Identities=44% Similarity=0.775 Sum_probs=172.9
Q ss_pred CCCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCce
Q psy7673 1 MFPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 1 ~~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
.||+.+|++| |.++++++|||||||||||++++++|.+++.+++.++++++.++|.|++++.++.+|..++...|+|
T Consensus 494 ~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~I 573 (806)
T 3cf2_A 494 QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573 (806)
T ss_dssp TTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEE
T ss_pred HhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCce
Confidence 4799999988 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCccccCCCCCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHH
Q psy7673 78 IFFDEIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDR 155 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r 155 (541)
|||||+|.+++.+... .......++++.|+..++++....+++||++||.|+.||++++|+|||++.|+++.|+.++|
T Consensus 574 ifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R 653 (806)
T 3cf2_A 574 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp EECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHH
T ss_pred eechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHH
Confidence 9999999999887543 22334568999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCC--------cC-CCCCccc
Q psy7673 156 KEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD--------QA-GIDDTEQ 226 (541)
Q Consensus 156 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~--------~~-~~~~~~~ 226 (541)
.+||+.++++. .+..++++..++ +.|+|||++||.++|+.|...|+++......... .. .......
T Consensus 654 ~~il~~~l~~~---~~~~~~dl~~la--~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (806)
T 3cf2_A 654 VAILKANLRKS---PVAKDVDLEFLA--KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728 (806)
T ss_dssp HHTTTTTSSCC-----CCC------------------CHHHHHHHHHHHHHHHHHC-----------------------C
T ss_pred HHHHHHHhcCC---CCCCCCCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcccccccccccc
Confidence 99999988764 355788999999 8999999999999999999999988654321100 00 0112234
Q ss_pred cccCHHHHHHHHHhcCCCCChhhhhhhHHHhhhhcCcc
Q psy7673 227 VTIGFRHFDIALKRIKPSVSKADCKNYESLKQRYTTPG 264 (541)
Q Consensus 227 ~~i~~~d~~~al~~~~~~~s~~~~~~~e~~~~~~~~~~ 264 (541)
..|+.+||.+|++.++|+++.++++.|++|.+.|....
T Consensus 729 ~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~~ 766 (806)
T 3cf2_A 729 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSR 766 (806)
T ss_dssp CC----CCTTTC---------------CCCC-------
T ss_pred CccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccc
Confidence 57999999999999999999999999999999887653
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.8e-36 Score=322.59 Aligned_cols=237 Identities=43% Similarity=0.719 Sum_probs=210.7
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++| |..+|+++|||||||||||++++++|++++.+++.++|.++.+++.++.+..++.+|..++.+.|+||
T Consensus 222 ~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsII 301 (806)
T 3cf2_A 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII 301 (806)
T ss_dssp HHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEE
T ss_pred HHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEE
Confidence 588899998 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
||||+|.|++++... .....+++++.|+..++++..+.+++||++||+++.||++++|+|||++.|+++.|+.++|.+|
T Consensus 302 fIDEiDal~~~r~~~-~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~I 380 (806)
T 3cf2_A 302 FIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp EEESGGGTCCTTTTC-CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHH
T ss_pred EEehhcccccccCCC-CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHH
Confidence 999999999987664 4456688999999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCC-CCCccccccCHHHHHHH
Q psy7673 159 LLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAG-IDDTEQVTIGFRHFDIA 237 (541)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~-~~~~~~~~i~~~d~~~a 237 (541)
|+.++.+. ....++++..++ ..|+||+++||.++|++|...|+.+..+.+...+... .+......++.+||..|
T Consensus 381 L~~~l~~~---~~~~dvdl~~lA--~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~A 455 (806)
T 3cf2_A 381 LQIHTKNM---KLADDVDLEQVA--NETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 455 (806)
T ss_dssp HHHTCSSS---EECTTCCHHHHH--HHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHH
T ss_pred HHHHhcCC---CCCcccCHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHH
Confidence 99988764 355789999999 9999999999999999999999998776543322111 11223567999999999
Q ss_pred HHhcCCC
Q psy7673 238 LKRIKPS 244 (541)
Q Consensus 238 l~~~~~~ 244 (541)
++.++|+
T Consensus 456 l~~~~ps 462 (806)
T 3cf2_A 456 LSQSNPS 462 (806)
T ss_dssp HSSSSCC
T ss_pred HHhCCCc
Confidence 9999987
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=275.21 Aligned_cols=255 Identities=31% Similarity=0.614 Sum_probs=215.6
Q ss_pred CCCCchhhcC--CCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLFG--KSTPSGVLLCGPPGCGKTLLAKAVANEA-GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~ll~G~~G~GKT~l~~~~a~~~-~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++|. ..+++++||+||||||||++++++|+++ +.+++.+++.++.+.+.++.+..++.+|..+...+|+||
T Consensus 30 ~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl 109 (322)
T 1xwi_A 30 LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSII 109 (322)
T ss_dssp HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEE
T ss_pred HHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 4677888883 5677999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC-CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKE 157 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 157 (541)
||||+|.+.+.+... ......++++.|+..++++. ...+++||++||.++.++++++| ||+..+.++.|+.++|.+
T Consensus 110 ~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~ 186 (322)
T 1xwi_A 110 FIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAA 186 (322)
T ss_dssp EEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHH
T ss_pred EeecHHHhccccccc-cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHH
Confidence 999999999877653 44556788899999999875 35679999999999999999999 999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhccc-----CCC---------------
Q psy7673 158 ILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVE-----NDD--------------- 217 (541)
Q Consensus 158 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~-----~~~--------------- 217 (541)
|++.++..... ...+.++..++ +.+.||+++||..+|++|...++++...... ...
T Consensus 187 il~~~l~~~~~--~l~~~~l~~la--~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (322)
T 1xwi_A 187 MFKLHLGTTQN--SLTEADFRELG--RKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPC 262 (322)
T ss_dssp HHHHHHTTCCB--CCCHHHHHHHH--HTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEEC
T ss_pred HHHHHHhcCCC--CCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccc
Confidence 99999986431 22456678888 8999999999999999999999988764210 000
Q ss_pred ----c-------CCC--CCccccccCHHHHHHHHHhcCCCCChhhhhhhHHHhhhhcCc
Q psy7673 218 ----Q-------AGI--DDTEQVTIGFRHFDIALKRIKPSVSKADCKNYESLKQRYTTP 263 (541)
Q Consensus 218 ----~-------~~~--~~~~~~~i~~~d~~~al~~~~~~~s~~~~~~~e~~~~~~~~~ 263 (541)
. ..+ +.....+|+.+||.+|++.++|+++.++++.|++|.+.|+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 321 (322)
T 1xwi_A 263 SPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQE 321 (322)
T ss_dssp CSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCSC
T ss_pred cccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccC
Confidence 0 000 011234799999999999999999999999999999999863
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.7e-33 Score=276.01 Aligned_cols=256 Identities=35% Similarity=0.607 Sum_probs=212.4
Q ss_pred CCCCchhhc--CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEE
Q psy7673 2 FPVKYPKLF--GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIF 79 (541)
Q Consensus 2 ~~~~~~~~~--~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~ 79 (541)
+|+.+|+++ +..++.++||+||||||||++++++|++++.+++.++|.++.+.+.++.+..++.+|..+....|+|||
T Consensus 36 ~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~ 115 (322)
T 3eie_A 36 LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIF 115 (322)
T ss_dssp HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEE
Confidence 356677777 456788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC-CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 80 FDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 80 iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
|||+|.+.+.+... ......++.+.++..++... ...+++||++||.++.+++++++ ||...+.++.|+.++|.+|
T Consensus 116 iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~i 192 (322)
T 3eie_A 116 IDQVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTM 192 (322)
T ss_dssp EECGGGGSCC-------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHH
T ss_pred echhhhhhccCCCC-cchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHH
Confidence 99999998876543 34456778889999998764 45679999999999999999999 9999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCC---------------------
Q psy7673 159 LLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD--------------------- 217 (541)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~--------------------- 217 (541)
++.++.... ....+.++..++ ..+.||+++||.++|+.|...++++..+.+....
T Consensus 193 l~~~~~~~~--~~~~~~~l~~la--~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (322)
T 3eie_A 193 FEINVGDTP--CVLTKEDYRTLG--AMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGA 268 (322)
T ss_dssp HHHHHTTCC--CCCCHHHHHHHH--HTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTE
T ss_pred HHHHhccCC--CCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccc
Confidence 999998643 223455677888 8999999999999999999999999876421100
Q ss_pred ------cCCCCCccccccCHHHHHHHHHhcCCCCChhhhhhhHHHhhhhcCcc
Q psy7673 218 ------QAGIDDTEQVTIGFRHFDIALKRIKPSVSKADCKNYESLKQRYTTPG 264 (541)
Q Consensus 218 ------~~~~~~~~~~~i~~~d~~~al~~~~~~~s~~~~~~~e~~~~~~~~~~ 264 (541)
....+......|+.+||.+|++.++|+++.++...|++|.+.|+..+
T Consensus 269 ~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~~ 321 (322)
T 3eie_A 269 IEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 321 (322)
T ss_dssp EEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC---
T ss_pred ccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 00111223467999999999999999999999999999999998743
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=4.4e-33 Score=270.24 Aligned_cols=253 Identities=45% Similarity=0.796 Sum_probs=210.8
Q ss_pred CCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEE
Q psy7673 3 PVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIF 79 (541)
Q Consensus 3 ~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~ 79 (541)
|+.+|+.| |..++.++||+||||||||+++++++++++.+++.++|.++.+.+.+.....++.+|..+....|++||
T Consensus 34 ~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~ 113 (301)
T 3cf0_A 34 PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLF 113 (301)
T ss_dssp HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEE
T ss_pred HhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEE
Confidence 45567765 788999999999999999999999999999999999999998888888888899999999988999999
Q ss_pred EcCCccccCCCCCCC--CCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHH
Q psy7673 80 FDEIDALCPKRSSLG--DNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKE 157 (541)
Q Consensus 80 iDe~d~l~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 157 (541)
|||+|.+.+.+.... ......++++.|+..++++....+++||++||.++.++++++++|||...++++.|+.++|.+
T Consensus 114 iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 193 (301)
T 3cf0_A 114 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 193 (301)
T ss_dssp ECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred EEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHH
Confidence 999999987654321 122335677889999988777778999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCC------c--CCC-CCccccc
Q psy7673 158 ILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD------Q--AGI-DDTEQVT 228 (541)
Q Consensus 158 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~------~--~~~-~~~~~~~ 228 (541)
|++.++.... ...++++..++ ..+.||+++||.++|++|...|..+......... . ... .......
T Consensus 194 il~~~l~~~~---~~~~~~~~~la--~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (301)
T 3cf0_A 194 ILKANLRKSP---VAKDVDLEFLA--KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPE 268 (301)
T ss_dssp HHHHHHTTSC---BCSSCCHHHHH--HTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCC
T ss_pred HHHHHHccCC---CCccchHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCc
Confidence 9999998753 34678888888 7899999999999999999999887653211000 0 000 0112357
Q ss_pred cCHHHHHHHHHhcCCCCChhhhhhhHHHhhhh
Q psy7673 229 IGFRHFDIALKRIKPSVSKADCKNYESLKQRY 260 (541)
Q Consensus 229 i~~~d~~~al~~~~~~~s~~~~~~~e~~~~~~ 260 (541)
|+.+||.+|++.++|+.+.+++..|++|.++|
T Consensus 269 v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 269 IRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp BCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999876
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.1e-32 Score=272.99 Aligned_cols=256 Identities=35% Similarity=0.614 Sum_probs=205.3
Q ss_pred CCCCchhhc--CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEE
Q psy7673 2 FPVKYPKLF--GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIF 79 (541)
Q Consensus 2 ~~~~~~~~~--~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~ 79 (541)
+|+.+|+++ +..++.++||+||||||||++++++|++++.+++.++|.++.+.+.+..+..++.+|..+....|+|||
T Consensus 69 ~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~ 148 (355)
T 2qp9_X 69 LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIF 148 (355)
T ss_dssp HHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEE
Confidence 355677777 456788999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCC-CCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 80 FDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEG-RGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 80 iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
|||+|.+.+.+... ......++.+.|+..++.+.. ..+++||++||.++.+++++++ ||+..+.++.|+.++|.+|
T Consensus 149 iDEid~l~~~r~~~-~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~i 225 (355)
T 2qp9_X 149 IDQVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTM 225 (355)
T ss_dssp EECGGGGTC-------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHH
T ss_pred EechHhhcccCCCC-cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHH
Confidence 99999998776443 344567788889998887643 4679999999999999999999 9999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhccc-----CC-------------C---
Q psy7673 159 LLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVE-----ND-------------D--- 217 (541)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~-----~~-------------~--- 217 (541)
++.++.... ....+.++..++ +.+.||+++||.++|++|...|+.+...... .. +
T Consensus 226 l~~~l~~~~--~~~~~~~l~~la--~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
T 2qp9_X 226 FEINVGDTP--SVLTKEDYRTLG--AMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGA 301 (355)
T ss_dssp HHHHHTTSC--BCCCHHHHHHHH--HHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSE
T ss_pred HHHHHhhCC--CCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccch
Confidence 999998643 122456677788 8999999999999999999999988654310 00 0
Q ss_pred ------cCCCCCccccccCHHHHHHHHHhcCCCCChhhhhhhHHHhhhhcCcc
Q psy7673 218 ------QAGIDDTEQVTIGFRHFDIALKRIKPSVSKADCKNYESLKQRYTTPG 264 (541)
Q Consensus 218 ------~~~~~~~~~~~i~~~d~~~al~~~~~~~s~~~~~~~e~~~~~~~~~~ 264 (541)
....+.....+|+.+||.+|++.++|+++.+++..|++|.+.|+..+
T Consensus 302 ~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~~~ 354 (355)
T 2qp9_X 302 IEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 354 (355)
T ss_dssp EECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC---
T ss_pred hhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCC
Confidence 00001112357999999999999999999999999999999998754
No 13
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=283.60 Aligned_cols=243 Identities=38% Similarity=0.624 Sum_probs=215.9
Q ss_pred cccccccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc-EEEEecCceeEeeCEEEEcCChhHHHhhhcccCc
Q psy7673 291 EKWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG-VKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHP 368 (541)
Q Consensus 291 ~~~~~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~ 368 (541)
.+..+|.+.+||+.++++|++.+ ..|++|+++++|++|.+++++ |.|++++ .++.||+||+|+|++++.+++++..+
T Consensus 222 ~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~~-~~~~ad~vv~a~p~~~~~~ll~~~~~ 300 (477)
T 3nks_A 222 ERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRD-SSLEADHVISAIPASVLSELLPAEAA 300 (477)
T ss_dssp TTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECSS-CEEEESEEEECSCHHHHHHHSCGGGH
T ss_pred cCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEECC-eEEEcCEEEECCCHHHHHHhccccCH
Confidence 34567999999999999999999 567899999999999998777 8887754 47999999999999999999988777
Q ss_pred hhHhhhcCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccC----CCcEEEEEEecCccCCcccC-
Q psy7673 369 TLGNLLSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQ----ADWTILTVMMGGAWYDTYFK- 443 (541)
Q Consensus 369 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~----~~~~~l~~~~~g~~~~~~~~- 443 (541)
.+.+.+.++.|.+++++++.|++++|+..++|++++..++..+.+++|+|++|+. .+.+++++|++|.|+.++..
T Consensus 301 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~ 380 (477)
T 3nks_A 301 PLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEAS 380 (477)
T ss_dssp HHHHHHHTCCEEEEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHS
T ss_pred HHHHHHhcCCCCcEEEEEEEECCCCCCCCCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccc
Confidence 8888999999999999999999888888899999998878889999999999864 25789999999887765421
Q ss_pred --CCCHHHHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHH
Q psy7673 444 --GQSKEYILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVI 521 (541)
Q Consensus 444 --~~~~e~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai 521 (541)
..+++++++.++++|++++|...+|.+..+++|++|+|+|++||..++..+++.+....++|++||||+.|.||++|+
T Consensus 381 ~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G~gv~~a~ 460 (477)
T 3nks_A 381 GCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCI 460 (477)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSCCSHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCCcHHHHH
Confidence 258999999999999999999888999999999999999999999999999877766556899999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy7673 522 ALSKKAVESIKWQ 534 (541)
Q Consensus 522 ~sg~~aa~~i~~~ 534 (541)
.||+++|++|+.+
T Consensus 461 ~sg~~aA~~il~~ 473 (477)
T 3nks_A 461 ESGRQAAVSVLGT 473 (477)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999654
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.5e-32 Score=259.08 Aligned_cols=242 Identities=60% Similarity=1.008 Sum_probs=192.8
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|+.| +...++|++|+||||||||++++++|..++..++.+++.++...+.++.+..+..+|..+....|+++
T Consensus 28 ~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 28 APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 567777776 78889999999999999999999999999999999999999888888888899999999888889999
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
++||+|.+...+... ......+..+.++..+++......+++++++|.|+.+|++++|+|||++.|+++.|+.++|.+|
T Consensus 108 ~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~i 186 (274)
T 2x8a_A 108 FFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAI 186 (274)
T ss_dssp EEETCTTTCC----------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHH
T ss_pred eeehhhhhhcccCCC-cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHH
Confidence 999999987654321 1112345678888899988777789999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHH
Q psy7673 159 LLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIAL 238 (541)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 238 (541)
|+.++..........++++..++....++||++.||.++|++|...|+++....... ........|+.+||.+|+
T Consensus 187 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~-----~~~~~~~~i~~~df~~al 261 (274)
T 2x8a_A 187 LKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS-----GNEKGELKVSHKHFEEAF 261 (274)
T ss_dssp HHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC----------------CCBCHHHHHHHH
T ss_pred HHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc-----cccccCCeecHHHHHHHH
Confidence 999887543334567889999993223669999999999999999998875432111 111233479999999999
Q ss_pred HhcCCCCChhh
Q psy7673 239 KRIKPSVSKAD 249 (541)
Q Consensus 239 ~~~~~~~s~~~ 249 (541)
+.++|+.+.++
T Consensus 262 ~~~~ps~~~~~ 272 (274)
T 2x8a_A 262 KKVRSSISKKD 272 (274)
T ss_dssp TTCCCCC----
T ss_pred HHhcCCCChhh
Confidence 99999987654
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.98 E-value=8.7e-32 Score=274.37 Aligned_cols=255 Identities=31% Similarity=0.601 Sum_probs=205.4
Q ss_pred CCCCchhhcC--CCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLFG--KSTPSGVLLCGPPGCGKTLLAKAVANEA-GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~ll~G~~G~GKT~l~~~~a~~~-~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+|++|. ..+++++||+||||||||++++++|+++ +.+++.+++.++.+.+.+.....++.+|..+....|+||
T Consensus 152 ~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl 231 (444)
T 2zan_A 152 LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSII 231 (444)
T ss_dssp HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEE
T ss_pred HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEE
Confidence 4667788873 5678999999999999999999999999 899999999999998888888889999999998899999
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCC-CCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEG-RGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKE 157 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 157 (541)
||||+|.+.+.+... ......++++.|+..++++.. ..+++||++||.++.++++++| ||+..+.++.|+.++|..
T Consensus 232 ~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~ 308 (444)
T 2zan_A 232 FIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAA 308 (444)
T ss_dssp EESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHH
T ss_pred EEechHhhccCCCCc-cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHH
Confidence 999999998876553 445567888999999887653 5679999999999999999999 999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcc-----cCCC---------------
Q psy7673 158 ILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSV-----ENDD--------------- 217 (541)
Q Consensus 158 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~-----~~~~--------------- 217 (541)
|++.++..... ...+.++..++ ..+.||+++||..+|+.|...++++..... ....
T Consensus 309 il~~~l~~~~~--~l~~~~l~~la--~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (444)
T 2zan_A 309 MFRLHLGSTQN--SLTEADFQELG--RKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPC 384 (444)
T ss_dssp HHHHHHTTSCE--ECCHHHHHHHH--HHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEE
T ss_pred HHHHHHhcCCC--CCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence 99999986431 12456677888 899999999999999999999999876431 0000
Q ss_pred -------------cCCCCCccccccCHHHHHHHHHhcCCCCChhhhhhhHHHhhhhcCc
Q psy7673 218 -------------QAGIDDTEQVTIGFRHFDIALKRIKPSVSKADCKNYESLKQRYTTP 263 (541)
Q Consensus 218 -------------~~~~~~~~~~~i~~~d~~~al~~~~~~~s~~~~~~~e~~~~~~~~~ 263 (541)
....+.....+|+.+||.+|++.++|+++.+++..|++|...|+..
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~~ 443 (444)
T 2zan_A 385 SPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQE 443 (444)
T ss_dssp CTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTTT
T ss_pred CCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 0000111235799999999999999999999999999999998763
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.97 E-value=6.8e-31 Score=268.81 Aligned_cols=257 Identities=42% Similarity=0.712 Sum_probs=205.2
Q ss_pred CCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEE
Q psy7673 4 VKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 4 ~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
+.+|++| |..++.++||+||||||||+++++++++++.+++.++|.++.+.+.++....++.+|..+....|++|||
T Consensus 224 l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfL 303 (489)
T 3hu3_A 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303 (489)
T ss_dssp HHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred hhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEe
Confidence 4456665 6889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHH
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILL 160 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~ 160 (541)
||+|.+.++++.. ......+++..|+..++......+++||++||.++.+++++++++||...+.++.|+.++|.+||+
T Consensus 304 DEId~l~~~~~~~-~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~ 382 (489)
T 3hu3_A 304 DELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382 (489)
T ss_dssp ESHHHHCBCTTSC-CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred cchhhhccccccc-cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHH
Confidence 9999999876542 344567888999999998777788999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcC-CCCCccccccCHHHHHHHHH
Q psy7673 161 ALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQA-GIDDTEQVTIGFRHFDIALK 239 (541)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~-~~~~~~~~~i~~~d~~~al~ 239 (541)
.+++.. ....++++..++ ..+.||+++||..||++|...++.+..+.+..++.. .........|+.+||.+|++
T Consensus 383 ~~~~~~---~l~~~~~l~~la--~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~ 457 (489)
T 3hu3_A 383 IHTKNM---KLADDVDLEQVA--NETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS 457 (489)
T ss_dssp HHTTTS---CBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHT
T ss_pred HHHhcC---CCcchhhHHHHH--HHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHH
Confidence 998764 344677888888 899999999999999999999988766543322111 01112345699999999999
Q ss_pred hcCCCCChhhhhhhHHHhhhhcCccchhhccccCCCCCCcchhhHhhhhhhcccccccccccHHH
Q psy7673 240 RIKPSVSKADCKNYESLKQRYTTPGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQT 304 (541)
Q Consensus 240 ~~~~~~s~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 304 (541)
.++|+ .+.+...+.|... |...||...
T Consensus 458 ~~~ps--------------------~~re~~~e~p~v~------------------W~dig~~~~ 484 (489)
T 3hu3_A 458 QSNPS--------------------ALRETVVEVPQVT------------------WEDIGGRSH 484 (489)
T ss_dssp SHHHH--------------------HHHGGGC---------------------------------
T ss_pred hCCch--------------------hhhcccccCCCCC------------------HHHcCCCcc
Confidence 99887 5556666677765 888888653
No 17
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=99.97 E-value=6.8e-29 Score=257.50 Aligned_cols=237 Identities=22% Similarity=0.361 Sum_probs=208.2
Q ss_pred ccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhh
Q psy7673 294 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNL 373 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~ 373 (541)
..+.+.+|++.++++|++.+.. ++|+++++|++|.+++++|.|++.+|+++.||+||+|+|++++.+++.+. +...+
T Consensus 226 ~~~~~~~g~~~l~~~l~~~l~~-~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~l~~~~--~~~~~ 302 (470)
T 3i6d_A 226 QFQTLSTGLQTLVEEIEKQLKL-TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAGMLSEL--PAISH 302 (470)
T ss_dssp -EEEETTCTHHHHHHHHHTCCS-EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHHHHHTTTS--TTHHH
T ss_pred eEEEeCChHHHHHHHHHHhcCC-CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHHHHHcCCc--hhhHH
Confidence 5688999999999999999955 69999999999999988999999999889999999999999999998653 45678
Q ss_pred hcCCCCccEEEEEEeeCCCCCCC--CccEEEecCCCCCCceEEEeecccccC---CCcEEEEEEecCccCCcccCCCCHH
Q psy7673 374 LSSIEHVNVAVINLAYENIPMKQ--NAFGFLVPPREKLPILGVVFDSCCFEQ---ADWTILTVMMGGAWYDTYFKGQSKE 448 (541)
Q Consensus 374 l~~~~~~~~~~v~l~~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~s~~~~~---~~~~~l~~~~~g~~~~~~~~~~~~e 448 (541)
++++.|.++.++++.|++++|+. .++|++++..+...+.+++|+|..|+. .+..++++++++.+++.+.. .+++
T Consensus 303 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~-~~~~ 381 (470)
T 3i6d_A 303 LKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVD-LSDN 381 (470)
T ss_dssp HHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGT-SCHH
T ss_pred HhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccC-CCHH
Confidence 89999999999999999877753 578999988777778889998877653 45678899998777766655 8999
Q ss_pred HHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHHH
Q psy7673 449 YILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAV 528 (541)
Q Consensus 449 ~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~aa 528 (541)
++++.++++|++++|...+|....+++|++++|+|++||...+..++..+.++.++|++||+|+.|.|+++|+.||.++|
T Consensus 382 ~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~gv~~a~~sG~~aA 461 (470)
T 3i6d_A 382 DIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGIPDCIDQGKAAV 461 (470)
T ss_dssp HHHHHHHHHHGGGSCCCSCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 99999999999999988789999999999999999999998888887777666679999999999999999999999999
Q ss_pred HHHhhh
Q psy7673 529 ESIKWQ 534 (541)
Q Consensus 529 ~~i~~~ 534 (541)
++|+..
T Consensus 462 ~~i~~~ 467 (470)
T 3i6d_A 462 SDALTY 467 (470)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999654
No 18
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=99.97 E-value=9.4e-29 Score=256.64 Aligned_cols=236 Identities=23% Similarity=0.388 Sum_probs=206.3
Q ss_pred cccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHh
Q psy7673 293 WSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGN 372 (541)
Q Consensus 293 ~~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~ 372 (541)
..++.+++|++.++++|++.+.. ++|+++++|++|.+++++|.|++.+| ++.||+||+|+|++++.+++++.+ . +
T Consensus 226 ~~~~~~~~G~~~l~~~l~~~l~~-~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~ll~~~~--~-~ 300 (475)
T 3lov_A 226 GQFLSLETGLESLIERLEEVLER-SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQVVQLLPDAH--L-P 300 (475)
T ss_dssp CSEEEETTCHHHHHHHHHHHCSS-CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHHHHHCTTSC--C-H
T ss_pred CcEEeeCChHHHHHHHHHhhccC-CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHHHHHcCccC--H-H
Confidence 34688999999999999999955 59999999999999988999999888 799999999999999999986543 2 7
Q ss_pred hhcCCCCccEEEEEEeeCCCC-CCCCccEEEecCCCCCCceEEEeecccccCC--CcEEEEEEecCccCCcccCCCCHHH
Q psy7673 373 LLSSIEHVNVAVINLAYENIP-MKQNAFGFLVPPREKLPILGVVFDSCCFEQA--DWTILTVMMGGAWYDTYFKGQSKEY 449 (541)
Q Consensus 373 ~l~~~~~~~~~~v~l~~~~~~-~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~--~~~~l~~~~~g~~~~~~~~~~~~e~ 449 (541)
++.++.|.++.++++.|++++ .+..++|++++..++..+.+++|+++.|+.. +...+++++++..+..+.. .++++
T Consensus 301 ~~~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~l~~~~~~~~~~~~~~-~~~e~ 379 (475)
T 3lov_A 301 ELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFVGRPGNDHLVH-ESDEV 379 (475)
T ss_dssp HHHTCCEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTTEEEEEEEECBTTBCGGGG-SCHHH
T ss_pred HHhcCCCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCCcEEEEEEeCCCCCCcccC-CCHHH
Confidence 788999999999999998765 3346789999888878888999999887642 2578888997777666655 88999
Q ss_pred HHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHHHH
Q psy7673 450 ILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAVE 529 (541)
Q Consensus 450 ~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~aa~ 529 (541)
+++.++++|++++|...+|.+..+++|++++|+|++||...+..++..+.++.+|||+||+|+.|.++++|++||+++|+
T Consensus 380 ~~~~~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g~~~a~~sG~~aA~ 459 (475)
T 3lov_A 380 LQQAVLQDLEKICGRTLEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGLPDCVASAKTMIE 459 (475)
T ss_dssp HHHHHHHHHHHHHSSCCCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999988888877776666799999999999999999999999999
Q ss_pred HHhhh
Q psy7673 530 SIKWQ 534 (541)
Q Consensus 530 ~i~~~ 534 (541)
+|+..
T Consensus 460 ~i~~~ 464 (475)
T 3lov_A 460 SIELE 464 (475)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99554
No 19
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=249.58 Aligned_cols=249 Identities=35% Similarity=0.623 Sum_probs=201.2
Q ss_pred CCCchhhc--CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEE
Q psy7673 3 PVKYPKLF--GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 3 ~~~~~~~~--~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
|+.+|+++ ...++.++||+||||||||+++++++++++.+++.++|.++...+.+.....++.+|..+....|+||||
T Consensus 103 ~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~i 182 (357)
T 3d8b_A 103 PMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFI 182 (357)
T ss_dssp HHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEE
Confidence 34556665 2467889999999999999999999999999999999999999999999999999999998888999999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC--CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
||+|.+.+.+.. .......+.++.++..+++.. ...+++||++||.++.+++++++ ||...+.++.|+.++|.+|
T Consensus 183 DEid~l~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~i 259 (357)
T 3d8b_A 183 DEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQI 259 (357)
T ss_dssp ETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHH
T ss_pred eCchhhhccCCC-CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHH
Confidence 999999877543 234456778888998888764 24579999999999999999999 9999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHH
Q psy7673 159 LLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIAL 238 (541)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 238 (541)
++.++...... ..+.++..++ +.+.||+++||..+|+.|+..++++..+.... .........|+.+||.+|+
T Consensus 260 l~~~~~~~~~~--l~~~~l~~la--~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~----~~~~~~~~~i~~~d~~~al 331 (357)
T 3d8b_A 260 VINLMSKEQCC--LSEEEIEQIV--QQSDAFSGADMTQLCREASLGPIRSLQTADIA----TITPDQVRPIAYIDFENAF 331 (357)
T ss_dssp HHHHHHTSCBC--CCHHHHHHHH--HHTTTCCHHHHHHHHHHHHTHHHHHCCC--------------CCCBCHHHHHHHH
T ss_pred HHHHHhhcCCC--ccHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc----cccccccCCcCHHHHHHHH
Confidence 99999864321 2334566677 88999999999999999999988764322111 1112234579999999999
Q ss_pred HhcCCCCChhhhhhhHHHhhhhcC
Q psy7673 239 KRIKPSVSKADCKNYESLKQRYTT 262 (541)
Q Consensus 239 ~~~~~~~s~~~~~~~e~~~~~~~~ 262 (541)
+.++|+.+.++...|++|.+.|+.
T Consensus 332 ~~~~ps~~~~~~~~~~~~~~~~g~ 355 (357)
T 3d8b_A 332 RTVRPSVSPKDLELYENWNKTFGC 355 (357)
T ss_dssp HHHGGGCCCCCHHHHHHHHHHHSC
T ss_pred HhcCCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999986
No 20
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=99.96 E-value=5e-29 Score=247.26 Aligned_cols=228 Identities=15% Similarity=0.137 Sum_probs=187.5
Q ss_pred cccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcc----cCchh
Q psy7673 295 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHK----QHPTL 370 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~----~~~~~ 370 (541)
.|...+||..++++|++.+ |++|+++++|++|.+++++|.|++.+|+.+.||+||+|+|++++.+|+++ +++..
T Consensus 104 ~~~~~~g~~~l~~~l~~~~--g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~~~~ 181 (342)
T 3qj4_A 104 NFVAPQGISSIIKHYLKES--GAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISECQ 181 (342)
T ss_dssp EEECTTCTTHHHHHHHHHH--TCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSCHHH
T ss_pred ceecCCCHHHHHHHHHHhc--CCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccCHHH
Confidence 5888999999999999987 56999999999999998999999988877899999999999999999864 34456
Q ss_pred HhhhcCCCCccEEEEEEeeCCC-CCCCCccEEEecCCCCCCceEEEeecccccC---CCcEEEEEEecCccCCcccCCCC
Q psy7673 371 GNLLSSIEHVNVAVINLAYENI-PMKQNAFGFLVPPREKLPILGVVFDSCCFEQ---ADWTILTVMMGGAWYDTYFKGQS 446 (541)
Q Consensus 371 ~~~l~~~~~~~~~~v~l~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~---~~~~~l~~~~~g~~~~~~~~~~~ 446 (541)
.+.+++++|.++++|++.|++. +.+...+|++++. +..+.+++++++++.. .+...+++++++.|++++.. .+
T Consensus 182 ~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~-~~ 258 (342)
T 3qj4_A 182 RQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITS--NPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLE-HS 258 (342)
T ss_dssp HHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSS--CSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTTT-SC
T ss_pred HHHHhcCCccccEEEEEEECCCCccCCceeeEEccC--CcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhhc-CC
Confidence 7889999999999999999875 3344556777763 2235556677777541 23458899999999888877 89
Q ss_pred HHHHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHh-hCCCCEEEEcCCCCCCChHHHHHHHH
Q psy7673 447 KEYILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYID-THQLPLYLTGSSYDGVGVNDVIALSK 525 (541)
Q Consensus 447 ~e~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~-~~~~~l~laG~~~~g~~v~~ai~sg~ 525 (541)
++++++.++++|++++|...+|.+..++||++++|+|.+.. +. ..+. ...++|++||||+.|+++|+||+||.
T Consensus 259 ~~~~~~~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~~--~~----~~~~~~~~~~l~laGd~~~g~~v~~ai~sg~ 332 (342)
T 3qj4_A 259 IEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAAN--CP----GQMTLHHKPFLACGGDGFTQSNFDGCITSAL 332 (342)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCCSEEEEEEETTCSBSSCCSS--SC----SCEEEETTTEEEECSGGGSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCceeeeccccccccccccCC--Cc----ceeEecCCccEEEEccccCCCCccHHHHHHH
Confidence 99999999999999999878899999999999999996521 00 0122 34579999999999999999999999
Q ss_pred HHHHHHhh
Q psy7673 526 KAVESIKW 533 (541)
Q Consensus 526 ~aa~~i~~ 533 (541)
++|++|+.
T Consensus 333 ~aa~~i~~ 340 (342)
T 3qj4_A 333 CVLEALKN 340 (342)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99999943
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=1.3e-28 Score=249.57 Aligned_cols=213 Identities=45% Similarity=0.782 Sum_probs=183.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
|.+.++++||+||||||||+++++++.+++.+++.++|+++...+.+.....++.+|..+....|+||||||+|.+..++
T Consensus 45 g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r 124 (476)
T 2ce7_A 45 GARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR 124 (476)
T ss_dssp TCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhc
Confidence 67889999999999999999999999999999999999999998889888899999999999999999999999998876
Q ss_pred CCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC
Q psy7673 91 SSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD 168 (541)
Q Consensus 91 ~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~ 168 (541)
+.. +......+.++.|+..++.+....+++||++||.++.++++++++|||+..|.++.|+.++|.+|++.+++..
T Consensus 125 ~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~-- 202 (476)
T 2ce7_A 125 GAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK-- 202 (476)
T ss_dssp --------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--
T ss_pred ccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC--
Confidence 532 2233456788899999987766678999999999999999999999999999999999999999999998864
Q ss_pred CCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCCC
Q psy7673 169 PMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKPS 244 (541)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 244 (541)
.+.+++++..++ ..+.||+++||.++|++|...|..+.. ..|+.+||.+|+....+.
T Consensus 203 -~l~~~v~l~~la--~~t~G~sgadL~~lv~~Aal~A~~~~~----------------~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 203 -PLAEDVNLEIIA--KRTPGFVGADLENLVNEAALLAAREGR----------------DKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp -CBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC----------------SSBCHHHHHHHHHHHC--
T ss_pred -CCcchhhHHHHH--HhcCCCcHHHHHHHHHHHHHHHHHcCC----------------CeecHHHHHHHHHHHhcC
Confidence 345678888888 899999999999999999888864421 249999999999987653
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=8.9e-28 Score=228.04 Aligned_cols=212 Identities=43% Similarity=0.741 Sum_probs=182.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
|...+.+++|+||||||||++++++++.++.+++.++|.++...+.+.....+..+|..+....|+++||||+|.+...+
T Consensus 41 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~ 120 (257)
T 1lv7_A 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120 (257)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCC
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCC
Confidence 56778899999999999999999999999999999999999888888888899999999988888999999999998776
Q ss_pred CCCC--CCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC
Q psy7673 91 SSLG--DNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD 168 (541)
Q Consensus 91 ~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~ 168 (541)
+... ......+.++.++..++.+....+++||++||.++.+++.+++++||+..+.++.|+.++|.+|++.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-- 198 (257)
T 1lv7_A 121 GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-- 198 (257)
T ss_dssp STTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--
T ss_pred CCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC--
Confidence 5421 222335678888999988777778999999999999999999999999999999999999999999998764
Q ss_pred CCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCC
Q psy7673 169 PMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKP 243 (541)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 243 (541)
.+.++.++..++ ..+.||+++||.++|++|...|..+.. ..|+.+||.+|++.+..
T Consensus 199 -~l~~~~~~~~la--~~~~G~~~~dl~~l~~~a~~~a~~~~~----------------~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 199 -PLAPDIDAAIIA--RGTPGFSGADLANLVNEAALFAARGNK----------------RVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp -CBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC----------------SSBCHHHHHHHHHHHTT
T ss_pred -CCCccccHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCC----------------CcccHHHHHHHHHHHhc
Confidence 345667788888 889999999999999999988875532 24999999999998753
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=5e-29 Score=242.09 Aligned_cols=249 Identities=37% Similarity=0.608 Sum_probs=194.5
Q ss_pred CCchhhcC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEc
Q psy7673 4 VKYPKLFG--KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFD 81 (541)
Q Consensus 4 ~~~~~~~~--~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 81 (541)
+.+|+++. ..++.++||+||||||||+++++++++++.+++.++|.++...+.+.....++.+|..+....|++||||
T Consensus 41 ~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 120 (297)
T 3b9p_A 41 SVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 120 (297)
T ss_dssp HHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred hhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEec
Confidence 34566652 3467899999999999999999999999999999999999998889989999999999998899999999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCC---CCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHH
Q psy7673 82 EIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGR---GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEI 158 (541)
Q Consensus 82 e~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 158 (541)
|+|.+...+... .........+.++..++..... .+++||++||.++.+++.+++ ||...+.++.|+.++|..|
T Consensus 121 Eid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~i 197 (297)
T 3b9p_A 121 EVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELL 197 (297)
T ss_dssp TGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHH
T ss_pred cHHHhccccccC-cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHH
Confidence 999998776542 2333456777888888765432 568999999999999999998 9999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHH
Q psy7673 159 LLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIAL 238 (541)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 238 (541)
++.++..... ..++.++..++ ..+.||+++||..+++.|+..++++....... .........|+.+||..|+
T Consensus 198 l~~~~~~~~~--~~~~~~~~~la--~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~----~~~~~~~~~i~~~d~~~a~ 269 (297)
T 3b9p_A 198 LNRLLQKQGS--PLDTEALRRLA--KITDGYSGSDLTALAKDAALEPIRELNVEQVK----CLDISAMRAITEQDFHSSL 269 (297)
T ss_dssp HHHHHGGGSC--CSCHHHHHHHH--HHTTTCCHHHHHHHHHHHTTHHHHTCC------------CCCCCCCCHHHHHHHT
T ss_pred HHHHHHhcCC--CCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc----cccccccCCcCHHHHHHHH
Confidence 9999986532 12233466666 78999999999999999999988764322111 1112233579999999999
Q ss_pred HhcCCCCChhhhhhhHHHhhhhcCc
Q psy7673 239 KRIKPSVSKADCKNYESLKQRYTTP 263 (541)
Q Consensus 239 ~~~~~~~s~~~~~~~e~~~~~~~~~ 263 (541)
+.++|+.+.+....|++|.+.|+..
T Consensus 270 ~~~~~s~~~~~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 270 KRIRRSVAPQSLNSYEKWSQDYGDI 294 (297)
T ss_dssp TSCCCSSCHHHHHHHHHHC------
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCCe
Confidence 9999999999999999999998864
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2e-28 Score=236.50 Aligned_cols=230 Identities=43% Similarity=0.707 Sum_probs=184.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
|..++.++||+||||||||+++++++++++.+++.+++.++...+.+.....+..+|..+....|+||||||+|.+.+++
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 126 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKR 126 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCC
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCCC--CChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC
Q psy7673 91 SSLGD--NNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD 168 (541)
Q Consensus 91 ~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~ 168 (541)
..... .......+..++..++......+++||+|||.++.+++.+++++||...+.++.|+.++|.+|++.++....
T Consensus 127 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~- 205 (285)
T 3h4m_A 127 TDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN- 205 (285)
T ss_dssp SSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC-
T ss_pred ccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC-
Confidence 54321 123345666777777776667789999999999999999999999999999999999999999999988643
Q ss_pred CCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCCC--CC
Q psy7673 169 PMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKPS--VS 246 (541)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~--~s 246 (541)
...++++..++ ..+.|+++++|..+++.|...|..+... .|+.+||.+|++.+.+. .+
T Consensus 206 --~~~~~~~~~l~--~~~~g~~~~~i~~l~~~a~~~a~~~~~~----------------~I~~~d~~~al~~~~~~~~~~ 265 (285)
T 3h4m_A 206 --LAEDVNLEEIA--KMTEGCVGAELKAICTEAGMNAIRELRD----------------YVTMDDFRKAVEKIMEKKKVK 265 (285)
T ss_dssp --BCTTCCHHHHH--HHCTTCCHHHHHHHHHHHHHHHHHTTCS----------------SBCHHHHHHHHHHHHHHHCCC
T ss_pred --CCCcCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhccC----------------cCCHHHHHHHHHHHHhccccc
Confidence 44667888888 8999999999999999999999876432 49999999999877432 12
Q ss_pred hhhhhhhHHHhhhhc
Q psy7673 247 KADCKNYESLKQRYT 261 (541)
Q Consensus 247 ~~~~~~~e~~~~~~~ 261 (541)
......+..|...++
T Consensus 266 ~~~~~~~~~~~~~~~ 280 (285)
T 3h4m_A 266 VKEPAHLDVLYRLEH 280 (285)
T ss_dssp ---------------
T ss_pred cCCchHHHHHHHHhc
Confidence 223444445544443
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=247.56 Aligned_cols=247 Identities=36% Similarity=0.605 Sum_probs=191.8
Q ss_pred CchhhcC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcC
Q psy7673 5 KYPKLFG--KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDE 82 (541)
Q Consensus 5 ~~~~~~~--~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 82 (541)
.+++++. ..++.++||+||||||||++++++|++++.+++.++|.++.+.+.+.....+..+|..+....|+||||||
T Consensus 136 ~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDE 215 (389)
T 3vfd_A 136 LRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQ 215 (389)
T ss_dssp HCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEET
T ss_pred cCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3444442 35678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCChhHHHHHHHHHHhcCCCC--CCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHH
Q psy7673 83 IDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEG--RGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILL 160 (541)
Q Consensus 83 ~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~ 160 (541)
+|.+...+.. .......+++..|+..+++... ..+++||++||.++.+++.+++ ||...+.++.|+.++|.+|++
T Consensus 216 id~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~ 292 (389)
T 3vfd_A 216 VDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLK 292 (389)
T ss_dssp GGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred chhhcccCCC-ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHH
Confidence 9999877654 2344567788888888876543 4569999999999999999999 999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHh
Q psy7673 161 ALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKR 240 (541)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 240 (541)
.++...... ..+.++..++ ..+.||++++|..|++.|+..++.+..+.... .........|+.+||..+++.
T Consensus 293 ~~~~~~~~~--l~~~~~~~la--~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~----~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 293 NLLCKQGSP--LTQKELAQLA--RMTDGYSGSDLTALAKDAALGPIRELKPEQVK----NMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp HHHTTSCCC--SCHHHHHHHH--HHTTTCCHHHHHHHHHHHTTHHHHTSCCC-------CCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHhcCCC--CCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhh----ccchhhcCCcCHHHHHHHHHH
Confidence 999875322 2233456666 88999999999999999999998764433221 112223457999999999999
Q ss_pred cCCCCChhhhhhhHHHhhhhcC
Q psy7673 241 IKPSVSKADCKNYESLKQRYTT 262 (541)
Q Consensus 241 ~~~~~s~~~~~~~e~~~~~~~~ 262 (541)
++++.+.+.+..+++|...|+.
T Consensus 365 ~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 365 IKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp CCCSSCHHHHHHHHHHHHHCC-
T ss_pred cCCCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999986
No 26
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=99.95 E-value=4.7e-27 Score=244.12 Aligned_cols=241 Identities=25% Similarity=0.424 Sum_probs=201.2
Q ss_pred ccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEe---cCceeEeeCEEEEcCChhHHHhhhcccCchh
Q psy7673 294 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTL---NNDQHIEANHVVSALPAPKLGMLLHKQHPTL 370 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~---~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~ 370 (541)
..+.+++|+++|+++|++.++ ++|+++++|++|.+++++|.|++ .+|+++.||+||+|+|++++.++++++++..
T Consensus 229 ~~~~~~gG~~~l~~~l~~~lg--~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~ll~~l~~~~ 306 (478)
T 2ivd_A 229 ALSTFDGGLQVLIDALAASLG--DAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDAL 306 (478)
T ss_dssp CEEEETTCTHHHHHHHHHHHG--GGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHH
T ss_pred cEEEECCCHHHHHHHHHHHhh--hhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHHHHHHhhccCHHH
Confidence 468899999999999999983 58999999999998888899987 6777899999999999999999998888778
Q ss_pred HhhhcCCCCccEEEEEEeeCCCCCCC-CccEEEecCCCCCCceEEEeeccccc---CCCcEEEEEEecCccCCcccCCCC
Q psy7673 371 GNLLSSIEHVNVAVINLAYENIPMKQ-NAFGFLVPPREKLPILGVVFDSCCFE---QADWTILTVMMGGAWYDTYFKGQS 446 (541)
Q Consensus 371 ~~~l~~~~~~~~~~v~l~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~s~~~~---~~~~~~l~~~~~g~~~~~~~~~~~ 446 (541)
.++++++.|.+++++++.|++++|+. .+++++++..++.++.+++|++..++ +.+..++++++++.++..+.. .+
T Consensus 307 ~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~-~~ 385 (478)
T 2ivd_A 307 AALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVE-QD 385 (478)
T ss_dssp HHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGG-SC
T ss_pred HHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccccC-CC
Confidence 88899999999999999999876665 67888887655667788899887665 345678999998877766554 78
Q ss_pred HHHHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHH
Q psy7673 447 KEYILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKK 526 (541)
Q Consensus 447 ~e~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~ 526 (541)
++++.+.+++.|+++++....|....+++|.+++|+|.+|+......++..+.. .+|||+||+|+.|.|+++|+.||.+
T Consensus 386 ~~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~~~~g~gv~gA~~SG~~ 464 (478)
T 2ivd_A 386 EDALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQR-LPGLHLIGNAYKGVGLNDCIRNAAQ 464 (478)
T ss_dssp HHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHT-STTEEECSTTTSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhh-CCCEEEEccCCCCCCHHHHHHHHHH
Confidence 999999999999999987767888889999999999999997777666555543 5699999999988899999999999
Q ss_pred HHHHHhhhhcccc
Q psy7673 527 AVESIKWQHWGAQ 539 (541)
Q Consensus 527 aa~~i~~~~~~~~ 539 (541)
+|++|+ +.++.+
T Consensus 465 aA~~i~-~~l~~~ 476 (478)
T 2ivd_A 465 LADALV-AGNTSH 476 (478)
T ss_dssp HHHHHC-C-----
T ss_pred HHHHHH-HhhccC
Confidence 999994 435443
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=4.1e-27 Score=224.34 Aligned_cols=215 Identities=42% Similarity=0.669 Sum_probs=165.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
|..++.++||+||||||||+++++++++++.+++.++|.++...+.+.....+..+|..+....|+||+|||+|.+..++
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~ 114 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKR 114 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccc
Confidence 67889999999999999999999999999999999999999888888888889999999988889999999999998765
Q ss_pred CCCCC---CChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCC
Q psy7673 91 SSLGD---NNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGK 167 (541)
Q Consensus 91 ~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~ 167 (541)
..... .......+..++..++......+++||++||.++.+++.+++++||+..++++.|+.++|.+|++.++....
T Consensus 115 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~ 194 (262)
T 2qz4_A 115 STTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK 194 (262)
T ss_dssp ------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT
T ss_pred cccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC
Confidence 33211 122335667788888877666789999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCCC
Q psy7673 168 DPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKPS 244 (541)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 244 (541)
.. ...+.....++ ..+.||++++|.++++.|...|..+... .|+.+||.+|++.+.++
T Consensus 195 ~~-~~~~~~~~~l~--~~~~g~~~~~l~~l~~~a~~~a~~~~~~----------------~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 195 LT-QSSTFYSQRLA--ELTPGFSGADIANICNEAALHAAREGHT----------------SVHTLNFEYAVERVLAG 252 (262)
T ss_dssp CC-BTHHHHHHHHH--HTCTTCCHHHHHHHHHHHHTC------------------------CCBCCHHHHHHHHHHH
T ss_pred CC-cchhhHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHcCCC----------------CCCHHHHHHHHHHhccC
Confidence 21 11112234556 7899999999999999998888765432 48899999999887543
No 28
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=7e-27 Score=238.19 Aligned_cols=213 Identities=45% Similarity=0.750 Sum_probs=182.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
+...+++++|+||||||||+++++++.+++.+++.+++.++...+.+.....++.+|..+....|+++||||+|.+...+
T Consensus 60 g~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r 139 (499)
T 2dhr_A 60 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139 (499)
T ss_dssp SCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCS
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhh
Confidence 67788999999999999999999999999999999999999888888888888999988877788999999999998765
Q ss_pred CCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC
Q psy7673 91 SSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD 168 (541)
Q Consensus 91 ~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~ 168 (541)
... .......+.++.++..++.......++++++||.++.+|++++|++||++.+.++.|+.++|.+|++.+++..
T Consensus 140 ~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-- 217 (499)
T 2dhr_A 140 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-- 217 (499)
T ss_dssp SSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS--
T ss_pred ccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC--
Confidence 431 1223345778889999988777777999999999999999999999999999999999999999999877643
Q ss_pred CCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCCC
Q psy7673 169 PMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKPS 244 (541)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 244 (541)
.+.+++++..++ ..+.||+++||.++|++|...|..+. ...|+.+||.+|++.+.+.
T Consensus 218 -~l~~dv~l~~lA--~~t~G~~gadL~~lv~~Aa~~A~~~~----------------~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 218 -PLAEDVDLALLA--KRTPGFVGADLENLLNEAALLAAREG----------------RRKITMKDLEEAADRVMML 274 (499)
T ss_dssp -CCCCSSTTHHHH--TTSCSCCHHHHHHHHHHHHHHHTTTC----------------CSSCCSHHHHHHHHHHTTC
T ss_pred -CCChHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHhC----------------CCccCHHHHHHHHHHHhcc
Confidence 456778888888 89999999999999999988775331 1259999999999987654
No 29
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=99.95 E-value=1.4e-26 Score=242.16 Aligned_cols=235 Identities=18% Similarity=0.292 Sum_probs=194.7
Q ss_pred ccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCc------EEEEec--Cc---eeEeeCEEEEcCChhHHHhh
Q psy7673 294 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKG------VKVTLN--ND---QHIEANHVVSALPAPKLGML 362 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~------~~v~~~--~g---~~~~ad~VI~t~P~~~~~~l 362 (541)
..+.++|||++|+++|++.++. ++|++|++|++|.+++++ |.|++. +| +++.||+||+|+|++.+.++
T Consensus 234 ~~~~~~GG~~~l~~~l~~~l~~-~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~l 312 (504)
T 1sez_A 234 GSFSFLGGMQTLTDAICKDLRE-DELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSM 312 (504)
T ss_dssp SCBEETTCTHHHHHHHHTTSCT-TTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTS
T ss_pred ceEeeCcHHHHHHHHHHhhccc-ceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHH
Confidence 3688999999999999999853 489999999999998777 777654 45 57899999999999999999
Q ss_pred hc-----ccCchhHhhhcCCCCccEEEEEEeeCCCCCC--CCccEEEecCCCC---CCceEEEeecccccC---CCcEEE
Q psy7673 363 LH-----KQHPTLGNLLSSIEHVNVAVINLAYENIPMK--QNAFGFLVPPREK---LPILGVVFDSCCFEQ---ADWTIL 429 (541)
Q Consensus 363 l~-----~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~--~~~~g~l~~~~~~---~~~~~~~~~s~~~~~---~~~~~l 429 (541)
+. ++++ ..+.++.|.++.++++.|+..+|+ ..+++++++..+. ..+.+++|+|..++. .+..++
T Consensus 313 l~~~~~~~~~~---~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~~l 389 (504)
T 1sez_A 313 KIAKRGNPFLL---NFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLY 389 (504)
T ss_dssp EEESSSSBCCC---TTSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEE
T ss_pred hhcccCCcccH---HHHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEeeccccCCcCCCCCEEE
Confidence 83 2332 237788999999999999876554 3578888875542 357788888877763 456788
Q ss_pred EEEecCccCCcccCCCCHHHHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEc
Q psy7673 430 TVMMGGAWYDTYFKGQSKEYILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTG 509 (541)
Q Consensus 430 ~~~~~g~~~~~~~~~~~~e~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG 509 (541)
++|++|..+..+.. ++++++++.++++|++++|...+|....+++|.+++|+|.+||...+..+..... +.+|||+||
T Consensus 390 ~~~~~g~~~~~~~~-~~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~-~~~~l~~aG 467 (504)
T 1sez_A 390 TTFVGGSRNRELAK-ASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEK-NLPGLFYAG 467 (504)
T ss_dssp EEEEESTTCGGGTT-CCHHHHHHHHHHHHHHHHCBCSCCSSEEEEEEEEEEECCCTTHHHHHHHHHHHHH-HSTTEEECC
T ss_pred EEEeCCCCcccccC-CCHHHHHHHHHHHHHHHhCCCCCCeEEEEeECCCCCCccCcCHHHHHHHHHHHHH-hCCCEEEEe
Confidence 99998887776655 7999999999999999999877799999999999999999999887776655444 457999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhh
Q psy7673 510 SSYDGVGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 510 ~~~~g~~v~~ai~sg~~aa~~i~~~ 534 (541)
+|+.|.++++|+.||.++|++|+..
T Consensus 468 ~~~~g~~v~gai~sG~~aA~~il~~ 492 (504)
T 1sez_A 468 NHRGGLSVGKALSSGCNAADLVISY 492 (504)
T ss_dssp SSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999554
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=1.2e-29 Score=275.68 Aligned_cols=257 Identities=45% Similarity=0.795 Sum_probs=186.4
Q ss_pred CCCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
+|+.+++.+ +..++.++||+||||||||++++++|..++.+++.+++.++.+.+.++.+..++.+|..+....|+||
T Consensus 495 ~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl 574 (806)
T 1ypw_A 495 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 574 (806)
T ss_dssp SSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCC
T ss_pred hhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEE
Confidence 466777765 67788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCC--CChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 79 FFDEIDALCPKRSSLGD--NNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
||||+|.+...+..... .....++++.|+..++......+++||+|||.++.+|++++|+|||+..|+++.|+.++|.
T Consensus 575 ~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~ 654 (806)
T 1ypw_A 575 FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654 (806)
T ss_dssp CCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHH
T ss_pred EEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHH
Confidence 99999999887654321 1245678889999999887778899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhc-ccCC-----Cc--CC-CCCcccc
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNS-VEND-----DQ--AG-IDDTEQV 227 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~-~~~~-----~~--~~-~~~~~~~ 227 (541)
+|++.+++.. .+..++++..++ +.+.||+++||.++|+.|...|..+.... +... .. .. .......
T Consensus 655 ~Il~~~l~~~---~~~~~~~l~~la--~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (806)
T 1ypw_A 655 AILKANLRKS---PVAKDVDLEFLA--KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVP 729 (806)
T ss_dssp HHTTTTTSCC-------CCCCSCSC--GGGSSSCCHHHHHHHHHHHHHHHSCC------------------------CCT
T ss_pred HHHHHHhccC---CCCcccCHHHHH--HhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccC
Confidence 9999988764 345677788888 88999999999999999999998764322 1000 00 00 0112234
Q ss_pred ccCHHHHHHHHHhcCCCCChhhhhhhHHHhhhhcCc
Q psy7673 228 TIGFRHFDIALKRIKPSVSKADCKNYESLKQRYTTP 263 (541)
Q Consensus 228 ~i~~~d~~~al~~~~~~~s~~~~~~~e~~~~~~~~~ 263 (541)
.|+.+||.+|++..+|+++.+.+..|++|.+.+...
T Consensus 730 ~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~~ 765 (806)
T 1ypw_A 730 EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp TTTTTSSCCCCCC-----------------------
T ss_pred ccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhh
Confidence 699999999999999999999999999999887653
No 31
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=4.4e-26 Score=215.96 Aligned_cols=207 Identities=46% Similarity=0.763 Sum_probs=173.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
+...+++++|+||||||||+++++++..++..++.+++.++...+.+.....+..+|..+....|++++|||+|.+...+
T Consensus 45 ~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~ 124 (254)
T 1ixz_A 45 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124 (254)
T ss_dssp TCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC--
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhccc
Confidence 56778899999999999999999999999999999999888777777777888889998877778999999999987654
Q ss_pred CCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC
Q psy7673 91 SSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD 168 (541)
Q Consensus 91 ~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~ 168 (541)
... .......+.++.++..+++......+++++++|.++.+|++++|++||+..+.++.|+.++|.+|++.+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-- 202 (254)
T 1ixz_A 125 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-- 202 (254)
T ss_dssp -------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS--
T ss_pred CccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC--
Confidence 321 1223345677888888888777777899999999999999999999999999999999999999999888653
Q ss_pred CCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHH
Q psy7673 169 PMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIAL 238 (541)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 238 (541)
.+.+++++..++ ..+.||+++||.++|++|...|..+.. ..|+.+||++|+
T Consensus 203 -~~~~~~~~~~la--~~~~G~~~~dl~~~~~~a~~~a~~~~~----------------~~I~~~dl~~a~ 253 (254)
T 1ixz_A 203 -PLAEDVDLALLA--KRTPGFVGADLENLLNEAALLAAREGR----------------RKITMKDLEEAA 253 (254)
T ss_dssp -CBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC----------------SSBCHHHHHHHT
T ss_pred -CCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhcC----------------CCcCHHHHHHHh
Confidence 345678888888 899999999999999999888865421 249999999986
No 32
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=4.4e-25 Score=211.74 Aligned_cols=207 Identities=46% Similarity=0.763 Sum_probs=172.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
+...+.+++|+||||||||+++++++..++..++.+++.++...+.+.....+..+|..+....|+++++||+|.+...+
T Consensus 69 ~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~ 148 (278)
T 1iy2_A 69 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148 (278)
T ss_dssp TCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-
T ss_pred CCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccc
Confidence 56678889999999999999999999999999999999888777777777788889999887788999999999987654
Q ss_pred CCC--CCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC
Q psy7673 91 SSL--GDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD 168 (541)
Q Consensus 91 ~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~ 168 (541)
... .......+.+..++..++.......+++++++|.++.+|+++++++||+..+.++.|+.++|.+|++.+++..
T Consensus 149 ~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-- 226 (278)
T 1iy2_A 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-- 226 (278)
T ss_dssp -------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS--
T ss_pred ccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC--
Confidence 321 1122345667788888887766667899999999999999999999999999999999999999999888653
Q ss_pred CCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHH
Q psy7673 169 PMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIAL 238 (541)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 238 (541)
.+.+++++..++ ..+.||+++||.++|++|...|..+.. ..|+.+|+++|+
T Consensus 227 -~~~~~~~~~~la--~~~~G~~~~dl~~l~~~a~~~a~~~~~----------------~~I~~~dl~~a~ 277 (278)
T 1iy2_A 227 -PLAEDVDLALLA--KRTPGFVGADLENLLNEAALLAAREGR----------------RKITMKDLEEAA 277 (278)
T ss_dssp -CBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC----------------CSBCHHHHHHHT
T ss_pred -CCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCC----------------CCcCHHHHHHHh
Confidence 345677888888 899999999999999999888764421 249999999986
No 33
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=1.4e-27 Score=228.38 Aligned_cols=217 Identities=43% Similarity=0.692 Sum_probs=171.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
+...+.++||+||||||||+++++++++++.+++.++|.++...+.+.....++.+|..+....|+||||||+|.+...+
T Consensus 40 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 119 (268)
T 2r62_A 40 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119 (268)
T ss_dssp SCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC--
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccc
Confidence 67788899999999999999999999999999999999998887777666667778888888889999999999998764
Q ss_pred CCCC---CCChhHHHHHHHHHHhcCCCC-CCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcC
Q psy7673 91 SSLG---DNNSSMRIVNQLLTEMDGFEG-RGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQG 166 (541)
Q Consensus 91 ~~~~---~~~~~~~~~~~l~~~l~~~~~-~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~ 166 (541)
...+ ......+.++.|+..++.... ..+++||+|||.++.+++.+++++||...+.++.|+.++|.++++.++...
T Consensus 120 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~ 199 (268)
T 2r62_A 120 AAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV 199 (268)
T ss_dssp --------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSS
T ss_pred cccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcC
Confidence 3211 011112234566666665543 345899999999999999999999999999999999999999999988764
Q ss_pred CCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCCCCC
Q psy7673 167 KDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKPSVS 246 (541)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~s 246 (541)
....++++..++ ..+.||+++||.+++++|...|..+. ...|+.+|+.+|++...++..
T Consensus 200 ---~~~~~~~~~~la--~~~~g~~g~dl~~l~~~a~~~a~~~~----------------~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 200 ---KLANDVNLQEVA--KLTAGLAGADLANIINEAALLAGRNN----------------QKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp ---CCCSSCCTTTTT--SSSCSSCHHHHHHHHHHHHHTTSSSC----------------CCSCCHHHHHTSCTTCCCCCC
T ss_pred ---CCCCccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhc----------------cCCcCHHHHHHHHHHHhhcch
Confidence 234566777777 78999999999999999987764221 135999999999999988755
Q ss_pred hh
Q psy7673 247 KA 248 (541)
Q Consensus 247 ~~ 248 (541)
.+
T Consensus 259 ~~ 260 (268)
T 2r62_A 259 KK 260 (268)
T ss_dssp --
T ss_pred hh
Confidence 43
No 34
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.91 E-value=4.3e-24 Score=205.71 Aligned_cols=175 Identities=20% Similarity=0.363 Sum_probs=136.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHH----HhcCCceEEEcCCccc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRA----RNSQPCVIFFDEIDAL 86 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~il~iDe~d~l 86 (541)
+.++|.++||+||||||||++++++|++++.+++.++|+++.+.+.+.....++.+|..+ +...|+||||||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 677889999999999999999999999999999999999999999999999999999888 4668899999999999
Q ss_pred cCCCCCCCCCC-hhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHH
Q psy7673 87 CPKRSSLGDNN-SSMRIVNQLLTEMDGFE-----------GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQD 154 (541)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~l~~~l~~~~-----------~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~ 154 (541)
.+......... ....+.+.|+..++... ...+++||+|||.++.++++++|++||+..|. .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 88554322211 33456688888887432 44579999999999999999999889987776 579999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHH
Q psy7673 155 RKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQ 196 (541)
Q Consensus 155 r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~ 196 (541)
|.+|++.++.. ..++...++ ..+.+|++.+|..
T Consensus 190 r~~Il~~~~~~-------~~~~~~~l~--~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRT-------DNVPAEDVV--KIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGG-------GCCCHHHHH--HHHHHSCSCCHHH
T ss_pred HHHHHHHhccC-------CCCCHHHHH--HHhCCCCcccHHH
Confidence 99999988874 356788888 8889999888763
No 35
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=99.91 E-value=8.4e-24 Score=226.67 Aligned_cols=233 Identities=16% Similarity=0.177 Sum_probs=185.1
Q ss_pred ccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecC------ceeEeeCEEEEcCChhHHHhh-----
Q psy7673 294 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNN------DQHIEANHVVSALPAPKLGML----- 362 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~------g~~~~ad~VI~t~P~~~~~~l----- 362 (541)
..+++.|||++|+++|++.+ +|++|++|++|.+++++|.|++.+ |+++.||+||+|+|+++++++
T Consensus 392 ~~~~~~gG~~~l~~~La~~l----~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~ 467 (662)
T 2z3y_A 392 SHLTVRNGYSCVPVALAEGL----DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQ 467 (662)
T ss_dssp CCEEETTCTTHHHHHHTTTC----EEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCSSE
T ss_pred ceeeecCcHHHHHHHHHhcC----ceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCceE
Confidence 36899999999999999876 899999999999999999998765 568999999999999999873
Q ss_pred -hcccCchhHhhhcCCCCccEEEEEEeeCCCCCCC--CccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCC
Q psy7673 363 -LHKQHPTLGNLLSSIEHVNVAVINLAYENIPMKQ--NAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYD 439 (541)
Q Consensus 363 -l~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~ 439 (541)
.|++++...++++++.|+++.+|++.|++++|+. ..+|++.+..+.....+++|++. +.+++++|++|..+.
T Consensus 468 f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~~~~~~~~~~~~~-----~~~vL~~~~~G~~a~ 542 (662)
T 2z3y_A 468 FVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY-----KAPILLALVAGEAAG 542 (662)
T ss_dssp EESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTEEEEEECCS-----SSSEEEEEECTHHHH
T ss_pred EcCCCCHHHHHHHHhCCccceeEEEEEcCcccccCCCCceeeecCCCCCCCceeEEEeCC-----CCCEEEEEeccHhHH
Confidence 4677777788999999999999999999998874 56788777665556667777664 334788899888777
Q ss_pred cccCCCCHHHHHHHHHHHHHhHcCCC--CCCceeEeeeccC------CCCCCCCCHHHH-HHHHHHHH---------hhC
Q psy7673 440 TYFKGQSKEYILDIACRYVHEILDMP--RTPHAQHVEILKA------CIPQYTLGHAAR-VKDIQGYI---------DTH 501 (541)
Q Consensus 440 ~~~~~~~~e~~~~~~~~~l~~~~g~~--~~~~~~~~~~w~~------a~p~~~~g~~~~-~~~~~~~l---------~~~ 501 (541)
.+.. ++++++++.+++.|++++|.. .+|....+++|.. +++.+.+|+... ...+.+.+ ..+
T Consensus 543 ~~~~-lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~ 621 (662)
T 2z3y_A 543 IMEN-ISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQP 621 (662)
T ss_dssp HHTT-SCHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------C
T ss_pred HHHh-CCHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCC
Confidence 6655 899999999999999999874 4788899999964 565566765322 22222111 112
Q ss_pred CCCEEEEcCCCC---CCChHHHHHHHHHHHHHHhhhhc
Q psy7673 502 QLPLYLTGSSYD---GVGVNDVIALSKKAVESIKWQHW 536 (541)
Q Consensus 502 ~~~l~laG~~~~---g~~v~~ai~sg~~aa~~i~~~~~ 536 (541)
.++|||||+++. .+.|++|+.||.++|++|+....
T Consensus 622 ~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~~~~ 659 (662)
T 2z3y_A 622 IPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL 659 (662)
T ss_dssp CCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHHHcc
Confidence 368999999985 35799999999999999965543
No 36
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=1.7e-23 Score=227.57 Aligned_cols=236 Identities=43% Similarity=0.724 Sum_probs=196.1
Q ss_pred CCCchhhc---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEE
Q psy7673 3 PVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIF 79 (541)
Q Consensus 3 ~~~~~~~~---~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~ 79 (541)
|+.+|++| +..++.++||+||||||||+++++++.+++.+++.++|.++.+.+.++....+..+|..+....|+++|
T Consensus 223 ~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~ 302 (806)
T 1ypw_A 223 PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIF 302 (806)
T ss_dssp HHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEE
Confidence 45677776 688999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHH
Q psy7673 80 FDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEIL 159 (541)
Q Consensus 80 iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il 159 (541)
|||+|.+.+.+... ......++...|+..++......++++|++||+++.+++.+++++||...+.++.|+.++|.+|+
T Consensus 303 iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il 381 (806)
T 1ypw_A 303 IDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp EESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHH
T ss_pred eccHHHhhhccccc-cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHH
Confidence 99999999876542 33455778889999999887778899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCc-CCCCCccccccCHHHHHHHH
Q psy7673 160 LALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQ-AGIDDTEQVTIGFRHFDIAL 238 (541)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~-~~~~~~~~~~i~~~d~~~al 238 (541)
+.++... .+..+.++..++ ..+.||+++++..+++.+...+..+....+...+. ..........++.+|+..++
T Consensus 382 ~~~~~~~---~l~~~~~l~~la--~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al 456 (806)
T 1ypw_A 382 QIHTKNM---KLADDVDLEQVA--NETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWAL 456 (806)
T ss_dssp HHTTTTS---CCCTTCCTHHHH--HSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHH
T ss_pred HHHHhcC---CCcccchhHHHH--HhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccc
Confidence 9888764 345667788888 89999999999999999998887764432211100 00011123457888999999
Q ss_pred HhcCCC
Q psy7673 239 KRIKPS 244 (541)
Q Consensus 239 ~~~~~~ 244 (541)
....++
T Consensus 457 ~~~~~s 462 (806)
T 1ypw_A 457 SQSNPS 462 (806)
T ss_dssp HHSCCC
T ss_pred cccCch
Confidence 888775
No 37
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=99.90 E-value=1.1e-23 Score=228.14 Aligned_cols=232 Identities=16% Similarity=0.179 Sum_probs=184.3
Q ss_pred ccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecC------ceeEeeCEEEEcCChhHHHhh-----
Q psy7673 294 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNN------DQHIEANHVVSALPAPKLGML----- 362 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~------g~~~~ad~VI~t~P~~~~~~l----- 362 (541)
..+++.|||++|+++|++.+ +|++|++|++|.+++++|.|++.+ |.++.||+||+|+|+++++++
T Consensus 563 ~~~~~~gG~~~L~~aLa~~l----~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~ 638 (852)
T 2xag_A 563 SHLTVRNGYSCVPVALAEGL----DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQ 638 (852)
T ss_dssp CCEEETTCTTHHHHHHTTTC----CEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCSSE
T ss_pred ceEEecCcHHHHHHHHHhCC----CEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcccc
Confidence 36889999999999999877 799999999999999999998755 568999999999999999983
Q ss_pred -hcccCchhHhhhcCCCCccEEEEEEeeCCCCCCC--CccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCC
Q psy7673 363 -LHKQHPTLGNLLSSIEHVNVAVINLAYENIPMKQ--NAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYD 439 (541)
Q Consensus 363 -l~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~ 439 (541)
.|++++...++++++.|+++.+|+|.|++++|+. ..||++.+..+.....+++|++. +.++|++|++|..+.
T Consensus 639 F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~~~~~fG~l~~~~~~~~~l~~~~~~~-----~~pvLl~~v~G~~a~ 713 (852)
T 2xag_A 639 FVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY-----KAPILLALVAGEAAG 713 (852)
T ss_dssp EESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCCEEEECCSSSTTTTTTCEEEECS-----SSSEEEEEECHHHHH
T ss_pred cCCCCCHHHHHHHHcCCccceEEEEEEcCCcccCCCCCeeeeeccccCCCCceEEEecCC-----CCCEEEEEecCcCHH
Confidence 3667777788899999999999999999998875 56888877655555566777664 234788899888777
Q ss_pred cccCCCCHHHHHHHHHHHHHhHcCCC--CCCceeEeeeccC------CCCCCCCCHHHH-HHHHHHHH---------hhC
Q psy7673 440 TYFKGQSKEYILDIACRYVHEILDMP--RTPHAQHVEILKA------CIPQYTLGHAAR-VKDIQGYI---------DTH 501 (541)
Q Consensus 440 ~~~~~~~~e~~~~~~~~~l~~~~g~~--~~~~~~~~~~w~~------a~p~~~~g~~~~-~~~~~~~l---------~~~ 501 (541)
.+.. ++++++++.+++.|+++||.. .+|....+++|.. ++..+.+|+... ...+.+.+ ..+
T Consensus 714 ~l~~-lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~ 792 (852)
T 2xag_A 714 IMEN-ISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQP 792 (852)
T ss_dssp HGGG-SCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCC
T ss_pred HHhc-CCHHHHHHHHHHHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCccccccccccccCC
Confidence 6655 899999999999999999874 4788999999964 566666775322 22221111 012
Q ss_pred CCCEEEEcCCCC---CCChHHHHHHHHHHHHHHhhhh
Q psy7673 502 QLPLYLTGSSYD---GVGVNDVIALSKKAVESIKWQH 535 (541)
Q Consensus 502 ~~~l~laG~~~~---g~~v~~ai~sg~~aa~~i~~~~ 535 (541)
.++|||||+++. ...+++|+.||.++|++|+...
T Consensus 793 ~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l 829 (852)
T 2xag_A 793 IPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF 829 (852)
T ss_dssp CCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 368999999984 3579999999999999996553
No 38
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=99.89 E-value=1.6e-22 Score=211.94 Aligned_cols=233 Identities=14% Similarity=0.162 Sum_probs=182.1
Q ss_pred ccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhh--cccCchhH
Q psy7673 294 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLL--HKQHPTLG 371 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll--~~~~~~~~ 371 (541)
..+.+.+|+++++++|++.+ |++|+++++|++|.+++++|.|++.+|+++.||+||+|+|++++.+++ |++++...
T Consensus 206 ~~~~~~gG~~~l~~~l~~~l--g~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~l~~~p~lp~~~~ 283 (520)
T 1s3e_A 206 QERKFVGGSGQVSERIMDLL--GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRN 283 (520)
T ss_dssp TSEEETTCTHHHHHHHHHHH--GGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHH
T ss_pred ceEEEeCCHHHHHHHHHHHc--CCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHHHcceeeCCCCCHHHH
Confidence 35789999999999999988 458999999999999888899999899889999999999999999886 55677777
Q ss_pred hhhcCCCCccEEEEEEeeCCCCCCCCcc-EEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCCCHHHH
Q psy7673 372 NLLSSIEHVNVAVINLAYENIPMKQNAF-GFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQSKEYI 450 (541)
Q Consensus 372 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~~~e~~ 450 (541)
++++++.|.++.++++.|++++|+..++ |.++....+.++ .++|+++..+ .+...+++|++|..+..+.. ++++++
T Consensus 284 ~~i~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~-~~~~d~~~~~-~~~~~l~~~~~~~~a~~~~~-~~~~e~ 360 (520)
T 1s3e_A 284 QMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPV-AYTLDDTKPE-GNYAAIMGFILAHKARKLAR-LTKEER 360 (520)
T ss_dssp HHTTSCCBCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSC-SEEEECCCTT-SCSCEEEEEEETHHHHHHTT-SCHHHH
T ss_pred HHHHhCCCcceEEEEEEeCCCcccCCCCCceeeccCCCCce-EEEeeCCCCC-CCCCEEEEEccchhhhhhhc-CCHHHH
Confidence 8899999999999999999888876555 444433333333 3456655332 23368888988876665554 789999
Q ss_pred HHHHHHHHHhHcCCC--CCCceeEeeecc------CCC-CCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCC---CCCChH
Q psy7673 451 LDIACRYVHEILDMP--RTPHAQHVEILK------ACI-PQYTLGHAARVKDIQGYIDTHQLPLYLTGSSY---DGVGVN 518 (541)
Q Consensus 451 ~~~~~~~l~~~~g~~--~~~~~~~~~~w~------~a~-p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~---~g~~v~ 518 (541)
.+.+++.|++++|.. ..|.....++|. +++ +.+.+|+... +...+.++.++|||||+++ ..++++
T Consensus 361 ~~~vl~~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~---~~~~l~~p~~~L~fAG~~t~~~~~g~v~ 437 (520)
T 1s3e_A 361 LKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQ---YGRVLRQPVDRIYFAGTETATHWSGYME 437 (520)
T ss_dssp HHHHHHHHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHH---HGGGTTCCBTTEEECSGGGCSSSTTSHH
T ss_pred HHHHHHHHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCcccc---chHHHhCCCCCEEEeehhhcCcCcEEhH
Confidence 999999999999864 468888999995 233 3677886532 2223445667999999986 334799
Q ss_pred HHHHHHHHHHHHHhhh
Q psy7673 519 DVIALSKKAVESIKWQ 534 (541)
Q Consensus 519 ~ai~sg~~aa~~i~~~ 534 (541)
+|+.||.++|++|+..
T Consensus 438 GAi~SG~~aA~~i~~~ 453 (520)
T 1s3e_A 438 GAVEAGERAAREILHA 453 (520)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999554
No 39
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=99.89 E-value=2.5e-23 Score=216.53 Aligned_cols=239 Identities=12% Similarity=0.150 Sum_probs=183.7
Q ss_pred cccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCc---eeEeeCEEEEcCChhHHHhhhcccCch
Q psy7673 293 WSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNND---QHIEANHVVSALPAPKLGMLLHKQHPT 369 (541)
Q Consensus 293 ~~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g---~~~~ad~VI~t~P~~~~~~ll~~~~~~ 369 (541)
..+++++||+++|+++|++.++. ++|+++++|++|.+++++|.|++.+| +++.||+||+|+|++++.+++.++++.
T Consensus 229 ~~~~~~~gG~~~l~~~l~~~l~~-~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~~l~~l~~~l~~~ 307 (489)
T 2jae_A 229 MMMFTPVGGMDRIYYAFQDRIGT-DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVGRLQNNLPGD 307 (489)
T ss_dssp SSEEEETTCTTHHHHHHHHHHCG-GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHHHHTTSEECCCHH
T ss_pred ccEEeecCCHHHHHHHHHHhcCC-CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHHHHHhCccCCCHH
Confidence 34788999999999999999953 47999999999999999999988766 678999999999999999988777777
Q ss_pred hHhhhcCCCCccEEEEEEeeCCCCCCC--CccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCCCH
Q psy7673 370 LGNLLSSIEHVNVAVINLAYENIPMKQ--NAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQSK 447 (541)
Q Consensus 370 ~~~~l~~~~~~~~~~v~l~~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 447 (541)
..++++++.|.++.++++.|++++|+. ..+|.+.. ++.++..+.+++..++.+...++++|++|..+..+.. +++
T Consensus 308 ~~~~l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~--~~~~~~~~~~~s~~~~~~~~~l~~~~~~g~~~~~~~~-~~~ 384 (489)
T 2jae_A 308 VLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASN--TDKDISQIMFPYDHYNSDRGVVVAYYSSGKRQEAFES-LTH 384 (489)
T ss_dssp HHHHHHTEECCCEEEEEEEESSCHHHHTTCCCSCEEE--ESSTTCEEECCSSSTTSSCEEEEEEEEETHHHHHHHT-SCH
T ss_pred HHHHHHhCCCccceEEEEEeCCCCccCCCCccccccc--CCCCceEEEeCCCCCCCCCCEEEEEeeCCchhhhhhc-CCH
Confidence 888999999999999999999876653 23443332 2446777888887664445566667888877766655 789
Q ss_pred HHHHHHHHHHHHhHcCC--CCCCceeEeeeccCCCCCCCCCH-----------HHHHHHHHHHHhhCCCCEEEEcCCC--
Q psy7673 448 EYILDIACRYVHEILDM--PRTPHAQHVEILKACIPQYTLGH-----------AARVKDIQGYIDTHQLPLYLTGSSY-- 512 (541)
Q Consensus 448 e~~~~~~~~~l~~~~g~--~~~~~~~~~~~w~~a~p~~~~g~-----------~~~~~~~~~~l~~~~~~l~laG~~~-- 512 (541)
+++.+.+++.|++++|. ..+|.....++|... | |..|. ..........+.++.++|||||+++
T Consensus 385 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~W~~~-~-~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~faG~~~~~ 462 (489)
T 2jae_A 385 RQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRT-K-YSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYFAGDHLSN 462 (489)
T ss_dssp HHHHHHHHHHHHHHHCGGGGSSEEEEEEEEGGGS-T-TTSCSSCEETTC-------CCHHHHHHTSCBTTEEECSGGGBS
T ss_pred HHHHHHHHHHHHHHcCcchhhhccccEEEEcCCC-C-CCCCcchhcccccCCCcccchhhHHHHhCCCCcEEEeEHHhcc
Confidence 99999999999999986 356777778899653 2 22221 1111223334555677999999987
Q ss_pred CCCChHHHHHHHHHHHHHHhhhhccc
Q psy7673 513 DGVGVNDVIALSKKAVESIKWQHWGA 538 (541)
Q Consensus 513 ~g~~v~~ai~sg~~aa~~i~~~~~~~ 538 (541)
.+.++++|+.||.++|++|+. .+.+
T Consensus 463 ~~~~v~gAi~sg~~aA~~i~~-~l~~ 487 (489)
T 2jae_A 463 AIAWQHGALTSARDVVTHIHE-RVAQ 487 (489)
T ss_dssp STTSHHHHHHHHHHHHHHHHH-HHHC
T ss_pred CccHHHHHHHHHHHHHHHHHH-HHhh
Confidence 578999999999999999954 3443
No 40
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=99.89 E-value=4.1e-22 Score=205.93 Aligned_cols=227 Identities=11% Similarity=0.121 Sum_probs=182.8
Q ss_pred ccccccHHHHHHHHHHhccCCcEEecc--ceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcc----cCch
Q psy7673 296 WSVEGGLQTIVNTLGEHLSNKVEVKMD--TTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHK----QHPT 369 (541)
Q Consensus 296 ~~~~~G~~~l~~~l~~~l~~~~~i~~~--~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~----~~~~ 369 (541)
|.+.||+++++++|++.++.. +|+++ ++|++|.+++++|++ .+|+++.||+||+|+|++.+.+++.+ .++.
T Consensus 209 yp~~gG~~~l~~~la~~l~~~-~i~~~~~~~V~~I~~~~~~v~~--~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~ 285 (484)
T 4dsg_A 209 FPQRGGTGIIYQAIKEKLPSE-KLTFNSGFQAIAIDADAKTITF--SNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDE 285 (484)
T ss_dssp EESSSCTHHHHHHHHHHSCGG-GEEECGGGCEEEEETTTTEEEE--TTSCEEECSEEEECSCHHHHHHHEECSSCTTGGG
T ss_pred eecCCCHHHHHHHHHhhhhhC-eEEECCCceeEEEEecCCEEEE--CCCCEEECCEEEECCCHHHHHHHhhccCCCCCHH
Confidence 456799999999999999543 79999 569999988777654 67778999999999999999999965 6677
Q ss_pred hHhhhcCCCCccEEEEEEeeCCCCCC--CCccEEEecCCCCCCceEEEeecccccC---CCcEEEEEEecCccCCcccCC
Q psy7673 370 LGNLLSSIEHVNVAVINLAYENIPMK--QNAFGFLVPPREKLPILGVVFDSCCFEQ---ADWTILTVMMGGAWYDTYFKG 444 (541)
Q Consensus 370 ~~~~l~~~~~~~~~~v~l~~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~s~~~~~---~~~~~l~~~~~g~~~~~~~~~ 444 (541)
..+++.++.|.++.++++.|+..... .+++++++|..+ .++..+++.+++++. .+.+.+++.++.. . ...
T Consensus 286 ~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~-~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~--~-~~~- 360 (484)
T 4dsg_A 286 WPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDT-SPFYRATVFSNYSKYNVPEGHWSLMLEVSES--K-YKP- 360 (484)
T ss_dssp HHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTT-CSCSEEECGGGTCGGGSCTTEEEEEEEEEEB--T-TBC-
T ss_pred HHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCC-CeEEEEEeecCCCcccCCCCeEEEEEEEecC--c-CCc-
Confidence 78889999999999999999865322 357888887654 355667777776653 4566666666432 2 223
Q ss_pred CCHHHHHHHHHHHHHhHcCCCC-CC-ceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcC---CCCCC-ChH
Q psy7673 445 QSKEYILDIACRYVHEILDMPR-TP-HAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGS---SYDGV-GVN 518 (541)
Q Consensus 445 ~~~e~~~~~~~~~l~~~~g~~~-~~-~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~---~~~g~-~v~ 518 (541)
.+++++++.++++|.++.++.+ ++ ....++||++++|+|++||..+++.+++.+... ||+++|. |..|+ +++
T Consensus 361 ~~d~~l~~~a~~~L~~~~~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~~~--~l~~~Gr~g~~~y~v~~~d 438 (484)
T 4dsg_A 361 VNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELMSR--CIYSRGRFGAWRYEVGNQD 438 (484)
T ss_dssp CCTTSHHHHHHHHHHHTTSCCTTCCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHT--TEEECSTTTTCCGGGCSHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCccceEEEEEEEEeCccccCCCccHHHHHHHHHHHHHhC--CcEeecCCcccccCCCChH
Confidence 6889999999999999977754 34 345799999999999999999999999888764 9999998 55554 899
Q ss_pred HHHHHHHHHHHHHh
Q psy7673 519 DVIALSKKAVESIK 532 (541)
Q Consensus 519 ~ai~sg~~aa~~i~ 532 (541)
+||.+|.++|++|+
T Consensus 439 ~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 439 HSFMQGVEAIDHVL 452 (484)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999995
No 41
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=99.88 E-value=2.8e-22 Score=204.87 Aligned_cols=224 Identities=15% Similarity=0.130 Sum_probs=173.6
Q ss_pred cccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEE-EEecCceeEeeCEEEEcCChhHHHhhhccc-----C
Q psy7673 295 VWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVK-VTLNNDQHIEANHVVSALPAPKLGMLLHKQ-----H 367 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~-v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~-----~ 367 (541)
.+.+.+|++.++++|++.+ +.|++|+++++|++|..++++|. |+++ |+++.||+||+|+|++.+.+++++. +
T Consensus 188 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~ 266 (425)
T 3ka7_A 188 TGIPEGGCKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAATAVLCSEALSKEAD 266 (425)
T ss_dssp CEEETTSHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHHHHHHTTTTCCTTTT
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhcCCcccccCC
Confidence 3678999999999999999 56889999999999999888886 6664 7789999999999999999998643 4
Q ss_pred chhHhhhcCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccC---CCcEEEEEEecCccCCcccCC
Q psy7673 368 PTLGNLLSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQ---ADWTILTVMMGGAWYDTYFKG 444 (541)
Q Consensus 368 ~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~---~~~~~l~~~~~g~~~~~~~~~ 444 (541)
+...+.+.++.+.+.+++++.++++.+ .+++++++.+ ...+.++++.|..++. .+..++++++...|. ..
T Consensus 267 ~~~~~~~~~~~~~~~~~v~l~~~~~~~--~~~~~~~~~~-~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~--~~-- 339 (425)
T 3ka7_A 267 AAYFKMVGTLQPSAGIKICLAADEPLV--GHTGVLLTPY-TRRINGVNEVTQADPELAPPGKHLTMCHQYVAPE--NV-- 339 (425)
T ss_dssp HHHHHHHHHCCCBEEEEEEEEESSCSS--CSSSEEECCS-SSSEEEEECGGGTCGGGSCTTCEEEEEEEEECGG--GG--
T ss_pred HHHHHHhhCcCCCceEEEEeecCCCcc--CcCEEEECCC-hhhcceEEeccCCCCCcCCCCCeEEEEEeccccc--cc--
Confidence 455677788999999999999987654 3455555543 3457788888887763 467777777754432 11
Q ss_pred CCHHHHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCC---CChHHHH
Q psy7673 445 QSKEYILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDG---VGVNDVI 521 (541)
Q Consensus 445 ~~~e~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g---~~v~~ai 521 (541)
...++.++.++++|+++++. ..+....+++|+.++|+|++|+..+.. ..++.+|||+||||+.| .+||+|+
T Consensus 340 ~~~~~~~~~~~~~l~~~~p~-~~~~~~~v~~~~~~~P~~~~~~~~~~~-----~~~p~~gL~laG~~~~~~gg~gv~~~~ 413 (425)
T 3ka7_A 340 KNLESEIEMGLEDLKEIFPG-KRYEVLLIQSYHDEWPVNRAASGTDPG-----NETPFSGLYVVGDGAKGKGGIEVEGVA 413 (425)
T ss_dssp GGHHHHHHHHHHHHHHHSTT-CCEEEEEEEEEBTTBCSBSSCTTCCCC-----SBCSSBTEEECSTTSCCTTCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCC-CceEEEEEEEECCCccccccccCCCCC-----CCCCcCCeEEeCCccCCCCCCccHHHH
Confidence 12355679999999999964 345667899999999999999753311 11344699999999954 8899999
Q ss_pred HHHHHHHHHHh
Q psy7673 522 ALSKKAVESIK 532 (541)
Q Consensus 522 ~sg~~aa~~i~ 532 (541)
.||+++|++|+
T Consensus 414 ~s~~~~~~~i~ 424 (425)
T 3ka7_A 414 LGVMSVMEKVL 424 (425)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhh
Confidence 99999999985
No 42
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=99.88 E-value=4.4e-22 Score=206.04 Aligned_cols=235 Identities=13% Similarity=0.074 Sum_probs=176.5
Q ss_pred cccccccHHHHHHHHHHhcc-C--------CcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhh--
Q psy7673 295 VWSVEGGLQTIVNTLGEHLS-N--------KVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLL-- 363 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~-~--------~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll-- 363 (541)
+..+.+|+++++++|++.+. . +++|+++++|++|.+++++|.|++.+|+++.||+||+|+|++++.+++
T Consensus 198 ~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~ 277 (472)
T 1b37_A 198 FVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQ 277 (472)
T ss_dssp EECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSE
T ss_pred eeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHHhccCCee
Confidence 34458999999999999883 2 468999999999999988999999999889999999999999999865
Q ss_pred --cccCchhHhhhcCCCCccEEEEEEeeCCCCCCC-CccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCc
Q psy7673 364 --HKQHPTLGNLLSSIEHVNVAVINLAYENIPMKQ-NAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDT 440 (541)
Q Consensus 364 --~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~ 440 (541)
|++++...++++++.|.++.++++.|++++|+. .++++++....+.....+....... ..+...++++++|..+..
T Consensus 278 ~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~l~~~~~~~~a~~ 356 (472)
T 1b37_A 278 FKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQ-YPDANVLLVTVTDEESRR 356 (472)
T ss_dssp EESCCCHHHHHHHHHSEEECEEEEEEECSSCCSCCSTTCSEEEECCSSTTSSCEEEECTTT-STTCCEEEEEEEHHHHHH
T ss_pred ECCCCCHHHHHHHHhcCCcceeEEEEECCCcCCCCCCCcceEEecccCCccceeeecccCC-CCCCCEEEEEechHHHHH
Confidence 455666678889999999999999999988875 3455555433322222221111111 123456777776654444
Q ss_pred ccCCCCHHHHHHHHHHHHHhHc-CCC-CCCceeEeeec------cCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCC
Q psy7673 441 YFKGQSKEYILDIACRYVHEIL-DMP-RTPHAQHVEIL------KACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSY 512 (541)
Q Consensus 441 ~~~~~~~e~~~~~~~~~l~~~~-g~~-~~~~~~~~~~w------~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~ 512 (541)
+.. ++++++.+.+++.|++++ |.. .+|....+++| +++++++.+|+.... ...+.++.++|||||+++
T Consensus 357 ~~~-~~~~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~---~~~l~~p~~~l~fAG~~t 432 (472)
T 1b37_A 357 IEQ-QSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYE---YDQLRAPVGRVYFTGEHT 432 (472)
T ss_dssp HHT-SCHHHHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHH---HHHHHCCBTTEEECSGGG
T ss_pred HHh-CCHHHHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhH---HHHHhccCCcEEEeeccc
Confidence 434 789999999999999999 654 56777888999 677777788875421 123446777999999998
Q ss_pred C---CCChHHHHHHHHHHHHHHhhh
Q psy7673 513 D---GVGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 513 ~---g~~v~~ai~sg~~aa~~i~~~ 534 (541)
. +++|++|+.||.++|++|+..
T Consensus 433 ~~~~~g~v~GA~~SG~~aA~~i~~~ 457 (472)
T 1b37_A 433 SEHYNGYVHGAYLSGIDSAEILINC 457 (472)
T ss_dssp CTTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHH
Confidence 4 558999999999999999554
No 43
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=99.88 E-value=2.4e-22 Score=207.17 Aligned_cols=230 Identities=17% Similarity=0.168 Sum_probs=178.1
Q ss_pred ccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCc-EEEEecCceeEeeCEEEEcCChhHHHhhh--cccCchh
Q psy7673 294 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKG-VKVTLNNDQHIEANHVVSALPAPKLGMLL--HKQHPTL 370 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~t~P~~~~~~ll--~~~~~~~ 370 (541)
..+.+.|||+.++++|++.+ |++|+++++|++|.+++++ |.|++ +|.++.||+||+|+|++++.+++ |++++..
T Consensus 206 ~~~~~~gG~~~l~~~l~~~l--g~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~l~~~p~lp~~~ 282 (453)
T 2yg5_A 206 LDKRVIGGMQQVSIRMAEAL--GDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNLYSRISYDPPLPRRQ 282 (453)
T ss_dssp TCEEETTCTHHHHHHHHHHH--GGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGGGGGSEEESCCCHHH
T ss_pred ceEEEcCChHHHHHHHHHhc--CCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHHHhcCEeCCCCCHHH
Confidence 35889999999999999988 3589999999999998888 99886 66789999999999999999886 5566677
Q ss_pred HhhhcCCCCccEEEEEEeeCCCCCCCCcc-EEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCCCHHH
Q psy7673 371 GNLLSSIEHVNVAVINLAYENIPMKQNAF-GFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQSKEY 449 (541)
Q Consensus 371 ~~~l~~~~~~~~~~v~l~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~~~e~ 449 (541)
.++++++.+.++.++++.|++++|+..++ |.+++. +.++ .++|+++.. ..+...+++++++.+++.+.. .++++
T Consensus 283 ~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~--~~~~-~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~-~~~~~ 357 (453)
T 2yg5_A 283 HQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGFGA--SEVV-QEVYDNTNH-EDDRGTLVAFVSDEKADAMFE-LSAEE 357 (453)
T ss_dssp HHHGGGEEECCEEEEEEEESSCGGGGGTEEEEEECT--TSSS-CEEEECCCT-TCSSEEEEEEEEHHHHHHHHH-SCHHH
T ss_pred HHHHhcCCCcceEEEEEEECCCCCCCCCCCceeecC--CCCe-EEEEeCCCC-CCCCCEEEEEeccHHHHHHhc-CCHHH
Confidence 78889999999999999999887766554 344322 2223 345665432 233468889988777666655 78899
Q ss_pred HHHHHHHHHHhHcCCC-CCCceeEeeeccC------C-CCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCC---CCChH
Q psy7673 450 ILDIACRYVHEILDMP-RTPHAQHVEILKA------C-IPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYD---GVGVN 518 (541)
Q Consensus 450 ~~~~~~~~l~~~~g~~-~~~~~~~~~~w~~------a-~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~---g~~v~ 518 (541)
+.+.+++.|++++|.. ..|....+++|.. + .|++.+|+..... ..+.++.++|||||+++. .++|+
T Consensus 358 ~~~~~l~~L~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~---~~~~~p~~~l~~aG~~~~~~~~g~v~ 434 (453)
T 2yg5_A 358 RKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYG---ADSRTPVGPIHFSCSDIAAEGYQHVD 434 (453)
T ss_dssp HHHHHHHHHHHHHCGGGGCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHG---GGTTCCBTTEEECCGGGCSTTTTSHH
T ss_pred HHHHHHHHHHHHhCccCCCccEEEEeecCCCCCCCCCCcCcCCCCccccch---HHHhCCcCceEEeecccccccccchH
Confidence 9999999999999864 4688888899963 2 2456788654322 234456789999999873 23799
Q ss_pred HHHHHHHHHHHHHhhh
Q psy7673 519 DVIALSKKAVESIKWQ 534 (541)
Q Consensus 519 ~ai~sg~~aa~~i~~~ 534 (541)
+|+.||.++|++|+..
T Consensus 435 gA~~SG~~aA~~i~~~ 450 (453)
T 2yg5_A 435 GAVRMGQRTAADIIAR 450 (453)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999543
No 44
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=99.87 E-value=9.3e-22 Score=212.03 Aligned_cols=228 Identities=15% Similarity=0.205 Sum_probs=180.4
Q ss_pred cccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHh----hhcccCchh
Q psy7673 295 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGM----LLHKQHPTL 370 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~~~~~ 370 (541)
.+.+.+|++.++++|++.+ +|+++++|++|.+++++|.|++.+|+++.||+||+|+|++++++ +.|++++..
T Consensus 526 ~~~~~~G~~~l~~aLa~gl----~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~ 601 (776)
T 4gut_A 526 HTLLTPGYSVIIEKLAEGL----DIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKK 601 (776)
T ss_dssp EEECTTCTHHHHHHHHTTS----CEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHH
T ss_pred eEEECChHHHHHHHHHhCC----cEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCCCHHH
Confidence 4567899999999999866 79999999999999889999999998899999999999999986 346777778
Q ss_pred HhhhcCCCCccEEEEEEeeCCCCCCC-----CccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCC
Q psy7673 371 GNLLSSIEHVNVAVINLAYENIPMKQ-----NAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQ 445 (541)
Q Consensus 371 ~~~l~~~~~~~~~~v~l~~~~~~~~~-----~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~ 445 (541)
.+++.++.|+++.++++.|++++|.. ..+|++.+..++..+.++++++. +..+..+|..+++|..+..+.. +
T Consensus 602 ~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~--p~g~~~vL~~~i~G~~a~~l~~-l 678 (776)
T 4gut_A 602 MKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMD--PQKKHSVLMSVIAGEAVASVRT-L 678 (776)
T ss_dssp HHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESC--TTSCSCEEEEEECTHHHHHHHT-S
T ss_pred HHHHHhCCCeeEEEEEEecCcccccccCCCCceEEeecCCcCCCceEEEEecCC--CCCCceEEEEEecchhHHHHHc-C
Confidence 88999999999999999999988863 34666665555556777777764 2334568888998877766655 8
Q ss_pred CHHHHHHHHHHHHHhHcCCC--CCCceeEeeeccC------CCCCCCCCHH-HHHHHHHHHHhhC-CCCEEEEcCCCC--
Q psy7673 446 SKEYILDIACRYVHEILDMP--RTPHAQHVEILKA------CIPQYTLGHA-ARVKDIQGYIDTH-QLPLYLTGSSYD-- 513 (541)
Q Consensus 446 ~~e~~~~~~~~~l~~~~g~~--~~~~~~~~~~w~~------a~p~~~~g~~-~~~~~~~~~l~~~-~~~l~laG~~~~-- 513 (541)
+++++++.+++.|++++|.. ++|....+++|.. ++..+.+|.. .... .+..+ .++|+|||+++.
T Consensus 679 sdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~----~L~~p~~grL~FAGE~Ts~~ 754 (776)
T 4gut_A 679 DDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYD----IIAEDIQGTVFFAGEATNRH 754 (776)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHH----HHHCCBTTTEEECSGGGCSS
T ss_pred CHHHHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccCCCCCccCCCCchhHHH----HHhCcCCCcEEEEehhhcCC
Confidence 99999999999999999864 4688899999953 2333334432 1122 23333 478999999995
Q ss_pred -CCChHHHHHHHHHHHHHHhh
Q psy7673 514 -GVGVNDVIALSKKAVESIKW 533 (541)
Q Consensus 514 -g~~v~~ai~sg~~aa~~i~~ 533 (541)
.+.|++|++||.++|++|++
T Consensus 755 ~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 755 FPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp SCSSHHHHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHHHHHh
Confidence 45699999999999999953
No 45
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.86 E-value=9e-21 Score=187.32 Aligned_cols=221 Identities=16% Similarity=0.188 Sum_probs=178.5
Q ss_pred cccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEe-eCEEEEcCChhHHHhhhcccCchhHhh
Q psy7673 295 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIE-ANHVVSALPAPKLGMLLHKQHPTLGNL 373 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~-ad~VI~t~P~~~~~~ll~~~~~~~~~~ 373 (541)
.|....|+..+.++|++.+ +|+++++|++|.+++++|.|++.+|+... ||.||+|+|++.+.++++. .+.+...
T Consensus 102 ~~~~~~~~~~l~~~l~~g~----~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~a~~vV~a~g~~~~~~~~~~-~~~l~~~ 176 (336)
T 1yvv_A 102 RWVGKPGMSAITRAMRGDM----PVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAA-APKLASV 176 (336)
T ss_dssp EEEESSCTHHHHHHHHTTC----CEECSCCEEEEEECSSCEEEEETTSCEEEEESEEEECSCHHHHGGGGTT-CHHHHHH
T ss_pred cEEcCccHHHHHHHHHccC----cEEecCEEEEEEEeCCEEEEEeCCCcCccccCEEEEcCCHHHHHHhhcc-CHHHHHH
Confidence 3566789999999998854 89999999999999999999998887664 9999999999999998865 4667788
Q ss_pred hcCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccCCCc--EEEEEEecCccCCcccCCCCHHHHH
Q psy7673 374 LSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQADW--TILTVMMGGAWYDTYFKGQSKEYIL 451 (541)
Q Consensus 374 l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~--~~l~~~~~g~~~~~~~~~~~~e~~~ 451 (541)
+..+.|.+++++++.|+.+.+.+ ..++..+ + ...+++++++.++.+.. ..++++..+.++.++.. .+++++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~-~~~~~l~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~ 250 (336)
T 1yvv_A 177 VAGVKMDPTWAVALAFETPLQTP-MQGCFVQ---D-SPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLD-ASREQVI 250 (336)
T ss_dssp HTTCCEEEEEEEEEEESSCCSCC-CCEEEEC---S-SSEEEEEEGGGSTTCCCSSEEEEEEECHHHHHHTTT-SCHHHHH
T ss_pred HhhcCccceeEEEEEecCCCCCC-CCeEEeC---C-CceeEEEecCcCCCCCCCCcEEEEEeCHHHHHHHHh-CCHHHHH
Confidence 89999999999999998765443 2344433 2 23567777666654332 57788887777777766 8899999
Q ss_pred HHHHHHHHhHcCCC-CCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHHHHH
Q psy7673 452 DIACRYVHEILDMP-RTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAVES 530 (541)
Q Consensus 452 ~~~~~~l~~~~g~~-~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~aa~~ 530 (541)
+.+++.+.+++|.. ..|.+..++||++++|+|..++. .+....++|+|||||+.|.++++|++||.++|+.
T Consensus 251 ~~l~~~l~~~lg~~~~~p~~~~~~rw~~a~~~~~~~~~--------~~~~~~~rl~laGDa~~g~gv~~a~~sg~~lA~~ 322 (336)
T 1yvv_A 251 EHLHGAFAELIDCTMPAPVFSLAHRWLYARPAGAHEWG--------ALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARR 322 (336)
T ss_dssp HHHHHHHHTTCSSCCCCCSEEEEEEEEEEEESSCCCCS--------CEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcEEEccccCccCCCCCCCCC--------eeecCCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999975 35888999999999999988763 1223457999999999999999999999999999
Q ss_pred Hhhh
Q psy7673 531 IKWQ 534 (541)
Q Consensus 531 i~~~ 534 (541)
|+..
T Consensus 323 l~~~ 326 (336)
T 1yvv_A 323 LLEH 326 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9544
No 46
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=99.86 E-value=1.3e-20 Score=196.46 Aligned_cols=226 Identities=9% Similarity=0.017 Sum_probs=173.3
Q ss_pred ccccccccHHHHHHHHHHhc-cCC-cEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhh--cccCch
Q psy7673 294 SVWSVEGGLQTIVNTLGEHL-SNK-VEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLL--HKQHPT 369 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l-~~~-~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll--~~~~~~ 369 (541)
..|.+.+|++.++++|++.+ ..| ++|+++++|++|.+++++|.|++.+|+.+.||+||+|+|++++.+++ |++++.
T Consensus 246 ~~~~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~i~~~p~lp~~ 325 (495)
T 2vvm_A 246 MSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLSTIQFSPALSTE 325 (495)
T ss_dssp HSEEETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGGGSEEESCCCHH
T ss_pred ceEEeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHhheeeCCCCCHH
Confidence 46889999999999999999 455 78999999999999888899999888789999999999999999985 556777
Q ss_pred hHhhhcCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCCCHHH
Q psy7673 370 LGNLLSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQSKEY 449 (541)
Q Consensus 370 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~~~e~ 449 (541)
..++++++.|.++.++++.|++++|. ++.++... +.++. .+|+.... +.+..+++++++ .... +++++
T Consensus 326 ~~~ai~~~~~~~~~kv~l~~~~~~~~--~~~g~~~~--~~~~~-~~~~~~~~-~~~~~vl~~~~~-~~~~-----~~~~e 393 (495)
T 2vvm_A 326 RISAMQAGHVSMCTKVHAEVDNKDMR--SWTGIAYP--FNKLC-YAIGDGTT-PAGNTHLVCFGN-SANH-----IQPDE 393 (495)
T ss_dssp HHHHHHHCCCCCCEEEEEEESCGGGG--GEEEEECS--SCSSC-EEEEEEEC-TTSCEEEEEEEC-STTC-----CCTTT
T ss_pred HHHHHHhcCCCceeEEEEEECCccCC--CceeEecC--CCCcE-EEecCCCC-CCCCeEEEEEeC-cccc-----CCCHH
Confidence 78889999999999999999986653 44444432 23443 34443322 234467777764 3221 23456
Q ss_pred HHHHHHHHHHhHcCCCCCCceeEeeecc------CCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCC---CCChHHH
Q psy7673 450 ILDIACRYVHEILDMPRTPHAQHVEILK------ACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYD---GVGVNDV 520 (541)
Q Consensus 450 ~~~~~~~~l~~~~g~~~~~~~~~~~~w~------~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~---g~~v~~a 520 (541)
..+.+++.|+++++...+|....+++|. ++++++.+|+.... ...+..+.++|||||+++. +..+++|
T Consensus 394 ~~~~~~~~L~~~~~~~~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~---~~~l~~p~~~l~fAGe~t~~~~~g~veGA 470 (495)
T 2vvm_A 394 DVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSEC---LQGLREKHGGVVFANSDWALGWRSFIDGA 470 (495)
T ss_dssp CHHHHHHHHHTTSTTSCCEEEEEECCTTTCTTTSSSSCCCCTTHHHHH---HHHHHCCBTTEEECCGGGCSSSTTSHHHH
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEeEcCCCCCCCCCccCcCCCcchhh---HHHHhCcCCCEEEechhhhcCCceEEEhH
Confidence 6788899999987654567888889994 68888999986432 2234456789999999985 4579999
Q ss_pred HHHHHHHHHHHhhh
Q psy7673 521 IALSKKAVESIKWQ 534 (541)
Q Consensus 521 i~sg~~aa~~i~~~ 534 (541)
++||.++|++|+..
T Consensus 471 i~SG~raA~~i~~~ 484 (495)
T 2vvm_A 471 IEEGTRAARVVLEE 484 (495)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999554
No 47
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=99.86 E-value=3.5e-21 Score=200.77 Aligned_cols=233 Identities=12% Similarity=0.125 Sum_probs=174.5
Q ss_pred cccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCce----eEeeCEEEEcCChhHHHhhh--ccc
Q psy7673 293 WSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQ----HIEANHVVSALPAPKLGMLL--HKQ 366 (541)
Q Consensus 293 ~~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~----~~~ad~VI~t~P~~~~~~ll--~~~ 366 (541)
...+.+.||+++|+++|++.++. +|+++++|++|.+++++|.|++.+|+ ++.||+||+|+|++.+.++. |++
T Consensus 231 ~~~~~~~gG~~~l~~~l~~~l~~--~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~p~L 308 (498)
T 2iid_A 231 KRFDEIVDGMDKLPTAMYRDIQD--KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPL 308 (498)
T ss_dssp CCEEEETTCTTHHHHHHHHHTGG--GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCC
T ss_pred cceEEeCCcHHHHHHHHHHhccc--ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHhheecCCCC
Confidence 34678999999999999999853 79999999999999888999876664 47999999999999998874 678
Q ss_pred CchhHhhhcCCCCccEEEEEEeeCCCCCCCCcc-EEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCC
Q psy7673 367 HPTLGNLLSSIEHVNVAVINLAYENIPMKQNAF-GFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQ 445 (541)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~ 445 (541)
++...++++++.|.++.+|++.|++++|...++ +.... .+.+...+.|++..++. +..+|++++.|..+..+.. +
T Consensus 309 p~~~~~ai~~l~~~~~~kv~l~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~s~~~p~-g~~~L~~~~~g~~a~~~~~-~ 384 (498)
T 2iid_A 309 LPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKST--TDLPSRFIYYPNHNFTN-GVGVIIAYGIGDDANFFQA-L 384 (498)
T ss_dssp CHHHHHHHHHCCEECEEEEEEEESSCGGGGGTCCSSEEE--ESSTTCEEECCSSCCTT-SCEEEEEEEEHHHHHTTTT-S
T ss_pred CHHHHHHHHhCCCcceeEEEEEeCCCCccCCCccCCccc--CCCCcceEEECCCCCCC-CCcEEEEEeCCccHhhhhc-C
Confidence 888889999999999999999999888765432 21211 12344566666644443 3557777877766655544 7
Q ss_pred CHHHHHHHHHHHHHhHcCCCCC-----CceeEeeeccC------CCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCC-
Q psy7673 446 SKEYILDIACRYVHEILDMPRT-----PHAQHVEILKA------CIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYD- 513 (541)
Q Consensus 446 ~~e~~~~~~~~~l~~~~g~~~~-----~~~~~~~~w~~------a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~- 513 (541)
+++++.+.++++|++++|++.. +....+++|.. ++..+.++.. ..+...+..+.++|||||+++.
T Consensus 385 ~~~~~~~~~l~~L~~~~g~~~~~~~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~---~~~~~~l~~p~~~l~fAGe~t~~ 461 (498)
T 2iid_A 385 DFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQF---QHFSDPLTASQGRIYFAGEYTAQ 461 (498)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHEEEEEEEEGGGCTTTCSSEECCCTTHH---HHHHHHHHCCBTTEEECSGGGSS
T ss_pred CHHHHHHHHHHHHHHHcCCChhhhhhhcCccEEEecCCCCCCCceeeecCCcch---HHHHHHHhCCCCcEEEEEccccc
Confidence 8999999999999999986431 12367789974 2222333332 2233345556789999999983
Q ss_pred -CCChHHHHHHHHHHHHHHhhh
Q psy7673 514 -GVGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 514 -g~~v~~ai~sg~~aa~~i~~~ 534 (541)
.+++++|+.||.++|++|+..
T Consensus 462 ~~g~~~GAi~SG~raA~~i~~~ 483 (498)
T 2iid_A 462 AHGWIDSTIKSGLRAARDVNLA 483 (498)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999554
No 48
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=99.85 E-value=5.2e-20 Score=187.68 Aligned_cols=214 Identities=16% Similarity=0.169 Sum_probs=159.6
Q ss_pred cccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhc--ccCchhH
Q psy7673 295 VWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLH--KQHPTLG 371 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~--~~~~~~~ 371 (541)
.+.+.+|+..++++|++.+ ..|++|+++++|++|..++++| |. .+|+++.||+||+|+|++.+.++++ ..++...
T Consensus 181 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V~-~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~ 258 (421)
T 3nrn_A 181 PGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEKKV-YT-RDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYL 258 (421)
T ss_dssp CEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-EE-TTCCEEECSEEEECSCHHHHHHHHCGGGSCHHHH
T ss_pred cceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-EE-eCCcEEEeCEEEECCCHHHHHHhcCcccCCHHHH
Confidence 4678999999999999999 5688999999999999888888 64 5677899999999999999999986 3555667
Q ss_pred hhhcCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccC---CCcEEEEEEecCccCCcccCCCCHH
Q psy7673 372 NLLSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQ---ADWTILTVMMGGAWYDTYFKGQSKE 448 (541)
Q Consensus 372 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~---~~~~~l~~~~~g~~~~~~~~~~~~e 448 (541)
+.+.++.+.++.++++.+++.+. .+++++++.+.. +.++.+.|..++. .+..+++++.. .. ..+++
T Consensus 259 ~~~~~~~~~~~~~v~l~~~~~~~--~~~~~~~~~~~~--~~~i~~~s~~~p~~ap~G~~~~~~~~~---~~----~~~~~ 327 (421)
T 3nrn_A 259 KQVDSIEPSEGIKFNLAVPGEPR--IGNTIVFTPGLM--INGFNEPSALDKSLAREGYTLIMAHMA---LK----NGNVK 327 (421)
T ss_dssp HHHHTCCCCCEEEEEEEEESSCS--SCSSEEECTTSS--SCEEECGGGTCGGGSCTTEEEEEEEEE---CT----TCCHH
T ss_pred HHHhCCCCCceEEEEEEEcCCcc--cCCeEEEcCCcc--eeeEeccCCCCCCcCCCCceEEEEEEe---ec----cccHH
Confidence 78889999999999999987643 345667766554 7788888887763 45666666552 11 13345
Q ss_pred HHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCC-Ch--HHHHHHHH
Q psy7673 449 YILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGV-GV--NDVIALSK 525 (541)
Q Consensus 449 ~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~-~v--~~ai~sg~ 525 (541)
+.++.++++|++++| ......+++|+.++|+|....... ++ .++ +|||+||||+.+. ++ |+|+.||.
T Consensus 328 ~~~~~~~~~L~~~~p---~~~~~~~~~~~~~~p~~~~~~~~~---~~---~~~-~gl~laGd~~~~~~g~~~~ga~~sg~ 397 (421)
T 3nrn_A 328 KAIEKGWEELLEIFP---EGEPLLAQVYRDGNPVNRTRAGLH---IE---WPL-NEVLVVGDGYRPPGGIEVDGIALGVM 397 (421)
T ss_dssp HHHHHHHHHHHHHCT---TCEEEEEEEC-------------C---CC---CCC-SSEEECSTTCCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CCeEEEeeeccCCCCcccccCCCC---CC---CCC-CcEEEECCcccCCCceeeehHHHHHH
Confidence 669999999999998 345567899999999996543222 21 245 7999999999877 56 99999999
Q ss_pred HHHHHH
Q psy7673 526 KAVESI 531 (541)
Q Consensus 526 ~aa~~i 531 (541)
+||+.|
T Consensus 398 ~aA~~l 403 (421)
T 3nrn_A 398 KALEKL 403 (421)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999998
No 49
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=99.84 E-value=7.3e-20 Score=191.70 Aligned_cols=232 Identities=15% Similarity=0.079 Sum_probs=174.3
Q ss_pred cccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhh
Q psy7673 295 VWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNL 373 (541)
Q Consensus 295 ~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~ 373 (541)
.+.++||+++++++|++.+ ..|++|+++++|++|..+++. |++.+|+++.||+||+|+|++.+.+++++ +....+
T Consensus 214 ~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~~~l~~~l~~--~~~~~~ 289 (513)
T 4gde_A 214 RFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAVDFLAEAMND--QELVGL 289 (513)
T ss_dssp EEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCHHHHHHHTTC--HHHHHH
T ss_pred eecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCHHHHHHhcCc--hhhHhh
Confidence 4567899999999999999 567899999999999886654 45678889999999999999999999864 455677
Q ss_pred hcCCCCccEEEEEEeeCCCCC--CCCccEEEecCCC--------------------CCCceEEEeecccccCC---CcEE
Q psy7673 374 LSSIEHVNVAVINLAYENIPM--KQNAFGFLVPPRE--------------------KLPILGVVFDSCCFEQA---DWTI 428 (541)
Q Consensus 374 l~~~~~~~~~~v~l~~~~~~~--~~~~~g~l~~~~~--------------------~~~~~~~~~~s~~~~~~---~~~~ 428 (541)
...+.|.++.+|++.++.... ..+...++++..+ ...+.+..|.+..++.. +...
T Consensus 290 ~~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (513)
T 4gde_A 290 TKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGP 369 (513)
T ss_dssp HTTCCEEEEEEEEEEEESSCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEECCC
T ss_pred hhcccCCceEEEEEEEeccccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCcce
Confidence 889999999999999965322 1222223322211 11233344444444331 2334
Q ss_pred EEEEecCccCCcccCCCCHHHHHHHHHHHHHhHcCCCCC--CceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEE
Q psy7673 429 LTVMMGGAWYDTYFKGQSKEYILDIACRYVHEILDMPRT--PHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLY 506 (541)
Q Consensus 429 l~~~~~g~~~~~~~~~~~~e~~~~~~~~~l~~~~g~~~~--~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~ 506 (541)
++.++++...++... +++|++++.++++|.++.++... +....++||++|+|+|++||.+.++.++..++. +|||
T Consensus 370 ~~~~~~~~~~~~~~~-~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~~--~~l~ 446 (513)
T 4gde_A 370 YWSIMLEVSESSMKP-VNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQD--KDIW 446 (513)
T ss_dssp EEEEEEEEEEBTTBC-CCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHH--TTEE
T ss_pred EEEEEecccchhccC-CCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHhh--cCcE
Confidence 555554444444444 88999999999999999887654 467889999999999999999999999888875 4999
Q ss_pred EEcCCC--CC--CChHHHHHHHHHHHHHHhh
Q psy7673 507 LTGSSY--DG--VGVNDVIALSKKAVESIKW 533 (541)
Q Consensus 507 laG~~~--~g--~~v~~ai~sg~~aa~~i~~ 533 (541)
++|..- .. .+++.|+.+|..||+.|+.
T Consensus 447 ~~GR~g~~~Y~~~n~D~a~~~g~~aa~~I~~ 477 (513)
T 4gde_A 447 SRGRFGSWRYEVGNQDHSFMLGVEAVDNIVN 477 (513)
T ss_dssp ECSTTTTCCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EecCCcccCcCCCCHHHHHHHHHHHHHHHHc
Confidence 999432 22 3799999999999999964
No 50
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=99.78 E-value=6.1e-18 Score=176.81 Aligned_cols=230 Identities=10% Similarity=0.113 Sum_probs=158.3
Q ss_pred ccccHHHHHHHHHHhccCCcEEeccceeeEEEEe-CCcEEEEecCceeEeeCEEEEcCChhHHHh-------------hh
Q psy7673 298 VEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFL-EKGVKVTLNNDQHIEANHVVSALPAPKLGM-------------LL 363 (541)
Q Consensus 298 ~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~-~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~-------------ll 363 (541)
..+ +++++++|++.+.. ++|++|++|++|.++ +++|.|++.+|+++.||+||+|+|+++++. +.
T Consensus 198 ~~g-~~~l~~~l~~~l~~-~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~ 275 (516)
T 1rsg_A 198 ALN-YDSVVQRIAQSFPQ-NWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQ 275 (516)
T ss_dssp ESC-HHHHHHHHHTTSCG-GGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEE
T ss_pred hhC-HHHHHHHHHHhCCC-CEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccceEec
Confidence 355 99999999999853 479999999999986 677999999998899999999999999963 34
Q ss_pred cccCchhHhhhcCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCc--------------------------------
Q psy7673 364 HKQHPTLGNLLSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPI-------------------------------- 411 (541)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~-------------------------------- 411 (541)
|++++...++++++.|+++.+|++.|++++|+....++........++
T Consensus 276 P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (516)
T 1rsg_A 276 PPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWS 355 (516)
T ss_dssp SCCCHHHHHHTTSSCCCCCEEEEEEESSCCSCCSCSEEEECCCCCHHHHHHHHHCCSHHHHHHHC---------CCCTTS
T ss_pred CCCCHHHHHHHHhCCCCcceEEEEEeCCCCCCCCCCcEEEeCCCCccchhhcccCcccchhhhccccccccccccccccc
Confidence 677888889999999999999999999999876532322211110000
Q ss_pred -eEEEeecccccCCCcEEEEEEecCccCCcccCCC--CHHHHHHH---HHHHHHhHcCC-------C-C-------CCc-
Q psy7673 412 -LGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQ--SKEYILDI---ACRYVHEILDM-------P-R-------TPH- 469 (541)
Q Consensus 412 -~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~--~~e~~~~~---~~~~l~~~~g~-------~-~-------~~~- 469 (541)
...+++.. ...+..+|.+++.|..+..... + +++++++. +++.+.+++|. + + .|.
T Consensus 356 ~~~~~~~~~--~~~~~~~L~~~~~g~~a~~~~~-l~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~ 432 (516)
T 1rsg_A 356 QPLFFVNLS--KSTGVASFMMLMQAPLTNHIES-IREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVL 432 (516)
T ss_dssp SCEEEEEHH--HHTSCSEEEEEECBTHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHTTCCCCEECCC-------CCSCEE
T ss_pred CceeEEEee--ecCCCcEEEEEecchHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhccccccccCCCCcccccccCCCcc
Confidence 00011100 1124457778888776654433 4 78887654 56666666652 1 1 144
Q ss_pred -eeEeeecc------CCCCCCCCCHHHHHHHHHHHH-hhCCCCEEEEcCCCC---CCChHHHHHHHHHHHHHHhhh
Q psy7673 470 -AQHVEILK------ACIPQYTLGHAARVKDIQGYI-DTHQLPLYLTGSSYD---GVGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 470 -~~~~~~w~------~a~p~~~~g~~~~~~~~~~~l-~~~~~~l~laG~~~~---g~~v~~ai~sg~~aa~~i~~~ 534 (541)
...+++|. +++..+.+|... ....+.+ ..+.++|||||+++. .+.|++|++||.++|++|+..
T Consensus 433 ~~~~~~~W~~dp~~~Gsys~~~~g~~~--~~~~~~l~~~~~~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~ 506 (516)
T 1rsg_A 433 RNIIVSNWTRDPYSRGAYSACFPGDDP--VDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDL 506 (516)
T ss_dssp EEEEECCTTTCTTTTTCCCCCBC------CHHHHHHHHCSSSSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCCCCCccCCCcCCCCCH--HHHHHHhccCCCCcEEEeccccccCCCccchhHHHHHHHHHHHHHHH
Confidence 66778994 566666677532 1111223 235679999999983 356999999999999999554
No 51
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.78 E-value=8.8e-19 Score=170.82 Aligned_cols=186 Identities=18% Similarity=0.233 Sum_probs=141.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA-------GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEID 84 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~-------~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d 84 (541)
..++.++||+||||||||++++++++.+ ..+++.+++.++.+.+.+.....+...|..+ .+++|||||+|
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid 140 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAY 140 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGG
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChh
Confidence 4556689999999999999999999988 3489999999999998898888888888776 45799999999
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCCHHHHHHHH
Q psy7673 85 ALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPNEQDRKEIL 159 (541)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~r~~il 159 (541)
.+...++. .......++.|+..++.. ..+++||+++|... .+++.+++ ||...+.|++|+.+++.+|+
T Consensus 141 ~l~~~~~~---~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il 213 (309)
T 3syl_A 141 YLYRPDNE---RDYGQEAIEILLQVMENN--RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIA 213 (309)
T ss_dssp GSCCCC------CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHH
T ss_pred hhccCCCc---ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHH
Confidence 99865432 233456778888888753 34578888887543 25789998 99999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCHHHHHhhhh------cCCC-CHHHHHHHHHHHHHHHHHHHhh
Q psy7673 160 LALTKQGKDPMMGEDVDFDKIAADER------CEGF-SGADLEQLVKEAREQAILEIVN 211 (541)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~-~~~dl~~l~~~a~~~a~~~~~~ 211 (541)
+.++...... . ++..+..++ .. ...+ +.+++.++++++...+..+...
T Consensus 214 ~~~l~~~~~~-~-~~~~~~~l~--~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 214 GHMLDDQNYQ-M-TPEAETALR--AYIGLRRNQPHFANARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp HHHHHHTTCE-E-CHHHHHHHH--HHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC-C-CHHHHHHHH--HHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999875321 1 111123333 22 1222 4899999999999888877664
No 52
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.76 E-value=3.4e-18 Score=166.77 Aligned_cols=216 Identities=24% Similarity=0.346 Sum_probs=145.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc-cccCc-hHHHHHHHHHHH----H-hcCCceEEEcCCcc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN-MYLGE-SERAVRQCFQRA----R-NSQPCVIFFDEIDA 85 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~-~~~~~-~~~~~~~~~~~~----~-~~~~~il~iDe~d~ 85 (541)
..+.++||+||||||||++++++++.++.+++.++|.++.. .+.+. ....++.++..+ . ...++||+|||+|.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 46789999999999999999999999999999999998765 33332 223445544422 1 12357999999999
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHhcCCC--------CCCCeEEEEec----CCCCCCCccccCCCCCCeEEEecCCCHH
Q psy7673 86 LCPKRSSLGDNNSSMRIVNQLLTEMDGFE--------GRGGVFLMAAT----NRPDIIDPAVMRPGRFDRILFVNLPNEQ 153 (541)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~vi~t~----~~~~~l~~~l~~~~r~~~~i~~~~p~~~ 153 (541)
+.+.............+.+.|+..+++.. ...+++||+++ +.+..+++++++ ||+..+.|++|+.+
T Consensus 128 l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~ 205 (310)
T 1ofh_A 128 ICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAA 205 (310)
T ss_dssp GSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHH
T ss_pred cCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHH
Confidence 98765432222222345677888887531 23467888884 466789999998 99988999999999
Q ss_pred HHHHHHHH----H-------HhcCCCCCCCCCCCHHHHHhhhhc-------CCCCHHHHHHHHHHHHHHHHHHHhhcccC
Q psy7673 154 DRKEILLA----L-------TKQGKDPMMGEDVDFDKIAADERC-------EGFSGADLEQLVKEAREQAILEIVNSVEN 215 (541)
Q Consensus 154 ~r~~il~~----~-------~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~dl~~l~~~a~~~a~~~~~~~~~~ 215 (541)
++.+|++. + +.........++..++.++ +.+ .+..+|++.++++++...+..+....
T Consensus 206 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~--- 280 (310)
T 1ofh_A 206 DFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIA--EAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM--- 280 (310)
T ss_dssp HHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHH--HHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGC---
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHH--HHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccc---
Confidence 99999983 2 1111110011112234444 333 24578999999999877665443211
Q ss_pred CCcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 216 DDQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 216 ~~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
......|+.+++.++++...
T Consensus 281 -------~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 281 -------NGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp -------TTCEEEECHHHHHHHTCSSS
T ss_pred -------cCCEEEEeeHHHHHHHHhhh
Confidence 11223599999999998653
No 53
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.75 E-value=8e-18 Score=168.27 Aligned_cols=194 Identities=21% Similarity=0.262 Sum_probs=136.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEeCccccccccCc------------------------------
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGI--NFISVKGPELLNMYLGE------------------------------ 58 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~--~~~~i~~~~l~~~~~~~------------------------------ 58 (541)
+..++.++||+||||||||++++++++.++. +++.++|..+.....+.
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld 145 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID 145 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhh
Confidence 4455689999999999999999999999964 78888876643322111
Q ss_pred -------------------hHHHHHHHHHHHHh----c-----CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHh
Q psy7673 59 -------------------SERAVRQCFQRARN----S-----QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEM 110 (541)
Q Consensus 59 -------------------~~~~~~~~~~~~~~----~-----~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l 110 (541)
....++..+..+.. . .|+||||||+|.+. ...++.|+..+
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~------------~~~~~~L~~~l 213 (368)
T 3uk6_A 146 VINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD------------IESFSFLNRAL 213 (368)
T ss_dssp HHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB------------HHHHHHHHHHT
T ss_pred hhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC------------hHHHHHHHHHh
Confidence 12233333333321 1 25799999999984 24556777777
Q ss_pred cCCCCCCCeEEEEec-----------CCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHH
Q psy7673 111 DGFEGRGGVFLMAAT-----------NRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDK 179 (541)
Q Consensus 111 ~~~~~~~~~~vi~t~-----------~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~ 179 (541)
+... .+++++++. |.+..+++.+++ ||.. +.|++|+.+++.+|++..+...... + ++..+..
T Consensus 214 e~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~-~-~~~~l~~ 286 (368)
T 3uk6_A 214 ESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVE-M-SEDAYTV 286 (368)
T ss_dssp TCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCC-B-CHHHHHH
T ss_pred hCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCC-C-CHHHHHH
Confidence 6532 235555554 246789999999 9965 8999999999999999998864321 1 2223455
Q ss_pred HHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 180 IAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 180 l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
++ ..+.+.+++++.++++.|...|..+.. ..|+.+|+.++++.+
T Consensus 287 l~--~~~~~G~~r~~~~ll~~a~~~A~~~~~----------------~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 287 LT--RIGLETSLRYAIQLITAASLVCRKRKG----------------TEVQVDDIKRVYSLF 330 (368)
T ss_dssp HH--HHHHHSCHHHHHHHHHHHHHHHHHTTC----------------SSBCHHHHHHHHHHS
T ss_pred HH--HHhcCCCHHHHHHHHHHHHHHHHHhCC----------------CCCCHHHHHHHHHHh
Confidence 55 566635899999999999888865432 349999999999875
No 54
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.74 E-value=8.7e-18 Score=160.42 Aligned_cols=179 Identities=23% Similarity=0.308 Sum_probs=126.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc-ccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL-NMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPK 89 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~ 89 (541)
+..++.++||+||||||||++++++++.++.+++.++|.+.. +.........++.+|..+....+++|+|||+|.+.+.
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 139 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDY 139 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTC
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhcc
Confidence 366788999999999999999999999999999999987532 2112223356777888877777899999999999765
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCC-CCCeEEEEecCCCCCCCc-cccCCCCCCeEEEecCCCH-HHHHHHHHHHHhcC
Q psy7673 90 RSSLGDNNSSMRIVNQLLTEMDGFEG-RGGVFLMAATNRPDIIDP-AVMRPGRFDRILFVNLPNE-QDRKEILLALTKQG 166 (541)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vi~t~~~~~~l~~-~l~~~~r~~~~i~~~~p~~-~~r~~il~~~~~~~ 166 (541)
+.. .......+++.|...++.... ..+++||+|||.++.+++ .+++ ||...|.+++++. ++...++.. ..
T Consensus 140 ~~~--~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~ 212 (272)
T 1d2n_A 140 VPI--GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---LG 212 (272)
T ss_dssp BTT--TTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---HT
T ss_pred CCC--ChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---cC
Confidence 432 122345667777777776542 345789999999887777 5666 9988888866655 444444433 21
Q ss_pred CCCCCCCCCCHHHHHhhhhcCCC----CHHHHHHHHHHHH
Q psy7673 167 KDPMMGEDVDFDKIAADERCEGF----SGADLEQLVKEAR 202 (541)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~~~g~----~~~dl~~l~~~a~ 202 (541)
..++.++..++ ..+.|| +.+++.++++.+.
T Consensus 213 ----~~~~~~~~~l~--~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 213 ----NFKDKERTTIA--QQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp ----CSCHHHHHHHH--HHHTTSEEEECHHHHHHHHHHHT
T ss_pred ----CCCHHHHHHHH--HHhcCCCccccHHHHHHHHHHHh
Confidence 11233456666 677787 5677777777663
No 55
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.73 E-value=1.7e-17 Score=169.82 Aligned_cols=205 Identities=22% Similarity=0.265 Sum_probs=150.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeCccccccccCchHHHHHHHHHHH---HhcCCceEEEcCCcc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGPELLNMYLGESERAVRQCFQRA---RNSQPCVIFFDEIDA 85 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~il~iDe~d~ 85 (541)
|..+++++||+||||||||++++++|++++ .+++.++++++.+.+.++.+. +...|..+ ....|++|||||+|.
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~ 137 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTE 137 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhh
Confidence 566789999999999999999999999998 999999999999999999887 88999998 677889999999999
Q ss_pred ccCCCCCCCC----------------------------------------------------------------------
Q psy7673 86 LCPKRSSLGD---------------------------------------------------------------------- 95 (541)
Q Consensus 86 l~~~~~~~~~---------------------------------------------------------------------- 95 (541)
+++++.....
T Consensus 138 l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~ 217 (456)
T 2c9o_A 138 LTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEA 217 (456)
T ss_dssp EEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSS
T ss_pred cccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcce
Confidence 8855432200
Q ss_pred ------C-C-----------------------------------------------------------------------
Q psy7673 96 ------N-N----------------------------------------------------------------------- 97 (541)
Q Consensus 96 ------~-~----------------------------------------------------------------------- 97 (541)
. .
T Consensus 218 ~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~ 297 (456)
T 2c9o_A 218 EEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPG 297 (456)
T ss_dssp SSEECCCCSCSEEEEEEEEEEEHHHHHHTC-----------------------------CHHHHHHHHHHHTTSEEEEEC
T ss_pred eEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHhccccccce
Confidence 0 0
Q ss_pred ---------hhHHHHHHHHHHhcCCCCCCCeEEEEe---------cC---CCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 98 ---------SSMRIVNQLLTEMDGFEGRGGVFLMAA---------TN---RPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 98 ---------~~~~~~~~l~~~l~~~~~~~~~~vi~t---------~~---~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
......+.|++.++.- ..+++|+++ ++ .+..+++.+++ ||.. +.|++|+.++..
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~--~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~ 372 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESS--IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMK 372 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTST--TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhcc--CCCEEEEecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHH
Confidence 0012345555555532 223544455 32 26678999999 9975 699999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhc-CCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERC-EGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFD 235 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 235 (541)
++|+..+...... . ++..+..++ ... .| +++....+++.|...|..+... .|+.+|+.
T Consensus 373 ~iL~~~~~~~~~~-~-~~~~~~~i~--~~a~~g-~~r~a~~ll~~a~~~A~~~~~~----------------~v~~~~v~ 431 (456)
T 2c9o_A 373 QIIKIRAQTEGIN-I-SEEALNHLG--EIGTKT-TLRYSVQLLTPANLLAKINGKD----------------SIEKEHVE 431 (456)
T ss_dssp HHHHHHHHHHTCC-B-CHHHHHHHH--HHHHHS-CHHHHHHTHHHHHHHHHHTTCS----------------SBCHHHHH
T ss_pred HHHHHHHHHhCCC-C-CHHHHHHHH--HHccCC-CHHHHHHHHHHHHHHHhhcCCC----------------ccCHHHHH
Confidence 9999988743211 1 111233444 444 45 8999999999998888655432 49999999
Q ss_pred HHHHhcC
Q psy7673 236 IALKRIK 242 (541)
Q Consensus 236 ~al~~~~ 242 (541)
+++..+.
T Consensus 432 ~~~~~~~ 438 (456)
T 2c9o_A 432 EISELFY 438 (456)
T ss_dssp HHHHHSC
T ss_pred HHHHHhc
Confidence 9998774
No 56
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.72 E-value=1.6e-16 Score=156.74 Aligned_cols=188 Identities=21% Similarity=0.263 Sum_probs=138.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRS 91 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~ 91 (541)
..++.++||+||||||||++++++++.++.+++.++|..+. ....+...+.. ...+++|||||+|.+.
T Consensus 52 ~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~---- 119 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN--LSEGDILFIDEIHRLS---- 119 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT--CCTTCEEEEETGGGCC----
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh--ccCCCEEEEechhhcC----
Confidence 35667899999999999999999999999999999997653 12233333332 3456899999999984
Q ss_pred CCCCCChhHHHHHHHHHHhcCCC----------------CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHH
Q psy7673 92 SLGDNNSSMRIVNQLLTEMDGFE----------------GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDR 155 (541)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~~----------------~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r 155 (541)
...+..|+..++... ...++++|++||....+++++++ ||+..+.+++|+.+++
T Consensus 120 --------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~ 189 (338)
T 3pfi_A 120 --------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSEL 189 (338)
T ss_dssp --------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHH
T ss_pred --------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHH
Confidence 234556666666432 11247999999999899999998 9999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHH
Q psy7673 156 KEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFD 235 (541)
Q Consensus 156 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 235 (541)
..+++..+...... .++.....++ ..+.| +++.+.++++.+...+..+.. ..|+.+++.
T Consensus 190 ~~il~~~~~~~~~~--~~~~~~~~l~--~~~~G-~~r~l~~~l~~~~~~a~~~~~----------------~~i~~~~~~ 248 (338)
T 3pfi_A 190 ALILQKAALKLNKT--CEEKAALEIA--KRSRS-TPRIALRLLKRVRDFADVNDE----------------EIITEKRAN 248 (338)
T ss_dssp HHHHHHHHHHTTCE--ECHHHHHHHH--HTTTT-CHHHHHHHHHHHHHHHHHTTC----------------SEECHHHHH
T ss_pred HHHHHHHHHhcCCC--CCHHHHHHHH--HHHCc-CHHHHHHHHHHHHHHHHhhcC----------------CccCHHHHH
Confidence 99999998864311 1122244445 45555 688999999988766653211 248999999
Q ss_pred HHHHhcC
Q psy7673 236 IALKRIK 242 (541)
Q Consensus 236 ~al~~~~ 242 (541)
.++....
T Consensus 249 ~~~~~~~ 255 (338)
T 3pfi_A 249 EALNSLG 255 (338)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9987654
No 57
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=99.71 E-value=5.4e-17 Score=165.55 Aligned_cols=222 Identities=14% Similarity=0.147 Sum_probs=151.1
Q ss_pred ccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhh
Q psy7673 294 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNL 373 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~ 373 (541)
..|++.+|+++++++|++.++ .+|+++++|++|.+++++|.|++.+|+ +.||+||+|+|++++.+++++. +...+.
T Consensus 197 ~~~~~~~g~~~l~~~l~~~l~--~~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~~~~~~l~~~-~~~~~~ 272 (424)
T 2b9w_A 197 DLWTWADGTQAMFEHLNATLE--HPAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLEKFLDYSDAD-DDEREY 272 (424)
T ss_dssp CCBCCTTCHHHHHHHHHHHSS--SCCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHHHHTTSBCCC-HHHHHH
T ss_pred ceEEeCChHHHHHHHHHHhhc--ceEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHHHHhhccCCC-HHHHHH
Confidence 357899999999999999984 369999999999998888999888885 8999999999999998887653 333456
Q ss_pred hcCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCce-EEEeecccccCCCcEEEEEEecCccCCcccCCCCHHHHHH
Q psy7673 374 LSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPIL-GVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQSKEYILD 452 (541)
Q Consensus 374 l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~-~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~~~e~~~~ 452 (541)
+.++.+.++.......... +.++.++|.+...... ..+++...++......+++|+++.. ..+.. .+++++.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~-~~~~~~~~ 346 (424)
T 2b9w_A 273 FSKIIHQQYMVDACLVKEY----PTISGYVPDNMRPERLGHVMVYYHRWADDPHQIITTYLLRNH-PDYAD-KTQEECRQ 346 (424)
T ss_dssp HTTCEEEEEEEEEEEESSC----CSSEEECGGGGSGGGTTSCCEEEECCTTCTTSCEEEEEECCB-TTBCC-CCHHHHHH
T ss_pred HhcCCcceeEEEEEEeccC----CcccccccCCCCCcCCCcceEEeeecCCCCceEEEEEeccCC-Ccccc-cChHHHHH
Confidence 6778777755333333321 1234556543322122 1233444444444557777776643 44444 77899999
Q ss_pred HHHHHHHhHcCCCCCCceeEeeeccC----CCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHHH
Q psy7673 453 IACRYVHEILDMPRTPHAQHVEILKA----CIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAV 528 (541)
Q Consensus 453 ~~~~~l~~~~g~~~~~~~~~~~~w~~----a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~aa 528 (541)
.+++.|.+ ++.+. +.......|.. +.++|..|+..++..+ ...++|||||+|+..+..|+|++||.++|
T Consensus 347 ~v~~~l~~-l~~~~-~~~~~~~~w~~~p~~~~~~~~~G~~~~~~~~-----~~~~~l~~aG~~~~~g~~e~a~~Sg~~aA 419 (424)
T 2b9w_A 347 MVLDDMET-FGHPV-EKIIEEQTWYYFPHVSSEDYKAGWYEKVEGM-----QGRRNTFYAGEIMSFGNFDEVCHYSKDLV 419 (424)
T ss_dssp HHHHHHHH-TTCCE-EEEEEEEEEEEEEECCHHHHHTTHHHHHHHT-----TTGGGEEECSGGGSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCcc-cccccccceeeeeccCHHHHhccHHHHHHHH-----hCCCCceEeccccccccHHHHHHHHHHHH
Confidence 99999998 66532 11122345642 2334555554444332 12358999999997667899999999999
Q ss_pred HHHh
Q psy7673 529 ESIK 532 (541)
Q Consensus 529 ~~i~ 532 (541)
++|+
T Consensus 420 ~~~l 423 (424)
T 2b9w_A 420 TRFF 423 (424)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9884
No 58
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.71 E-value=2.9e-17 Score=171.11 Aligned_cols=206 Identities=20% Similarity=0.257 Sum_probs=135.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc---------cccCchHHHHHHHHHHHHhcCCceEEEcCCc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN---------MYLGESERAVRQCFQRARNSQPCVIFFDEID 84 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d 84 (541)
++.+++|+||||||||+++++++..++.++..++|..+.. .+.+.....+...|..+....| +|||||+|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid 185 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEID 185 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhh
Confidence 5678999999999999999999999999999999976543 3344445555666666554444 99999999
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHhcCCCC-------------CCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCC
Q psy7673 85 ALCPKRSSLGDNNSSMRIVNQLLTEMDGFEG-------------RGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPN 151 (541)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------------~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~ 151 (541)
.+..+.+. ...+.|++.++.... ..+++||+|+|.++.++++|++ ||. .|.|+.|+
T Consensus 186 ~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~ 254 (543)
T 3m6a_A 186 KMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYT 254 (543)
T ss_dssp SCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCC
T ss_pred hhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCC
Confidence 99765432 234566666654221 1568999999999999999999 994 79999999
Q ss_pred HHHHHHHHHHHHhc-----CCCCCCCCCCC---HHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCC
Q psy7673 152 EQDRKEILLALTKQ-----GKDPMMGEDVD---FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDD 223 (541)
Q Consensus 152 ~~~r~~il~~~~~~-----~~~~~~~~~~~---~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~ 223 (541)
.+++.+|++.++-. .......-.++ +..++. ..+.....|+|++.++++...+..+.... .
T Consensus 255 ~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~-~~~~~~~vR~L~~~i~~~~~~aa~~~~~~----------~ 323 (543)
T 3m6a_A 255 EIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIR-YYTREAGVRSLERQLAAICRKAAKAIVAE----------E 323 (543)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHH-HHCCCSSSHHHHHHHHHHHHHHHHHHHTT----------C
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHH-hCChhhchhHHHHHHHHHHHHHHHHHHhc----------C
Confidence 99999999887622 11100001112 223221 23333467888888888877776665432 1
Q ss_pred ccccccCHHHHHHHHHhcC
Q psy7673 224 TEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 224 ~~~~~i~~~d~~~al~~~~ 242 (541)
.....|+.+++.+++...+
T Consensus 324 ~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 324 RKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp CSCCEECTTTTHHHHCSCC
T ss_pred CcceecCHHHHHHHhCCcc
Confidence 2235689999999987543
No 59
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.71 E-value=2.8e-17 Score=163.69 Aligned_cols=215 Identities=24% Similarity=0.350 Sum_probs=143.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccccc-ccCch-HHHHHHHHHHH----HhcCCceEEEcCCcccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-YLGES-ERAVRQCFQRA----RNSQPCVIFFDEIDALC 87 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~-~~~~~-~~~~~~~~~~~----~~~~~~il~iDe~d~l~ 87 (541)
++.++||+||||||||++++++|+.++.+++.++|.++... +.|.. ...+..++..+ ....++||||||+|.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 67799999999999999999999999999999999987643 55554 44556666554 33456899999999998
Q ss_pred CCCCCCCCCC--hhHHHHHHHHHHhcCC-------------------CCCCCeEEEEecCCC----------CC------
Q psy7673 88 PKRSSLGDNN--SSMRIVNQLLTEMDGF-------------------EGRGGVFLMAATNRP----------DI------ 130 (541)
Q Consensus 88 ~~~~~~~~~~--~~~~~~~~l~~~l~~~-------------------~~~~~~~vi~t~~~~----------~~------ 130 (541)
+.+....... ....+++.|+..+++. ....++++|++++.. ..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf 209 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 209 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC----
T ss_pred ccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCc
Confidence 7755432222 1234788898888832 122345666666532 11
Q ss_pred -----------------------------CCccccCCCCCCeEEEecCCCHHHHHHHHHH----HHhc-------CCCCC
Q psy7673 131 -----------------------------IDPAVMRPGRFDRILFVNLPNEQDRKEILLA----LTKQ-------GKDPM 170 (541)
Q Consensus 131 -----------------------------l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~----~~~~-------~~~~~ 170 (541)
+.++|.+ ||+.++.|.+|+.+++.+|++. ++.. .....
T Consensus 210 ~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l 287 (363)
T 3hws_A 210 GATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDL 287 (363)
T ss_dssp --------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEE
T ss_pred cccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceE
Confidence 6788887 9999999999999999999986 3221 11100
Q ss_pred CCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHH
Q psy7673 171 MGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALK 239 (541)
Q Consensus 171 ~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 239 (541)
..++..++.++.......+.+|+|+++++++...+..+.... .......|+.+++++.+.
T Consensus 288 ~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~---------~~~~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 288 EFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSM---------EDVEKVVIDESVIDGQSE 347 (363)
T ss_dssp EECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTC---------CCSEEEECHHHHTTCCSC
T ss_pred EECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccc---------cCCceeEEcHHHHhCcCC
Confidence 011112344442224456778999999999988887654221 111344677777766553
No 60
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=99.70 E-value=4.8e-17 Score=171.58 Aligned_cols=240 Identities=8% Similarity=-0.057 Sum_probs=160.3
Q ss_pred cccccccccHHHHHHHHHHhccCCcEEeccceee--EEEEeCCc-------EEEE-ecCce--eEeeCEEEEcCChhHHH
Q psy7673 293 WSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCT--NLEFLEKG-------VKVT-LNNDQ--HIEANHVVSALPAPKLG 360 (541)
Q Consensus 293 ~~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~--~I~~~~~~-------~~v~-~~~g~--~~~ad~VI~t~P~~~~~ 360 (541)
...+.+.||+++|+++|++.+..+..|+++++|+ +|.+++++ |+|+ +.+|+ ++.||+||+|+|++.+.
T Consensus 337 ~~~~~i~GG~~~L~~aLa~~l~~g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~ 416 (721)
T 3ayj_A 337 NEYTLPVTENVEFIRNLFLKAQNVGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLT 416 (721)
T ss_dssp CEECCSSSSTHHHHHHHHHHHHHHTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHH
T ss_pred cceeEECCcHHHHHHHHHHhcccCCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHh
Confidence 3468999999999999999972223699999999 99987655 8884 45665 78999999999999996
Q ss_pred h------h-----------------------hcc-c-C-------chhHhhhcCCCCccEEEEEEee-----CCCCCCCC
Q psy7673 361 M------L-----------------------LHK-Q-H-------PTLGNLLSSIEHVNVAVINLAY-----ENIPMKQN 397 (541)
Q Consensus 361 ~------l-----------------------l~~-~-~-------~~~~~~l~~~~~~~~~~v~l~~-----~~~~~~~~ 397 (541)
. + .++ + + +...++++++.|.+..||++.| ++++|...
T Consensus 417 ~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~~ 496 (721)
T 3ayj_A 417 PIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQW 496 (721)
T ss_dssp HHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCEE
T ss_pred hccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCccccc
Confidence 4 2 133 3 4 5677899999999999999999 88888865
Q ss_pred -c-cEEEecCCCCCCceEEEe-ec----ccccCCCcEEEEEEecCccCCcc------cCCCCHH-------HHHHHHHHH
Q psy7673 398 -A-FGFLVPPREKLPILGVVF-DS----CCFEQADWTILTVMMGGAWYDTY------FKGQSKE-------YILDIACRY 457 (541)
Q Consensus 398 -~-~g~l~~~~~~~~~~~~~~-~s----~~~~~~~~~~l~~~~~g~~~~~~------~~~~~~e-------~~~~~~~~~ 457 (541)
+ ..+.. .++.++..+.+ .+ +..++..+.++..|..|.-+..+ .. ++++ .+++.++++
T Consensus 497 ~g~~i~~s--~TD~~~r~~~~~p~p~~~d~~~~~~gvlL~sYtwg~dA~~~~~~~g~~~-~~~~er~~~~~~~~~~~l~~ 573 (721)
T 3ayj_A 497 RGEPIKAV--VSDSGLAASYVVPSPIVEDGQAPEYSSLLASYTWEDDSTRLRHDFGLYP-QNPATETGTADGMYRTMVNR 573 (721)
T ss_dssp TTEECCEE--EETTTTEEEEEEECSCC----CCSEEEEEEEEEETHHHHHHHTTCCSSS-EESSSSSCCCHHHHHHHHHH
T ss_pred CCCCceee--ecCCCcceEEEeccCcccccCCCCCcEEEEEEeCccchhhhhccccccC-CChHHhhhhhhHHHHHHHHH
Confidence 1 11111 23345544433 21 11122334566666655433222 11 2333 448999999
Q ss_pred HH--hHcCCCC--------------CCceeEeeecc-----CCCCCCCCCHHHHHHHHHHH-----HhhCCCCEEEEcCC
Q psy7673 458 VH--EILDMPR--------------TPHAQHVEILK-----ACIPQYTLGHAARVKDIQGY-----IDTHQLPLYLTGSS 511 (541)
Q Consensus 458 l~--~~~g~~~--------------~~~~~~~~~w~-----~a~p~~~~g~~~~~~~~~~~-----l~~~~~~l~laG~~ 511 (541)
|. ++++... .+.....+.|. +|+..+.+|+......+.++ +..+.++|||||++
T Consensus 574 la~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~dW~~dps~Gaf~~~~pgq~~~~~l~~~~~~~~~~~~~~gri~fAGe~ 653 (721)
T 3ayj_A 574 AYRYVKYAGASNAQPWWFYQLLAEARTADRFVFDWTTNKTAGGFKLDMTGDHHQSNLCFRYHTHALAASLDNRFFIASDS 653 (721)
T ss_dssp TCCEECCTTCSSCEECHHHHHHHTSCSTTCEEEEGGGSTTSSSEECCBTTTHHHHHHHHHGGGGGGCTTTCCCEEECSGG
T ss_pred HhhhccCccccccccchhhhhhhhcccCceEEEeCCCCCCCCccccCCCccchhhhhhhhhhhhccccCCCCCEEEeehh
Confidence 98 6665322 13445778884 44555667762211112222 23456799999999
Q ss_pred C--CCCChHHHHHHHHHHHHHHhhhh
Q psy7673 512 Y--DGVGVNDVIALSKKAVESIKWQH 535 (541)
Q Consensus 512 ~--~g~~v~~ai~sg~~aa~~i~~~~ 535 (541)
+ .++++++|+.||.+||..|+...
T Consensus 654 ~S~~~GWieGAl~Sa~~Aa~~i~~~~ 679 (721)
T 3ayj_A 654 YSHLGGWLEGAFMSALNAVAGLIVRA 679 (721)
T ss_dssp GSSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCceehHHHHHHHHHHHHHHHHh
Confidence 8 36689999999999999995543
No 61
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.68 E-value=4.4e-16 Score=156.70 Aligned_cols=202 Identities=21% Similarity=0.184 Sum_probs=138.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCccccccc----------------cCc-hHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLNMY----------------LGE-SERAVRQ 65 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~~~----------------~~~-~~~~~~~ 65 (541)
...+.+++|+||||||||++++.+++.+ +..+++++|....+.. .+. ....+..
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 120 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYER 120 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 3567789999999999999999999988 8899999997643211 111 2233444
Q ss_pred HHHHHHhc-CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC---CCCCccccCCCCC
Q psy7673 66 CFQRARNS-QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP---DIIDPAVMRPGRF 141 (541)
Q Consensus 66 ~~~~~~~~-~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~---~~l~~~l~~~~r~ 141 (541)
++..+... .+.+|+|||+|.+.... .....+..++..++......++.+|+++|.+ +.+++.+.+ ||
T Consensus 121 l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~ 191 (387)
T 2v1u_A 121 LVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SL 191 (387)
T ss_dssp HHHHHTTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TT
T ss_pred HHHHHhccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cC
Confidence 45444333 36799999999985431 1234555666655543214568899999877 678889988 88
Q ss_pred Ce-EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcC---CCCHHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy7673 142 DR-ILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCE---GFSGADLEQLVKEAREQAILEIVNSVENDD 217 (541)
Q Consensus 142 ~~-~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~ 217 (541)
.. .+.|++|+.+++.+|++..+.........++.....++ ..+. | .++.+.++++.+...+..+..
T Consensus 192 ~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~------- 261 (387)
T 2v1u_A 192 GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCA--ALAAREHG-DARRALDLLRVAGEIAERRRE------- 261 (387)
T ss_dssp TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHH--HHHHSSSC-CHHHHHHHHHHHHHHHHHTTC-------
T ss_pred CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHH--HHHHHhcc-CHHHHHHHHHHHHHHHHHcCC-------
Confidence 74 89999999999999999988741111112222345555 4555 6 688899999999776653311
Q ss_pred cCCCCCccccccCHHHHHHHHHhc
Q psy7673 218 QAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 218 ~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
..|+.+++.+|++..
T Consensus 262 ---------~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 262 ---------ERVRREHVYSARAEI 276 (387)
T ss_dssp ---------SCBCHHHHHHHHHHH
T ss_pred ---------CCcCHHHHHHHHHHH
Confidence 349999999999876
No 62
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.68 E-value=6.7e-16 Score=151.40 Aligned_cols=188 Identities=22% Similarity=0.320 Sum_probs=133.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSS 92 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~ 92 (541)
..+.++||+||+|||||++++++++.++.+++.++|..+.. ...+...+.. ....+++|||||+|.+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~-~~~~~~~l~lDEi~~l~~---- 104 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILAN-SLEEGDILFIDEIHRLSR---- 104 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTT-TCCTTCEEEETTTTSCCH----
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHH-hccCCCEEEEECCccccc----
Confidence 45678999999999999999999999999999999987632 1122222221 024568999999998842
Q ss_pred CCCCChhHHHHHHHHHHhcCCC----------------CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 93 LGDNNSSMRIVNQLLTEMDGFE----------------GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~~----------------~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
..+..|+..++... ...++.+|++||.+..+++.+.+ ||...+.+++|+.+++.
T Consensus 105 --------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~ 174 (324)
T 1hqc_A 105 --------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELA 174 (324)
T ss_dssp --------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHH
T ss_pred --------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHH
Confidence 23345555554321 11357899999999999999998 99889999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
.+++..+...+.. . ++..+..++ ..+.| .++.+.++++.+...+..+ ....|+.+++..
T Consensus 175 ~~l~~~~~~~~~~-~-~~~~~~~l~--~~~~G-~~r~l~~~l~~~~~~a~~~----------------~~~~i~~~~~~~ 233 (324)
T 1hqc_A 175 QGVMRDARLLGVR-I-TEEAALEIG--RRSRG-TMRVAKRLFRRVRDFAQVA----------------GEEVITRERALE 233 (324)
T ss_dssp HHHHHHHHTTTCC-C-CHHHHHHHH--HHSCS-CHHHHHHHHHHHTTTSTTT----------------SCSCCCHHHHHH
T ss_pred HHHHHHHHhcCCC-C-CHHHHHHHH--HHccC-CHHHHHHHHHHHHHHHHHh----------------cCCCCCHHHHHH
Confidence 9999998865321 1 222244455 55666 6789988888775444211 123588999998
Q ss_pred HHHhcC
Q psy7673 237 ALKRIK 242 (541)
Q Consensus 237 al~~~~ 242 (541)
++....
T Consensus 234 ~~~~~~ 239 (324)
T 1hqc_A 234 ALAALG 239 (324)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 887653
No 63
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.68 E-value=7.5e-17 Score=163.81 Aligned_cols=195 Identities=15% Similarity=0.257 Sum_probs=135.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPK 89 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~ 89 (541)
+.+++|+||||+|||++++++++.+ +.+++++++.++..++...........|.......+.+|+|||+|.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 6789999999999999999999988 88899999988754433222211112233322336789999999998643
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCccccCCCCCC--eEEEecCCCHHHHHHHHHHHHh
Q psy7673 90 RSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI---IDPAVMRPGRFD--RILFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~~ 164 (541)
. .....|+..++........+||++.+.+.. +++.+++ ||. ..+.+++|+.++|.+|++..+.
T Consensus 210 ~----------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 210 T----------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp H----------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred h----------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 1 123344454443333444566665555544 7889988 885 7899999999999999999987
Q ss_pred cCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCC
Q psy7673 165 QGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKP 243 (541)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 243 (541)
..+. .+.++ .+..++ ..+.| +.|++.++++.+...+... . ..|+.+++.++++...+
T Consensus 278 ~~~~-~i~~e-~l~~la--~~~~g-n~R~l~~~L~~~~~~a~~~---~--------------~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 278 IEHG-ELPEE-VLNFVA--ENVDD-NLRRLRGAIIKLLVYKETT---G--------------KEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HHTC-CCCTT-HHHHHH--HHCCS-CHHHHHHHHHHHHHHHHHS---S--------------SCCCHHHHHHHTSTTTC
T ss_pred HcCC-CCCHH-HHHHHH--HhcCC-CHHHHHHHHHHHHHHHHHh---C--------------CCCCHHHHHHHHHHHhh
Confidence 5432 22232 356666 66666 7899999999987776421 1 24999999999987753
No 64
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.68 E-value=4.4e-16 Score=159.09 Aligned_cols=216 Identities=13% Similarity=0.129 Sum_probs=155.5
Q ss_pred cccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhh--cccCchhHhhh
Q psy7673 297 SVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLL--HKQHPTLGNLL 374 (541)
Q Consensus 297 ~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll--~~~~~~~~~~l 374 (541)
.+.+|+..+++++++.+ + +|+++++|++|.+++++|.|++.+|+++.||+||+|+|++++.++. |++++...+++
T Consensus 201 ~~~~g~~~l~~~~~~~~--g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~ 277 (431)
T 3k7m_X 201 VFSNGSADLVDAMSQEI--P-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVI 277 (431)
T ss_dssp EETTCTHHHHHHHHTTC--S-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHH
T ss_pred hcCCcHHHHHHHHHhhC--C-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHH
Confidence 67999999999999877 3 7999999999999888999999888889999999999999999885 66777777888
Q ss_pred cCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccCCcccCCCCHHHHHHHH
Q psy7673 375 SSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWYDTYFKGQSKEYILDIA 454 (541)
Q Consensus 375 ~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~~~~~~~~~~e~~~~~~ 454 (541)
..+.+....++++.|+.+++ ++.. . . .+....+++... ...+..++..++.|.. ....+.+ .+
T Consensus 278 ~~~~~~~~~kv~~~~~~~~~---~i~~-~-~---d~~~~~~~~~~~-~~~~~~~l~~~~~g~~----~~~~~~~----~~ 340 (431)
T 3k7m_X 278 EEGHGGQGLKILIHVRGAEA---GIEC-V-G---DGIFPTLYDYCE-VSESERLLVAFTDSGS----FDPTDIG----AV 340 (431)
T ss_dssp HHCCCCCEEEEEEEEESCCT---TEEE-E-B---SSSSSEEEEEEE-CSSSEEEEEEEEETTT----CCTTCHH----HH
T ss_pred HhCCCcceEEEEEEECCCCc---CceE-c-C---CCCEEEEEeCcC-CCCCCeEEEEEecccc----CCCCCHH----HH
Confidence 88899999999999987652 2211 1 1 122233444432 2245678888886654 2213333 34
Q ss_pred HHHHHhHcCCCCCCceeEeeec------cCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCC---CCChHHHHHHHH
Q psy7673 455 CRYVHEILDMPRTPHAQHVEIL------KACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYD---GVGVNDVIALSK 525 (541)
Q Consensus 455 ~~~l~~~~g~~~~~~~~~~~~w------~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~---g~~v~~ai~sg~ 525 (541)
.+.|+++++. ..|.....++| ++++..+.+|.... ....+..+.++|||||..+. .+.|++|++||.
T Consensus 341 ~~~l~~~~~~-~~~~~~~~~~W~~d~~~~G~~~~~~~g~~~~---~~~~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~ 416 (431)
T 3k7m_X 341 KDAVLYYLPE-VEVLGIDYHDWIADPLFEGPWVAPRVGQFSR---VHKELGEPAGRIHFVGSDVSLEFPGYIEGALETAE 416 (431)
T ss_dssp HHHHHHHCTT-CEEEEEECCCTTTCTTTSSSSCCCCTTTTTT---SSGGGGSCBTTEEECSGGGCSSSTTSHHHHHHHHH
T ss_pred HHHHHHhcCC-CCccEeEecccCCCCCCCCCCCCcCCCCCcc---cHHHHhCCCCcEEEEehhhhccCCeEehHHHHHHH
Confidence 5567777653 23666777899 35666677775321 22234456779999996663 356999999999
Q ss_pred HHHHHHhhhhc
Q psy7673 526 KAVESIKWQHW 536 (541)
Q Consensus 526 ~aa~~i~~~~~ 536 (541)
++|++||..+-
T Consensus 417 raa~~i~~~~~ 427 (431)
T 3k7m_X 417 CAVNAILHSHH 427 (431)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHhhhc
Confidence 99999987653
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.8e-16 Score=151.93 Aligned_cols=184 Identities=14% Similarity=0.153 Sum_probs=129.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCcccccc----------c------cCchHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELLNM----------Y------LGESERAVR 64 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~~~----------~------~~~~~~~~~ 64 (541)
....+.+++|+||||||||++++.+++++ ...++++||..+.+. . .+.....+.
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~ 120 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALN 120 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 35688999999999999999999999998 457899999775432 1 233455677
Q ss_pred HHHHHH--HhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCccccCC
Q psy7673 65 QCFQRA--RNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI----IDPAVMRP 138 (541)
Q Consensus 65 ~~~~~~--~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~----l~~~l~~~ 138 (541)
..|... ....+.||+|||+|.|. . .+++..|+++.. ....++.||+++|..+. +++.+++
T Consensus 121 ~~f~~~~~~~~~~~ii~lDE~d~l~-~----------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 121 FYITNVPKAKKRKTLILIQNPENLL-S----------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHHHSCGGGSCEEEEEEECCSSSC-C----------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHHHhhhccCCceEEEEecHHHhh-c----------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 777764 34456899999999996 1 145566665443 24567899999998764 4455666
Q ss_pred CCCC-eEEEecCCCHHHHHHHHHHHHhcCCCCC-----------------------CCC-------CCC---HHHHHhhh
Q psy7673 139 GRFD-RILFVNLPNEQDRKEILLALTKQGKDPM-----------------------MGE-------DVD---FDKIAADE 184 (541)
Q Consensus 139 ~r~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~-----------------------~~~-------~~~---~~~l~~~~ 184 (541)
||. .+|.|++++.+|..+|++..+....... ..+ .++ ++.+| +
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A--~ 263 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIA--K 263 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHH--H
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHH--H
Confidence 886 6899999999999999999988632110 000 122 33334 3
Q ss_pred ---hcCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy7673 185 ---RCEGFSGADLEQLVKEAREQAILEIVNS 212 (541)
Q Consensus 185 ---~~~g~~~~dl~~l~~~a~~~a~~~~~~~ 212 (541)
...| ..|...++|++|...|..+...+
T Consensus 264 ~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k 293 (318)
T 3te6_A 264 NVANVSG-STEKAFKICEAAVEISKKDFVRK 293 (318)
T ss_dssp HHHHHHC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCC-hHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344 56777789999999998876654
No 66
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=99.66 E-value=3.1e-15 Score=155.91 Aligned_cols=243 Identities=14% Similarity=0.125 Sum_probs=127.4
Q ss_pred ccccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEE-EEecCceeEeeCEEEEcCChhHHHh-hhcccC--c
Q psy7673 294 SVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVK-VTLNNDQHIEANHVVSALPAPKLGM-LLHKQH--P 368 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~-v~~~~g~~~~ad~VI~t~P~~~~~~-ll~~~~--~ 368 (541)
..|.++|||++++++|++.+ +.|++|++|++|++|..++++++ |++.+|+++.||+||++++++.+.+ |++..+ .
T Consensus 212 G~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~~ 291 (501)
T 4dgk_A 212 GVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAV 291 (501)
T ss_dssp CEEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC----------------
T ss_pred CeEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccch
Confidence 46789999999999999999 67899999999999999988876 8889999999999999998887754 554432 2
Q ss_pred hhHhhhcCCC-CccEEEEEEeeCCCCCCCCccEEEecCCCC--------------CCceEEEeecccc---cCCCcEEEE
Q psy7673 369 TLGNLLSSIE-HVNVAVINLAYENIPMKQNAFGFLVPPREK--------------LPILGVVFDSCCF---EQADWTILT 430 (541)
Q Consensus 369 ~~~~~l~~~~-~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~--------------~~~~~~~~~s~~~---~~~~~~~l~ 430 (541)
.....+.+.. ..+..++++.++........+...+..+.. .+...+...|... .+.+...++
T Consensus 292 ~~~~~~~~~~~~~s~~~~~~~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~ 371 (501)
T 4dgk_A 292 KQSNKLQTKRMSNSLFVLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYY 371 (501)
T ss_dssp -----------CCEEEEEEEEESSCCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEE
T ss_pred hhhhhhhccccCCceeEEEecccCCccccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEE
Confidence 2233444444 456788888887654343333333322111 0111222222221 234566666
Q ss_pred EEecCccCCc---ccCCCCHHHHHHHHHHHHHhHcC--CCCCCceeEee---eccCCCCC-----CCCCHHHHH-HHHHH
Q psy7673 431 VMMGGAWYDT---YFKGQSKEYILDIACRYVHEILD--MPRTPHAQHVE---ILKACIPQ-----YTLGHAARV-KDIQG 496 (541)
Q Consensus 431 ~~~~g~~~~~---~~~~~~~e~~~~~~~~~l~~~~g--~~~~~~~~~~~---~w~~a~p~-----~~~g~~~~~-~~~~~ 496 (541)
+++...+... ... ...+++.+.+++.|.+.+. .....+...+. .|++-+.. |...+.... ..++.
T Consensus 372 ~~~~~p~~~~~~~~~~-~~~~~~~~~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP 450 (501)
T 4dgk_A 372 VLAPVPHLGTANLDWT-VEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRP 450 (501)
T ss_dssp EEEEECCTTTSCCCHH-HHHHHHHHHHHHHHHHHTCTTHHHHEEEEEEECTTTTC-------------------------
T ss_pred EEEecCccccccccHH-HHHHHHHHHHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhccccCC
Confidence 6653322111 001 2246778888888887552 21222222221 12221111 111111000 01111
Q ss_pred -HHhhCCCCEEEEcCCC-CCCChHHHHHHHHHHHHHHhhhhcc
Q psy7673 497 -YIDTHQLPLYLTGSSY-DGVGVNDVIALSKKAVESIKWQHWG 537 (541)
Q Consensus 497 -~l~~~~~~l~laG~~~-~g~~v~~ai~sg~~aa~~i~~~~~~ 537 (541)
...++.+|||+||+|. .|.||++|+.||+.+|++||....+
T Consensus 451 ~~~~t~i~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~dL~g 493 (501)
T 4dgk_A 451 HNRDKTITNLYLVGAGTHPGAGIPGVIGSAKATAGLMLEDLIG 493 (501)
T ss_dssp -----CCTTEEECCCH------HHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCEEEECCCCCCcccHHHHHHHHHHHHHHHHHHhcC
Confidence 1124578999999998 4889999999999999999776443
No 67
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.65 E-value=7.3e-16 Score=151.02 Aligned_cols=193 Identities=16% Similarity=0.207 Sum_probs=129.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
.+.+++|+||||||||++++++++.+ +.++++++|.++...+.+.........|.... ..+++|+|||+|.+..+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~ 114 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE 114 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh
Confidence 56789999999999999999999998 89999999988755443332222112222222 246899999999986421
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCccccCCCCCC--eEEEecCCCHHHHHHHHHHHHhc
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD---IIDPAVMRPGRFD--RILFVNLPNEQDRKEILLALTKQ 165 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~---~l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~~~ 165 (541)
.....++..++........+|+++++.+. .+++.+.+ ||. ..+.+++ +.+++.+|++..+..
T Consensus 115 ----------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 115 ----------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp ----------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence 12233444433322334456777766655 68899988 885 6799999 999999999999986
Q ss_pred CCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHH---HHHHHhhcccCCCcCCCCCcccccc-CHHHHHHHHHhc
Q psy7673 166 GKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQ---AILEIVNSVENDDQAGIDDTEQVTI-GFRHFDIALKRI 241 (541)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~---a~~~~~~~~~~~~~~~~~~~~~~~i-~~~d~~~al~~~ 241 (541)
.+. .+. +..+..++ ..+ | ..+++.++++.+... ++. .. ....| +.+++.+++...
T Consensus 182 ~~~-~l~-~~~l~~l~--~~~-g-~~r~l~~~l~~~~~~~~~~l~-~~--------------~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 182 FNL-ELR-KEVIDYLL--ENT-K-NVREIEGKIKLIKLKGFEGLE-RK--------------ERKERDKLMQIVEFVANY 240 (324)
T ss_dssp TTC-CCC-HHHHHHHH--HHC-S-SHHHHHHHHHHHHHHCHHHHH-HH--------------HHHHHHHHHHHHHHHHHH
T ss_pred cCC-CCC-HHHHHHHH--HhC-C-CHHHHHHHHHHHHHcCHHHhc-cc--------------cccCCCCHHHHHHHHHHH
Confidence 432 122 22255555 566 5 678999888887665 111 00 01247 888888888753
No 68
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.64 E-value=8.3e-16 Score=155.74 Aligned_cols=187 Identities=18% Similarity=0.277 Sum_probs=128.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHH----hcCCceEEEcCCccccCCC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRAR----NSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~il~iDe~d~l~~~~ 90 (541)
..++||+||||||||++++++++.++.+++.+++.... ...++.++..+. ...+.+|||||+|.+....
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~ 122 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ 122 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH
Confidence 36899999999999999999999999999999975432 223444444433 3457899999999985432
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecC--CCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN--RPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD 168 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~--~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~ 168 (541)
++.|+..++. ..+++|++|+ ....+++++++ |+. ++.|++|+.+++..+++..+.....
T Consensus 123 ------------q~~LL~~le~----~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~ 183 (447)
T 3pvs_A 123 ------------QDAFLPHIED----GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTR 183 (447)
T ss_dssp --------------CCHHHHHT----TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTT
T ss_pred ------------HHHHHHHHhc----CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhh
Confidence 2356677764 3466666663 33578999998 885 7889999999999999999986321
Q ss_pred CCC-----CCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCC
Q psy7673 169 PMM-----GEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKP 243 (541)
Q Consensus 169 ~~~-----~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 243 (541)
... .++..++.++ ..+.| ..|++.++++.+...+..+ ......|+.+++.+++.....
T Consensus 184 ~~~~~~~~i~~~al~~L~--~~~~G-d~R~lln~Le~a~~~a~~~--------------~~~~~~It~e~v~~~l~~~~~ 246 (447)
T 3pvs_A 184 GYGGQDIVLPDETRRAIA--ELVNG-DARRALNTLEMMADMAEVD--------------DSGKRVLKPELLTEIAGERSA 246 (447)
T ss_dssp SSTTSSEECCHHHHHHHH--HHHCS-CHHHHHHHHHHHHHHSCBC--------------TTSCEECCHHHHHHHHTCCCC
T ss_pred hhccccCcCCHHHHHHHH--HHCCC-CHHHHHHHHHHHHHhcccc--------------cCCCCccCHHHHHHHHhhhhh
Confidence 110 1111244444 55556 6788888888876544200 012246999999999987654
Q ss_pred C
Q psy7673 244 S 244 (541)
Q Consensus 244 ~ 244 (541)
.
T Consensus 247 ~ 247 (447)
T 3pvs_A 247 R 247 (447)
T ss_dssp C
T ss_pred c
Confidence 3
No 69
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=3.3e-15 Score=150.19 Aligned_cols=193 Identities=22% Similarity=0.261 Sum_probs=131.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh-----------CCcEEEEeCcccc-ccc-----------------cCc-hHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA-----------GINFISVKGPELL-NMY-----------------LGE-SER 61 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~-----------~~~~~~i~~~~l~-~~~-----------------~~~-~~~ 61 (541)
...+.+++|+||+|||||++++++++++ +.++++++|.... ... .+. ...
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 121 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGE 121 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHH
Confidence 3557799999999999999999999988 8999999987643 110 011 123
Q ss_pred HHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHH-HHHHHHHhcCCCCCCCeEEEEecCCC---CCCCccccC
Q psy7673 62 AVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRI-VNQLLTEMDGFEGRGGVFLMAATNRP---DIIDPAVMR 137 (541)
Q Consensus 62 ~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~vi~t~~~~---~~l~~~l~~ 137 (541)
.+..++..+....+ +|+|||+|.+...... .. +..|+.. . .++.||+++|.+ +.+++.+++
T Consensus 122 ~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~--------~~~l~~l~~~----~--~~~~iI~~t~~~~~~~~l~~~l~s 186 (384)
T 2qby_B 122 YIDKIKNGTRNIRA-IIYLDEVDTLVKRRGG--------DIVLYQLLRS----D--ANISVIMISNDINVRDYMEPRVLS 186 (384)
T ss_dssp HHHHHHHHHSSSCE-EEEEETTHHHHHSTTS--------HHHHHHHHTS----S--SCEEEEEECSSTTTTTTSCHHHHH
T ss_pred HHHHHHHHhccCCC-EEEEECHHHhccCCCC--------ceeHHHHhcC----C--cceEEEEEECCCchHhhhCHHHHh
Confidence 34444444443333 9999999998643211 12 3333322 2 568899999876 678888888
Q ss_pred CCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcC---CCCHHHHHHHHHHHHHHHHHHHhhccc
Q psy7673 138 PGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCE---GFSGADLEQLVKEAREQAILEIVNSVE 214 (541)
Q Consensus 138 ~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~dl~~l~~~a~~~a~~~~~~~~~ 214 (541)
||...+.|++|+.++..++++..+.........++..+..++ +.+. | .++.+.++++.|...+. .
T Consensus 187 --r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~G-~~r~a~~~l~~a~~~a~----~--- 254 (384)
T 2qby_B 187 --SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIA--AISAKEHG-DARKAVNLLFRAAQLAS----G--- 254 (384)
T ss_dssp --TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHH--HHHHTTCC-CHHHHHHHHHHHHHHTT----S---
T ss_pred --cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHH--HHHHhccC-CHHHHHHHHHHHHHHhc----C---
Confidence 887799999999999999999988742111112222244555 4555 5 56777888888866653 1
Q ss_pred CCCcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 215 NDDQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 215 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
...|+.+++.++++...
T Consensus 255 -----------~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 255 -----------GGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp -----------SSCCCHHHHHHHHHHHH
T ss_pred -----------CCccCHHHHHHHHHHHh
Confidence 13599999999998763
No 70
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.63 E-value=6e-15 Score=147.15 Aligned_cols=154 Identities=20% Similarity=0.275 Sum_probs=100.4
Q ss_pred ceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC--------CCCCeEEEEec----CCCCCCCccccCCCCCCe
Q psy7673 76 CVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--------GRGGVFLMAAT----NRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 76 ~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~vi~t~----~~~~~l~~~l~~~~r~~~ 143 (541)
.+|++||+|++..+....+......-+++.|+..++... ...++++||+. +.+.++.|.|++ ||+.
T Consensus 252 ~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i 329 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPI 329 (444)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCE
T ss_pred CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccce
Confidence 589999999998764422111222347789999999742 34578999987 234445578888 9999
Q ss_pred EEEecCCCHHHHHHHHHH-----------HHhcCCCCCCCCCCCHHHHHhh-----hhcCCCCHHHHHHHHHHHHHHHHH
Q psy7673 144 ILFVNLPNEQDRKEILLA-----------LTKQGKDPMMGEDVDFDKIAAD-----ERCEGFSGADLEQLVKEAREQAIL 207 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~-----------~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~dl~~l~~~a~~~a~~ 207 (541)
++.|+.++.++..+|+.. .+...+.....++-.+..++.. ..|....+|.|++++.++......
T Consensus 330 ~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~ 409 (444)
T 1g41_A 330 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 409 (444)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHh
Confidence 999999999999999931 2221111111112223444421 245677889999999888777665
Q ss_pred HHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 208 EIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
+.... ......|+.+++.+.+...
T Consensus 410 ~~~~~----------~~~~~~i~~~~v~~~l~~~ 433 (444)
T 1g41_A 410 SASDM----------NGQTVNIDAAYVADALGEV 433 (444)
T ss_dssp HGGGC----------TTCEEEECHHHHHHHHTTT
T ss_pred hcccc----------CCCeEEEeHHHHHHhcCcc
Confidence 54321 1234679999999887654
No 71
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.62 E-value=2.1e-15 Score=141.16 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=123.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
.+.+++|+||+|||||++++++++++ +.+++++++.++........ .. ...+.+|+|||+|.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~vliiDe~~~~~~~~ 120 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALL--------EG--LEQFDLICIDDVDAVAGHP 120 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGG--------TT--GGGSSEEEEETGGGGTTCH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH--------Hh--ccCCCEEEEeccccccCCH
Confidence 67899999999999999999999887 47899999988765432111 11 1346899999999985331
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCe-EEEEecCCCC---CCCccccCCCCCC--eEEEecCCCHHHHHHHHHHHHh
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFEGRGGV-FLMAATNRPD---IIDPAVMRPGRFD--RILFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~vi~t~~~~~---~l~~~l~~~~r~~--~~i~~~~p~~~~r~~il~~~~~ 164 (541)
.....|+..++.......+ +|++++..+. .+.+.+.+ ||. ..+.+++|+.+++.++++..+.
T Consensus 121 ----------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 121 ----------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp ----------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 1122344433332223334 4444444443 34577777 775 7899999999999999999988
Q ss_pred cCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHH
Q psy7673 165 QGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALK 239 (541)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 239 (541)
..+.. + ++.....++ ..+.| +.+++.++++.+...+..+. ..|+.++++++++
T Consensus 189 ~~~~~-~-~~~~~~~l~--~~~~g-~~r~l~~~l~~~~~~a~~~~-----------------~~It~~~v~~~l~ 241 (242)
T 3bos_A 189 MRGLQ-L-PEDVGRFLL--NRMAR-DLRTLFDVLDRLDKASMVHQ-----------------RKLTIPFVKEMLR 241 (242)
T ss_dssp HTTCC-C-CHHHHHHHH--HHTTT-CHHHHHHHHHHHHHHHHHHT-----------------CCCCHHHHHHHHT
T ss_pred HcCCC-C-CHHHHHHHH--HHccC-CHHHHHHHHHHHHHHHHHhC-----------------CCCcHHHHHHHhh
Confidence 64321 1 122244445 55655 78999999998877764331 2499999999875
No 72
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.62 E-value=2.3e-15 Score=150.54 Aligned_cols=216 Identities=19% Similarity=0.262 Sum_probs=132.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc-cccCch-HHHHHHHHHHH----HhcCCceEEEcCCccc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN-MYLGES-ERAVRQCFQRA----RNSQPCVIFFDEIDAL 86 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~-~~~~~~-~~~~~~~~~~~----~~~~~~il~iDe~d~l 86 (541)
.++.++||+||||||||++++++++.++.+++.++|..+.. .+.+.. ...+...+... ....++||||||+|.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 45678999999999999999999999999999999988752 333332 33444444432 2345689999999999
Q ss_pred cCCCCCCC--CCChhHHHHHHHHHHhcCCC-------------------CCCCeEEEEecCCC-----------------
Q psy7673 87 CPKRSSLG--DNNSSMRIVNQLLTEMDGFE-------------------GRGGVFLMAATNRP----------------- 128 (541)
Q Consensus 87 ~~~~~~~~--~~~~~~~~~~~l~~~l~~~~-------------------~~~~~~vi~t~~~~----------------- 128 (541)
...+.... ........++.|+..+++.. ...++++|+++|..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~ 229 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF 229 (376)
T ss_dssp --------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSC
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCC
Confidence 76632211 11112346788888887531 12456778777620
Q ss_pred ------------------------CCCCccccCCCCCCeEEEecCCCHHHHHHHHHH----HHh-------cCCCCCCCC
Q psy7673 129 ------------------------DIIDPAVMRPGRFDRILFVNLPNEQDRKEILLA----LTK-------QGKDPMMGE 173 (541)
Q Consensus 129 ------------------------~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~----~~~-------~~~~~~~~~ 173 (541)
..+.+++.+ |++.++.|++++.++...|+.. ++. ........+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (376)
T 1um8_A 230 TQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFE 307 (376)
T ss_dssp CCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEEC
T ss_pred CchhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEEC
Confidence 125577777 9988999999999999999962 221 111111111
Q ss_pred CCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHh
Q psy7673 174 DVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKR 240 (541)
Q Consensus 174 ~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 240 (541)
+-.+..++..........|.+.++++++...+..+.... ......|+.+++.++++.
T Consensus 308 ~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~----------~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 308 EEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKL----------KGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG----------TTSEEEECHHHHTTSSCC
T ss_pred HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCC----------CCCEEEEeHHHhcCCCCc
Confidence 112344441112223578999999999988887664432 112356899998875543
No 73
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.61 E-value=1.2e-14 Score=134.23 Aligned_cols=177 Identities=19% Similarity=0.205 Sum_probs=123.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHHHHHHHHHHHH------hcCCceEEEcC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRAR------NSQPCVIFFDE 82 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~il~iDe 82 (541)
...+++|+||+|||||++++.+++.+ ...++.+++.+..+. ..+...+.... ...+.+|+|||
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe 110 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDE 110 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEET
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeC
Confidence 33459999999999999999999886 456888888654321 12222222221 24578999999
Q ss_pred CccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHH
Q psy7673 83 IDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLAL 162 (541)
Q Consensus 83 ~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~ 162 (541)
+|.+.. ...+.|+..++.. ..++.+|+++|.+..+++.+.+ |+. .+.+++|+.++..++++..
T Consensus 111 ~~~l~~------------~~~~~l~~~l~~~--~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~ 173 (226)
T 2chg_A 111 ADALTA------------DAQAALRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEI 173 (226)
T ss_dssp GGGSCH------------HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHH
T ss_pred hhhcCH------------HHHHHHHHHHHhc--CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHH
Confidence 999843 2344555555542 3457888899988889999998 886 8999999999999999998
Q ss_pred HhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHH
Q psy7673 163 TKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALK 239 (541)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 239 (541)
+...+.. .++.....++ ..+.| .++.+.++++.+...+ ..|+.+|+++++.
T Consensus 174 ~~~~~~~--~~~~~~~~l~--~~~~g-~~r~l~~~l~~~~~~~---------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 174 CEKEGVK--ITEDGLEALI--YISGG-DFRKAINALQGAAAIG---------------------EVVDADTIYQITA 224 (226)
T ss_dssp HHHHTCC--BCHHHHHHHH--HHHTT-CHHHHHHHHHHHHHTC---------------------SCBCHHHHHHHHH
T ss_pred HHHcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHhcC---------------------ceecHHHHHHHhc
Confidence 8753321 1122234444 55656 6777777777664332 1499999999886
No 74
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=8e-15 Score=147.35 Aligned_cols=201 Identities=19% Similarity=0.240 Sum_probs=135.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEeCcccccc----------------ccCc-hHHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA------GINFISVKGPELLNM----------------YLGE-SERAVRQCFQ 68 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~------~~~~~~i~~~~l~~~----------------~~~~-~~~~~~~~~~ 68 (541)
...+.+++|+||+|||||++++.+++.+ +..+++++|...... ..+. .......++.
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVK 121 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 3557789999999999999999999988 889999998643211 0111 2233444554
Q ss_pred HHHhcC-CceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC---CCCCccccCCCCCC-e
Q psy7673 69 RARNSQ-PCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP---DIIDPAVMRPGRFD-R 143 (541)
Q Consensus 69 ~~~~~~-~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~---~~l~~~l~~~~r~~-~ 143 (541)
.+.... |.+|+|||+|.+..... ...+..++..++.. ...++.+|++++.+ ..+++.+.+ ||. .
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~ 190 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEE 190 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTE
T ss_pred HHhccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCe
Confidence 444433 78999999999864421 12455666666544 34568888888876 457778877 775 5
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcC---CCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCC
Q psy7673 144 ILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCE---GFSGADLEQLVKEAREQAILEIVNSVENDDQAG 220 (541)
Q Consensus 144 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~ 220 (541)
.+.+++++.++..++++..+.........++-....++ ..+. | .++.+.++++.+...+..+..
T Consensus 191 ~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~---------- 257 (386)
T 2qby_A 191 EIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCA--ALAAREHG-DARRALDLLRVSGEIAERMKD---------- 257 (386)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHH--HHHHHTTC-CHHHHHHHHHHHHHHHHHTTC----------
T ss_pred eEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHH--HHHHHhcC-CHHHHHHHHHHHHHHHHhcCC----------
Confidence 89999999999999999987642211111111233344 4444 5 678888899888776653211
Q ss_pred CCCccccccCHHHHHHHHHhcC
Q psy7673 221 IDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 221 ~~~~~~~~i~~~d~~~al~~~~ 242 (541)
..|+.+++.+|++...
T Consensus 258 ------~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 258 ------TKVKEEYVYMAKEEIE 273 (386)
T ss_dssp ------SSCCHHHHHHHHHHHH
T ss_pred ------CccCHHHHHHHHHHHh
Confidence 2499999999988763
No 75
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.58 E-value=3.4e-14 Score=155.17 Aligned_cols=210 Identities=17% Similarity=0.243 Sum_probs=144.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCcccc--ccccCchHHHHHHHHHHHHhcCCceE
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELL--NMYLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
......++||+||||||||++++++++.+ +..++.+++..+. ..+.+..+..++.++..+....+++|
T Consensus 203 ~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL 282 (758)
T 1r6b_X 203 CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSIL 282 (758)
T ss_dssp TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEE
T ss_pred hccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEE
Confidence 45678899999999999999999999987 6678888888776 35678888999999999888778999
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCCHH
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPNEQ 153 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~ 153 (541)
||||+|.+.+..... ....... ..+..+.....+.+|++|+.++ .+++++.+ ||. .+.|+.|+.+
T Consensus 283 ~IDEi~~l~~~~~~~---~~~~~~~----~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~ 352 (758)
T 1r6b_X 283 FIDEIHTIIGAGAAS---GGQVDAA----NLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIE 352 (758)
T ss_dssp EETTTTTTTTSCCSS---SCHHHHH----HHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHH
T ss_pred EEechHHHhhcCCCC---cchHHHH----HHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHH
Confidence 999999998764331 1122222 3333334456788899888542 57788998 997 7999999999
Q ss_pred HHHHHHHHHHhcCCC--CCCCCCCCHHHHH---hhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccc
Q psy7673 154 DRKEILLALTKQGKD--PMMGEDVDFDKIA---ADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVT 228 (541)
Q Consensus 154 ~r~~il~~~~~~~~~--~~~~~~~~~~~l~---~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (541)
++.+|++.++..+.. .....+..+..++ .......+.+..+..++++|...+... .. ......
T Consensus 353 e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~--~~----------~~~~~~ 420 (758)
T 1r6b_X 353 ETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM--PV----------SKRKKT 420 (758)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHS--SS----------CCCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcc--cc----------cccCCc
Confidence 999999988764210 0001111122232 111234567788889998886544321 10 011245
Q ss_pred cCHHHHHHHHHhcC
Q psy7673 229 IGFRHFDIALKRIK 242 (541)
Q Consensus 229 i~~~d~~~al~~~~ 242 (541)
++.+|+.++++...
T Consensus 421 v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 421 VNVADIESVVARIA 434 (758)
T ss_dssp CCHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHhc
Confidence 89999999998764
No 76
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=3.3e-14 Score=143.02 Aligned_cols=201 Identities=15% Similarity=0.127 Sum_probs=137.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCccccccc----------------cC-chHHHHHHHHHHHHh-cC
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA----GINFISVKGPELLNMY----------------LG-ESERAVRQCFQRARN-SQ 74 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~~l~~~~----------------~~-~~~~~~~~~~~~~~~-~~ 74 (541)
+++|+||+|||||++++.+++.+ +..+++++|....... .+ ........+...... ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 89999999999999999999998 6789999987643210 01 112222233322222 34
Q ss_pred CceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCC--CCCeEEEEecCCC---CCCCccccCCCCCCe-EEEec
Q psy7673 75 PCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEG--RGGVFLMAATNRP---DIIDPAVMRPGRFDR-ILFVN 148 (541)
Q Consensus 75 ~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vi~t~~~~---~~l~~~l~~~~r~~~-~i~~~ 148 (541)
|.+|+|||+|.+. ...+..|+..++.... ..++.||+++|.+ +.+++.+.+ ||.. .+.|+
T Consensus 126 ~~vlilDE~~~l~------------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~ 191 (389)
T 1fnn_A 126 YMFLVLDDAFNLA------------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFS 191 (389)
T ss_dssp CEEEEEETGGGSC------------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECC
T ss_pred eEEEEEECccccc------------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeC
Confidence 7899999999981 2456677777665432 1468888988877 567888877 7764 79999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhc---------CCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcC
Q psy7673 149 LPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERC---------EGFSGADLEQLVKEAREQAILEIVNSVENDDQA 219 (541)
Q Consensus 149 ~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~ 219 (541)
+++.++..++++..+.........++..+..++ ..+ .| .++.+.++++.+...+..+..
T Consensus 192 pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~--------- 259 (389)
T 1fnn_A 192 PYTKDQIFDILLDRAKAGLAEGSYSEDILQMIA--DITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGR--------- 259 (389)
T ss_dssp CCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHH--HHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTC---------
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH--HHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCC---------
Confidence 999999999999988742111111222244444 556 45 578899999998877754322
Q ss_pred CCCCccccccCHHHHHHHHHhcCCCCChhhh
Q psy7673 220 GIDDTEQVTIGFRHFDIALKRIKPSVSKADC 250 (541)
Q Consensus 220 ~~~~~~~~~i~~~d~~~al~~~~~~~s~~~~ 250 (541)
..|+.+++.+++.........+.+
T Consensus 260 -------~~i~~~~v~~~~~~~~~~~~~~~l 283 (389)
T 1fnn_A 260 -------KHIAPEDVRKSSKEVLFGISEEVL 283 (389)
T ss_dssp -------SSCCHHHHHHHHHHHSCCCCHHHH
T ss_pred -------CCcCHHHHHHHHHHHhhhhHHHHH
Confidence 248999999999887665444333
No 77
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.58 E-value=7.1e-14 Score=137.29 Aligned_cols=193 Identities=16% Similarity=0.175 Sum_probs=127.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcc------ccccccCchHHHHHHHHHHHHhcC---CceEEEcCCcc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPE------LLNMYLGESERAVRQCFQRARNSQ---PCVIFFDEIDA 85 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~------l~~~~~~~~~~~~~~~~~~~~~~~---~~il~iDe~d~ 85 (541)
+.++||+||||||||++++++++.++.+++.++|.. +.+........ ..+. .... .++|||||+|.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~ 120 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHK---GNFE--VKKGPVFSNFILADEVNR 120 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTT---TEEE--EEECTTCSSEEEEETGGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCC---CceE--eccCcccccEEEEEcccc
Confidence 458999999999999999999999999999999842 22111100000 0000 0111 26999999998
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHhcCC---------CCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCC
Q psy7673 86 LCPKRSSLGDNNSSMRIVNQLLTEMDGF---------EGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPN 151 (541)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~l~~~---------~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~ 151 (541)
+.+ ..++.|+..++.. ..+.+++||+|+|..+ .+++++++ ||...+.++.|+
T Consensus 121 ~~~------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~ 186 (331)
T 2r44_A 121 SPA------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLD 186 (331)
T ss_dssp SCH------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCC
T ss_pred CCH------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCC
Confidence 742 3445666665532 1234578888888543 38999999 998889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCC-----------------CC---HHHHHh---hh--------------hcCCCCHHHH
Q psy7673 152 EQDRKEILLALTKQGKDPMMGED-----------------VD---FDKIAA---DE--------------RCEGFSGADL 194 (541)
Q Consensus 152 ~~~r~~il~~~~~~~~~~~~~~~-----------------~~---~~~l~~---~~--------------~~~g~~~~dl 194 (541)
.+++.+|++..+........... ++ .+.++. .. ...|.++|.+
T Consensus 187 ~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~ 266 (331)
T 2r44_A 187 KESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAA 266 (331)
T ss_dssp HHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHH
T ss_pred HHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHH
Confidence 99999999998875321111000 11 222210 00 1125689999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 195 EQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 195 ~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
..+++.|...|..+... .|+.+|+.+++..+-
T Consensus 267 ~~ll~~a~a~A~l~g~~----------------~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 267 INLNRVAKAMAFFNNRD----------------YVLPEDIKEVAYDIL 298 (331)
T ss_dssp HHHHHHHHHHHHHTTCS----------------BCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC----------------CCCHHHHHHHHHHHh
Confidence 99999888877654332 389999999998763
No 78
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.57 E-value=3.1e-15 Score=134.72 Aligned_cols=138 Identities=26% Similarity=0.420 Sum_probs=98.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCccccc--cccCchHHHHHHHHHHHHh-cCCce
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELLN--MYLGESERAVRQCFQRARN-SQPCV 77 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~-~~~~i 77 (541)
....+.+++|+||+|||||++++++++.+ +.+++.++|..+.. .+.+.....+..++..+.. ..+.+
T Consensus 39 ~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 118 (195)
T 1jbk_A 39 QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVI 118 (195)
T ss_dssp TSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEE
T ss_pred hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeE
Confidence 34567889999999999999999999987 68899999887753 3345555667777776644 44679
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCCH
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPNE 152 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~ 152 (541)
|+|||+|.+.+........ .. .+.+...++ ..++.+|++++.+. .+++.+++ ||. .+.++.|+.
T Consensus 119 l~iDe~~~l~~~~~~~~~~-~~---~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~ 187 (195)
T 1jbk_A 119 LFIDELHTMVGAGKADGAM-DA---GNMLKPALA----RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSV 187 (195)
T ss_dssp EEEETGGGGTT------CC-CC---HHHHHHHHH----TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCH
T ss_pred EEEeCHHHHhccCcccchH-HH---HHHHHHhhc----cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCH
Confidence 9999999997654221111 11 223333333 34577888888665 68999998 997 699999999
Q ss_pred HHHHHHH
Q psy7673 153 QDRKEIL 159 (541)
Q Consensus 153 ~~r~~il 159 (541)
+++.+|+
T Consensus 188 ~~~~~il 194 (195)
T 1jbk_A 188 EDTIAIL 194 (195)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 9998876
No 79
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.57 E-value=5.6e-15 Score=143.95 Aligned_cols=181 Identities=22% Similarity=0.299 Sum_probs=122.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc-----cCch----HHH-HHHHHHHHHhcCCceEEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY-----LGES----ERA-VRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~-----~~~~----~~~-~~~~~~~~~~~~~~il~i 80 (541)
+..++||+||||||||++++++++.+ +.+++.++|..+.... ++.. ... ...+.........++|||
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~l 125 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILF 125 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEE
Confidence 34579999999999999999999988 5679999998764321 1100 000 012223333444589999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCC------------------------
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNR------------------------ 127 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~------------------------ 127 (541)
||+|.+.+ ..++.|+..++... ...++++|+|||.
T Consensus 126 DEi~~l~~------------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~ 193 (311)
T 4fcw_A 126 DAIEKAHP------------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFK 193 (311)
T ss_dssp ETGGGSCH------------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHH
T ss_pred eChhhcCH------------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHH
Confidence 99999842 45567777766421 1135779999998
Q ss_pred --CCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC-------CCCCCCCCHHHHHhhhhcC--CCCHHHHHH
Q psy7673 128 --PDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD-------PMMGEDVDFDKIAADERCE--GFSGADLEQ 196 (541)
Q Consensus 128 --~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~--g~~~~dl~~ 196 (541)
...+++++.+ ||+..+.+.+|+.+++..|++.++..... ....++..+..++ .... ..+.|+|++
T Consensus 194 ~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~gn~R~L~~ 269 (311)
T 4fcw_A 194 VLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLA--ERGYDPVFGARPLRR 269 (311)
T ss_dssp HHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHH--HHSCBTTTBTTTHHH
T ss_pred HHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHH--HhCCCccCCchhHHH
Confidence 3467888887 99999999999999999999997765210 0011111233333 3333 457899999
Q ss_pred HHHHHHHHHHHHHh
Q psy7673 197 LVKEAREQAILEIV 210 (541)
Q Consensus 197 l~~~a~~~a~~~~~ 210 (541)
+++++...+..+..
T Consensus 270 ~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 270 VIQRELETPLAQKI 283 (311)
T ss_dssp HHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888776654
No 80
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.57 E-value=2.3e-13 Score=133.47 Aligned_cols=187 Identities=25% Similarity=0.338 Sum_probs=130.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSS 92 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~ 92 (541)
.++.+++|+||||+||||++++++..++.++...++..+.. ...+..++.. .....|++|||+|.+.+.
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~~--- 117 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS--LERGDVLFIDEIHRLNKA--- 117 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH--CCTTCEEEEETGGGCCHH---
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH--ccCCCEEEEcchhhcCHH---
Confidence 34577999999999999999999999998877766543321 1122222222 224579999999998531
Q ss_pred CCCCChhHHHHHHHHHHhcCCC----------------CCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHH
Q psy7673 93 LGDNNSSMRIVNQLLTEMDGFE----------------GRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK 156 (541)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~~----------------~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 156 (541)
..+.|+..++... .-..+.++++++.+..+++.+++ ||...+.+++|+.+++.
T Consensus 118 ---------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~ 186 (334)
T 1in4_A 118 ---------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELK 186 (334)
T ss_dssp ---------HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHH
T ss_pred ---------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHH
Confidence 1223333332211 01236778888989999999999 99888999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHH
Q psy7673 157 EILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236 (541)
Q Consensus 157 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 236 (541)
+|++..+...... . ++.....++ ..+.| ++|++.++++++...|..+.. ..|+.+++.+
T Consensus 187 ~iL~~~~~~~~~~-~-~~~~~~~ia--~~~~G-~~R~a~~ll~~~~~~a~~~~~----------------~~It~~~v~~ 245 (334)
T 1in4_A 187 EIIKRAASLMDVE-I-EDAAAEMIA--KRSRG-TPRIAIRLTKRVRDMLTVVKA----------------DRINTDIVLK 245 (334)
T ss_dssp HHHHHHHHHTTCC-B-CHHHHHHHH--HTSTT-CHHHHHHHHHHHHHHHHHHTC----------------SSBCHHHHHH
T ss_pred HHHHHHHHHcCCC-c-CHHHHHHHH--HhcCC-ChHHHHHHHHHHHHHHHHcCC----------------CCcCHHHHHH
Confidence 9999988764321 1 122244555 66677 689999999998777764422 2499999999
Q ss_pred HHHhcC
Q psy7673 237 ALKRIK 242 (541)
Q Consensus 237 al~~~~ 242 (541)
+++...
T Consensus 246 al~~~~ 251 (334)
T 1in4_A 246 TMEVLN 251 (334)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 998764
No 81
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.57 E-value=1.3e-14 Score=158.31 Aligned_cols=176 Identities=20% Similarity=0.264 Sum_probs=124.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCC
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSL 93 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~ 93 (541)
++||+||||||||++++++++.+ +.+++.++|+++....... ...+........++||||||+|.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~------ 592 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH------ 592 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC------
Confidence 79999999999999999999998 6889999999987765444 1122333444566899999999873
Q ss_pred CCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCCC------------CCccccCCCCCCeEEEecCCCH
Q psy7673 94 GDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRPDI------------IDPAVMRPGRFDRILFVNLPNE 152 (541)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~~~------------l~~~l~~~~r~~~~i~~~~p~~ 152 (541)
..+++.|++.++... ...+++||+|||.+.. +.+++++ ||+..|.|++|+.
T Consensus 593 ------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~ 664 (758)
T 3pxi_A 593 ------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEK 664 (758)
T ss_dssp ------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CH
T ss_pred ------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCH
Confidence 346677777777522 2346799999996543 7888888 9999999999999
Q ss_pred HHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy7673 153 QDRKEILLALTKQGK-------DPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIV 210 (541)
Q Consensus 153 ~~r~~il~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~ 210 (541)
+++..|++.++.... .....++...+.++.......+..|+|+++++++...+..+..
T Consensus 665 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 665 KHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999998876521 0001111123444422234556789999999998887776544
No 82
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.55 E-value=6e-15 Score=151.14 Aligned_cols=171 Identities=23% Similarity=0.338 Sum_probs=114.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEE
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
..+...++||+||||||||++++++++.+ +.+++.++|. ..+.+..+..++.+|..+....+.||||
T Consensus 197 ~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfi 273 (468)
T 3pxg_A 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFI 273 (468)
T ss_dssp HCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEE
T ss_pred hccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEE
Confidence 34667799999999999999999999997 7789999987 5556676777888999988888899999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCCHHHH
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPNEQDR 155 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~r 155 (541)
| .. ....+.|+..++ ...+.+|++||..+ .+++++++ ||. .|.|+.|+.+++
T Consensus 274 D------~~----------~~a~~~L~~~L~----~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~ 330 (468)
T 3pxg_A 274 D------AA----------IDASNILKPSLA----RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDES 330 (468)
T ss_dssp C------C------------------CCCTT----SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHH
T ss_pred e------Cc----------hhHHHHHHHhhc----CCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHH
Confidence 9 11 011223333333 55789999999887 68999999 997 699999999999
Q ss_pred HHHHHHHHhcCCCC--CCCCCCCHHHHH---hhhhcCCCCHHHHHHHHHHHHHHHHH
Q psy7673 156 KEILLALTKQGKDP--MMGEDVDFDKIA---ADERCEGFSGADLEQLVKEAREQAIL 207 (541)
Q Consensus 156 ~~il~~~~~~~~~~--~~~~~~~~~~l~---~~~~~~g~~~~dl~~l~~~a~~~a~~ 207 (541)
..|++.++..+... ....+..+..++ .......+.++....+++.|...+..
T Consensus 331 ~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~ 387 (468)
T 3pxg_A 331 IQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRL 387 (468)
T ss_dssp HHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHh
Confidence 99999987763211 111111122222 00123445677899999988765544
No 83
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=4.5e-14 Score=146.74 Aligned_cols=188 Identities=20% Similarity=0.236 Sum_probs=114.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHH-------HHHHHHHHH-----HhcCCceEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESER-------AVRQCFQRA-----RNSQPCVIFF 80 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~-------~~~~~~~~~-----~~~~~~il~i 80 (541)
++++++||+||||||||+++++++++++.++++++|+++.......... .+...|..+ ....+.||+|
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliI 154 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIM 154 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEE
Confidence 4678999999999999999999999999999999998765432100000 011122222 1245689999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHH
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILL 160 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~ 160 (541)
||+|.+....+. .+..|...++. ....+++++++.....++ .+. |+...+.|++|+.+++.++++
T Consensus 155 DEid~l~~~~~~---------~l~~L~~~l~~--~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~ 219 (516)
T 1sxj_A 155 DEVDGMSGGDRG---------GVGQLAQFCRK--TSTPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLM 219 (516)
T ss_dssp CSGGGCCTTSTT---------HHHHHHHHHHH--CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHH
T ss_pred ECCCccchhhHH---------HHHHHHHHHHh--cCCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHH
Confidence 999999754221 23445555442 122344444333333443 344 345689999999999999999
Q ss_pred HHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHh
Q psy7673 161 ALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKR 240 (541)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 240 (541)
..+...+.. +. +..+..++ +.+.| ..+.+.++++.+ +. .. ..|+.+++.+++..
T Consensus 220 ~i~~~~~~~-i~-~~~l~~la--~~s~G-diR~~i~~L~~~---~~--~~----------------~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 220 TIAIREKFK-LD-PNVIDRLI--QTTRG-DIRQVINLLSTI---ST--TT----------------KTINHENINEISKA 273 (516)
T ss_dssp HHHHHHTCC-CC-TTHHHHHH--HHTTT-CHHHHHHHHTHH---HH--HS----------------SCCCTTHHHHHHHH
T ss_pred HHHHHcCCC-CC-HHHHHHHH--HHcCC-cHHHHHHHHHHH---Hh--cC----------------CCCchHHHHHHHHh
Confidence 888754322 22 22356666 55554 344444444433 21 11 24777888777764
Q ss_pred c
Q psy7673 241 I 241 (541)
Q Consensus 241 ~ 241 (541)
.
T Consensus 274 ~ 274 (516)
T 1sxj_A 274 W 274 (516)
T ss_dssp H
T ss_pred h
Confidence 4
No 84
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.54 E-value=5.4e-14 Score=131.65 Aligned_cols=179 Identities=18% Similarity=0.222 Sum_probs=122.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQCFQ 68 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~~~ 68 (541)
..+..++|+||+|+|||++++.+++.+... ++.+++.. ......+..++.
T Consensus 43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 116 (250)
T 1njg_A 43 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLD 116 (250)
T ss_dssp CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHH
Confidence 345689999999999999999999887431 22222211 112233444444
Q ss_pred HHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeE
Q psy7673 69 RAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRI 144 (541)
Q Consensus 69 ~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~ 144 (541)
.+. ...+.+|+|||+|.+. ...++.|+..++.. ..++.+|++++.+..+++.+.+ |+ ..
T Consensus 117 ~~~~~~~~~~~~vlviDe~~~l~------------~~~~~~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~ 179 (250)
T 1njg_A 117 NVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQ 179 (250)
T ss_dssp SCCCSCSSSSSEEEEEETGGGSC------------HHHHHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EE
T ss_pred HhhhchhcCCceEEEEECccccc------------HHHHHHHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hh
Confidence 432 2346899999999973 23456677777643 3467888889888888888887 75 68
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCc
Q psy7673 145 LFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDT 224 (541)
Q Consensus 145 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~ 224 (541)
+.+++++.++..++++..+...... .++.....++ +.+.| .++.+.++++.+...+.
T Consensus 180 i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~--~~~~G-~~~~~~~~~~~~~~~~~------------------ 236 (250)
T 1njg_A 180 FHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLA--RAAEG-SLRDALSLTDQAIASGD------------------ 236 (250)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHH--HHHTT-CHHHHHHHHHHHHTTTT------------------
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHH--HHcCC-CHHHHHHHHHHHHhccC------------------
Confidence 9999999999999999998764311 1222244555 67777 78999999887732210
Q ss_pred cccccCHHHHHHHHH
Q psy7673 225 EQVTIGFRHFDIALK 239 (541)
Q Consensus 225 ~~~~i~~~d~~~al~ 239 (541)
..|+.+++++++.
T Consensus 237 --~~i~~~~v~~~~~ 249 (250)
T 1njg_A 237 --GQVSTQAVSAMLG 249 (250)
T ss_dssp --SSBCHHHHHHHSC
T ss_pred --ceecHHHHHHHhC
Confidence 1499999998863
No 85
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.53 E-value=3.4e-14 Score=139.15 Aligned_cols=130 Identities=22% Similarity=0.313 Sum_probs=97.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhc-----CCceEEEcCCcc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNS-----QPCVIFFDEIDA 85 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~il~iDe~d~ 85 (541)
....+..+|++||||||||+++++++++++.+++++++++.. ...++..+...... .+.+|+|||+|.
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~ 116 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDR 116 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCC
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcc
Confidence 345667788899999999999999999999999999987642 23334433333222 468999999999
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHH
Q psy7673 86 LCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~ 163 (541)
+.+ ....+.|+..++... .++.+|+++|.+..+++.+++ ||. .+.|++|+.+++.+|++.++
T Consensus 117 l~~-----------~~~~~~L~~~le~~~--~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 117 SGL-----------AESQRHLRSFMEAYS--SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp GGG-----------HHHHHHHHHHHHHHG--GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred cCc-----------HHHHHHHHHHHHhCC--CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 841 234456666666432 346888999999999999998 884 79999999999776655543
No 86
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.52 E-value=2.4e-14 Score=156.38 Aligned_cols=182 Identities=16% Similarity=0.234 Sum_probs=126.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccccc-----ccC----chH-HHHHHHHHHHHhcCCceEEEcCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM-----YLG----ESE-RAVRQCFQRARNSQPCVIFFDEI 83 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~-----~~~----~~~-~~~~~~~~~~~~~~~~il~iDe~ 83 (541)
+..++||+||||||||++++++++.++.+++.++|+++... .+| ... ..-..+........++||||||+
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi 566 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETG
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCc
Confidence 34479999999999999999999999999999999887542 111 111 11112334444556789999999
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCCC-------------------------
Q psy7673 84 DALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRPD------------------------- 129 (541)
Q Consensus 84 d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~~------------------------- 129 (541)
|.+. ..+++.|++.++... ...+++||+|||...
T Consensus 567 ~~~~------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 634 (758)
T 1r6b_X 567 EKAH------------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKK 634 (758)
T ss_dssp GGSC------------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHH
T ss_pred cccC------------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHH
Confidence 9874 346778888877421 124578999999743
Q ss_pred CCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC-------CCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 130 IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD-------PMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 130 ~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
.++++|++ ||+..|.|++|+.+++..|++.++..... ....++..+..++.......+++|++.++++++.
T Consensus 635 ~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 635 IFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_dssp HSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred hcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence 56788888 99989999999999999999998863210 0001111234444222344667899999999998
Q ss_pred HHHHHHH
Q psy7673 203 EQAILEI 209 (541)
Q Consensus 203 ~~a~~~~ 209 (541)
..++.+.
T Consensus 713 ~~~l~~~ 719 (758)
T 1r6b_X 713 KKPLANE 719 (758)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 8766553
No 87
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.52 E-value=2.8e-14 Score=157.28 Aligned_cols=186 Identities=25% Similarity=0.340 Sum_probs=118.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCcccc--ccccCchHHHHHHHHHHHHhc-CCce
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELL--NMYLGESERAVRQCFQRARNS-QPCV 77 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~~-~~~i 77 (541)
..+...+++|+||||||||++++.+++.+ +.+++.+++..+. ..+.++....+..++..+... .+.|
T Consensus 187 ~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~i 266 (854)
T 1qvr_A 187 LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVI 266 (854)
T ss_dssp HCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEE
T ss_pred hcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeE
Confidence 34567789999999999999999999988 7899999999886 456788888899999988765 6789
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----CCCccccCCCCCCeEEEecCCCHH
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD----IIDPAVMRPGRFDRILFVNLPNEQ 153 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~----~l~~~l~~~~r~~~~i~~~~p~~~ 153 (541)
|||||+|.+.+.....+ .....+.|...++ ...+.+|++|+.++ .+++++.+ ||.. +.++.|+.+
T Consensus 267 L~IDEi~~l~~~~~~~g----~~~~~~~L~~~l~----~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~ 335 (854)
T 1qvr_A 267 LFIDELHTVVGAGKAEG----AVDAGNMLKPALA----RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVE 335 (854)
T ss_dssp EEECCC-----------------------HHHHH----TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHH
T ss_pred EEEecHHHHhccCCccc----hHHHHHHHHHHHh----CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHH
Confidence 99999999986643311 1223334444444 34578888888654 47899999 9985 999999999
Q ss_pred HHHHHHHHHHhcCCC--CCCCCCCCHHHHH---hhhhcCCCCHHHHHHHHHHHHHHHHH
Q psy7673 154 DRKEILLALTKQGKD--PMMGEDVDFDKIA---ADERCEGFSGADLEQLVKEAREQAIL 207 (541)
Q Consensus 154 ~r~~il~~~~~~~~~--~~~~~~~~~~~l~---~~~~~~g~~~~dl~~l~~~a~~~a~~ 207 (541)
++.+|++.++..+.. .....+..+..++ ....+..|.+.....+++.|...+..
T Consensus 336 e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~ 394 (854)
T 1qvr_A 336 ETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRM 394 (854)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHh
Confidence 999999987764310 0001111122222 11135577888999999888766653
No 88
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.51 E-value=5.2e-14 Score=139.48 Aligned_cols=196 Identities=22% Similarity=0.222 Sum_probs=117.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE----EeCcccccc---------------------ccCchHHHH------
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFIS----VKGPELLNM---------------------YLGESERAV------ 63 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~----i~~~~l~~~---------------------~~~~~~~~~------ 63 (541)
..++||+||||||||++++++++.++..... ++|...... ..+.....+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 124 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDI 124 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECH
T ss_pred CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechh
Confidence 4469999999999999999999988631100 122211100 001111110
Q ss_pred HHHHHHH---------HhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCC----C-------CCCCeEEEE
Q psy7673 64 RQCFQRA---------RNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF----E-------GRGGVFLMA 123 (541)
Q Consensus 64 ~~~~~~~---------~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~-------~~~~~~vi~ 123 (541)
...+... ....+++|||||+|.+.. ..++.|+..++.- . ...++++|+
T Consensus 125 ~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~ 192 (350)
T 1g8p_A 125 ERAISKGEKAFEPGLLARANRGYLYIDECNLLED------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVG 192 (350)
T ss_dssp HHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEE
T ss_pred hhhhcCCceeecCceeeecCCCEEEEeChhhCCH------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEE
Confidence 1111111 112357999999999843 2445666655531 1 113689999
Q ss_pred ecCCCC-CCCccccCCCCCCeEEEecCC-CHHHHHHHHHHHHhc----------------------------CCCCCCCC
Q psy7673 124 ATNRPD-IIDPAVMRPGRFDRILFVNLP-NEQDRKEILLALTKQ----------------------------GKDPMMGE 173 (541)
Q Consensus 124 t~~~~~-~l~~~l~~~~r~~~~i~~~~p-~~~~r~~il~~~~~~----------------------------~~~~~~~~ 173 (541)
++|..+ .+++++++ ||...+.++.| +.+++.+|++..+.. .....+.
T Consensus 193 ~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls- 269 (350)
T 1g8p_A 193 SGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP- 269 (350)
T ss_dssp EECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-
T ss_pred EeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-
Confidence 999744 79999999 99988999999 677787888763211 0000111
Q ss_pred CCCHHHHHhhhhcCCC-CHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 174 DVDFDKIAADERCEGF-SGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 174 ~~~~~~l~~~~~~~g~-~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
+..+..++......+. +.|.+.++++.|...|..+.. ..|+.+|+.+|+..+
T Consensus 270 ~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~----------------~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 270 NTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA----------------TAVGRDHLKRVATMA 322 (350)
T ss_dssp HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC----------------SBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC----------------CcCCHHHHHHHHHHH
Confidence 1112333311112223 679999999988887764432 249999999998865
No 89
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.48 E-value=8.9e-14 Score=151.61 Aligned_cols=171 Identities=22% Similarity=0.339 Sum_probs=117.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEE
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFF 80 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~i 80 (541)
..+...++||+||||||||++++++|+.+ +.+++.+++ ...+.|+.+..++.+|..+....++||||
T Consensus 197 ~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfi 273 (758)
T 3pxi_A 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFI 273 (758)
T ss_dssp HCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEE
T ss_pred hCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEE
Confidence 44677789999999999999999999997 788888887 44567777888999999998888999999
Q ss_pred cCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCCHHHH
Q psy7673 81 DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPNEQDR 155 (541)
Q Consensus 81 De~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~r 155 (541)
| .. ....+.|+..++ ...+.+|++||..+ .+++++++ || ..|.|+.|+.+++
T Consensus 274 D------~~----------~~~~~~L~~~l~----~~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~ 330 (758)
T 3pxi_A 274 D------AA----------IDASNILKPSLA----RGELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDES 330 (758)
T ss_dssp C------C------------------CCCTT----SSSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHH
T ss_pred c------Cc----------hhHHHHHHHHHh----cCCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHH
Confidence 9 00 012233333333 55689999999887 69999999 99 5799999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCC---HHHHH---hhhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy7673 156 KEILLALTKQGKDPMMGEDVD---FDKIA---ADERCEGFSGADLEQLVKEAREQAILE 208 (541)
Q Consensus 156 ~~il~~~~~~~~~~~~~~~~~---~~~l~---~~~~~~g~~~~dl~~l~~~a~~~a~~~ 208 (541)
.+|++.++..+.... ...+. +..++ ....+.++.+++...+++.|...+..+
T Consensus 331 ~~il~~~~~~~~~~~-~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 331 IQILQGLRDRYEAHH-RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHTTTTSGGGS-SCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 999998877632111 11122 22222 112345778889999999987766544
No 90
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=3.5e-13 Score=133.64 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=123.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC------CcEEEEeCccccccccCchHHHHHHHHHHHH----------------hc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAG------INFISVKGPELLNMYLGESERAVRQCFQRAR----------------NS 73 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~------~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~----------------~~ 73 (541)
.++||+||||||||++++++++.++ ..++.+++++..+. ..+...+.... ..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI------SIVREKVKNFARLTVSKPSKHDLENYPCP 132 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch------HHHHHHHHHHhhhcccccchhhcccCCCC
Confidence 4499999999999999999998863 56888888764221 11111111111 12
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHH
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQ 153 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~ 153 (541)
.+.||+|||+|.+.+. ..+.|+..++... .+..+|.++|.+..+.+.+++ |+. .+.|++|+.+
T Consensus 133 ~~~vliiDE~~~l~~~------------~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~ 195 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD------------AQSALRRTMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDAS 195 (353)
T ss_dssp SCEEEEETTGGGSCHH------------HHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHH
T ss_pred CceEEEEECCCccCHH------------HHHHHHHHHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHH
Confidence 3469999999998532 3456777776533 345677788888889999998 885 8999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHH
Q psy7673 154 DRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRH 233 (541)
Q Consensus 154 ~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d 233 (541)
+...+++..+...+.. . ++..+..++ ..+.| ..+.+.++++.+...+..+. ....|+.+|
T Consensus 196 ~~~~~l~~~~~~~~~~-i-~~~~l~~l~--~~~~G-~~r~~~~~l~~~~~~~~~~~---------------~~~~It~~~ 255 (353)
T 1sxj_D 196 NAIDRLRFISEQENVK-C-DDGVLERIL--DISAG-DLRRGITLLQSASKGAQYLG---------------DGKNITSTQ 255 (353)
T ss_dssp HHHHHHHHHHHTTTCC-C-CHHHHHHHH--HHTSS-CHHHHHHHHHHTHHHHHHHC---------------SCCCCCHHH
T ss_pred HHHHHHHHHHHHhCCC-C-CHHHHHHHH--HHcCC-CHHHHHHHHHHHHHhcCCCc---------------cCccccHHH
Confidence 9999999998764321 1 222345555 55666 57777777777655432110 001489999
Q ss_pred HHHHHHhc
Q psy7673 234 FDIALKRI 241 (541)
Q Consensus 234 ~~~al~~~ 241 (541)
+.+++...
T Consensus 256 v~~~~~~~ 263 (353)
T 1sxj_D 256 VEELAGVV 263 (353)
T ss_dssp HHHHHTCC
T ss_pred HHHHhCCC
Confidence 99887743
No 91
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.48 E-value=6.5e-14 Score=125.26 Aligned_cols=130 Identities=25% Similarity=0.412 Sum_probs=93.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeCccccc--cccCchHHHHHHHHHHHHhc-CCceE
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA----------GINFISVKGPELLN--MYLGESERAVRQCFQRARNS-QPCVI 78 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~----------~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~~-~~~il 78 (541)
...+.+++|+||+|||||++++++++.+ +.+++.+++..+.. .+.+.....+..++..+... .+.+|
T Consensus 40 ~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 119 (187)
T 2p65_A 40 RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVM 119 (187)
T ss_dssp SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEE
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEE
Confidence 3557789999999999999999999987 77888898877653 23445555677777776654 56899
Q ss_pred EEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCccccCCCCCCeEEEecCCC
Q psy7673 79 FFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPN 151 (541)
Q Consensus 79 ~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~i~~~~p~ 151 (541)
+|||+|.+.+.+....... ...+.|...++ ..++++|++++.+. .+++.+++ ||. .+.++.|+
T Consensus 120 ~iDe~~~l~~~~~~~~~~~---~~~~~l~~~~~----~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 120 FIDEIHTVVGAGAVAEGAL---DAGNILKPMLA----RGELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EETTGGGGSSSSSSCTTSC---CTHHHHHHHHH----TTCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEeCHHHhcccccccccch---HHHHHHHHHHh----cCCeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 9999999975543111111 12233333333 34578888888654 68999998 998 58888885
No 92
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=1.1e-12 Score=128.21 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=121.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHHHHHHHHHHHH-------hcCCceEEEcCCc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRAR-------NSQPCVIFFDEID 84 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~il~iDe~d 84 (541)
+++|+||+|+|||++++.+++.+ +..++++++.+..+ ...++..+.... ...+.+|+|||+|
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~ 117 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEAD 117 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcc
Confidence 39999999999999999999986 45688888875321 233444444433 2236899999999
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHh
Q psy7673 85 ALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTK 164 (541)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~ 164 (541)
.+.. ...+.|+..++.. ..+..+|.+++.+..+.+.+++ |+. .+.|++|+.++..++++..+.
T Consensus 118 ~l~~------------~~~~~L~~~le~~--~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 118 SMTA------------GAQQALRRTMELY--SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp GSCH------------HHHHTTHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred cCCH------------HHHHHHHHHHhcc--CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHH
Confidence 9843 2344566666642 3456788888888889999998 875 899999999999999999887
Q ss_pred cCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhc
Q psy7673 165 QGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRI 241 (541)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 241 (541)
..+.. . ++.....++ ..+.| .++.+.++++.+.... ..|+.+++.+++...
T Consensus 181 ~~~~~-~-~~~~~~~l~--~~~~G-~~r~a~~~l~~~~~~~---------------------~~i~~~~v~~~~~~~ 231 (323)
T 1sxj_B 181 LEDVK-Y-TNDGLEAII--FTAEG-DMRQAINNLQSTVAGH---------------------GLVNADNVFKIVDSP 231 (323)
T ss_dssp HHTCC-B-CHHHHHHHH--HHHTT-CHHHHHHHHHHHHHHH---------------------SSBCHHHHHHHHTSC
T ss_pred HcCCC-C-CHHHHHHHH--HHcCC-CHHHHHHHHHHHHhcC---------------------CCcCHHHHHHHHCCC
Confidence 53311 1 122234455 55655 5777777776654211 137888888877643
No 93
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.44 E-value=3.6e-13 Score=131.53 Aligned_cols=162 Identities=20% Similarity=0.246 Sum_probs=109.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCccccccccCchHHHHHHHHHHH--HhcCCceEEEcCCccccC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNMYLGESERAVRQCFQRA--RNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~il~iDe~d~l~~ 88 (541)
.++||+||+|||||++++++++.+ +.+++.+++++..+. ......+....... ....+.+|+|||+|.+..
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH
Confidence 349999999999999999999986 446888998765331 11112222221110 013468999999999842
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD 168 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~ 168 (541)
...+.|+..++.. ..++++|+++|.+..+.+.+++ |+. .+.|++|+.+++.++++..+...+.
T Consensus 117 ------------~~~~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~ 179 (319)
T 2chq_A 117 ------------DAQAALRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGV 179 (319)
T ss_dssp ------------HHHHTTGGGTSSS--SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCC
T ss_pred ------------HHHHHHHHHHHhc--CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCC
Confidence 2345566666542 3457888889988899999998 885 8999999999999999999986532
Q ss_pred CCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHH
Q psy7673 169 PMMGEDVDFDKIAADERCEGFSGADLEQLVKEA 201 (541)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a 201 (541)
. .++..+..++ ..+.| ..+.+.++++.+
T Consensus 180 ~--i~~~~l~~l~--~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 180 K--ITEDGLEALI--YISGG-DFRKAINALQGA 207 (319)
T ss_dssp C--BCHHHHHHHH--HTTTT-CHHHHHHHHHHH
T ss_pred C--CCHHHHHHHH--HHcCC-CHHHHHHHHHHH
Confidence 1 1112234444 44444 556666665554
No 94
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.43 E-value=6.9e-13 Score=132.56 Aligned_cols=162 Identities=19% Similarity=0.250 Sum_probs=112.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQCFQ 68 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~~~ 68 (541)
+.+..+||+||+|+|||++++++++.++.. ++.++.... .....++.++.
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~ 109 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLD 109 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEeccccc------CCHHHHHHHHH
Confidence 445679999999999999999999988532 233333210 01112344444
Q ss_pred HHH----hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeE
Q psy7673 69 RAR----NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRI 144 (541)
Q Consensus 69 ~~~----~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~ 144 (541)
.+. ...+.||+|||+|.+.. ...+.|+..++.. ..++++|++++.+..+.+.+++ |+ ..
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~ 172 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQ 172 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCH------------HHHHHHHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EE
T ss_pred HHhhccccCCeEEEEEECcchhcH------------HHHHHHHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eE
Confidence 443 23457999999999842 3456777777753 4467888888888888899988 77 68
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 145 LFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 145 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
+.|++|+.++..++++..+...+.. .++.....++ ..+.| +++++.++++.+.
T Consensus 173 i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~--~~~~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 173 FHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLA--RAAEG-SLRDALSLTDQAI 225 (373)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHH--HHSSS-CHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHCCC-CHHHHHHHHHHHH
Confidence 9999999999999999988764311 1111234455 56666 7888888888774
No 95
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.40 E-value=1.8e-13 Score=139.71 Aligned_cols=183 Identities=19% Similarity=0.226 Sum_probs=107.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeCcc-----ccccccCchHHHHHHHHHHHHhc---CCceEEEcCCc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGPE-----LLNMYLGESERAVRQCFQRARNS---QPCVIFFDEID 84 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~--~~~~~i~~~~-----l~~~~~~~~~~~~~~~~~~~~~~---~~~il~iDe~d 84 (541)
+.++||+||||||||++++++++.++ .++..++|.- +++...+..... ...|..+... .++|||||||+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIW 119 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGG
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHh
Confidence 46899999999999999999999884 4566666642 222111111000 1112111111 35799999998
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHhcCCC--------CCCCeEEEEecCCC-C--CCCccccCCCCCCeEEEecCCCH-
Q psy7673 85 ALCPKRSSLGDNNSSMRIVNQLLTEMDGFE--------GRGGVFLMAATNRP-D--IIDPAVMRPGRFDRILFVNLPNE- 152 (541)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~vi~t~~~~-~--~l~~~l~~~~r~~~~i~~~~p~~- 152 (541)
.+. ...++.|+..+++.. .....++|++||.. + ...+++++ ||...+.+++|+.
T Consensus 120 r~~------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ 185 (500)
T 3nbx_X 120 KAG------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDK 185 (500)
T ss_dssp GCC------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCH
T ss_pred hhc------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhh
Confidence 763 345667887776421 11122456666743 2 23358888 9988899999987
Q ss_pred HHHHHHHHHHHhcCCCCC-CCCCCC--------------------HHHHHhhh-------hcCCCCHHHHHHHHHHHHHH
Q psy7673 153 QDRKEILLALTKQGKDPM-MGEDVD--------------------FDKIAADE-------RCEGFSGADLEQLVKEAREQ 204 (541)
Q Consensus 153 ~~r~~il~~~~~~~~~~~-~~~~~~--------------------~~~l~~~~-------~~~g~~~~dl~~l~~~a~~~ 204 (541)
+++..|++.......... ....+. .+.++... ...|.++|.+..+++.|...
T Consensus 186 ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~ 265 (500)
T 3nbx_X 186 ANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQAS 265 (500)
T ss_dssp HHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHH
Confidence 778888876543211100 000111 12222100 13478999999999998888
Q ss_pred HHHHHhhc
Q psy7673 205 AILEIVNS 212 (541)
Q Consensus 205 a~~~~~~~ 212 (541)
|..+.+..
T Consensus 266 A~l~gr~~ 273 (500)
T 3nbx_X 266 AFFSGRSA 273 (500)
T ss_dssp HHHTTCSB
T ss_pred HhhcCCcc
Confidence 87766544
No 96
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.39 E-value=5.3e-13 Score=147.07 Aligned_cols=178 Identities=22% Similarity=0.292 Sum_probs=123.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc-----c-------CchHHHHHHHHHHHHhcCCceEE
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY-----L-------GESERAVRQCFQRARNSQPCVIF 79 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~-----~-------~~~~~~~~~~~~~~~~~~~~il~ 79 (541)
..++||+||||||||++++++++.+ +.+++.++|+++.... + |... ...+........+++||
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~ 665 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVIL 665 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEE
Confidence 3589999999999999999999998 7899999998765431 1 1111 12233334445568999
Q ss_pred EcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCC-----------------------
Q psy7673 80 FDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNR----------------------- 127 (541)
Q Consensus 80 iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~----------------------- 127 (541)
|||+|.+. ..+++.|+..++... +..+++||+|||.
T Consensus 666 lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~ 733 (854)
T 1qvr_A 666 FDEIEKAH------------PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVF 733 (854)
T ss_dssp ESSGGGSC------------HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EecccccC------------HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHH
Confidence 99999873 356778888888532 1235789999996
Q ss_pred ---CCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCC----C---CCCCCCCHHHHHhhhhcC--CCCHHHHH
Q psy7673 128 ---PDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD----P---MMGEDVDFDKIAADERCE--GFSGADLE 195 (541)
Q Consensus 128 ---~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~----~---~~~~~~~~~~l~~~~~~~--g~~~~dl~ 195 (541)
...+.++|.+ |++..+.|.+|+.+++..|++.++..... . ...++-.+..++ .... .++.|+|+
T Consensus 734 ~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~--~~~~~~~gn~R~L~ 809 (854)
T 1qvr_A 734 KVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLA--ERGYDPVFGARPLR 809 (854)
T ss_dssp HHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHH--HHHCBTTTBTSTHH
T ss_pred HHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHH--HcCCCCCCChHHHH
Confidence 2346777877 99888899999999999999988763210 0 001111233444 3333 56889999
Q ss_pred HHHHHHHHHHHHHHh
Q psy7673 196 QLVKEAREQAILEIV 210 (541)
Q Consensus 196 ~l~~~a~~~a~~~~~ 210 (541)
++++++...+..+..
T Consensus 810 ~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 810 RVIQRELETPLAQKI 824 (854)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888877654
No 97
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=1.6e-12 Score=127.30 Aligned_cols=164 Identities=22% Similarity=0.256 Sum_probs=110.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEeCccccccccCchHHHHHHHHHH--HHhcCCceEEEcCCcccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAG-----INFISVKGPELLNMYLGESERAVRQCFQR--ARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~-----~~~~~i~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~il~iDe~d~l~ 87 (541)
..++||+||+|+|||++++++++.+. ..++.+++++..+. ......+...... .....+.+|+|||+|.+.
T Consensus 46 ~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 123 (327)
T 1iqp_A 46 MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT 123 (327)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC
Confidence 33599999999999999999999863 35788888764321 1111111111100 011346899999999984
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCC
Q psy7673 88 PKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGK 167 (541)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~ 167 (541)
. ...+.|+..++.. ..++.+|++++.+..+.+.+.+ |+. .+.|++|+.++...+++..+...+
T Consensus 124 ~------------~~~~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (327)
T 1iqp_A 124 Q------------DAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEG 186 (327)
T ss_dssp H------------HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred H------------HHHHHHHHHHHhc--CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcC
Confidence 2 2345667766642 3457888889988889999988 886 899999999999999999988643
Q ss_pred CCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 168 DPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
.. .++..+..++ ..+.| +++.+.++++.+.
T Consensus 187 ~~--~~~~~~~~l~--~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 187 LE--LTEEGLQAIL--YIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp CE--ECHHHHHHHH--HHHTT-CHHHHHHHHHHHH
T ss_pred CC--CCHHHHHHHH--HHCCC-CHHHHHHHHHHHH
Confidence 21 1112234444 45555 6777777776553
No 98
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=2.2e-13 Score=143.07 Aligned_cols=194 Identities=16% Similarity=0.181 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----eCccccccccCchH-HH---HHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISV----KGPELLNMYLGESE-RA---VRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i----~~~~l~~~~~~~~~-~~---~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
.++||+||||||||++++++++.++...+.. ++..+......... .. ....+.. ...++|+|||+|.+.
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~---A~~gil~IDEid~l~ 404 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVL---ADGGIAVIDEIDKMR 404 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHH---HSSSEECCTTTTCCC
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEe---cCCCcEEeehhhhCC
Confidence 3899999999999999999999887655432 22333222111100 00 0001111 234799999999984
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCC-----------CCCCeEEEEecCCCC-------------CCCccccCCCCCCe
Q psy7673 88 PKRSSLGDNNSSMRIVNQLLTEMDGFE-----------GRGGVFLMAATNRPD-------------IIDPAVMRPGRFDR 143 (541)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~vi~t~~~~~-------------~l~~~l~~~~r~~~ 143 (541)
+. .+..|++.+++-. .+.++.||+|+|... .+++++++ ||+.
T Consensus 405 ~~------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl 470 (595)
T 3f9v_A 405 DE------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDL 470 (595)
T ss_dssp SH------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSC
T ss_pred Hh------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeE
Confidence 32 3456777776421 134578999999876 89999999 9974
Q ss_pred -EEEecCCCHHHHHHHHHHHHhcCCCCC----CC-------------------CCCCHHHHHhh--h----------hcC
Q psy7673 144 -ILFVNLPNEQDRKEILLALTKQGKDPM----MG-------------------EDVDFDKIAAD--E----------RCE 187 (541)
Q Consensus 144 -~i~~~~p~~~~r~~il~~~~~~~~~~~----~~-------------------~~~~~~~l~~~--~----------~~~ 187 (541)
.+..+.|+.+ ...|+++.+....... +. .+...+.+... . ...
T Consensus 471 ~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~ 549 (595)
T 3f9v_A 471 IFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPI 549 (595)
T ss_dssp CEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCB
T ss_pred EEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccc
Confidence 4555677777 8888888887543110 00 01111122200 0 034
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCC
Q psy7673 188 GFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKP 243 (541)
Q Consensus 188 g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 243 (541)
+.++|.+.++++.|...|..+..+ .|+.+|+.+|+..+..
T Consensus 550 ~~s~R~l~~lirla~a~A~l~~~~----------------~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 550 LITPRQLEALIRISEAYAKMALKA----------------EVTREDAERAINIMRL 589 (595)
T ss_dssp CSSTTTTTHHHHHHHHHHHTTSSC----------------CSSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCcC----------------CCCHHHHHHHHHHHHH
Confidence 678999999999998888766543 3999999999986644
No 99
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=6e-12 Score=124.76 Aligned_cols=162 Identities=13% Similarity=0.210 Sum_probs=106.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CC----------------------------cEEEEeCccccccccCchHHHHHHHHH
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEA-GI----------------------------NFISVKGPELLNMYLGESERAVRQCFQ 68 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~-~~----------------------------~~~~i~~~~l~~~~~~~~~~~~~~~~~ 68 (541)
++|+||+|+||||+++++++++ +- .++.+++.+.. ......++..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~ 114 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLK 114 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------CCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHH
Confidence 9999999999999999999965 11 12222222110 001112333333
Q ss_pred HHH--------------hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCcc
Q psy7673 69 RAR--------------NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPA 134 (541)
Q Consensus 69 ~~~--------------~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~ 134 (541)
.+. ..+|.+|+|||++.+.. ...+.|++.++... .+..+|.+|+.++.+.+.
T Consensus 115 ~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~------------~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~ 180 (354)
T 1sxj_E 115 EVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK------------DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAP 180 (354)
T ss_dssp HHTTTTC------------CCEEEEEECTTSSCH------------HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHH
T ss_pred HHHHhccccccccccccCCCCeEEEEeCccccCH------------HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHH
Confidence 332 22567999999998632 23456677666543 357888889988899999
Q ss_pred ccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q psy7673 135 VMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQ 204 (541)
Q Consensus 135 l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~ 204 (541)
+++ |+ ..+.|++|+.+++.++++..+...+.. ...+..+..++ ..+.| +.|++.++++.+...
T Consensus 181 l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~i~--~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 181 IKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQ-LETKDILKRIA--QASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCE-ECCSHHHHHHH--HHHTT-CHHHHHHHHTHHHHT
T ss_pred HHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCC-CCcHHHHHHHH--HHcCC-CHHHHHHHHHHHHHh
Confidence 998 88 689999999999999999998764321 11022345555 55666 677888887766543
No 100
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.34 E-value=3.8e-12 Score=120.72 Aligned_cols=175 Identities=19% Similarity=0.150 Sum_probs=101.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeCccccccc-----cCchHHHH-------HHHHHHHHhcCCce
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG---INFISVKGPELLNMY-----LGESERAV-------RQCFQRARNSQPCV 77 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~~~~l~~~~-----~~~~~~~~-------~~~~~~~~~~~~~i 77 (541)
..+.++||+||||||||++++++++.+. .+++.++|+.+.... ++...... ...+. ....++
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~---~a~~~~ 103 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFE---RADGGT 103 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHH---HTTTSE
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhh---hcCCcE
Confidence 3457899999999999999999999874 689999998764321 11100000 01111 223579
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-------CCCCccccCCCCC
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP-------DIIDPAVMRPGRF 141 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~-------~~l~~~l~~~~r~ 141 (541)
|||||+|.+.. ..+..|+..++... ...++.||+++|.. ..+.+.+.+ ||
T Consensus 104 l~lDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl 169 (265)
T 2bjv_A 104 LFLDELATAPM------------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--AL 169 (265)
T ss_dssp EEEESGGGSCH------------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HH
T ss_pred EEEechHhcCH------------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hh
Confidence 99999999843 33456666665321 12357889999864 246778877 88
Q ss_pred C-eEEEecCCCH--HHHHHHHHHHHhc----CCCCCCCCCCCHHHHHh-hhhcCCCCHHHHHHHHHHHHHHH
Q psy7673 142 D-RILFVNLPNE--QDRKEILLALTKQ----GKDPMMGEDVDFDKIAA-DERCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 142 ~-~~i~~~~p~~--~~r~~il~~~~~~----~~~~~~~~~~~~~~l~~-~~~~~g~~~~dl~~l~~~a~~~a 205 (541)
. ..+.+++.+. ++...++++++.. .+.. ....++.+.+.. .......+.++|.++++.+...+
T Consensus 170 ~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~-~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 170 AFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLP-LFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp CSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCS-SCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred cCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCC-cccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 5 3445544433 4455555555433 2211 001233332221 02222235678888888876543
No 101
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.33 E-value=1.9e-11 Score=119.76 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=112.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeCccccccccCchHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN------------------------FISVKGPELLNMYLGESERAVRQC 66 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~------------------------~~~i~~~~l~~~~~~~~~~~~~~~ 66 (541)
..+.+..+||+||+|+|||++++++++.+... +..++..+- ........++.+
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l 96 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREV 96 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHH
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHH
Confidence 45677789999999999999999999988432 333333210 011223445666
Q ss_pred HHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 67 FQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 67 ~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
++.+.. ..+.|++|||+|.+.. ...+.|++.+++ ...++++|.+|+.++.+.+.+++ |+.
T Consensus 97 ~~~~~~~~~~~~~kvviIdead~l~~------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~ 160 (334)
T 1a5t_A 97 TEKLNEHARLGGAKVVWVTDAALLTD------------AAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR 160 (334)
T ss_dssp HHHTTSCCTTSSCEEEEESCGGGBCH------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred HHHHhhccccCCcEEEEECchhhcCH------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce
Confidence 665542 2458999999999842 345788888885 34567888888888999999998 884
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAR 202 (541)
Q Consensus 143 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~ 202 (541)
.+.|++|+.++..++++..+. . ++.....++ ..+.| +++.+.++++...
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~~------~-~~~~~~~l~--~~s~G-~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSREVT------M-SQDALLAAL--RLSAG-SPGAALALFQGDN 209 (334)
T ss_dssp -EEECCCCCHHHHHHHHHHHCC------C-CHHHHHHHH--HHTTT-CHHHHHHTTSSHH
T ss_pred -eeeCCCCCHHHHHHHHHHhcC------C-CHHHHHHHH--HHcCC-CHHHHHHHhccch
Confidence 799999999999999987651 1 122234444 45555 6777777766543
No 102
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.32 E-value=2.4e-12 Score=124.05 Aligned_cols=176 Identities=18% Similarity=0.178 Sum_probs=102.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc-----cCch----HH---HHHHHHHHHHhcCCce
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY-----LGES----ER---AVRQCFQRARNSQPCV 77 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~-----~~~~----~~---~~~~~~~~~~~~~~~i 77 (541)
..+.++||+||||||||++++++++.. +.+++.++|..+.... ++.. .. .....|..+ ..++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~ 99 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA---DGGT 99 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHH---TTSE
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhc---CCCE
Confidence 456789999999999999999999976 6789999998764321 1110 00 011223333 3479
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-------CCCCccccCCCCC
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP-------DIIDPAVMRPGRF 141 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~-------~~l~~~l~~~~r~ 141 (541)
|||||+|.+.. ..+..|+..++... ...++.||++||.. ..+.+.|.. ||
T Consensus 100 L~LDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl 165 (304)
T 1ojl_A 100 LFLDEIGDISP------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RL 165 (304)
T ss_dssp EEEESCTTCCH------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HH
T ss_pred EEEeccccCCH------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hc
Confidence 99999999843 34556777776532 12357899999865 235566666 66
Q ss_pred C-eEEEecCCC--HHHHHHHHHHHHhcCCC--CCCCCCCCHHHHHh-hhhcCCCCHHHHHHHHHHHHHHH
Q psy7673 142 D-RILFVNLPN--EQDRKEILLALTKQGKD--PMMGEDVDFDKIAA-DERCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 142 ~-~~i~~~~p~--~~~r~~il~~~~~~~~~--~~~~~~~~~~~l~~-~~~~~g~~~~dl~~l~~~a~~~a 205 (541)
. ..|.++++. .++...++++++..... ......++.+.+.. ......-+.++|.++++++...+
T Consensus 166 ~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 166 NVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp SSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred CeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 4 234444443 34455566665543210 00111233222221 13331225688888888876543
No 103
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.30 E-value=9.8e-12 Score=125.93 Aligned_cols=203 Identities=15% Similarity=0.116 Sum_probs=126.1
Q ss_pred CCCcEEEE--EcCCCCcHHHHHHHHHHHh---------CCcEEEEeCcccccc------c----------cCc-hHHHHH
Q psy7673 13 STPSGVLL--CGPPGCGKTLLAKAVANEA---------GINFISVKGPELLNM------Y----------LGE-SERAVR 64 (541)
Q Consensus 13 ~~~~~~ll--~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~~------~----------~~~-~~~~~~ 64 (541)
..+..++| +||+|+|||++++.+++.+ +..+++++|...... . .+. ....+.
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 127 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILK 127 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 35668999 9999999999999999876 567889997532110 0 011 112223
Q ss_pred HHHHHHH-hcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC-CC--CCeEEEEecCCCC---CCC---cc
Q psy7673 65 QCFQRAR-NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-GR--GGVFLMAATNRPD---IID---PA 134 (541)
Q Consensus 65 ~~~~~~~-~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~--~~~~vi~t~~~~~---~l~---~~ 134 (541)
.+..... ...|.+|+|||+|.+..... .....+..++..+.... .. .++.||++++.++ .++ +.
T Consensus 128 ~l~~~l~~~~~~~llvlDe~~~l~~~~~------~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~ 201 (412)
T 1w5s_A 128 ALVDNLYVENHYLLVILDEFQSMLSSPR------IAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQ 201 (412)
T ss_dssp HHHHHHHHHTCEEEEEEESTHHHHSCTT------SCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHH
T ss_pred HHHHHHHhcCCeEEEEEeCHHHHhhccC------cchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcch
Confidence 3333222 24478999999999853210 11234455555554332 12 5688888887554 233 55
Q ss_pred ccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcC------CCCHHHHHHHHHHHHHHHHHH
Q psy7673 135 VMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCE------GFSGADLEQLVKEAREQAILE 208 (541)
Q Consensus 135 l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~dl~~l~~~a~~~a~~~ 208 (541)
+.+ ++...+.+++++.++..++++..+.........++.....+. ..+. | .++.+..+++.+...+..+
T Consensus 202 ~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~ 276 (412)
T 1w5s_A 202 VES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS--DVYGEDKGGDG-SARRAIVALKMACEMAEAM 276 (412)
T ss_dssp HHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH--HHHCGGGTSCC-CHHHHHHHHHHHHHHHHHT
T ss_pred hhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH--HHHHHhccCCC-cHHHHHHHHHHHHHHHHHc
Confidence 556 666669999999999999998877632211111122234444 5666 6 6888999988887666433
Q ss_pred HhhcccCCCcCCCCCccccccCHHHHHHHHHhcC
Q psy7673 209 IVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIK 242 (541)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 242 (541)
.. ..++.+++..++....
T Consensus 277 ~~----------------~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 277 GR----------------DSLSEDLVRKAVSENE 294 (412)
T ss_dssp TC----------------SSCCHHHHHHHHHHC-
T ss_pred CC----------------CCCCHHHHHHHHHHHh
Confidence 21 2488899988887653
No 104
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=99.26 E-value=2.9e-11 Score=120.07 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=116.5
Q ss_pred cccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhhhcC
Q psy7673 297 SVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNLLSS 376 (541)
Q Consensus 297 ~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~~ 376 (541)
.++||+++++++|++. ++|++|++|++|.. .| ...||+||+|+|++.+.++ .+.+
T Consensus 189 ~p~gG~~~l~~~l~~g----~~i~l~~~V~~i~~---~v--------~~~~D~VV~a~p~~~~~~~----------~l~~ 243 (367)
T 1i8t_A 189 IPVGGYTKLIEKMLEG----VDVKLGIDFLKDKD---SL--------ASKAHRIIYTGPIDQYFDY----------RFGA 243 (367)
T ss_dssp CBTTCHHHHHHHHHTT----SEEECSCCGGGSHH---HH--------HTTEEEEEECSCHHHHTTT----------TTCC
T ss_pred ccCCCHHHHHHHHhcC----CEEEeCCceeeech---hh--------hccCCEEEEeccHHHHHHH----------hhCC
Confidence 7899999999999983 59999999999952 22 2469999999999987654 3667
Q ss_pred CCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccC-CCcEEEEEEecCccCCcccCCCCHHHHHHHHH
Q psy7673 377 IEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQ-ADWTILTVMMGGAWYDTYFKGQSKEYILDIAC 455 (541)
Q Consensus 377 ~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~e~~~~~~~ 455 (541)
++|.++..+++.++....+ +.+++...+.+.+...+++.++..+. .+.+.++.-..+.
T Consensus 244 l~y~s~~~v~~~~d~~~~~--~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~v~~e~~~~------------------- 302 (367)
T 1i8t_A 244 LEYRSLKFETERHEFPNFQ--GNAVINFTDANVPYTRIIEHKHFDYVETKHTVVTKEYPLE------------------- 302 (367)
T ss_dssp CCEEEEEEEEEEESSSCSS--SSSEEEECCTTSSCSEEEEGGGGSCCCCSCEEEEEEEEEE-------------------
T ss_pred CCCceEEEEEEEeccccCC--CCeEEEeCCCCCceeeEEeecccCCCCCCCEEEEEEEecc-------------------
Confidence 8999999999999865443 23333333334455566655554332 2334444333221
Q ss_pred HHHHhHcCCCCCCceeEeeecc-CCCCCCC---CCHHHHHHHHHHHHhhCCCCEEEEcCC--CCCCChHHHHHHHHHHHH
Q psy7673 456 RYVHEILDMPRTPHAQHVEILK-ACIPQYT---LGHAARVKDIQGYIDTHQLPLYLTGSS--YDGVGVNDVIALSKKAVE 529 (541)
Q Consensus 456 ~~l~~~~g~~~~~~~~~~~~w~-~a~p~~~---~g~~~~~~~~~~~l~~~~~~l~laG~~--~~g~~v~~ai~sg~~aa~ 529 (541)
|. ...|+|+ .++......+.+.++. .+++++||.| +.+.++++||.||.++|+
T Consensus 303 --------------------~~~~~~p~ypv~~~~~~~~~~~~~~~~~~-~~~~~~~Gr~~~~~y~~~~d~i~sa~~~a~ 361 (367)
T 1i8t_A 303 --------------------WKVGDEPYYPVNDNKNMELFKKYRELASR-EDKVIFGGRLAEYKYYDMHQVISAALYQVK 361 (367)
T ss_dssp --------------------CCTTSCCCEECCSHHHHHHHHHHHHHHHH-CTTEEECSTTTTTSCCCHHHHHHHHHHHHH
T ss_pred --------------------cCCCCeeecccCChhHHHHHHHHHHHHhc-CCCEEEcccceeeEecCHHHHHHHHHHHHH
Confidence 21 2344444 4555555566554543 4699999987 778899999999999999
Q ss_pred HHh
Q psy7673 530 SIK 532 (541)
Q Consensus 530 ~i~ 532 (541)
+++
T Consensus 362 ~~~ 364 (367)
T 1i8t_A 362 NIM 364 (367)
T ss_dssp HHH
T ss_pred HHh
Confidence 984
No 105
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=4.1e-12 Score=125.05 Aligned_cols=127 Identities=18% Similarity=0.218 Sum_probs=92.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEeCccccccccCchHHHHHHHHHHHHh------cCCceEEEcCCcc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAG-----INFISVKGPELLNMYLGESERAVRQCFQRARN------SQPCVIFFDEIDA 85 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~-----~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDe~d~ 85 (541)
+++|+||+|||||++++++++.+. ..+..+++++..+ ...++..+..... ..+.|++|||+|.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~ 121 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADA 121 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCC
Confidence 399999999999999999999873 3477777765321 1222333322221 2368999999999
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhc
Q psy7673 86 LCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQ 165 (541)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~ 165 (541)
+.. ...+.|+..++... ....+|.++|.+..+.+.+++ |+. .+.|..++.++..+++...+..
T Consensus 122 l~~------------~~~~~L~~~le~~~--~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~ 184 (340)
T 1sxj_C 122 MTN------------AAQNALRRVIERYT--KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVH 184 (340)
T ss_dssp SCH------------HHHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred CCH------------HHHHHHHHHHhcCC--CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHH
Confidence 842 23456777777533 346777888888889999998 885 7899999999999999998865
Q ss_pred C
Q psy7673 166 G 166 (541)
Q Consensus 166 ~ 166 (541)
.
T Consensus 185 ~ 185 (340)
T 1sxj_C 185 E 185 (340)
T ss_dssp T
T ss_pred c
Confidence 3
No 106
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=99.24 E-value=5.5e-11 Score=118.78 Aligned_cols=168 Identities=11% Similarity=0.096 Sum_probs=115.8
Q ss_pred cccccHHHHHHHHHHhccCCcEEeccceee-EEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhhhc
Q psy7673 297 SVEGGLQTIVNTLGEHLSNKVEVKMDTTCT-NLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNLLS 375 (541)
Q Consensus 297 ~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~-~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~ 375 (541)
.++||+++++++|++.+ +++|++|++|+ +|.. .||+||+|+|++.+.+++ +.
T Consensus 193 ~p~gG~~~l~~~l~~~~--g~~I~l~~~V~~~i~~---------------~~d~VI~a~p~~~~~~~~----------lg 245 (384)
T 2bi7_A 193 MPKCGYTQMIKSILNHE--NIKVDLQREFIVEERT---------------HYDHVFYSGPLDAFYGYQ----------YG 245 (384)
T ss_dssp EETTHHHHHHHHHHCST--TEEEEESCCCCGGGGG---------------GSSEEEECSCHHHHTTTT----------TC
T ss_pred EECcCHHHHHHHHHhcC--CCEEEECCeeehhhhc---------------cCCEEEEcCCHHHHHHhh----------cC
Confidence 78999999999999854 56899999999 8842 299999999999988762 56
Q ss_pred CCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccC--CCcEEEEEEecCccCCcccCCCCHHHHHHH
Q psy7673 376 SIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQ--ADWTILTVMMGGAWYDTYFKGQSKEYILDI 453 (541)
Q Consensus 376 ~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~--~~~~~l~~~~~g~~~~~~~~~~~~e~~~~~ 453 (541)
+++|.++..+++.++ ...+ +.+++.....+.+...+++.++..+. .+.+.++....+
T Consensus 246 ~l~y~s~~~v~~~~d-~~~~--~~~~~n~~~~~~~~~ri~~~~~~~~~~~~~~~~v~~e~~~------------------ 304 (384)
T 2bi7_A 246 RLGYRTLDFKKFTYQ-GDYQ--GCAVMNYCSVDVPYTRITEHKYFSPWEQHDGSVCYKEYSR------------------ 304 (384)
T ss_dssp CCCEEEEEEEEEEEE-SCSS--SSSEEEECSTTSSSSEEEEGGGGCTTSCCSEEEEEEEEEE------------------
T ss_pred CCCcceEEEEEEEeC-CCCC--CCEEEEecCCCCCeeeEEEeeccCCCCCCCCEEEEEEEec------------------
Confidence 789999999999997 3222 23342222333344445444433332 233444443321
Q ss_pred HHHHHHhHcCCCCCCceeEeeecc-CC---CCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCC--CCCCChHHHHHHHHHH
Q psy7673 454 ACRYVHEILDMPRTPHAQHVEILK-AC---IPQYTLGHAARVKDIQGYIDTHQLPLYLTGSS--YDGVGVNDVIALSKKA 527 (541)
Q Consensus 454 ~~~~l~~~~g~~~~~~~~~~~~w~-~a---~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~--~~g~~v~~ai~sg~~a 527 (541)
.|. .. +|.++.++......+++.+. ..+++++||.| +.+.++++||.||.++
T Consensus 305 ---------------------~~~~~~~p~ypv~~~~~~~~~~~~~~~~~-~~~~~~~~Gr~~~~~~~~~~d~i~sa~~~ 362 (384)
T 2bi7_A 305 ---------------------ACEENDIPYYPIRQMGEMALLEKYLSLAE-NETNITFVGRLGTYRYLDMDVTIAEALKT 362 (384)
T ss_dssp ---------------------ECCTTCCCCEECCCHHHHHHHHHHHHHHT-TCSSEEECHHHHTTCCCCHHHHHHHHHHH
T ss_pred ---------------------cccCCCccccccCChhHHHHHHHHHHHHh-cCCCEEEccccEEEEeCCHHHHHHHHHHH
Confidence 232 33 44555578777777776554 23699999986 5688999999999999
Q ss_pred HHHHhhh
Q psy7673 528 VESIKWQ 534 (541)
Q Consensus 528 a~~i~~~ 534 (541)
|++++..
T Consensus 363 a~~~~~~ 369 (384)
T 2bi7_A 363 AEVYLNS 369 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 9999553
No 107
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=1.1e-10 Score=111.99 Aligned_cols=125 Identities=9% Similarity=0.101 Sum_probs=96.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEeCccccccccCchHHHHHHHHHHHHhc----CCceEEEcCCc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA------GINFISVKGPELLNMYLGESERAVRQCFQRARNS----QPCVIFFDEID 84 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~------~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~il~iDe~d 84 (541)
..++||+||+|+|||++++++++.+ +..+++++.++- ......++.++..+... ...|++|||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 6689999999999999999999864 346777776421 12233456666666532 24799999999
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCCCHHHHHHHHHHHH
Q psy7673 85 ALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~ 163 (541)
.+.. ...+.|++.+++ .+.+.++|.+|+.++.+.+.+++ | .+.|++|+.++..++++..+
T Consensus 93 ~lt~------------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 93 RMTQ------------QAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GBCH------------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HhCH------------HHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9842 346788999985 34456777888888899999999 8 79999999999999998887
No 108
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.19 E-value=3e-11 Score=103.00 Aligned_cols=92 Identities=16% Similarity=0.140 Sum_probs=66.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPK 89 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~ 89 (541)
..+.++||+||||||||++++++++.. +.+++ ++|..+... ......+..+ ..++|||||+|.+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a---~~g~l~ldei~~l~~- 90 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA---QGGTLVLSHPEHLTR- 90 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH---TTSCEEEECGGGSCH-
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc---CCcEEEEcChHHCCH-
Confidence 456789999999999999999999877 67888 999887544 1223334443 347999999999843
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy7673 90 RSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP 128 (541)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~ 128 (541)
..+..|+..+... ..++.+|++||.+
T Consensus 91 -----------~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 91 -----------EQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp -----------HHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred -----------HHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 2345666666432 3356788888853
No 109
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=99.19 E-value=2.4e-11 Score=122.18 Aligned_cols=175 Identities=10% Similarity=0.039 Sum_probs=115.8
Q ss_pred cccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeE-eeCEEEEcCChhHHHhhhcccCchhHhhhc
Q psy7673 297 SVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHI-EANHVVSALPAPKLGMLLHKQHPTLGNLLS 375 (541)
Q Consensus 297 ~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~-~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~ 375 (541)
.++||+++++++|++.+ |++|++|++|++|.+. | + .+ .||+||+|+|++++.++ .+.
T Consensus 199 ~p~gG~~~l~~~l~~~~--g~~I~l~~~V~~I~~~---v-----~--~~~~aD~VI~t~p~~~l~~~----------~l~ 256 (399)
T 1v0j_A 199 LPTDGYTAWLQNMAADH--RIEVRLNTDWFDVRGQ---L-----R--PGSPAAPVVYTGPLDRYFDY----------AEG 256 (399)
T ss_dssp CBTTHHHHHHHHHTCST--TEEEECSCCHHHHHHH---H-----T--TTSTTCCEEECSCHHHHTTT----------TTC
T ss_pred cccccHHHHHHHHHhcC--CeEEEECCchhhhhhh---h-----h--hcccCCEEEECCcHHHHHhh----------hhC
Confidence 78999999999999865 4689999999999642 2 1 34 69999999999998776 356
Q ss_pred CCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccC----CCcEEEEEEecCccCCcccCCCCHHHHH
Q psy7673 376 SIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQ----ADWTILTVMMGGAWYDTYFKGQSKEYIL 451 (541)
Q Consensus 376 ~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~----~~~~~l~~~~~g~~~~~~~~~~~~e~~~ 451 (541)
+++|.++..+.+.++.+..... +++...+.+.+...+++.++.-+. .+.+.++....+
T Consensus 257 ~l~y~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~v~~e~~~---------------- 318 (399)
T 1v0j_A 257 RLGWRTLDFEVEVLPIGDFQGT--AVMNYNDLDVPYTRIHEFRHFHPERDYPTDKTVIMREYSR---------------- 318 (399)
T ss_dssp CCCEEEEEEEEEEESSSCSSSS--SEEEECCTTSSCSEEEEGGGGCTTSCCCSSCEEEEEEEEE----------------
T ss_pred CCCcceEEEEEEEEccccCCCC--eEEEeCCCCCCcceeEeecCCCCCCcCCCCCeEEEEeecc----------------
Confidence 7899999999999975433322 222222222333344444332121 123344443321
Q ss_pred HHHHHHHHhHcCCCCCCceeEeeecc-CCCC---CCCCCHHHHHHHHHHHHhhC--CCCEEEEcCC--CCCCChHHHHHH
Q psy7673 452 DIACRYVHEILDMPRTPHAQHVEILK-ACIP---QYTLGHAARVKDIQGYIDTH--QLPLYLTGSS--YDGVGVNDVIAL 523 (541)
Q Consensus 452 ~~~~~~l~~~~g~~~~~~~~~~~~w~-~a~p---~~~~g~~~~~~~~~~~l~~~--~~~l~laG~~--~~g~~v~~ai~s 523 (541)
.|. ...| .++.++...+..+++.+... .+++++||.| +.+.++++||.|
T Consensus 319 -----------------------~~~~~~~~~ypv~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~e~~i~s 375 (399)
T 1v0j_A 319 -----------------------FAEDDDEPYYPINTEADRALLATYRARAKSETASSKVLFGGRLGTYQYLDMHMAIAS 375 (399)
T ss_dssp -----------------------ECCTTSCCCEECCCHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHTCCCCHHHHHHH
T ss_pred -----------------------cccCCCccccccCcHHHHHHHHHHHHHHHhccccCCEEEccceEEEEecCHHHHHHH
Confidence 132 2344 44456666666666554321 1599999987 677899999999
Q ss_pred HHHHHHHHhhh
Q psy7673 524 SKKAVESIKWQ 534 (541)
Q Consensus 524 g~~aa~~i~~~ 534 (541)
|.++|++|+..
T Consensus 376 a~~~a~~l~~~ 386 (399)
T 1v0j_A 376 ALNMYDNVLAP 386 (399)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHHhhh
Confidence 99999999654
No 110
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.17 E-value=9.3e-12 Score=105.85 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=65.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSS 92 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~ 92 (541)
..+.++||+||||||||++++++++..+ +++.++|.++.... ....+..+ ..++|||||+|.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a---~~~~l~lDei~~l~~~--- 90 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA---EGGVLYVGDIAQYSRN--- 90 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT---TTSEEEEEECTTCCHH---
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC---CCCeEEEeChHHCCHH---
Confidence 3556899999999999999999998888 99999998765432 33444443 3479999999998432
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy7673 93 LGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP 128 (541)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~ 128 (541)
.+..|+..++... ..++.+|++||.+
T Consensus 91 ---------~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 ---------IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp ---------HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred ---------HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 3345555555322 3457788888743
No 111
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.09 E-value=1.3e-10 Score=123.10 Aligned_cols=137 Identities=21% Similarity=0.231 Sum_probs=84.0
Q ss_pred CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCC-------------------CCCCCeEEEEecCCC--CCCC
Q psy7673 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGF-------------------EGRGGVFLMAATNRP--DIID 132 (541)
Q Consensus 74 ~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-------------------~~~~~~~vi~t~~~~--~~l~ 132 (541)
.+++|||||++.+.+ ..++.|++.|+.- .-+.++.||+++|.. +.++
T Consensus 201 ~~gvL~LDEi~~l~~------------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~ 268 (604)
T 3k1j_A 201 HKGVLFIDEIATLSL------------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMH 268 (604)
T ss_dssp TTSEEEETTGGGSCH------------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSC
T ss_pred CCCEEEEechhhCCH------------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcC
Confidence 457999999999832 3455666666521 112357899999975 5799
Q ss_pred ccccCCCCCC---eEEEecCC---CHHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHh-hhhcCCC------CHHHHHH
Q psy7673 133 PAVMRPGRFD---RILFVNLP---NEQDRKEILLALTKQGK---DPMMGEDVDFDKIAA-DERCEGF------SGADLEQ 196 (541)
Q Consensus 133 ~~l~~~~r~~---~~i~~~~p---~~~~r~~il~~~~~~~~---~~~~~~~~~~~~l~~-~~~~~g~------~~~dl~~ 196 (541)
++|++ ||. ..+.|+.. +.+....+++.+..... .....++-.+..+.. ..+..|- +.|++.+
T Consensus 269 ~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~ 346 (604)
T 3k1j_A 269 PALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGG 346 (604)
T ss_dssp HHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHH
T ss_pred HHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHH
Confidence 99998 885 45555422 45666666665544321 111111111222321 1122452 6899999
Q ss_pred HHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHh
Q psy7673 197 LVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKR 240 (541)
Q Consensus 197 l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 240 (541)
+++.|...|..+.. ..|+.+|+.+|++.
T Consensus 347 llr~A~~~A~~~~~----------------~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 347 IVRAAGDIAVKKGK----------------KYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHTTC----------------SSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc----------------ccccHHHHHHHHHh
Confidence 99999777754432 24999999999964
No 112
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.01 E-value=4.4e-10 Score=85.24 Aligned_cols=77 Identities=27% Similarity=0.390 Sum_probs=67.0
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccc
Q psy7673 147 VNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQ 226 (541)
Q Consensus 147 ~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (541)
-.+|+.++|.+||+.++++. .+..++|++.++ +.|+|||+.||.++|+.|...|+.+..
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~---~l~~dvdl~~LA--~~T~G~SGADL~~l~~eAa~~alr~~~---------------- 66 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKM---NLTRGINLRKIA--ELMPGASGAEVKGVCTEAGMYALRERR---------------- 66 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTS---EECTTCCCHHHH--HTCSSCCHHHHHHHHHHHHHHHHHTTC----------------
T ss_pred CCCcCHHHHHHHHHHHHcCC---CCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHcC----------------
Confidence 46899999999999999875 245789999999 899999999999999999999987642
Q ss_pred cccCHHHHHHHHHhcCCC
Q psy7673 227 VTIGFRHFDIALKRIKPS 244 (541)
Q Consensus 227 ~~i~~~d~~~al~~~~~~ 244 (541)
..|+.+||.+|++.++|.
T Consensus 67 ~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 67 VHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp SEECHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHccC
Confidence 359999999999988764
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.96 E-value=2.9e-10 Score=97.01 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
++..++|+||+|+|||+++++++..+ +..+++++..++... ....++.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 66789999999999999999999988 777899998877543 012357899999998864
No 114
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.96 E-value=1.6e-09 Score=80.98 Aligned_cols=75 Identities=28% Similarity=0.413 Sum_probs=65.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCcccc
Q psy7673 148 NLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQV 227 (541)
Q Consensus 148 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 227 (541)
+.|+.++|.+||+.++.+.. ...++++..++ +.|+|||+.||.++|+.|...|+.+.. .
T Consensus 1 plPd~~~R~~Il~~~l~~~~---~~~~~dl~~la--~~t~G~SGADi~~l~~eA~~~a~~~~~----------------~ 59 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMN---LTRGINLRKIA--ELMPGASGAEVKGVCTEAGMYALRERR----------------V 59 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSE---ECTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC----------------S
T ss_pred CcCCHHHHHHHHHHHhcCCC---CCCccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCC----------------C
Confidence 57999999999999998753 45789999999 899999999999999999999987632 3
Q ss_pred ccCHHHHHHHHHhcCC
Q psy7673 228 TIGFRHFDIALKRIKP 243 (541)
Q Consensus 228 ~i~~~d~~~al~~~~~ 243 (541)
.|+.+||.+|++++..
T Consensus 60 ~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 60 HVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp EECHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5999999999998744
No 115
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.95 E-value=1.7e-09 Score=82.63 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccC
Q psy7673 151 NEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIG 230 (541)
Q Consensus 151 ~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~ 230 (541)
+.++|.+||+.++++. .+.+++|+..++ +.|+|||+.||.++|+.|...|+++.. ..|+
T Consensus 2 d~~~R~~Il~~~~~~~---~~~~dvdl~~lA--~~t~G~SGADl~~l~~eAa~~a~r~~~----------------~~i~ 60 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSM---SVERGIRWELIS--RLCPNSTGAELRSVCTEAGMFAIRARR----------------KVAT 60 (88)
T ss_dssp CSSHHHHHHHHHHTTS---CBCSCCCHHHHH--HTCSSCCHHHHHHHHHHHHHHHHHHSC----------------SSBC
T ss_pred CHHHHHHHHHHHHCCC---CCCCccCHHHHH--HHcCCCcHHHHHHHHHHHHHHHHHhcc----------------ccCC
Confidence 5678999999999874 345789999999 899999999999999999999988743 2499
Q ss_pred HHHHHHHHHhcCCCCChh
Q psy7673 231 FRHFDIALKRIKPSVSKA 248 (541)
Q Consensus 231 ~~d~~~al~~~~~~~s~~ 248 (541)
.+||.+|++++.+....+
T Consensus 61 ~~df~~Al~~v~~~~~~~ 78 (88)
T 3vlf_B 61 EKDFLKAVDKVISGYKKF 78 (88)
T ss_dssp HHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHhcCcccc
Confidence 999999999998876544
No 116
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.95 E-value=1e-09 Score=83.16 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccC
Q psy7673 151 NEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIG 230 (541)
Q Consensus 151 ~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~ 230 (541)
+.++|.+||+.++++.. +.+++++..++ +.|+|||+.||.++|+.|...|+.+.. ..|+
T Consensus 2 d~~~R~~Il~~~l~~~~---~~~~vdl~~la--~~t~G~SGADi~~l~~eA~~~a~~~~~----------------~~i~ 60 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMN---LSEEVDLEDYV--ARPDKISGADINSICQESGMLAVRENR----------------YIVL 60 (83)
T ss_dssp CHHHHHHHHHHHHTTSC---BCTTCCTHHHH--TSSCCCCHHHHHHHHHHHHHGGGTSCC----------------SSBC
T ss_pred CHHHHHHHHHHHhCCCC---CCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhcc----------------CCcC
Confidence 67999999999998752 44688999999 899999999999999999998875431 3599
Q ss_pred HHHHHHHHHhcCCCCChhhhh
Q psy7673 231 FRHFDIALKRIKPSVSKADCK 251 (541)
Q Consensus 231 ~~d~~~al~~~~~~~s~~~~~ 251 (541)
.+||..|++.++|+.+ +...
T Consensus 61 ~~df~~Al~~~~ps~~-~~l~ 80 (83)
T 3aji_B 61 AKDFEKAYKTVIKKDE-QEHE 80 (83)
T ss_dssp HHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHccCch-HHHH
Confidence 9999999999999977 4443
No 117
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.89 E-value=3.9e-09 Score=92.89 Aligned_cols=122 Identities=8% Similarity=-0.005 Sum_probs=87.0
Q ss_pred CCceEEEeecccccCC-CcEEEEEEecCccCCcccCCCCHHHHHHHHHHHHHhHcCCCCCCc-ee--Eeeecc------C
Q psy7673 409 LPILGVVFDSCCFEQA-DWTILTVMMGGAWYDTYFKGQSKEYILDIACRYVHEILDMPRTPH-AQ--HVEILK------A 478 (541)
Q Consensus 409 ~~~~~~~~~s~~~~~~-~~~~l~~~~~g~~~~~~~~~~~~e~~~~~~~~~l~~~~g~~~~~~-~~--~~~~w~------~ 478 (541)
.++..+.+.|...... ...+|..|+.|..+..+.. ++++++++.+++.|++++|....+. .. ..++|. +
T Consensus 18 ~pi~~i~d~S~~~~~~g~~~~L~~~~~g~~A~~~~~-l~~~e~~~~~l~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G 96 (181)
T 2e1m_C 18 NPNRFMYYPSHPVPGTQGGVVLAAYSWSDDAARWDS-FDDAERYGYALENLQSVHGRRIEVFYTGAGQTQSWLRDPYACG 96 (181)
T ss_dssp STTBEEECCSSCCTTCSCEEEEEEEEEHHHHHHHTT-SCTTTTHHHHHHHHHHHHCGGGGGTEEEEEEEEESSSCTTTSS
T ss_pred CCeEEEEECCCCcCCCCCCEEEEEEcCChHHHHHHc-CCHHHHHHHHHHHHHHHhCCCcHhhccCcceecccCCCCCCCC
Confidence 4565555555433222 3468888887776666555 7889999999999999997544444 45 789994 3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCC--CCChHHHHHHHHHHHHHHhhh
Q psy7673 479 CIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYD--GVGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 479 a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~--g~~v~~ai~sg~~aa~~i~~~ 534 (541)
++..+.+|.... ....+..+.++|||||+++. ...|++|++||.++|++|+..
T Consensus 97 a~s~~~pg~~~~---~~~~l~~p~grl~FAGe~ts~~~g~~eGAl~SG~raA~~i~~~ 151 (181)
T 2e1m_C 97 EAAVYTPHQMTA---FHLDVVRPEGPVYFAGEHVSLKHAWIEGAVETAVRAAIAVNEA 151 (181)
T ss_dssp SEECCCTTHHHH---HHHHHHSCBTTEEECSGGGTTSTTSHHHHHHHHHHHHHHHHTC
T ss_pred cccCcCCCchHH---HHHHHhCCCCcEEEEEHHHcCCccCHHHHHHHHHHHHHHHHHH
Confidence 444566776533 22234456779999999986 567999999999999999554
No 118
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.88 E-value=7.7e-09 Score=123.46 Aligned_cols=140 Identities=21% Similarity=0.388 Sum_probs=94.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEeCccccccccCchHHHHHHHHHHHH---------------hcCCce
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA-GINFISVKGPELLNMYLGESERAVRQCFQRAR---------------NSQPCV 77 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~-~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~i 77 (541)
.++++||+||||||||++++.+.... +..++.++++...+ ...+...+.... ..++.|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 45799999999999999996554444 77888888876532 223334443321 112369
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCC--------CCCeEEEEecCCCC-----CCCccccCCCCCCeE
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEG--------RGGVFLMAATNRPD-----IIDPAVMRPGRFDRI 144 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--------~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~ 144 (541)
|||||++....++-+ .+.....+..+++. .+... -.++.+|+++|++. .++++++| || .+
T Consensus 1340 lFiDEinmp~~d~yg---~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~v 1412 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYG---SQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AI 1412 (2695)
T ss_dssp EEEETTTCSCCCSSS---CCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EE
T ss_pred EEecccccccccccC---chhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eE
Confidence 999999874433211 11233333343321 11111 12489999999984 79999999 89 68
Q ss_pred EEecCCCHHHHHHHHHHHHhcC
Q psy7673 145 LFVNLPNEQDRKEILLALTKQG 166 (541)
Q Consensus 145 i~~~~p~~~~r~~il~~~~~~~ 166 (541)
+.++.|+.+++..|+..++...
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 119
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.87 E-value=1.2e-09 Score=103.35 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=66.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeC--ccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKG--PELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPK 89 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~ 89 (541)
..+++.++|+||||+|||+++.+++.+.+.++.+++. .+..+.+....+..+..+...+...+ +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 4455668999999999999999999876555444444 33333333445555666666665544 9999999998654
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCcc
Q psy7673 90 RSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPA 134 (541)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~ 134 (541)
...........+.+..++..|..+....++.+|+++|. ...++.
T Consensus 198 ~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp-~s~dea 241 (331)
T 2vhj_A 198 AGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP-TSNDDK 241 (331)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHTCEEEEECCC-SSCSSS
T ss_pred cccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC-cccchh
Confidence 32210000111223333333332222335677888773 334433
No 120
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.83 E-value=2.8e-09 Score=94.42 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=49.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCccccccccCchHHH-HHHHHHHHHhcCCceEEEcCCcc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGPELLNMYLGESERA-VRQCFQRARNSQPCVIFFDEIDA 85 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~il~iDe~d~ 85 (541)
....+.+++|+||+|+|||+++++++..+ +..++++++.++........... ....+.. ...|.+|+|||++.
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~ 111 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGS 111 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCC
Confidence 34567899999999999999999999877 66778888776643321110000 0011222 23578999999985
Q ss_pred c
Q psy7673 86 L 86 (541)
Q Consensus 86 l 86 (541)
.
T Consensus 112 ~ 112 (180)
T 3ec2_A 112 E 112 (180)
T ss_dssp S
T ss_pred C
Confidence 4
No 121
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.73 E-value=2e-08 Score=89.64 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=80.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh--------C-CcEEEEeCcccccccc-------------Cc--hHHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA--------G-INFISVKGPELLNMYL-------------GE--SERAVRQCFQRA 70 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~--------~-~~~~~i~~~~l~~~~~-------------~~--~~~~~~~~~~~~ 70 (541)
+...|++|+||+|||+++....... + .+++..++.++..... .+ ....+...+. .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~ 83 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK-K 83 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-S
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-c
Confidence 4568899999999999988865442 4 6666777766543221 00 0011222111 1
Q ss_pred HhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEecCC
Q psy7673 71 RNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLP 150 (541)
Q Consensus 71 ~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~~~p 150 (541)
.....+||+|||++.+.+.+....+. . .++..++. .....+-+|.+++.+..|+..+++ |+...+++..|
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~e~---~----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGSKI---P----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTCCC---C----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cccCceEEEEEChhhhccCccccchh---H----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 23346899999999997654321111 1 34445543 234456778888889999999998 99988888876
Q ss_pred CH
Q psy7673 151 NE 152 (541)
Q Consensus 151 ~~ 152 (541)
..
T Consensus 154 ~~ 155 (199)
T 2r2a_A 154 KM 155 (199)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 122
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.70 E-value=2.9e-08 Score=113.57 Aligned_cols=113 Identities=27% Similarity=0.362 Sum_probs=86.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccc------------ccccCc----hHHHHHHHHHHHHhcC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELL------------NMYLGE----SERAVRQCFQRARNSQ 74 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~------------~~~~~~----~~~~~~~~~~~~~~~~ 74 (541)
.++.+|+|||||||||+++++++.+. +-+.++|+..+.. .++.++ .++.++.++..++...
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~ 1160 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1160 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcC
Confidence 34449999999999999999998866 6678888877644 334455 7889999998898889
Q ss_pred CceEEEcCCccccCCCC---CCCC--CChhHHHHHHHHHHhcCCCCCCCeEEEEecC
Q psy7673 75 PCVIFFDEIDALCPKRS---SLGD--NNSSMRIVNQLLTEMDGFEGRGGVFLMAATN 126 (541)
Q Consensus 75 ~~il~iDe~d~l~~~~~---~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~ 126 (541)
|++|++|+++.|++.+. ..++ .....+.++.++..++......+++||+|.+
T Consensus 1161 ~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n~ 1217 (1706)
T 3cmw_A 1161 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1217 (1706)
T ss_dssp CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEecc
Confidence 99999999999999832 2122 2345667888888888766667788885554
No 123
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.70 E-value=1.5e-08 Score=100.96 Aligned_cols=173 Identities=18% Similarity=0.190 Sum_probs=97.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc-----ccCchHH-------HHHHHHHHHHhcCCce
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM-----YLGESER-------AVRQCFQRARNSQPCV 77 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~-----~~~~~~~-------~~~~~~~~~~~~~~~i 77 (541)
.....++|+|++||||+++++++.... +.+|+.+||..+... .+|.... .....|..+ ..++
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a---~~gt 234 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELA---DGGT 234 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHT---TTSE
T ss_pred CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeC---CCcE
Confidence 345678999999999999999998876 478999999876332 1111000 001123332 3479
Q ss_pred EEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC---------CCCCeEEEEecCCC-------CCCCccccCCCCC
Q psy7673 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE---------GRGGVFLMAATNRP-------DIIDPAVMRPGRF 141 (541)
Q Consensus 78 l~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vi~t~~~~-------~~l~~~l~~~~r~ 141 (541)
|||||++.+.. ..+..|++.++.-. ...++.||++||.. ..+.+.|.. |+
T Consensus 235 lfldei~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl 300 (387)
T 1ny5_A 235 LFLDEIGELSL------------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RL 300 (387)
T ss_dssp EEEESGGGCCH------------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HH
T ss_pred EEEcChhhCCH------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hh
Confidence 99999999843 34556666665311 11357899999853 123333332 33
Q ss_pred CeEEEecCCCHH----HHHHHHHHHHhcC----CCCCCCCCCCHHHHHh-hhhcCCCCHHHHHHHHHHHHHHH
Q psy7673 142 DRILFVNLPNEQ----DRKEILLALTKQG----KDPMMGEDVDFDKIAA-DERCEGFSGADLEQLVKEAREQA 205 (541)
Q Consensus 142 ~~~i~~~~p~~~----~r~~il~~~~~~~----~~~~~~~~~~~~~l~~-~~~~~g~~~~dl~~l~~~a~~~a 205 (541)
. .+.+..|... +...++++++... +.. ...++.+.+.. ....---+.++|+++++++...+
T Consensus 301 ~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 301 G-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKE--VEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp T-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCC--CCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred c-CCeecCCcchhccccHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 2 3445555554 4444555555432 211 11233332221 12221124578888888886544
No 124
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.70 E-value=6.5e-07 Score=88.23 Aligned_cols=165 Identities=14% Similarity=0.121 Sum_probs=98.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc-----c--cccCc------------------------------
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL-----N--MYLGE------------------------------ 58 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~-----~--~~~~~------------------------------ 58 (541)
..++|+||+|+|||++++.++++.+..++++++.... + .....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 5899999999999999999999987778888876430 0 00000
Q ss_pred ---------hHHHHHHHHHHHHhc--CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 59 ---------SERAVRQCFQRARNS--QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 59 ---------~~~~~~~~~~~~~~~--~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
....+..++...... +|.+|+|||+|.+.... .......+..+... ..++.+|.|++.
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-----~~~~~~~l~~~~~~------~~~~~~i~~g~~ 179 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR-----GVNLLPALAYAYDN------LKRIKFIMSGSE 179 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-----TCCCHHHHHHHHHH------CTTEEEEEEESS
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-----chhHHHHHHHHHHc------CCCeEEEEEcCc
Confidence 001233344443332 37899999999986421 01112223333222 124566666654
Q ss_pred CC---------CCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHH
Q psy7673 128 PD---------IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLV 198 (541)
Q Consensus 128 ~~---------~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~ 198 (541)
.. .....+. +|+...+.+.+.+.++..++++..+..... . .+ +...+. ..+.|+ |.-+..++
T Consensus 180 ~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~-~~--~~~~i~--~~t~G~-P~~l~~~~ 250 (357)
T 2fna_A 180 MGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEAIEFLRRGFQEADI-D-FK--DYEVVY--EKIGGI-PGWLTYFG 250 (357)
T ss_dssp HHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHHHHHHHHHHHHHTC-C-CC--CHHHHH--HHHCSC-HHHHHHHH
T ss_pred hHHHHHHHhccCCCCccc--cCccceeecCCCCHHHHHHHHHHHHHHcCC-C-CC--cHHHHH--HHhCCC-HHHHHHHH
Confidence 21 1112232 266678999999999999999987753211 1 11 235555 678884 66666665
Q ss_pred HH
Q psy7673 199 KE 200 (541)
Q Consensus 199 ~~ 200 (541)
..
T Consensus 251 ~~ 252 (357)
T 2fna_A 251 FI 252 (357)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 125
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.67 E-value=5.8e-07 Score=88.37 Aligned_cols=168 Identities=17% Similarity=0.131 Sum_probs=95.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc------c---------ccc------------------------
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL------N---------MYL------------------------ 56 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~------~---------~~~------------------------ 56 (541)
..++|+||+|+|||++++.++++.+ +++++|.... . ...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 6899999999999999999999875 7788875431 0 000
Q ss_pred -CchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC------
Q psy7673 57 -GESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD------ 129 (541)
Q Consensus 57 -~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~------ 129 (541)
......+..+...+...+|.+|+|||+|.+..... .........|...++.. .++.+|.|+....
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-----~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l 181 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-----RGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFL 181 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----TTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----cchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHH
Confidence 01111122222222222478999999999854100 01122333333333321 3455666654321
Q ss_pred ---CCCccccCCCCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHH
Q psy7673 130 ---IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKE 200 (541)
Q Consensus 130 ---~l~~~l~~~~r~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~ 200 (541)
.....+. +|+...+.+.+.+.++..++++..+...+.. .+......+. ..+.|+ |.-+..++..
T Consensus 182 ~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~--~~tgG~-P~~l~~~~~~ 248 (350)
T 2qen_A 182 KITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAV--ELLDGI-PGWLVVFGVE 248 (350)
T ss_dssp CTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHH--HHHTTC-HHHHHHHHHH
T ss_pred hhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH--HHhCCC-HHHHHHHHHH
Confidence 1122232 2666789999999999999999887643211 1112234444 567784 6666665543
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.65 E-value=1.9e-08 Score=90.73 Aligned_cols=71 Identities=27% Similarity=0.385 Sum_probs=48.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchH-HHHHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESE-RAVRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
+.+++|+||+|||||++++++++.+ +.+++.+++.++......... ..+...+..... +.+|+|||++...
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 3899999999999999999999988 678888998776543211100 001222333332 3699999997653
No 127
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.64 E-value=1.5e-08 Score=76.30 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHH
Q psy7673 153 QDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFR 232 (541)
Q Consensus 153 ~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~ 232 (541)
++|.+||+.++++. .+.+++|+..++ +.|+|||+.||.++|+.|...|+.+.. ..|+.+
T Consensus 1 ~~R~~Il~~~l~~~---~~~~~vdl~~lA--~~t~G~SGADi~~l~~eAa~~ai~~~~----------------~~i~~~ 59 (82)
T 2dzn_B 1 MERRLIFGTIASKM---SLAPEADLDSLI--IRNDSLSGAVIAAIMQEAGLRAVRKNR----------------YVILQS 59 (82)
T ss_dssp -------------C---EECTTCCSTTTT--TSSCCCCHHHHHHHHHHHHHHHHHTTC----------------SEECHH
T ss_pred CHHHHHHHHHHcCC---CCCCcCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhcc----------------CCcCHH
Confidence 46889999988864 235678999999 999999999999999999999987632 359999
Q ss_pred HHHHHHHhcC-CCCChh
Q psy7673 233 HFDIALKRIK-PSVSKA 248 (541)
Q Consensus 233 d~~~al~~~~-~~~s~~ 248 (541)
||.+|++.+. ++.+.+
T Consensus 60 df~~Al~~v~~~~~~~~ 76 (82)
T 2dzn_B 60 DLEEAYATQVKTDNTVD 76 (82)
T ss_dssp HHHHHHHTTCC------
T ss_pred HHHHHHHHHHcCcCChH
Confidence 9999999984 555443
No 128
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.63 E-value=2.5e-08 Score=98.69 Aligned_cols=192 Identities=18% Similarity=0.172 Sum_probs=110.1
Q ss_pred cEEEEEcCCCCcHHHHHHHH-HHHhCCcEEEEeC--c---cccccccCchHHHH-HHHHHHHHhcCCceEEEcCCccccC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAV-ANEAGINFISVKG--P---ELLNMYLGESERAV-RQCFQRARNSQPCVIFFDEIDALCP 88 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~-a~~~~~~~~~i~~--~---~l~~~~~~~~~~~~-~~~~~~~~~~~~~il~iDe~d~l~~ 88 (541)
.++||.|+||| ||++++++ ++.+.... +... + .+.....+.+...+ ...+.. ...++++|||++.+.+
T Consensus 240 ihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~L---AdgGvl~lDEIn~~~~ 314 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKEDRGWALRAGAAVL---ADGGILAVDHLEGAPE 314 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEESSSEEEEECHHHH---TTTSEEEEECCTTCCH
T ss_pred eeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEcCCCcccCCCeeEE---cCCCeeehHhhhhCCH
Confidence 37999999999 99999999 66554433 2221 0 11111000000000 001111 2237999999998743
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCC-------CCCCCeEEEEecCCCC-----------CCCccccCCCCCCeEEE-ecC
Q psy7673 89 KRSSLGDNNSSMRIVNQLLTEMDGF-------EGRGGVFLMAATNRPD-----------IIDPAVMRPGRFDRILF-VNL 149 (541)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~vi~t~~~~~-----------~l~~~l~~~~r~~~~i~-~~~ 149 (541)
..+..|++.|++- .-+.++.||||+|..+ .|++++++ ||+..+. +..
T Consensus 315 ------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~ 380 (506)
T 3f8t_A 315 ------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVD 380 (506)
T ss_dssp ------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-
T ss_pred ------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCC
Confidence 4556777776632 1134589999999764 78889998 9985443 445
Q ss_pred CCHHH-------------HHHHHHHHHh-cCCCCCCCCCCCHHHHH----hhh-----------hcCCCCHHHHHHHHHH
Q psy7673 150 PNEQD-------------RKEILLALTK-QGKDPMMGEDVDFDKIA----ADE-----------RCEGFSGADLEQLVKE 200 (541)
Q Consensus 150 p~~~~-------------r~~il~~~~~-~~~~~~~~~~~~~~~l~----~~~-----------~~~g~~~~dl~~l~~~ 200 (541)
|+.++ ..+++. +++ ....+.+.+++ .+.+. ..+ ...|.|+|.+..|++-
T Consensus 381 pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea-~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRl 458 (506)
T 3f8t_A 381 PRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEA-RKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERL 458 (506)
T ss_dssp -------------CCHHHHHHHHH-HHHHHCSCCEECHHH-HHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHH
T ss_pred CChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHH-HHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHH
Confidence 54432 222222 222 11112222211 11111 000 2457899999999999
Q ss_pred HHHHHHHHHhhcccCCCcCCCCCccccccCHHHHHHHHHhcCCC
Q psy7673 201 AREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKRIKPS 244 (541)
Q Consensus 201 a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 244 (541)
|...|..+.++. ++.+|+.+|+.-+..+
T Consensus 459 A~A~A~L~gR~~----------------V~~eDV~~Ai~L~~~S 486 (506)
T 3f8t_A 459 AKAHARMRLSDD----------------VEPEDVDIAAELVDWY 486 (506)
T ss_dssp HHHHHHHTTCSE----------------ECHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCC----------------CCHHHHHHHHHHHHHH
Confidence 999999887765 9999999999877443
No 129
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.54 E-value=5.2e-08 Score=96.24 Aligned_cols=173 Identities=17% Similarity=0.255 Sum_probs=95.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEeCccccccc-----cCchH-------HHHHHHHHHHHhcCCceEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGIN--FISVKGPELLNMY-----LGESE-------RAVRQCFQRARNSQPCVIF 79 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~--~~~i~~~~l~~~~-----~~~~~-------~~~~~~~~~~~~~~~~il~ 79 (541)
....++++|++||||+.+++++....+.. ++.+||..+.... +|... ......|..+ ..++||
T Consensus 151 ~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a---~~gtlf 227 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELA---DQGTLF 227 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHT---TTSEEE
T ss_pred cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhc---CCCeEE
Confidence 34569999999999999999999877433 9999998763221 11000 0001123332 347999
Q ss_pred EcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCC-----C----CCCeEEEEecCCC-------CCCCccccCCCCCC-
Q psy7673 80 FDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFE-----G----RGGVFLMAATNRP-------DIIDPAVMRPGRFD- 142 (541)
Q Consensus 80 iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~----~~~~~vi~t~~~~-------~~l~~~l~~~~r~~- 142 (541)
|||++.+.. ..+..|+..++.-. . ..++.+|++||.. ..+.+.|.. |+.
T Consensus 228 ldei~~l~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~ 293 (368)
T 3dzd_A 228 LDEVGELDQ------------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSV 293 (368)
T ss_dssp EETGGGSCH------------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTS
T ss_pred ecChhhCCH------------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCC
Confidence 999999843 35567777765321 1 1247789988843 123333433 443
Q ss_pred eEEEecCCCH--HHHHHHHHHHHhcCCCC--CCCCCCCHHHHHh-hhhc-CCCCHHHHHHHHHHHHHH
Q psy7673 143 RILFVNLPNE--QDRKEILLALTKQGKDP--MMGEDVDFDKIAA-DERC-EGFSGADLEQLVKEAREQ 204 (541)
Q Consensus 143 ~~i~~~~p~~--~~r~~il~~~~~~~~~~--~~~~~~~~~~l~~-~~~~-~g~~~~dl~~l~~~a~~~ 204 (541)
..|.+++..+ ++...++++++...... .....++.+.+.. .... .| +.++|+++++++...
T Consensus 294 ~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpG-NvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 294 FQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKG-NVRELKNLIERAVIL 360 (368)
T ss_dssp EEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTT-HHHHHHHHHHHHHHT
T ss_pred eEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCc-HHHHHHHHHHHHHHh
Confidence 2355554443 45556666665542110 1111233222221 0222 23 457777777777543
No 130
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.53 E-value=4.3e-07 Score=108.71 Aligned_cols=135 Identities=16% Similarity=0.187 Sum_probs=94.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSS 92 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~ 92 (541)
....+.++.||+|||||++++++|+.+|.+++.++|++-.. ...+..+|..+...+ +.+++||++.+.+..
T Consensus 643 ~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~ev-- 713 (2695)
T 4akg_A 643 HQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKV-- 713 (2695)
T ss_dssp HTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHH--
T ss_pred HhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHH--
Confidence 35578899999999999999999999999999999987543 244566776666544 799999999874321
Q ss_pred CCCCChhHHHHHHHHHHhcC-----------CCCCCCeEEEEecCC----CCCCCccccCCCCCCeEEEecCCCHHHHHH
Q psy7673 93 LGDNNSSMRIVNQLLTEMDG-----------FEGRGGVFLMAATNR----PDIIDPAVMRPGRFDRILFVNLPNEQDRKE 157 (541)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~-----------~~~~~~~~vi~t~~~----~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 157 (541)
.+...+.+..+...+.+ +.-+.++.|++|.|+ ...+++.+++ || +.+.+..|+.+...+
T Consensus 714 ---Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~e 787 (2695)
T 4akg_A 714 ---LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAE 787 (2695)
T ss_dssp ---HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHH
Confidence 00111111222222211 112345678888883 3479999998 88 589999999999888
Q ss_pred HHHHH
Q psy7673 158 ILLAL 162 (541)
Q Consensus 158 il~~~ 162 (541)
|+-..
T Consensus 788 i~l~s 792 (2695)
T 4akg_A 788 MILQI 792 (2695)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 86443
No 131
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=98.48 E-value=2.6e-06 Score=86.92 Aligned_cols=193 Identities=11% Similarity=-0.017 Sum_probs=112.5
Q ss_pred cccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEe--CCcE-EEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHh
Q psy7673 297 SVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFL--EKGV-KVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGN 372 (541)
Q Consensus 297 ~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~--~~~~-~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~ 372 (541)
.+.||++.++++|++.+ ..|++|+++++|++|..+ ++++ .|.+ +|+++.||+||+|++++. .++
T Consensus 236 ~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~-~~l---------- 303 (453)
T 2bcg_G 236 YPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFP-EKC---------- 303 (453)
T ss_dssp EETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCG-GGE----------
T ss_pred eeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccc-hhh----------
Confidence 78999999999999988 568899999999999987 6665 4555 577899999999998862 111
Q ss_pred hhcCCCCccEEEEEEeeCCCCC---CCCccEEEecCCC--CCCceEEEeeccc--ccCCCcEEEEEEecCccCCcccCCC
Q psy7673 373 LLSSIEHVNVAVINLAYENIPM---KQNAFGFLVPPRE--KLPILGVVFDSCC--FEQADWTILTVMMGGAWYDTYFKGQ 445 (541)
Q Consensus 373 ~l~~~~~~~~~~v~l~~~~~~~---~~~~~g~l~~~~~--~~~~~~~~~~s~~--~~~~~~~~l~~~~~g~~~~~~~~~~ 445 (541)
.+..- ......+.++++.. ....+..+++... ..+..-+...|.. ..+.|...+.+++.... .
T Consensus 304 --~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~v~~~s~~d~~aP~G~~~~~v~~~~~~-------~ 373 (453)
T 2bcg_G 304 --KSTGQ-RVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIET-------D 373 (453)
T ss_dssp --EEEEE-EEEEEEEEESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGGTSSCTTCEEEEEEEECCS-------S
T ss_pred --cccCC-cceeEEEEEccccCCCCCCccEEEEeCccccCCCCCEEEEEeCCCCCCCCCCcEEEEEEEecCC-------C
Confidence 11110 22222233655322 1123334444321 1222233333322 23456677777774321 2
Q ss_pred CHHHHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHH
Q psy7673 446 SKEYILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSK 525 (541)
Q Consensus 446 ~~e~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~ 525 (541)
+.++-++.+++. ++.. .-....+..+. .+-. .....++|+||++.....+++|+.+++
T Consensus 374 ~~~~~l~~~~~~----l~~~-~~~~~~~~~~~------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (453)
T 2bcg_G 374 KPHIELEPAFKL----LGPI-EEKFMGIAELF------EPRE-----------DGSKDNIYLSRSYDASSHFESMTDDVK 431 (453)
T ss_dssp CHHHHTHHHHGG----GCSC-SEEEEEEEEEE------EESS-----------CSTTTSEEECCCCCSCSBSHHHHHHHH
T ss_pred CHHHHHHHHHHH----hhhH-HHhhccchhee------eecC-----------CCCCCCEEECCCCCccccHHHHHHHHH
Confidence 233333333333 3311 11112222221 1110 012358999999998888999999999
Q ss_pred HHHHHHhh
Q psy7673 526 KAVESIKW 533 (541)
Q Consensus 526 ~aa~~i~~ 533 (541)
+++++|..
T Consensus 432 ~~~~~~~g 439 (453)
T 2bcg_G 432 DIYFRVTG 439 (453)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHC
Confidence 99999963
No 132
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.48 E-value=1.7e-07 Score=90.12 Aligned_cols=72 Identities=24% Similarity=0.321 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCccccccccCch-HHHHHHHHHHHHhcCCceEEEcCCcccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGPELLNMYLGES-ERAVRQCFQRARNSQPCVIFFDEIDALC 87 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~il~iDe~d~l~ 87 (541)
.+.+++|+||+|||||++++++++++ +.+++++++.++........ ...+...+.... .+.+|+|||++...
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 36899999999999999999999866 47888898877654322110 111112222222 34699999997653
No 133
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=98.40 E-value=1.4e-05 Score=75.45 Aligned_cols=222 Identities=16% Similarity=0.179 Sum_probs=118.1
Q ss_pred ccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCce-eEeeCEEEEcCChhHHHhhhcccCchhHhhhcC
Q psy7673 298 VEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQ-HIEANHVVSALPAPKLGMLLHKQHPTLGNLLSS 376 (541)
Q Consensus 298 ~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~-~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~~ 376 (541)
...++........... .+.............+.+.+....+. ......++.+............ ..........
T Consensus 105 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 179 (336)
T 3kkj_A 105 GKPGMSAITRAMRGDM----PVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAA-APKLASVVAG 179 (336)
T ss_dssp ESSSTHHHHHHHHTTC----CEECSCCEEEEEECSSCEEEEETTSCEEEEESCEEECSCHHHHGGGGTT-CHHHHHHHTT
T ss_pred cccccccchhcccccc----eeecceeecccccccccccccccccccccccccceeccccchhhhhhcc-cccccccccc
Confidence 3444444444444433 46666666666666666666655543 3344556666655554444322 2222333334
Q ss_pred CCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeeccccc-CCCcEEEEEEecCccCCcccCCCCHHHHHHHHH
Q psy7673 377 IEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFE-QADWTILTVMMGGAWYDTYFKGQSKEYILDIAC 455 (541)
Q Consensus 377 ~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~-~~~~~~l~~~~~g~~~~~~~~~~~~e~~~~~~~ 455 (541)
............+.............. ............... ..................... .......+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 254 (336)
T 3kkj_A 180 VKMDPTWAVALAFETPLQTPMQGCFVQ----DSPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLD-ASREQVIEHLH 254 (336)
T ss_dssp CCEEEEEEEEEEESSCCSCCCCEEEEC----SSSEEEEEEGGGSTTCCCSSEEEEEEECHHHHHHTTT-SCHHHHHHHHH
T ss_pred cccccchhhhhcccccccccccccccc----ccccccccccccccccccccccceecccccccccccc-ccchhhhhhhh
Confidence 444445555555443222221111111 011111111111111 112222223222222222222 45667777777
Q ss_pred HHHHhHcCCC-CCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHHHHHHhhh
Q psy7673 456 RYVHEILDMP-RTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAVESIKWQ 534 (541)
Q Consensus 456 ~~l~~~~g~~-~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~aa~~i~~~ 534 (541)
..+...++.. ..+....+++|+++.|....... ...+..+||++||||+.|.++++|+.||..||+.| ++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~w~~a~~~~~~~~~--------~~~~~~~~v~l~GDa~~g~gv~~A~~sG~~aA~~I-~~ 325 (336)
T 3kkj_A 255 GAFAELIDCTMPAPVFSLAHRWLYARPAGAHEWG--------ALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRL-LE 325 (336)
T ss_dssp HHHHTTCSSCCCCCSEEEEEEEEEEEESSCCCCS--------SEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHHH-HH
T ss_pred hhhhhhccCCcCcchheeccceeecccccccCcc--------ceeeCCCCEEEEecccCCcCHHHHHHHHHHHHHHH-HH
Confidence 7777777654 56888999999987765444321 11234569999999999999999999999999999 55
Q ss_pred hccc
Q psy7673 535 HWGA 538 (541)
Q Consensus 535 ~~~~ 538 (541)
+|..
T Consensus 326 ~L~~ 329 (336)
T 3kkj_A 326 HLQL 329 (336)
T ss_dssp HTTC
T ss_pred Hhhc
Confidence 5653
No 134
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.36 E-value=6.6e-07 Score=78.72 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=28.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFI 44 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~ 44 (541)
+.+..+++||+||||||||+++.++++.+...++
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 4444568999999999999999999999866544
No 135
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.35 E-value=1e-06 Score=102.12 Aligned_cols=116 Identities=25% Similarity=0.339 Sum_probs=80.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc----------------cCchHHHHHHHHHHHHh
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY----------------LGESERAVRQCFQRARN 72 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~----------------~~~~~~~~~~~~~~~~~ 72 (541)
..++.+++|+||||||||+++.+++.+. +..+.++++.+..... ....+..+..++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 7789999999999999999999998766 6788888877543211 12334566666667777
Q ss_pred cCCceEEEcCCccccCCC---CCCCCCCh--hHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 73 SQPCVIFFDEIDALCPKR---SSLGDNNS--SMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 73 ~~~~il~iDe~d~l~~~~---~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
.+|++|+||+++.+.+.. ...++... ..+++..++..|.......+++||.|...
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1563 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccc
Confidence 889999999999888742 11122222 34566666666665555566677777553
No 136
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.28 E-value=4e-08 Score=80.11 Aligned_cols=103 Identities=5% Similarity=-0.115 Sum_probs=63.2
Q ss_pred eeEeeCEEEEcCChhHHHhhh--cccCchhHhhhcCCCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeeccc
Q psy7673 343 QHIEANHVVSALPAPKLGMLL--HKQHPTLGNLLSSIEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCC 420 (541)
Q Consensus 343 ~~~~ad~VI~t~P~~~~~~ll--~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~ 420 (541)
++++||+||+|+|+++++++. |++++...++++++.|++..|+++.|++++|...+..+ +.+.
T Consensus 4 ~~~~Ad~VIvTvP~~vL~~I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~~~~g---------------d~s~ 68 (130)
T 2e1m_B 4 QTWTGDLAIVTIPFSSLRFVKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFTEADW---------------KREL 68 (130)
T ss_dssp EEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGCCHHHH---------------HHHH
T ss_pred eEEEcCEEEEcCCHHHHhcCcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCCCCccc---------------cccC
Confidence 468999999999999999874 67888888999999999999999999999998654311 1111
Q ss_pred ccCCCcEEEEEEec-CccCCcccCCCCHHHHHHHHHHHHHhHcC
Q psy7673 421 FEQADWTILTVMMG-GAWYDTYFKGQSKEYILDIACRYVHEILD 463 (541)
Q Consensus 421 ~~~~~~~~l~~~~~-g~~~~~~~~~~~~e~~~~~~~~~l~~~~g 463 (541)
++.+..++..|.+ |..+.++.. +++ +-.+..+..|..+++
T Consensus 69 -~~~~pg~l~~f~~wg~~A~~~~~-l~~-~~r~~~~~~l~~~~p 109 (130)
T 2e1m_B 69 -DAIAPGLYDYYQQWGEDDAEAAL-ALP-QSVRNLPTGLLGAHP 109 (130)
T ss_dssp -HHHSTTHHHHHHHHCCCSCCCC---------------------
T ss_pred -CCCCCeEEEEecccCHHHHHHhc-CCH-HHHHHHHHHHHHhCC
Confidence 1111226677774 777777755 554 667788888888774
No 137
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.27 E-value=5e-06 Score=72.81 Aligned_cols=28 Identities=36% Similarity=0.656 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFI 44 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~ 44 (541)
.+.|.||+|+||||+++.++..++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 5789999999999999999998865443
No 138
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=98.23 E-value=1.4e-05 Score=80.94 Aligned_cols=196 Identities=9% Similarity=-0.020 Sum_probs=112.6
Q ss_pred ccccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHh
Q psy7673 294 SVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGN 372 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~ 372 (541)
+.+.+.+|++.++++|++.+ ..|++|+++++|++|..+++++.+...+|+++.||+||+|+|++.. .+..
T Consensus 225 ~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~--~~~~------- 295 (433)
T 1d5t_A 225 PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD--RVRK------- 295 (433)
T ss_dssp SEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG--GEEE-------
T ss_pred cEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc--cccc-------
Confidence 36788999999999999988 5578999999999999888777644457778999999999988741 2211
Q ss_pred hhcCCCCccEEEEEEeeCCCCCCC---CccEEEecCCC--CCCceEEEeeccc--ccCCCcEEEEEEecCccCCcccCCC
Q psy7673 373 LLSSIEHVNVAVINLAYENIPMKQ---NAFGFLVPPRE--KLPILGVVFDSCC--FEQADWTILTVMMGGAWYDTYFKGQ 445 (541)
Q Consensus 373 ~l~~~~~~~~~~v~l~~~~~~~~~---~~~g~l~~~~~--~~~~~~~~~~s~~--~~~~~~~~l~~~~~g~~~~~~~~~~ 445 (541)
+. .. .-.+. .++++.... .....+++... ..+..-+...|.. ..+.+...++++..... .
T Consensus 296 -~~--~~--~~~~~-il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~d~~~aP~G~~~~~~~~~~p~-------~ 362 (433)
T 1d5t_A 296 -AG--QV--IRIIC-ILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVET-------T 362 (433)
T ss_dssp -EE--EE--EEEEE-EESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGGTSSCTTCEEEEEEEECCS-------S
T ss_pred -cC--cc--eeEEE-EEcCcccccCCCceEEEEeCccccCCCCCEEEEEECCCCcccCCCCEEEEEEEecCC-------C
Confidence 11 11 11222 255432111 23333444221 1233333333311 12456667776664321 1
Q ss_pred CHHHHHHHHHHHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHH
Q psy7673 446 SKEYILDIACRYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSK 525 (541)
Q Consensus 446 ~~e~~~~~~~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~ 525 (541)
+.++-++.+++. ++.. .-....+..+. .+-. .....++|+++++..+...++|+.+++
T Consensus 363 ~~~~~l~~~~~~----l~~~-~~~~~~~~~~~------~~~~-----------~~~~~~~~~~~~~d~~~~~e~~~~~~~ 420 (433)
T 1d5t_A 363 DPEKEVEPALGL----LEPI-DQKFVAISDLY------EPID-----------DGSESQVFCSCSYDATTHFETTCNDIK 420 (433)
T ss_dssp CHHHHTHHHHTT----TCSC-SEEEEEEEEEE------EESC-----------CSTTTCEEECCCCCSCSBSHHHHHHHH
T ss_pred CHHHHHHHHHHH----hhhH-Hhheeccceee------eecC-----------CCCCCCEEECCCCCccccHHHHHHHHH
Confidence 233333333332 2211 00122222221 1110 012358999999998888999999999
Q ss_pred HHHHHHhh
Q psy7673 526 KAVESIKW 533 (541)
Q Consensus 526 ~aa~~i~~ 533 (541)
..-++|..
T Consensus 421 ~~~~~~~~ 428 (433)
T 1d5t_A 421 DIYKRMAG 428 (433)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99888843
No 139
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.17 E-value=4.4e-05 Score=74.67 Aligned_cols=180 Identities=16% Similarity=0.077 Sum_probs=110.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CC-c--EEEEeCccccccccCchHHHHHHHHHHHH----hcCCceEEEc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GI-N--FISVKGPELLNMYLGESERAVRQCFQRAR----NSQPCVIFFD 81 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~-~--~~~i~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~il~iD 81 (541)
.+.+..+||+||.|.||++.++.+++.+ +. + ++.++. . ..++.+++.+. -....|++||
T Consensus 15 ~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~----~~~~~l~~~~~~~plf~~~kvvii~ 83 (343)
T 1jr3_D 15 EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-------N----TDWNAIFSLCQAMSLFASRQTLLLL 83 (343)
T ss_dssp HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-------T----CCHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-------C----CCHHHHHHHhcCcCCccCCeEEEEE
Confidence 3567789999999999999999998865 32 2 222221 0 12233333332 2345799999
Q ss_pred CCcc-ccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC------CCCCccccCCCCCCeEEEecCCCHHH
Q psy7673 82 EIDA-LCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP------DIIDPAVMRPGRFDRILFVNLPNEQD 154 (541)
Q Consensus 82 e~d~-l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~------~~l~~~l~~~~r~~~~i~~~~p~~~~ 154 (541)
|+|. +.. ...+.|+..++... .+.++|.+++.. ..+.+.+.+ |. ..+.|.+++.++
T Consensus 84 ~~~~kl~~------------~~~~aLl~~le~p~--~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~ 146 (343)
T 1jr3_D 84 LPENGPNA------------AINEQLLTLTGLLH--DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQ 146 (343)
T ss_dssp CCSSCCCT------------THHHHHHHHHTTCB--TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTH
T ss_pred CCCCCCCh------------HHHHHHHHHHhcCC--CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHH
Confidence 9998 632 23457778777532 233444444432 345677777 66 589999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCCccccccCHHHH
Q psy7673 155 RKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHF 234 (541)
Q Consensus 155 r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 234 (541)
....++..+...+... +.-....++ ..+.| +.+++.+.++.....+ . ...|+.+++
T Consensus 147 l~~~l~~~~~~~g~~i--~~~a~~~l~--~~~~g-dl~~~~~elekl~l~~-----~--------------~~~It~e~V 202 (343)
T 1jr3_D 147 LPRWVAARAKQLNLEL--DDAANQVLC--YCYEG-NLLALAQALERLSLLW-----P--------------DGKLTLPRV 202 (343)
T ss_dssp HHHHHHHHHHHTTCEE--CHHHHHHHH--HSSTT-CHHHHHHHHHHHHHHC-----T--------------TCEECHHHH
T ss_pred HHHHHHHHHHHcCCCC--CHHHHHHHH--HHhch-HHHHHHHHHHHHHHhc-----C--------------CCCCCHHHH
Confidence 9999999998754211 111233344 33444 5666666666553321 0 024889998
Q ss_pred HHHHHhcCC
Q psy7673 235 DIALKRIKP 243 (541)
Q Consensus 235 ~~al~~~~~ 243 (541)
.+.+.....
T Consensus 203 ~~~~~~~~~ 211 (343)
T 1jr3_D 203 EQAVNDAAH 211 (343)
T ss_dssp HHHHHHHCC
T ss_pred HHHHhhhhc
Confidence 888776543
No 140
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.16 E-value=1.3e-05 Score=77.77 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=68.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc----------------ccCchHHHHHHHHHHHHh
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM----------------YLGESERAVRQCFQRARN 72 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~~~ 72 (541)
..++..++|+||||+|||+++..++..+ +..+++++....... .....+..+..+......
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 4566679999999999999999998775 677888887653211 011122223222222334
Q ss_pred cCCceEEEcCCccccCC-CCC--CCCCC--hhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 73 SQPCVIFFDEIDALCPK-RSS--LGDNN--SSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 73 ~~~~il~iDe~d~l~~~-~~~--~~~~~--~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
..+.+++||.+..+.+. .-. .++.. ...+.+..++..|..+....++.||.+.+-
T Consensus 138 ~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 67899999999998862 111 11111 223444555554444444455666666543
No 141
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.16 E-value=9.5e-06 Score=98.00 Aligned_cols=140 Identities=19% Similarity=0.358 Sum_probs=89.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEeCccccccccCchHHHHHHHHHHH---Hh-------------cCCc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA-GINFISVKGPELLNMYLGESERAVRQCFQRA---RN-------------SQPC 76 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~-~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~---~~-------------~~~~ 76 (541)
....+||+||+|||||++++.+...+ +.+++.++++.-.. ...+...+... ++ .+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 45789999999999998887655544 66778888875432 23333333321 00 1124
Q ss_pred eEEEcCCccccCCCCCCCCCChhHHHHHHHHHHh---cC----CCCCCCeEEEEecCCCC-----CCCccccCCCCCCeE
Q psy7673 77 VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEM---DG----FEGRGGVFLMAATNRPD-----IIDPAVMRPGRFDRI 144 (541)
Q Consensus 77 il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l---~~----~~~~~~~~vi~t~~~~~-----~l~~~l~~~~r~~~~ 144 (541)
|+||||++.-..+.-+ . +....++..+++.- +. ...-.++.+|+|+|.+. .+++.+.| ||. .
T Consensus 1377 VlFiDDiNmp~~D~yG--t-Q~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-v 1450 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYG--T-QRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-I 1450 (3245)
T ss_dssp EEEETTTTCCCCCTTS--C-CHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-E
T ss_pred EEEecccCCCCccccc--c-ccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-E
Confidence 8999999864332211 1 12233333333321 10 01123578999999873 58999998 886 6
Q ss_pred EEecCCCHHHHHHHHHHHHhc
Q psy7673 145 LFVNLPNEQDRKEILLALTKQ 165 (541)
Q Consensus 145 i~~~~p~~~~r~~il~~~~~~ 165 (541)
+.++.|+.++...|+..++..
T Consensus 1451 i~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999998877664
No 142
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.14 E-value=1.5e-05 Score=96.37 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=89.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSL 93 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~ 93 (541)
...+..+.||+|||||.+++.+|+.+|..++.++|++-.. ...+..+|..+...+ +-.++|||+.+-.
T Consensus 603 ~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~G-aW~cfDEfNrl~~----- 670 (3245)
T 3vkg_A 603 SRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQCG-AWGCFDEFNRLEE----- 670 (3245)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCH-----
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhcC-cEEEehhhhcCCH-----
Confidence 4456689999999999999999999999999999986543 245566676665543 7889999999732
Q ss_pred CCCChhHHHHHHHHHHhc-----------------C--CCCCCCeEEEEecCC----CCCCCccccCCCCCCeEEEecCC
Q psy7673 94 GDNNSSMRIVNQLLTEMD-----------------G--FEGRGGVFLMAATNR----PDIIDPAVMRPGRFDRILFVNLP 150 (541)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~-----------------~--~~~~~~~~vi~t~~~----~~~l~~~l~~~~r~~~~i~~~~p 150 (541)
.+++.+...+. + +.-+.+..|++|.|+ ...+|+.+++ || +.+.+..|
T Consensus 671 -------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~P 740 (3245)
T 3vkg_A 671 -------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKP 740 (3245)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSC
T ss_pred -------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCC
Confidence 12222222111 1 112345678888884 3579999998 88 57999999
Q ss_pred CHHHHHHHH
Q psy7673 151 NEQDRKEIL 159 (541)
Q Consensus 151 ~~~~r~~il 159 (541)
+.+...+|+
T Consensus 741 d~~~i~ei~ 749 (3245)
T 3vkg_A 741 DREMIAQVM 749 (3245)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 998888876
No 143
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.10 E-value=3.1e-06 Score=83.15 Aligned_cols=119 Identities=17% Similarity=0.203 Sum_probs=73.0
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCC
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPK 89 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~ 89 (541)
++.+++..++|+||+|+||||+++.++..++..++.++..+- .....+. ...+..++++||++.+...
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg------~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELG------VAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHG------GGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHH------HhcchhHHHHHHHHHHHHH
Confidence 478888999999999999999999999988776654332210 0011111 1123467899999988752
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCeEEEe
Q psy7673 90 RSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFV 147 (541)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~~i~~ 147 (541)
.......... .....+...+++ .+.|+.++|.++.+ +.+.++++++..+..
T Consensus 232 ~r~l~~~~~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 232 SRDLPSGQGI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp TTTCCCCSHH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred HhhccccCcc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 1111111110 012333444443 34678889999888 678777777654443
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.07 E-value=2.1e-05 Score=72.14 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=64.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc--------------c------------------
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM--------------Y------------------ 55 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~--------------~------------------ 55 (541)
|..++..++|.||+|+|||++++.++... +..+++++....... .
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 46677789999999999999999998654 566777764321000 0
Q ss_pred ----cCchHHHHHHHHHHHHhcCCc--eEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy7673 56 ----LGESERAVRQCFQRARNSQPC--VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP 128 (541)
Q Consensus 56 ----~~~~~~~~~~~~~~~~~~~~~--il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~ 128 (541)
..........+...+...+|. +|+|||+..+... +......++..|..... ..++.||.+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~-----d~~~~~~~~~~l~~~~~----~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD-----KPAMARKISYYLKRVLN----KWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS-----CGGGHHHHHHHHHHHHH----HTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC-----CHHHHHHHHHHHHHHHH----hCCCeEEEEeccC
Confidence 001122233334444456788 9999999987532 11223344444443322 2346777777754
No 145
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=98.07 E-value=3.7e-05 Score=76.24 Aligned_cols=170 Identities=11% Similarity=0.049 Sum_probs=113.2
Q ss_pred cccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhhhcC
Q psy7673 297 SVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNLLSS 376 (541)
Q Consensus 297 ~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~~ 376 (541)
.+.+|+.++.++|++.. |++|++|++|.++ +..+.+|+||+|+|++.+.. ..+.+
T Consensus 217 ~P~gGy~~l~e~l~~~~--g~~V~l~~~v~~~-------------~~~~~~d~vI~T~P~d~~~~----------~~~g~ 271 (397)
T 3hdq_A 217 MPLHGYTRMFQNMLSSP--NIKVMLNTDYREI-------------ADFIPFQHMIYTGPVDAFFD----------FCYGK 271 (397)
T ss_dssp EETTCHHHHHHHHTCST--TEEEEESCCGGGT-------------TTTSCEEEEEECSCHHHHTT----------TTTCC
T ss_pred ccCCCHHHHHHHHHhcc--CCEEEECCeEEec-------------cccccCCEEEEcCCHHHHHH----------HhcCC
Confidence 47999999999998754 6799999999844 33467999999999987732 13668
Q ss_pred CCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccC-CCcEEEEEEecCccCCcccCCCCHHHHHHHHH
Q psy7673 377 IEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQ-ADWTILTVMMGGAWYDTYFKGQSKEYILDIAC 455 (541)
Q Consensus 377 ~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~e~~~~~~~ 455 (541)
+.|.+...+.+.++........ ++.-.+.+ ++..++..++.... .+.++++.-+.. ..
T Consensus 272 L~yrsl~~~~~~~~~~~~~~~~--~vn~~d~~-p~tRi~e~k~~~~~~~~~t~i~~Ey~~---~~--------------- 330 (397)
T 3hdq_A 272 LPYRSLEFRHETHDTEQLLPTG--TVNYPNDY-AYTRVSEFKHITGQRHHQTSVVYEYPR---AE--------------- 330 (397)
T ss_dssp CCEEEEEEEEEEESSSCSCSSS--EEECSSSS-SCSEEEEHHHHHCCCCSSEEEEEEEEE---SS---------------
T ss_pred CCCceEEEEEEEeccccCCCCe--EEEeCCCC-cceEEEeecccCCCCCCCEEEEEEECC---CC---------------
Confidence 8999999999999865544433 33333444 77667665554222 245666665521 00
Q ss_pred HHHHhHcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCC--CCCChHHHHHHHHHHHHHHhh
Q psy7673 456 RYVHEILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSY--DGVGVNDVIALSKKAVESIKW 533 (541)
Q Consensus 456 ~~l~~~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~--~g~~v~~ai~sg~~aa~~i~~ 533 (541)
.+| -+|.++......+....+... ..++|+++|-.- ..-.|..+|.+|..++++++.
T Consensus 331 ----------~~p----------yYpv~~~~~~~~~~~y~~~a~-~~~~v~~~GRlg~y~Y~~md~~i~~al~~~~~~~~ 389 (397)
T 3hdq_A 331 ----------GDP----------YYPVPRPENAELYKKYEALAD-AAQDVTFVGRLATYRYYNMDQVVAQALATFRRLQG 389 (397)
T ss_dssp ----------SSC----------CEECCSHHHHHHHHHHHHHHH-HCTTEEECSTTTTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ----------Ccc----------ccccCchhHHHHHHHHHHHHh-cCCCEEEcccceEEEeccHHHHHHHHHHHHHHHhc
Confidence 011 044455444444444433222 346999999765 457899999999999998854
No 146
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.06 E-value=1.9e-05 Score=72.87 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=68.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSS 92 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~ 92 (541)
++.++++|+||||||||++++++|+.+.. .-.++.++ .. ..+..+ ....|+++||.......
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~---~~---------f~l~~~--~~k~i~l~Ee~~~~~d~--- 163 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN---EN---------FPFNDC--VDKMVIWWEEGKMTAKV--- 163 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC---SS---------CTTGGG--SSCSEEEECSCCEETTT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc---cc---------cccccc--cccEEEEeccccchhHH---
Confidence 33567999999999999999999998654 22223211 00 011111 22356777776654211
Q ss_pred CCCCChhHHHHHHHHHHhcCC--------C---CCCCeEEEEecCC-CC----------CCCccccCCCCCCeEEEec--
Q psy7673 93 LGDNNSSMRIVNQLLTEMDGF--------E---GRGGVFLMAATNR-PD----------IIDPAVMRPGRFDRILFVN-- 148 (541)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~--------~---~~~~~~vi~t~~~-~~----------~l~~~l~~~~r~~~~i~~~-- 148 (541)
...+...+++. . .-....+|.|||. +. ...+.|++ |+ ..|.|.
T Consensus 164 ----------~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~ 230 (267)
T 1u0j_A 164 ----------VESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRR 230 (267)
T ss_dssp ----------HHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSC
T ss_pred ----------HHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCc
Confidence 11223333311 1 0123466667764 21 34466777 76 477777
Q ss_pred ------CCCHHHHHHHHHHH
Q psy7673 149 ------LPNEQDRKEILLAL 162 (541)
Q Consensus 149 ------~p~~~~r~~il~~~ 162 (541)
..+.++-...++..
T Consensus 231 ~p~~~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 231 LDHDFGKVTKQEVKDFFRWA 250 (267)
T ss_dssp CCTTSCCCCHHHHHHHHHHH
T ss_pred CCcccCCCCHHHHHHHHHHH
Confidence 67888888988855
No 147
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.06 E-value=1.9e-05 Score=77.32 Aligned_cols=116 Identities=22% Similarity=0.302 Sum_probs=67.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc----------------cCchHHHHHHHHHHH-
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY----------------LGESERAVRQCFQRA- 70 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~----------------~~~~~~~~~~~~~~~- 70 (541)
|.+++..++|+|+||+|||+++..++... +.++++++...-.... ....+..+ ..+...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l-~~l~~l~ 148 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQAL-EIMELLV 148 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH-HHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHH-HHHHHHH
Confidence 35667789999999999999999998765 6788889875422110 01112222 223322
Q ss_pred HhcCCceEEEcCCccccCCCCCC---CCC--ChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 71 RNSQPCVIFFDEIDALCPKRSSL---GDN--NSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 71 ~~~~~~il~iDe~d~l~~~~~~~---~~~--~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
....+++|+||.+..+.+..... ++. ....+.+..++..|..+....++.||++.+.
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 34567999999999998532110 010 0122334444444443333455677777553
No 148
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.00 E-value=1.8e-05 Score=71.90 Aligned_cols=40 Identities=25% Similarity=0.202 Sum_probs=34.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPE 50 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~ 50 (541)
|..++..++|+||+|+|||++++.++...+..+++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4677778999999999999999999986678888888754
No 149
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.93 E-value=2.5e-05 Score=72.19 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=51.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCcccccc--------ccC----------------
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLNM--------YLG---------------- 57 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~~--------~~~---------------- 57 (541)
|..++..++|+||+|+|||++++.++... +..+++++....... ..+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 46677789999999999999999999852 456888886552100 000
Q ss_pred chH---HHHHHHHHHHHhcCCceEEEcCCccccCC
Q psy7673 58 ESE---RAVRQCFQRARNSQPCVIFFDEIDALCPK 89 (541)
Q Consensus 58 ~~~---~~~~~~~~~~~~~~~~il~iDe~d~l~~~ 89 (541)
... ..+..+...+....|.+|+||++..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 011 11222333344467899999999988643
No 150
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.93 E-value=2.7e-05 Score=75.93 Aligned_cols=78 Identities=24% Similarity=0.277 Sum_probs=51.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc----c------------CchHHHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY----L------------GESERAVRQCFQRAR 71 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~----~------------~~~~~~~~~~~~~~~ 71 (541)
|..++..++|+||||+|||+++..++... +..+++++...-.... . ...+..+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 34566779999999999999999998665 6778888865422110 0 112222222222233
Q ss_pred hcCCceEEEcCCccccC
Q psy7673 72 NSQPCVIFFDEIDALCP 88 (541)
Q Consensus 72 ~~~~~il~iDe~d~l~~ 88 (541)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 45689999999999974
No 151
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.90 E-value=3.6e-05 Score=72.56 Aligned_cols=111 Identities=11% Similarity=0.149 Sum_probs=61.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeCcccccc----------------ccCchHHHHHHHHHHH---Hh
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA-----GINFISVKGPELLNM----------------YLGESERAVRQCFQRA---RN 72 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~---~~ 72 (541)
.++|+||||+|||+++..++... +..+++++..+-... .....+...-.+.+.+ ..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 57899999999999988886554 577899987643211 0111222202222232 45
Q ss_pred cCCceEEEcCCccccCCCCCC---CCC----ChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 73 SQPCVIFFDEIDALCPKRSSL---GDN----NSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 73 ~~~~il~iDe~d~l~~~~~~~---~~~----~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
..|.+|+||-+..+.+...-. ++. ....+.+...+..|..+.+..++.+|.+.+-
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 578999999999998542111 110 0223344444443333333455666666553
No 152
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.90 E-value=2.2e-05 Score=76.63 Aligned_cols=78 Identities=26% Similarity=0.309 Sum_probs=52.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc----c-----------CchHHHHHHHHHHH-H
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY----L-----------GESERAVRQCFQRA-R 71 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~----~-----------~~~~~~~~~~~~~~-~ 71 (541)
|.+++..++|+|+||+|||+++..++... +..+++++...-.... . ......+..++... .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 36677789999999999999999998765 6788999875322110 0 01112222333322 3
Q ss_pred hcCCceEEEcCCccccC
Q psy7673 72 NSQPCVIFFDEIDALCP 88 (541)
Q Consensus 72 ~~~~~il~iDe~d~l~~ 88 (541)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 45689999999999875
No 153
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.82 E-value=2e-05 Score=76.40 Aligned_cols=116 Identities=14% Similarity=0.150 Sum_probs=67.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCccccc-c-------ccC----------------
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLN-M-------YLG---------------- 57 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~-~-------~~~---------------- 57 (541)
|.+++..++|+||||+|||+++..++... +..+++++...-+. . ..+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 46677789999999999999999999875 56788888765210 0 000
Q ss_pred chH---HHHHHHHHHHHh-cCCceEEEcCCccccCCCCCCCCCChh--HHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 58 ESE---RAVRQCFQRARN-SQPCVIFFDEIDALCPKRSSLGDNNSS--MRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 58 ~~~---~~~~~~~~~~~~-~~~~il~iDe~d~l~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
..+ ..+..+...... ..+.+|+||.+..+....... ..... ...+..++..|..+....++.||.+.+.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG-RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT-TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC-cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 011 122233333344 568999999999886432110 01111 1233444444443333345566666543
No 154
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.80 E-value=3e-05 Score=75.69 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=66.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCcccccc---------c-----------------
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLNM---------Y----------------- 55 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~~---------~----------------- 55 (541)
|.+++..++|+||||+|||+++..++... +..+++++...-+.. .
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45666778999999999999999999873 567888887652110 0
Q ss_pred -cCchHHHHHHHHHHHHh--cCCceEEEcCCccccCCCCCCCCCChh--HHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy7673 56 -LGESERAVRQCFQRARN--SQPCVIFFDEIDALCPKRSSLGDNNSS--MRIVNQLLTEMDGFEGRGGVFLMAATNRP 128 (541)
Q Consensus 56 -~~~~~~~~~~~~~~~~~--~~~~il~iDe~d~l~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~vi~t~~~~ 128 (541)
..+....+..+...+.. ..+.+|+||.+..+....... ..... ...+..++..|..+....++.||.+++..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~-~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG-RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG-GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 01111122222333344 567899999999987432110 00111 11234444444433334456677766543
No 155
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.77 E-value=0.0001 Score=68.31 Aligned_cols=114 Identities=20% Similarity=0.193 Sum_probs=65.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHH--HH--hCCcEEEEeCcccccc------cc------------------------
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVA--NE--AGINFISVKGPELLNM------YL------------------------ 56 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a--~~--~~~~~~~i~~~~l~~~------~~------------------------ 56 (541)
|..++..+.|.||+|+||||+++.++ .. .+...+.++....... ..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 56778889999999999999999998 33 2555555554321100 00
Q ss_pred ------------CchHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEe
Q psy7673 57 ------------GESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAA 124 (541)
Q Consensus 57 ------------~~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t 124 (541)
.........+...+....|.+|+|||...+..... +.....+.+..++..+.. .+..||.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~---d~~~~~~~l~~l~~~l~~----~g~tii~v 178 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE---EERKIREVLLKLNTILLE----MGVTTILT 178 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS---SGGGHHHHHHHHHHHHHH----HCCEEEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC---CHHHHHHHHHHHHHHHHH----CCCeEEEE
Confidence 00122233334444557899999999887753211 112334445555555531 24577778
Q ss_pred cCCCCCC
Q psy7673 125 TNRPDII 131 (541)
Q Consensus 125 ~~~~~~l 131 (541)
++..+..
T Consensus 179 tH~~~~~ 185 (251)
T 2ehv_A 179 TEAPDPQ 185 (251)
T ss_dssp ECCC---
T ss_pred ECCCCCC
Confidence 8766544
No 156
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.75 E-value=5.1e-05 Score=88.27 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=74.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc----cC--------chHHHHHHHHHHHH----
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY----LG--------ESERAVRQCFQRAR---- 71 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~----~~--------~~~~~~~~~~~~~~---- 71 (541)
|..++..++|.|+||+|||+++..+|..+ +.++++++......+. ++ .....+..++..++
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 36788889999999999999999999877 4579999876543332 11 00111233333332
Q ss_pred hcCCceEEEcCCccccC-CC----CCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy7673 72 NSQPCVIFFDEIDALCP-KR----SSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP 128 (541)
Q Consensus 72 ~~~~~il~iDe~d~l~~-~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~ 128 (541)
...|++|+||.++.+.. .. ..+.......+.+..++..|..+....++.||++++-.
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~ 869 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 869 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecccc
Confidence 25789999999999986 21 11111112233455656666655556677888887643
No 157
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.72 E-value=0.00021 Score=66.08 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
|..++..++|+||||+|||+++..++... +..+++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 46677789999999999999998887654 5677777653
No 158
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.71 E-value=4.4e-05 Score=75.64 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=65.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCcccccc--------ccC----------------
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLNM--------YLG---------------- 57 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~l~~~--------~~~---------------- 57 (541)
|..+...++|+||||+|||++++.++-.. +..+++++..+.... ..+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56677789999999999999999887443 245888886542110 000
Q ss_pred ---chHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCCChh-HHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 58 ---ESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSS-MRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 58 ---~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
.....+..+...+....|.+|+||++..+............. .+.+..++..|..+....++.||.+++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 011122233333445678999999998887543221000011 1223444444444333445677777765
No 159
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=97.65 E-value=0.00014 Score=72.14 Aligned_cols=196 Identities=12% Similarity=0.010 Sum_probs=106.4
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhcccCchhHhhhcCCCCcc
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNLLSSIEHVN 381 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~~~~~~~ 381 (541)
..+.+.|.+.+ ..|++|+++++|++|..++++|.|.+.+| ++.||.||+|+..+. ..+++.... .++..+
T Consensus 164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s-~~l~~~~~~-------~~~~~~ 234 (382)
T 1ryi_A 164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS-GMFFKQLGL-------NNAFLP 234 (382)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT-HHHHHHTTC-------CCCCEE
T ss_pred HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhH-HHHHHhcCC-------CCceec
Confidence 56777777776 56789999999999998888898888777 799999999998763 233322110 123344
Q ss_pred EEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccC-CcccCCCCHHHHHHHHHHHHHh
Q psy7673 382 VAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWY-DTYFKGQSKEYILDIACRYVHE 460 (541)
Q Consensus 382 ~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~-~~~~~~~~~e~~~~~~~~~l~~ 460 (541)
+....+.++........ .+... ...+ ++..++..+ +++... ..+.. ..+++..+.+++.+.+
T Consensus 235 ~~g~~~~~~~~~~~~~~--~~~~~------~~~~-----~p~~~g~~~---vG~~~~~~~~~~-~~~~~~~~~l~~~~~~ 297 (382)
T 1ryi_A 235 VKGECLSVWNDDIPLTK--TLYHD------HCYI-----VPRKSGRLV---VGATMKPGDWSE-TPDLGGLESVMKKAKT 297 (382)
T ss_dssp EEEEEEEEECCSSCCCS--EEEET------TEEE-----EECTTSEEE---EECCCEETCCCC-SCCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCccc--eEEcC------CEEE-----EEcCCCeEE---EeecccccCCCC-CCCHHHHHHHHHHHHH
Confidence 44444444432111111 11100 0111 122222222 222111 11111 3345677788888888
Q ss_pred HcCCCCCCceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHHHHHHhh
Q psy7673 461 ILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAVESIKW 533 (541)
Q Consensus 461 ~~g~~~~~~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~aa~~i~~ 533 (541)
+++.-... .....|....|. +++........ ...+++|+++. +.|.|+..|..+|+.+|+.|+.
T Consensus 298 ~~p~l~~~--~~~~~w~g~~~~-t~d~~p~ig~~-----~~~~~l~~~~G-~~g~G~~~a~~~g~~la~~i~~ 361 (382)
T 1ryi_A 298 MLPAIQNM--KVDRFWAGLRPG-TKDGKPYIGRH-----PEDSRILFAAG-HFRNGILLAPATGALISDLIMN 361 (382)
T ss_dssp HCGGGGGS--EEEEEEEEEEEE-CSSSCCEEEEE-----TTEEEEEEEEC-CSSCTTTTHHHHHHHHHHHHTT
T ss_pred hCCCcCCC--ceeeEEEEeccc-CCCCCcEeccC-----CCcCCEEEEEc-CCcchHHHhHHHHHHHHHHHhC
Confidence 87532211 234556433331 11110000000 01347888865 4567899999999999998854
No 160
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.65 E-value=0.00012 Score=66.20 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=44.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcc-------ccccccCc-----hHHHHHHHHHHHHh----cC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPE-------LLNMYLGE-----SERAVRQCFQRARN----SQ 74 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~-------l~~~~~~~-----~~~~~~~~~~~~~~----~~ 74 (541)
+..-++++|++|+||||++..++.++ +..++.+.... +.+. .+. .......++..+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 34567788999999999999988777 66777664321 1111 010 00011234444443 34
Q ss_pred CceEEEcCCccc
Q psy7673 75 PCVIFFDEIDAL 86 (541)
Q Consensus 75 ~~il~iDe~d~l 86 (541)
+.+|+|||++.+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 789999999886
No 161
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.64 E-value=0.0001 Score=64.42 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGP 49 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~ 49 (541)
+..|+|+|+||+||||+++.+++.++.+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 46799999999999999999999999888876653
No 162
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.60 E-value=8.9e-05 Score=72.36 Aligned_cols=40 Identities=28% Similarity=0.249 Sum_probs=33.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCcc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPE 50 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~ 50 (541)
|..++..+.|+||+|+|||++++.++... +..+++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 56677789999999999999999999876 24668888754
No 163
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.56 E-value=5.6e-05 Score=69.20 Aligned_cols=40 Identities=28% Similarity=0.249 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeCcc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPE 50 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------~~~~~~i~~~~ 50 (541)
|..++.-+.|.||+|+||||+++.++... +...++++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 45667779999999999999999999854 23477777643
No 164
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.56 E-value=0.0002 Score=82.47 Aligned_cols=78 Identities=28% Similarity=0.343 Sum_probs=53.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccc----cCc--------hHHHHHHHHHHH----H
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMY----LGE--------SERAVRQCFQRA----R 71 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~----~~~--------~~~~~~~~~~~~----~ 71 (541)
|..++..++|+||||+|||+++..++... +.++.+++........ .+. ....+..++..+ .
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 47788899999999999999999998776 5678888875533211 110 000112233322 2
Q ss_pred hcCCceEEEcCCccccC
Q psy7673 72 NSQPCVIFFDEIDALCP 88 (541)
Q Consensus 72 ~~~~~il~iDe~d~l~~ 88 (541)
...|++|+||.++.+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 46789999999999975
No 165
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.53 E-value=0.00063 Score=69.71 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=51.3
Q ss_pred ceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCccccCCCCCCeEEEecCCCHH
Q psy7673 76 CVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD--IIDPAVMRPGRFDRILFVNLPNEQ 153 (541)
Q Consensus 76 ~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~--~l~~~l~~~~r~~~~i~~~~p~~~ 153 (541)
-+|+|||++.+..... ..+...+..... .-...++.+|.+|+++. .++..++. .|...|.|...+..
T Consensus 345 ivvVIDE~~~L~~~~~--------~~~~~~L~~Iar-~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG--------KKVEELIARIAQ-KARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC--------HHHHHHHHHHHH-HCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh--------HHHHHHHHHHHH-HHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHH
Confidence 4788999998864311 122222222222 22356799999999887 78888887 78889999999998
Q ss_pred HHHHHHH
Q psy7673 154 DRKEILL 160 (541)
Q Consensus 154 ~r~~il~ 160 (541)
+...||.
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8887773
No 166
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.52 E-value=6.9e-05 Score=65.91 Aligned_cols=33 Identities=18% Similarity=0.078 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVK 47 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~ 47 (541)
+.-++++||+|+||||++..++.++ +.+++.+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3467899999999999997776654 56655553
No 167
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.51 E-value=7.7e-05 Score=72.20 Aligned_cols=115 Identities=9% Similarity=0.089 Sum_probs=65.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------------C----CcEEEEeCcccc-cc-------cc-------
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---------------G----INFISVKGPELL-NM-------YL------- 56 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---------------~----~~~~~i~~~~l~-~~-------~~------- 56 (541)
|.+++..++|+|+||+|||+++..++... + ..+++++...-+ .. ..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45667779999999999999999998763 2 578888876531 10 00
Q ss_pred ---------CchH---HHHHHHHHHHHh-cCCceEEEcCCccccCCCCCCCCCChh--HHHHHHHHHHhcCCCCCCCeEE
Q psy7673 57 ---------GESE---RAVRQCFQRARN-SQPCVIFFDEIDALCPKRSSLGDNNSS--MRIVNQLLTEMDGFEGRGGVFL 121 (541)
Q Consensus 57 ---------~~~~---~~~~~~~~~~~~-~~~~il~iDe~d~l~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~v 121 (541)
...+ ..+..+...... ..+.+|+||.+..+....... ..... ...+..++..|..+....++.|
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~~~~~~r~~~~~~~~~~L~~la~~~~~~v 252 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG-RGKLAERQQKLGRHMATLNKLADLFNCVV 252 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC-TTSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 0011 112223333334 567899999999886432110 01111 1234444444443333445667
Q ss_pred EEecC
Q psy7673 122 MAATN 126 (541)
Q Consensus 122 i~t~~ 126 (541)
|.+.+
T Consensus 253 i~~nq 257 (322)
T 2i1q_A 253 LVTNQ 257 (322)
T ss_dssp EEEEC
T ss_pred EEECc
Confidence 76654
No 168
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=97.51 E-value=0.0066 Score=59.75 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=47.0
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhH
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
..+..+|++.+ ..|++|+++++|++|..++++|.|++.+| ++.||+||+|+-++.
T Consensus 154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence 56777777777 56889999999999999888899998888 799999999988763
No 169
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.51 E-value=0.00047 Score=60.36 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcc---------cccccc-----------------CchHHHHHHH
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPE---------LLNMYL-----------------GESERAVRQC 66 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~---------l~~~~~-----------------~~~~~~~~~~ 66 (541)
..|++++++|.||||++-.++-+. |.++..+.... +..... .+........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 368899999999999999998766 78888885432 222210 0012233444
Q ss_pred HHHHHh----cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy7673 67 FQRARN----SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP 128 (541)
Q Consensus 67 ~~~~~~----~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~ 128 (541)
+..+.. ...++|+|||+.....-.-- . ...+++.+.. ...+.-||.|+|.+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l-----~----~~ev~~~l~~--Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL-----P----LEEVISALNA--RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS-----C----HHHHHHHHHT--SCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC-----C----HHHHHHHHHh--CcCCCEEEEECCCC
Confidence 444433 45789999999653211100 0 1345555553 34457888888864
No 170
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=97.47 E-value=0.0099 Score=62.17 Aligned_cols=204 Identities=10% Similarity=0.075 Sum_probs=116.0
Q ss_pred ccccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeC--CcEE-EEecCceeEeeCEEEEcCChhHHHhhhcccCch
Q psy7673 294 SVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLE--KGVK-VTLNNDQHIEANHVVSALPAPKLGMLLHKQHPT 369 (541)
Q Consensus 294 ~~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~--~~~~-v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~ 369 (541)
+++...|||+.|+++|++.+ ..|+.|+++++|.+|..++ +++. |+..+|+++.||+||++ |.. ++ +.
T Consensus 369 g~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~-~~~-----lp---~~ 439 (650)
T 1vg0_A 369 PFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE-DSY-----LS---EN 439 (650)
T ss_dssp SEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE-GGG-----BC---TT
T ss_pred ceEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEC-hhh-----cC---Hh
Confidence 57888999999999999988 6788999999999999876 5454 55567889999999983 222 22 11
Q ss_pred hHhhhcCCCCccEEEEEEeeCCCCCCCC---ccEE-EecCCC--CCCceEEEeecccc-cCCCcEEEEEEecCccCCccc
Q psy7673 370 LGNLLSSIEHVNVAVINLAYENIPMKQN---AFGF-LVPPRE--KLPILGVVFDSCCF-EQADWTILTVMMGGAWYDTYF 442 (541)
Q Consensus 370 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~---~~g~-l~~~~~--~~~~~~~~~~s~~~-~~~~~~~l~~~~~g~~~~~~~ 442 (541)
. ..+..+..+..+.+.++++..... ..+. ++|..+ +.++..++..+..- -+.|..++.+... .
T Consensus 440 ~---~~~~~~~~v~R~i~i~~~pi~~~~~~~~~~~iiiP~~~g~~~~V~i~~~Ss~~~~cP~G~~Vv~lst~---~---- 509 (650)
T 1vg0_A 440 T---CSRVQYRQISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTCM---S---- 509 (650)
T ss_dssp T---TTTCCCEEEEEEEEEESSCSSCCSCCCCCEEEEECCSSTTSCCEEEEEECGGGTSSCTTCEEEEEEEE---C----
T ss_pred H---hccccccceEEEEEEecCCCCCcCCCcceEEEEccCccCCCCCEEEEEeCCCCCCCCCCCEEEEEEee---c----
Confidence 1 123356778888888877543321 1233 334432 23343333333211 1345545444331 1
Q ss_pred CCCCHHHHHHHHHHHHHhHcCCC----------CCC--ceeEeeeccCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEcC
Q psy7673 443 KGQSKEYILDIACRYVHEILDMP----------RTP--HAQHVEILKACIPQYTLGHAARVKDIQGYIDTHQLPLYLTGS 510 (541)
Q Consensus 443 ~~~~~e~~~~~~~~~l~~~~g~~----------~~~--~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~laG~ 510 (541)
. .+.++-++.+++.| ++.. ..| .|.-....+.. +.+.. . .......+++++-.
T Consensus 510 ~-~~~~~eLe~~l~~L---~~~~~~~~~~~~~~~~~~vLws~~~~~~~~---~~~~~-----~---~~~~~~~ni~~~~~ 574 (650)
T 1vg0_A 510 S-KTAREDLERVVQKL---FTPYTEIEAENEQVEKPRLLWALYFNMRDS---SDISR-----D---CYNDLPSNVYVCSG 574 (650)
T ss_dssp S-SCHHHHHHHHHHHH---CBSCSCCC-------CCBEEEEEEEEEEEC---TTCCG-----G---GSSSCCTTEEEECC
T ss_pred C-CCHHHHHHHHHHHH---hccccccccccccccCCceEEEEEEEeecc---ccccc-----c---cccCCCCCEEEeCC
Confidence 1 23455555555554 3221 112 12111222211 11110 0 01112458999876
Q ss_pred CCCCCChHHHHHHHHHHHHHH
Q psy7673 511 SYDGVGVNDVIALSKKAVESI 531 (541)
Q Consensus 511 ~~~g~~v~~ai~sg~~aa~~i 531 (541)
+-.....++++..++.+=++|
T Consensus 575 ~d~~~~fe~~v~~~~~i~~~i 595 (650)
T 1vg0_A 575 PDSGLGNDNAVKQAETLFQQI 595 (650)
T ss_dssp CCSSSSSHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHH
Confidence 666677899999888887776
No 171
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.45 E-value=7.4e-05 Score=66.74 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
...++..++|.|++|+||||+++.+++.++..++..
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 445677899999999999999999999999887643
No 172
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.42 E-value=8.1e-05 Score=65.55 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
.+..|+|+|++|+||||+++.+++.++.+++..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 356899999999999999999999999887644
No 173
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.38 E-value=0.00033 Score=66.13 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
|..++..++|+||+|+|||++++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56677789999999999999999998654
No 174
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.37 E-value=0.00084 Score=63.94 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=32.2
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeC
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKG 48 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~ 48 (541)
++..++.-++|.||||+|||++++.++..+ +.++++++.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 478888899999999999999999998766 446666653
No 175
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.35 E-value=0.00011 Score=64.39 Aligned_cols=32 Identities=41% Similarity=0.781 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
.+..|+|+|+||+||||+++.+++.++..++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 45679999999999999999999999877653
No 176
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.35 E-value=0.001 Score=63.90 Aligned_cols=39 Identities=23% Similarity=0.122 Sum_probs=32.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
|..++.-++|.|+||+|||+++..++... +.++++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 67888889999999999999999998765 4677777753
No 177
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.34 E-value=0.00042 Score=70.33 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~ 49 (541)
|..++.-++|.|+||+|||+++..++... +.++.+++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 67788889999999999999999998755 5578887753
No 178
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.33 E-value=0.00019 Score=63.49 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=29.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
.+.+..|+|.|+||+||||+++.+++.++..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456789999999999999999999999877654
No 179
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.32 E-value=0.0015 Score=58.55 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
.++++.|++|+||||++-.+|..+ |..++.++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 469999999999999999998776 7777777663
No 180
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.32 E-value=0.00086 Score=61.96 Aligned_cols=39 Identities=31% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH----hCCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANE----AGINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~----~~~~~~~i~~~ 49 (541)
|.+++.-++|+|+||+|||+++..++.+ .+.++++++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4667778999999999999999987643 26677777653
No 181
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.31 E-value=0.0008 Score=68.42 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=49.8
Q ss_pred Cc-eEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCccccCCCCCCeEEEecCCC
Q psy7673 75 PC-VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD--IIDPAVMRPGRFDRILFVNLPN 151 (541)
Q Consensus 75 ~~-il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~--~l~~~l~~~~r~~~~i~~~~p~ 151 (541)
|. +|+|||+..+... .......++..+...-...++.+|.+|+++. .++..++. .+...|.|...+
T Consensus 297 P~ivlvIDE~~~ll~~---------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s 365 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT---------VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 365 (512)
T ss_dssp CEEEEEEETHHHHHHH---------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSS
T ss_pred CcEEEEEeCHHHHHhh---------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCC
Confidence 44 7889999877531 1111223333222222344688888898876 57777776 788889999999
Q ss_pred HHHHHHHHH
Q psy7673 152 EQDRKEILL 160 (541)
Q Consensus 152 ~~~r~~il~ 160 (541)
..+...|+.
T Consensus 366 ~~dsr~ilg 374 (512)
T 2ius_A 366 KIDSRTILD 374 (512)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 999888874
No 182
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.30 E-value=0.00016 Score=64.64 Aligned_cols=37 Identities=41% Similarity=0.567 Sum_probs=30.2
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
.....+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3445566799999999999999999999999876543
No 183
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=97.30 E-value=0.018 Score=56.22 Aligned_cols=207 Identities=8% Similarity=-0.002 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc-EEEEecCc--eeEeeCEEEEcCChhHHHhhhccc-CchhHhhhcC
Q psy7673 302 LQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG-VKVTLNND--QHIEANHVVSALPAPKLGMLLHKQ-HPTLGNLLSS 376 (541)
Q Consensus 302 ~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~-~~v~~~~g--~~~~ad~VI~t~P~~~~~~ll~~~-~~~~~~~l~~ 376 (541)
...+.++|.+.+ ..|++|+++++|++|..++++ |.|.+.+| .++.||.||+|+-.+ ...+++.+ ..+. ...
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~-s~~l~~~~~g~~~---~~~ 224 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLH-APGLARRIEGIPR---DSI 224 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGG-HHHHHHTEETSCG---GGS
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcc-hHHHHHHhcCCCc---ccc
Confidence 356777777777 568899999999999988766 88888877 478999999999776 34444322 1000 001
Q ss_pred CCCccEEEEEEeeCCCCCCCCccEEEecCCCCCCceEEEeecccccCCCcEEEEEEecCccC--CcccCCCCHHHHHHHH
Q psy7673 377 IEHVNVAVINLAYENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQADWTILTVMMGGAWY--DTYFKGQSKEYILDIA 454 (541)
Q Consensus 377 ~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~g~~~--~~~~~~~~~e~~~~~~ 454 (541)
....+.---++.++... +.....|..|......+ .+. .+..+. +.+++... ..... ..+++.++.+
T Consensus 225 ~~i~p~rG~~~~~~~~~-~~~~~~~~~p~~~~~~~---~~~---~~~~g~----~~iG~t~e~~~~~~~-~~~~~~~~~l 292 (369)
T 3dme_A 225 PPEYLCKGSYFTLAGRA-PFSRLIYPVPQHAGLGV---HLT---LDLGGQ----AKFGPDTEWIATEDY-TLDPRRADVF 292 (369)
T ss_dssp CCCEEEEEEEEECSSSC-SCSSEEEECTTCSSCCC---CEE---ECTTSC----EEECCCCEEESSCCC-CCCGGGGGGH
T ss_pred ceeeecceEEEEECCCC-ccCceeecCCCCCCceE---EEe---CccCCc----EEECCCccccccccc-ccCHHHHHHH
Confidence 12333333334444321 22222333333221111 010 011121 22222111 11111 2334556667
Q ss_pred HHHHHhHcCCCCCCceeEeeeccCCCCCCC----CCHHHHH-HHHHHHHhhCCCCEEEEcCCCCCCChHHHHHHHHHHHH
Q psy7673 455 CRYVHEILDMPRTPHAQHVEILKACIPQYT----LGHAARV-KDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAVE 529 (541)
Q Consensus 455 ~~~l~~~~g~~~~~~~~~~~~w~~a~p~~~----~g~~~~~-~~~~~~l~~~~~~l~laG~~~~g~~v~~ai~sg~~aa~ 529 (541)
++.+.++++.-... .....|.+..|... +.....+ ... ....++|+++..+ .+.|+-.+...|+.+|+
T Consensus 293 ~~~~~~~~P~l~~~--~v~~~w~G~Rp~~~~~~~~d~~p~i~g~~----~~~~~~l~~~~G~-~~~G~t~ap~~a~~~a~ 365 (369)
T 3dme_A 293 YAAVRSYWPALPDG--ALAPGYTGIRPKISGPHEPAADFAIAGPA----SHGVAGLVNLYGI-ESPGLTASLAIAEETLA 365 (369)
T ss_dssp HHHHHTTCTTCCTT--CCEEEEEEEEEESSCTTSCCCCCEEECHH----HHCCTTEEEEECC-CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCChh--hceecceeccccccCCCCCcCCeEEeccc----ccCCCCEEEEeCC-CCchHhccHHHHHHHHH
Confidence 77778887542211 11334544333211 0000000 000 0134688888554 44688889999999998
Q ss_pred HH
Q psy7673 530 SI 531 (541)
Q Consensus 530 ~i 531 (541)
.|
T Consensus 366 ~i 367 (369)
T 3dme_A 366 RL 367 (369)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 184
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.27 E-value=0.0005 Score=63.87 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=33.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
...+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4456789999999999999999999999876777777655
No 185
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.26 E-value=0.00055 Score=59.85 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=42.5
Q ss_pred CCcEEEEEcCCCCcHH-HHHHHHHHHh--CCcEEEEeCc---cccccccCch--------HHHHHHHHHHHHhcCCceEE
Q psy7673 14 TPSGVLLCGPPGCGKT-LLAKAVANEA--GINFISVKGP---ELLNMYLGES--------ERAVRQCFQRARNSQPCVIF 79 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT-~l~~~~a~~~--~~~~~~i~~~---~l~~~~~~~~--------~~~~~~~~~~~~~~~~~il~ 79 (541)
...-.+++||.|+||| .|++++.+.. +..++.+... .......... ......++... ....+|+
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~--~~~DvIl 96 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIG 96 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH--HTCSEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhc--cCCCEEE
Confidence 4456789999999999 8888887654 7778887643 1111100000 00111222222 2357999
Q ss_pred EcCCccc
Q psy7673 80 FDEIDAL 86 (541)
Q Consensus 80 iDe~d~l 86 (541)
|||++-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999988
No 186
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.26 E-value=0.0042 Score=65.37 Aligned_cols=149 Identities=17% Similarity=0.151 Sum_probs=78.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH-------hCCcEEEEeCcccc-----ccc-----------------cCchHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANE-------AGINFISVKGPELL-----NMY-----------------LGESERAVR 64 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~-------~~~~~~~i~~~~l~-----~~~-----------------~~~~~~~~~ 64 (541)
..+.++|+|++|+|||++++.+++. ....++.++.+... ... .........
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKD 225 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHH
Confidence 4567899999999999999998642 22234444433210 000 001111222
Q ss_pred HHHHHHHh-cCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCCe
Q psy7673 65 QCFQRARN-SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDR 143 (541)
Q Consensus 65 ~~~~~~~~-~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~~ 143 (541)
.+...... .++.+|+|||++.. ..+..+ ..+..||.||....... .. . ..
T Consensus 226 ~l~~~l~~~~~~~LLVLDdv~~~------------------~~l~~l-----~~~~~ilvTsR~~~~~~-~~-~----~~ 276 (591)
T 1z6t_A 226 RLRILMLRKHPRSLLILDDVWDS------------------WVLKAF-----DSQCQILLTTRDKSVTD-SV-M----GP 276 (591)
T ss_dssp HHHHHHHHTCTTCEEEEEEECCH------------------HHHHTT-----CSSCEEEEEESCGGGGT-TC-C----SC
T ss_pred HHHHHHccCCCCeEEEEeCCCCH------------------HHHHHh-----cCCCeEEEECCCcHHHH-hc-C----CC
Confidence 22222222 25789999999753 122222 23456777777543111 00 1 22
Q ss_pred EEEe---cCCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHHHH
Q psy7673 144 ILFV---NLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQL 197 (541)
Q Consensus 144 ~i~~---~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~~l 197 (541)
.+.+ ...+.++-.+++...+.... .........+. +.+.|. |--|..+
T Consensus 277 ~~~v~~l~~L~~~ea~~L~~~~~~~~~---~~~~~~~~~i~--~~~~G~-PLal~~~ 327 (591)
T 1z6t_A 277 KYVVPVESSLGKEKGLEILSLFVNMKK---ADLPEQAHSII--KECKGS-PLVVSLI 327 (591)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHTSCG---GGSCTHHHHHH--HHHTTC-HHHHHHH
T ss_pred ceEeecCCCCCHHHHHHHHHHHhCCCc---ccccHHHHHHH--HHhCCC-cHHHHHH
Confidence 3344 46799999999988876411 11112345555 678885 5444443
No 187
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.25 E-value=0.00019 Score=74.85 Aligned_cols=34 Identities=38% Similarity=0.452 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKG 48 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~ 48 (541)
...++|.|+||||||+++..++..+ +.++..+-.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 4678999999999999999998765 666665543
No 188
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.24 E-value=0.00067 Score=68.66 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=32.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~ 49 (541)
|..++.-++|.|+||+|||+++..++... +.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 67788889999999999999999998754 5678888763
No 189
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.24 E-value=0.00031 Score=66.99 Aligned_cols=36 Identities=39% Similarity=0.566 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPE 50 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~ 50 (541)
+..++|+||+|+|||++++.+|++++..++.+|...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 457899999999999999999999998887776543
No 190
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.24 E-value=0.00017 Score=62.39 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
.+..+++|.|++||||||+++.+++.++++++..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3456899999999999999999999999887643
No 191
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.22 E-value=0.00021 Score=61.93 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
.|+|.|++|+||||+++.+++.++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998776444
No 192
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.21 E-value=0.00019 Score=63.11 Aligned_cols=32 Identities=34% Similarity=0.653 Sum_probs=27.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH-hCCcEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANE-AGINFI 44 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~-~~~~~~ 44 (541)
..+..++|+|++|+||||+++.+++. ++++++
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 34567999999999999999999998 676555
No 193
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.19 E-value=0.00021 Score=63.26 Aligned_cols=42 Identities=31% Similarity=0.473 Sum_probs=33.2
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
.+..++..+.|.||+|+||||+++.++...+...+.++..++
T Consensus 4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 4 TDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp --CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 355677789999999999999999999887767777775543
No 194
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.18 E-value=0.00019 Score=63.12 Aligned_cols=30 Identities=27% Similarity=0.649 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
..|+|+|+||+||||+++.+++.++++++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 458999999999999999999999988664
No 195
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=97.18 E-value=0.013 Score=60.68 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=45.6
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCC----cEEEEecCc---eeEeeCEEEEcCChhH-HHhhh
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEK----GVKVTLNND---QHIEANHVVSALPAPK-LGMLL 363 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~----~~~v~~~~g---~~~~ad~VI~t~P~~~-~~~ll 363 (541)
..+...|.+.+ ..|++|+++++|++|.++++ +|+|++.++ .++.||.||.|.-... +.+.+
T Consensus 120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~l 189 (535)
T 3ihg_A 120 DKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRSLVRESL 189 (535)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHT
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcchHHHHc
Confidence 34555566655 44789999999999999888 888877665 6789999999986643 33443
No 196
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.15 E-value=0.0021 Score=63.97 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=52.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccc--------------------cccCchHHHHHHHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLN--------------------MYLGESERAVRQCFQRA 70 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~--------------------~~~~~~~~~~~~~~~~~ 70 (541)
+|..+++.|++|+||||++..+|..+ +..+..++|..+.. .............+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999877 77888888754311 01122344455667777
Q ss_pred HhcCCceEEEcCCccc
Q psy7673 71 RNSQPCVIFFDEIDAL 86 (541)
Q Consensus 71 ~~~~~~il~iDe~d~l 86 (541)
....+.+++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7766799999988554
No 197
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.15 E-value=0.0011 Score=61.93 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEeCcccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANE---AGINFISVKGPELL 52 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~---~~~~~~~i~~~~l~ 52 (541)
+..|+|.|+||+||||+++.++.. .+..++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 557899999999999999999998 68888767765443
No 198
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.15 E-value=0.00094 Score=63.57 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=48.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc--------------------ccCchHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM--------------------YLGESERAVRQCF 67 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~--------------------~~~~~~~~~~~~~ 67 (541)
...++..++|.|++|+||||++..+|..+ +..+..+++..+... ..++........+
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 34566789999999999999999999876 567777765432110 0011112222334
Q ss_pred HHHHhcCCceEEEcCCcc
Q psy7673 68 QRARNSQPCVIFFDEIDA 85 (541)
Q Consensus 68 ~~~~~~~~~il~iDe~d~ 85 (541)
..+....+.+++||+.-.
T Consensus 180 ~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 180 AHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCc
Confidence 444566789999998753
No 199
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.14 E-value=0.00032 Score=60.85 Aligned_cols=30 Identities=27% Similarity=0.655 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFI 44 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~ 44 (541)
+..+.|+|++|+||||+++.++..++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456899999999999999999999887544
No 200
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=97.13 E-value=0.014 Score=59.86 Aligned_cols=61 Identities=16% Similarity=0.069 Sum_probs=45.7
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCce---eEeeCEEEEcCChhH-HHhhh
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQ---HIEANHVVSALPAPK-LGMLL 363 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~---~~~ad~VI~t~P~~~-~~~ll 363 (541)
..+.+.|.+.+ ..|++|+++++|++|++++++|+|++.++. +++||.||.|.-... +.+.+
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~l 172 (499)
T 2qa2_A 107 STTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAA 172 (499)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCHHHHHT
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccHHHHHc
Confidence 34555555555 347899999999999999889998876653 789999999986654 33444
No 201
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.13 E-value=0.00046 Score=60.28 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=31.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
..++..+.|.|++|+||||+++.++..+ +.+++.++..
T Consensus 2 ~~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 2 HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 3556778999999999999999999988 8888888754
No 202
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.13 E-value=0.00072 Score=65.87 Aligned_cols=98 Identities=17% Similarity=0.306 Sum_probs=58.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeC-cccc--------cc-ccCchHHHHHHHHHHHHhcCCceEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKG-PELL--------NM-YLGESERAVRQCFQRARNSQPCVIF 79 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~-~~l~--------~~-~~~~~~~~~~~~~~~~~~~~~~il~ 79 (541)
+...++|.||+|+||||++++++..+ +..++.+.- .++. .. ..+.....+...+..+....|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 44468999999999999999998876 344444321 1110 00 0111112234466667778999999
Q ss_pred EcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q psy7673 80 FDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI 130 (541)
Q Consensus 80 iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~ 130 (541)
+||.-. ......+++... .+..|+.|++..+.
T Consensus 202 lDEp~d--------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 202 VGEMRD--------------LETIRLALTAAE-----TGHLVFGTLHTTSA 233 (356)
T ss_dssp ESCCCS--------------HHHHHHHHHHHH-----TTCEEEEEESCSSH
T ss_pred cCCCCC--------------HHHHHHHHHHHh-----cCCEEEEEEccChH
Confidence 999841 122333333322 23468888887653
No 203
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.13 E-value=0.00031 Score=61.20 Aligned_cols=29 Identities=31% Similarity=0.602 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
.++|.|+||+||||+++.+++.++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999986653
No 204
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.10 E-value=0.0032 Score=57.69 Aligned_cols=34 Identities=29% Similarity=0.258 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGP 49 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~ 49 (541)
..++++||+|+|||.++..++...+..++.+-..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4599999999999999999998887666666543
No 205
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=97.08 E-value=0.008 Score=64.47 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=47.5
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCce-eEeeCEEEEcCChh
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQ-HIEANHVVSALPAP 357 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~-~~~ad~VI~t~P~~ 357 (541)
..+..+|.+.+ ..|++|+++++|++|..++++|.|.+.+|. ++.||+||+|+..+
T Consensus 412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~ 468 (689)
T 3pvc_A 412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHR 468 (689)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcc
Confidence 67788888877 568899999999999998888999988886 79999999999877
No 206
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=97.07 E-value=0.017 Score=59.34 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=45.3
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCce---eEeeCEEEEcCChhHH-Hhhh
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQ---HIEANHVVSALPAPKL-GMLL 363 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~---~~~ad~VI~t~P~~~~-~~ll 363 (541)
..+.+.|.+.+ ..|++|+++++|++|++++++|+|++.++. +++||.||.|.-.... .+.+
T Consensus 106 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~l 171 (500)
T 2qa1_A 106 SVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAA 171 (500)
T ss_dssp HHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchHHHHHc
Confidence 34555555555 347899999999999999889988876553 6899999999866543 3444
No 207
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.07 E-value=0.00037 Score=66.01 Aligned_cols=40 Identities=35% Similarity=0.539 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL 52 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~ 52 (541)
..+..++|.||||+||||+++.++.+++..++.+++..+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 3466799999999999999999999986566777765443
No 208
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.06 E-value=0.00052 Score=61.71 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=31.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL 52 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~ 52 (541)
.+.++.|+|.||||+||+|.++.|++.+++. .++..+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHH
Confidence 4566788999999999999999999999875 45555554
No 209
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.06 E-value=0.0009 Score=64.44 Aligned_cols=38 Identities=24% Similarity=0.173 Sum_probs=32.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKG 48 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~ 48 (541)
|..++.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 67888889999999999999999998765 677777765
No 210
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=97.05 E-value=0.0061 Score=60.80 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=46.2
Q ss_pred HHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChh
Q psy7673 303 QTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAP 357 (541)
Q Consensus 303 ~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 357 (541)
..+.+.|.+.+.. ++|+++++|+.|..++++|.|++.+|+++.||.||.|.-..
T Consensus 127 ~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~ 180 (407)
T 3rp8_A 127 AELQREMLDYWGR-DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSH 180 (407)
T ss_dssp HHHHHHHHHHHCG-GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTT
T ss_pred HHHHHHHHHhCCc-CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcC
Confidence 5677777777744 68999999999999999999999999889999999997654
No 211
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.05 E-value=0.00035 Score=62.01 Aligned_cols=32 Identities=22% Similarity=0.460 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
.+..|+|.|++|+||||+++.+++.++.+++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 45679999999999999999999999876553
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.04 E-value=0.0039 Score=62.07 Aligned_cols=73 Identities=19% Similarity=0.142 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc----------------c----cCchHHHHHHHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM----------------Y----LGESERAVRQCFQRA 70 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~----------------~----~~~~~~~~~~~~~~~ 70 (541)
++..+++.|++|+||||++..+|..+ +.++..+++.-.... + ...........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46788999999999999999999776 777777776422110 0 011222334445555
Q ss_pred HhcCCceEEEcCCccc
Q psy7673 71 RNSQPCVIFFDEIDAL 86 (541)
Q Consensus 71 ~~~~~~il~iDe~d~l 86 (541)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5557899999988654
No 213
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.03 E-value=0.00039 Score=64.57 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeC
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKG 48 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~ 48 (541)
.++|.||+|+||||+++.+|..++..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999999988776654
No 214
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.03 E-value=0.00051 Score=61.31 Aligned_cols=36 Identities=33% Similarity=0.676 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
.+..|+|.|++|+||||+++.+++.++..++ +...+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i--~~d~~ 52 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFI--EGDAL 52 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEE--EGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEE--eCCcC
Confidence 3567999999999999999999999987655 44444
No 215
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.02 E-value=0.00052 Score=62.22 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
++..|+|.|+||+||||+++.+++.++..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 45679999999999999999999999876543
No 216
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.01 E-value=0.0012 Score=61.44 Aligned_cols=73 Identities=23% Similarity=0.451 Sum_probs=44.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCc--ccc-------cc-ccCchHHHHHHHHHHHHhcCCce
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGP--ELL-------NM-YLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~--~l~-------~~-~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
..++..++|.||+|+||||+++.++..+ ...++..... .+. .. .++.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 4566678999999999999999998865 2333332211 000 00 00101112345555555668999
Q ss_pred EEEcCCc
Q psy7673 78 IFFDEID 84 (541)
Q Consensus 78 l~iDe~d 84 (541)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999974
No 217
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.01 E-value=0.00044 Score=60.76 Aligned_cols=30 Identities=37% Similarity=0.640 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFI 44 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~ 44 (541)
+..++|.|++|+||||+++.+++.++..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 456899999999999999999999987554
No 218
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.01 E-value=0.00046 Score=62.43 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
..+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3456799999999999999999999998766543
No 219
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=96.99 E-value=0.034 Score=56.22 Aligned_cols=56 Identities=20% Similarity=0.112 Sum_probs=41.4
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEE-EEe--c-Cce--eEeeCEEEEcCChhH
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVK-VTL--N-NDQ--HIEANHVVSALPAPK 358 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~-v~~--~-~g~--~~~ad~VI~t~P~~~ 358 (541)
..+.+.|.+.+ ..|++|+++++|++|..+++++. |+. . +|+ ++.||.||.|.-...
T Consensus 100 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 100 PLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence 34556666665 45789999999999998877754 443 2 665 789999999986654
No 220
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.98 E-value=0.00064 Score=60.03 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
..+..|+|.|++|+||||+++.+++.++..++.
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 345679999999999999999999999875543
No 221
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.98 E-value=0.00047 Score=61.61 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
...+..|+|.|++|+||||+++.+++.++..++.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 3455679999999999999999999999875543
No 222
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=96.97 E-value=0.083 Score=52.21 Aligned_cols=54 Identities=22% Similarity=0.144 Sum_probs=44.1
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChh
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAP 357 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 357 (541)
..+...|.+.+ ..|++|+++++|++|..++++|.|.+.+| ++.||.||+|+-.+
T Consensus 153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~ 207 (397)
T 2oln_A 153 RGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPY 207 (397)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence 45566666665 45789999999999999888899887766 69999999998765
No 223
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=96.97 E-value=0.0018 Score=69.38 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=48.2
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChh
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAP 357 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 357 (541)
..+..+|.+.+ ..|++|+++++|++|..++++|.|++.+|.++.||+||+|+-.+
T Consensus 417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~ 472 (676)
T 3ps9_A 417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQ 472 (676)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcc
Confidence 66778888777 56889999999999999988999998887789999999998776
No 224
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.97 E-value=0.00057 Score=60.49 Aligned_cols=35 Identities=29% Similarity=0.493 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
+..|+|.|+||+||||+++.+++.++.+++ +..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~ 37 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGEL 37 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHH
Confidence 567899999999999999999999987654 44443
No 225
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.97 E-value=0.00045 Score=63.72 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
.++..|+|.|+||+||||+++.+++.++..++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 467789999999999999999999999876553
No 226
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.96 E-value=0.00094 Score=58.69 Aligned_cols=47 Identities=30% Similarity=0.323 Sum_probs=30.8
Q ss_pred CCCCCchhhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 1 MFPVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
|.|+.++. ...++..++|.|++|+||||+++.++..+ +.++..++..
T Consensus 1 ~~~~~~~~--~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 1 MQALTTYK--CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp -------C--CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred Cccccccc--ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 34555522 23456789999999999999999999887 4556666643
No 227
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.96 E-value=0.0038 Score=55.98 Aligned_cols=105 Identities=18% Similarity=0.126 Sum_probs=53.0
Q ss_pred CCCCchhhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHH------------HHHH
Q psy7673 2 FPVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERA------------VRQC 66 (541)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~------------~~~~ 66 (541)
.|+..|.-.......-.+++|+.|+|||+.+-..+.+. +.+++.+.... -..+....... ...+
T Consensus 6 ~~~~~p~~~~~~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~-D~Ryg~~i~sr~G~~~~a~~i~~~~di 84 (234)
T 2orv_A 6 LPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK-DTRYSSSFCTHDRNTMEALPACLLRDV 84 (234)
T ss_dssp ------------CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT-CCCC-----------CEEEEESSGGGG
T ss_pred CccccCCCCCCCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC-CccchHHHHhhcCCeeEEEecCCHHHH
Confidence 35555555555566778889999999998777776655 66666665221 01110000000 0113
Q ss_pred HHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q psy7673 67 FQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127 (541)
Q Consensus 67 ~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~ 127 (541)
+..+ ....+|+|||++.+.. +..+++.+++ .++.||++..+
T Consensus 85 ~~~~--~~~dvViIDEaQF~~~--------------v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 85 AQEA--LGVAVIGIDEGQFFPD--------------IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp HHHH--TTCSEEEESSGGGCTT--------------HHHHHHHHHH----TTCEEEEECCS
T ss_pred HHHh--ccCCEEEEEchhhhhh--------------HHHHHHHHHh----CCCEEEEEecc
Confidence 3333 3457999999998730 3455555553 34577777664
No 228
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.96 E-value=0.0029 Score=63.68 Aligned_cols=39 Identities=23% Similarity=0.122 Sum_probs=32.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
|..++.-++|.|+||+|||+++..+|... +.++.+++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 67778889999999999999999998766 6778888753
No 229
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.96 E-value=0.00054 Score=62.45 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
..+..|+|.|++|+||||+++.+++.++..++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 456789999999999999999999999876553
No 230
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.96 E-value=0.0013 Score=56.91 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=19.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKA 34 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~ 34 (541)
..++.-+.|.||+|+||||+++.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 34566789999999999999994
No 231
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.95 E-value=0.00068 Score=60.42 Aligned_cols=38 Identities=29% Similarity=0.459 Sum_probs=29.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
..++..+.|.||+|+||||+++.++..++. +.++..++
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 456678999999999999999999999865 44555444
No 232
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.94 E-value=0.00043 Score=60.62 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFI 44 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~ 44 (541)
+..|+|.|++|+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 467899999999999999999999998766
No 233
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.93 E-value=0.00077 Score=58.54 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
++..++|.|++|+||||+++.++..++.. .++..++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~--~i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAA--FLDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCE--EEEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcE--EEeCccc
Confidence 35578999999999999999999988764 4455444
No 234
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.92 E-value=0.00061 Score=59.02 Aligned_cols=30 Identities=27% Similarity=0.697 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
..|+|.|++|+||||+++.+++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 468999999999999999999999987653
No 235
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=96.92 E-value=0.00089 Score=67.71 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=52.8
Q ss_pred cccccccccHHHHHHHHHHhc-cCCcEEeccceeeEEEE-eCCc-EEEEecCceeEeeCEEEEcCCh
Q psy7673 293 WSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEF-LEKG-VKVTLNNDQHIEANHVVSALPA 356 (541)
Q Consensus 293 ~~~~~~~~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~-~~~~-~~v~~~~g~~~~ad~VI~t~P~ 356 (541)
.+++.+.+|++.|+++|++.+ ..|++|+++++|++|.. ++++ +.|++.+|+++.||+||++...
T Consensus 246 s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~ 312 (475)
T 3p1w_A 246 SPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSY 312 (475)
T ss_dssp CSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGG
T ss_pred CceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCc
Confidence 356778999999999999988 67889999999999998 5444 5688888888999999999743
No 236
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.91 E-value=0.00095 Score=65.23 Aligned_cols=29 Identities=31% Similarity=0.563 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
....+.-+.|.||+|+||||+++.++...
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45566778899999999999999999765
No 237
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.91 E-value=0.00057 Score=60.27 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
+..|+|.|+||+||||+++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999886
No 238
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.90 E-value=0.00051 Score=59.96 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH-HhCCcEEEEeC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVAN-EAGINFISVKG 48 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~-~~~~~~~~i~~ 48 (541)
+..|+|.|+||+||||+++.+++ .++ +..++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~ 34 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINR 34 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecH
Confidence 45689999999999999999998 344 344443
No 239
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.89 E-value=0.0009 Score=61.26 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
.+..|+|.|++|+||||+++.+++.+++.++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34679999999999999999999999876553
No 240
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.89 E-value=0.00052 Score=60.99 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
++..|+|.|++|+||||+++.+++.++..++ +..++
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~ 46 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGEL 46 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHH
Confidence 3567999999999999999999999986554 44444
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.88 E-value=0.00072 Score=58.64 Aligned_cols=30 Identities=37% Similarity=0.628 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
..|+|.|+||+||||+++.+ +.++.+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 35889999999999999999 8888876643
No 242
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.87 E-value=0.00059 Score=58.80 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
.|+|.|++|+||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58899999999999999999999987663
No 243
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.87 E-value=0.0011 Score=67.32 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.++|.|++|||||+++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998877
No 244
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=96.86 E-value=0.01 Score=62.01 Aligned_cols=61 Identities=20% Similarity=0.137 Sum_probs=45.9
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEe--cCc-eeEeeCEEEEcCChhH-HHhhh
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTL--NND-QHIEANHVVSALPAPK-LGMLL 363 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~--~~g-~~~~ad~VI~t~P~~~-~~~ll 363 (541)
..+...|.+.+ ..|++|+++++|++|++++++|+|++ .+| .+++||.||.|.-... +.+.+
T Consensus 148 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~l 213 (570)
T 3fmw_A 148 SRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLA 213 (570)
T ss_dssp HHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSCHHHHHT
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCchHHHHc
Confidence 44555555555 34789999999999999988998877 677 6899999999986543 33443
No 245
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.86 E-value=0.00063 Score=61.79 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFI 44 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~ 44 (541)
+.+..|+|.|+||+||||+++.+++.++..++
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 34567999999999999999999999987543
No 246
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=96.86 E-value=0.0074 Score=59.65 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=48.4
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhc
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLH 364 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~ 364 (541)
..+...|.+.+ ..|++|+++++|++|..++++|.|.+.+| .+.||.||+|+-.+. ..+++
T Consensus 150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~-~~l~~ 210 (389)
T 2gf3_A 150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN-SKLLS 210 (389)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH-HHHGG
T ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH-HHHhh
Confidence 46777777777 56789999999999999888899988776 699999999998763 34543
No 247
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.85 E-value=0.00058 Score=61.68 Aligned_cols=30 Identities=33% Similarity=0.577 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
.|+|.|+||+||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998766544
No 248
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.84 E-value=0.0037 Score=64.33 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=32.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~ 49 (541)
|..++.-++|.|+||+|||+++..++... +.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 67778889999999999999999998766 4578888754
No 249
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.84 E-value=0.0013 Score=58.67 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=31.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPEL 51 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l 51 (541)
..++..+.|.||+|+||||+++.++..+ |...+.++..++
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3567789999999999999999999988 555456664433
No 250
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=96.83 E-value=0.034 Score=55.52 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=41.6
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcE--EEEecCce--eEeeCEEEEcCChh
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGV--KVTLNNDQ--HIEANHVVSALPAP 357 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~--~v~~~~g~--~~~ad~VI~t~P~~ 357 (541)
..+...|.+.+ ..|++|+++++|++|..+++++ .|.+.+|+ ++.||.||.|.-..
T Consensus 106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~ 165 (421)
T 3nix_A 106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYG 165 (421)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence 34555555555 3478999999999999887775 45567786 68999999998654
No 251
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.83 E-value=0.00059 Score=61.63 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
.|+|.|+||+||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998776544
No 252
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.80 E-value=0.0011 Score=59.32 Aligned_cols=34 Identities=35% Similarity=0.616 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL 52 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~ 52 (541)
.|+|.||||+||+|.++.+++.++++. ++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 478999999999999999999998754 5655554
No 253
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.80 E-value=0.0023 Score=59.64 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35567778899999999999999998755
No 254
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.79 E-value=0.019 Score=66.15 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=81.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeCcccccc---------------------ccCchHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA-------GINFISVKGPELLNM---------------------YLGESERAVR 64 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~-------~~~~~~i~~~~l~~~---------------------~~~~~~~~~~ 64 (541)
...+-+.|+|+.|+|||+||+.+++.. ...++.++.+..... ........+.
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 224 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAK 224 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHH
Confidence 445668899999999999999887652 233456664431100 0011112222
Q ss_pred HHHHHHHhc--CCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCCC
Q psy7673 65 QCFQRARNS--QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFD 142 (541)
Q Consensus 65 ~~~~~~~~~--~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~~ 142 (541)
..+...... ++.+|+|||++.. . .++.+. .+..||.||+....... .. ...
T Consensus 225 ~~l~~~l~~~~~~~LlvlDd~~~~------------------~---~~~~~~--~~~~ilvTtR~~~~~~~-~~---~~~ 277 (1249)
T 3sfz_A 225 DRLRVLMLRKHPRSLLILDDVWDP------------------W---VLKAFD--NQCQILLTTRDKSVTDS-VM---GPK 277 (1249)
T ss_dssp HHHHHHTSSSSCSCEEEEESCCCH------------------H---HHTTTC--SSCEEEEEESSTTTTTT-CC---SCB
T ss_pred HHHHHHHhccCCCEEEEEecCCCH------------------H---HHHhhc--CCCEEEEEcCCHHHHHh-hc---CCc
Confidence 223222222 3689999999853 1 122222 23477888876543211 11 123
Q ss_pred eEEEecC-CCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhhhhcCCCCHHHHH
Q psy7673 143 RILFVNL-PNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLE 195 (541)
Q Consensus 143 ~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~dl~ 195 (541)
..+.+.. .+.++-.++|........ .........++ +.+.|. |--|+
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~--~~~~gl-PLal~ 325 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSII--KECKGS-PLVVS 325 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHH--HHTTTC-HHHHH
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHH--HHhCCC-HHHHH
Confidence 4577775 899999999988775421 11111244455 666664 43444
No 255
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.79 E-value=0.0019 Score=60.79 Aligned_cols=38 Identities=32% Similarity=0.516 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
.+.-++|.||+|+|||+++..+|+.++..++..|...+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 45568899999999999999999999877766655444
No 256
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.77 E-value=0.0012 Score=58.05 Aligned_cols=34 Identities=18% Similarity=0.036 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVK 47 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~ 47 (541)
...-.+++||+|+|||+.+..++.++ +..+..+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34567889999999999999888876 66666664
No 257
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.76 E-value=0.0028 Score=61.48 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++.-+.|.||+|+||||+++.++...
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34566778899999999999999999755
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.75 E-value=0.0069 Score=57.34 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCcc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGPE 50 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~~ 50 (541)
.++..++|.|++|+||||++..+|..+ |..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 356789999999999999999998765 55777777654
No 259
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=96.72 E-value=0.015 Score=57.71 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=42.9
Q ss_pred HHHHHHHHHhccCCcEEeccceeeEEEEeC-CcEEEEecCceeEeeCEEEEcCChhH
Q psy7673 303 QTIVNTLGEHLSNKVEVKMDTTCTNLEFLE-KGVKVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 303 ~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~-~~~~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
..|.+.|.+.++ .+|+++++|.+++..+ ++++|++.+|++++||.||-|--...
T Consensus 112 ~~L~~~L~~~~~--~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S 166 (412)
T 4hb9_A 112 TELKEILNKGLA--NTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNS 166 (412)
T ss_dssp HHHHHHHHTTCT--TTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred HHHHHHHHhhcc--ceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCc
Confidence 346667777774 3699999999998754 46999999999999999999965543
No 260
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.70 E-value=0.0021 Score=63.09 Aligned_cols=73 Identities=25% Similarity=0.471 Sum_probs=45.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCc-cc--------ccc-ccCchHHHHHHHHHHHHhcCCce
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGP-EL--------LNM-YLGESERAVRQCFQRARNSQPCV 77 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~-~l--------~~~-~~~~~~~~~~~~~~~~~~~~~~i 77 (541)
..++..++|.||+|+||||++++++..+ ...++.+... ++ ... ..+.....+...+..+....|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 4566679999999999999999999866 2444444321 10 000 00001112234455555668999
Q ss_pred EEEcCCc
Q psy7673 78 IFFDEID 84 (541)
Q Consensus 78 l~iDe~d 84 (541)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999984
No 261
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.69 E-value=0.0039 Score=68.08 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=57.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CC----cEEEEeCc-ccc---------ccccCchHHHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA-----GI----NFISVKGP-ELL---------NMYLGESERAVRQCFQRAR 71 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~-----~~----~~~~i~~~-~l~---------~~~~~~~~~~~~~~~~~~~ 71 (541)
....+..++|.||+|+||||++|.++... +. ....+... .++ ..........+......+.
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHH
Confidence 45567789999999999999999987432 21 11111111 111 1111122222222222222
Q ss_pred -hcCCceEEEcCCccccCCCCCCCCCChh-HHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q psy7673 72 -NSQPCVIFFDEIDALCPKRSSLGDNNSS-MRIVNQLLTEMDGFEGRGGVFLMAATNRPDI 130 (541)
Q Consensus 72 -~~~~~il~iDe~d~l~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~ 130 (541)
...|++|+|||.-.-. +... ..+...+++.+.. ..+..+|.+|+..+.
T Consensus 749 ~a~~p~LlLLDEP~~Gl--------D~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el 798 (918)
T 3thx_B 749 KATSQSLVILDELGRGT--------STHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPV 798 (918)
T ss_dssp HCCTTCEEEEESTTTTS--------CHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGG
T ss_pred hccCCCEEEEeCCCCCC--------CHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHH
Confidence 4578999999975432 1122 2333355554421 224578888887553
No 262
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.69 E-value=0.0023 Score=62.08 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+-|.||+|+||||+++.++...
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45667778999999999999999998755
No 263
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.67 E-value=0.0016 Score=57.52 Aligned_cols=31 Identities=26% Similarity=0.199 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA---GINFISVK 47 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~ 47 (541)
.|.|.|++|+||||+++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 88887665
No 264
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.67 E-value=0.0011 Score=58.47 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeCcc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAG---INFISVKGPE 50 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~~~~ 50 (541)
.|+|.|+||+||||+++.+++.++ .++..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 588999999999999999999885 3455555433
No 265
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.67 E-value=0.0014 Score=59.44 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
.+..+.|.||+|+||||+++.+++.+++.++ +...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~--d~g~~ 43 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYL--DTGAM 43 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCCcH
Confidence 3457999999999999999999999987654 44443
No 266
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.65 E-value=0.0014 Score=58.41 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEeC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA-GINFISVKG 48 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~-~~~~~~i~~ 48 (541)
.+..|.|.|++|+||||+++.+++.+ +.+++.++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 45679999999999999999999998 577776653
No 267
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.65 E-value=0.0017 Score=58.98 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
+..+.|.|++|+||||+++.++..++++++ +..++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i 39 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAI 39 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCcce
Confidence 357899999999999999999999987554 44443
No 268
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.63 E-value=0.0014 Score=60.38 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
+..+.|.|++|+||||+++.++..++.+++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 67899999999999999999999999876643
No 269
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.62 E-value=0.0016 Score=58.72 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
.|+|.|+||+||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998766543
No 270
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.61 E-value=0.004 Score=55.27 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKG 48 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~ 48 (541)
..-.+++|+.|+|||+.+..++.++ +..++.+..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 3446689999999999998888766 777777753
No 271
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.59 E-value=0.0022 Score=59.39 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc--------EEEEeCccccc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGIN--------FISVKGPELLN 53 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~--------~~~i~~~~l~~ 53 (541)
..+..|.|.|++|+||||+++.+++.++.+ ++.+++.++..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 345678999999999999999999998875 45678777754
No 272
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.56 E-value=0.002 Score=56.95 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA---GINFISVK 47 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~ 47 (541)
-|.|.|++|+||||+++.+++.+ +.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 37899999999999999999998 88887654
No 273
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.55 E-value=0.002 Score=62.19 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=47.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeCccccc-----c---ccCchHHHHHHHHHHHHhcCCceEEEcC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGPELLN-----M---YLGESERAVRQCFQRARNSQPCVIFFDE 82 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~--~~~~~i~~~~l~~-----~---~~~~~~~~~~~~~~~~~~~~~~il~iDe 82 (541)
.++..++|.||+|+||||++++++..+. ...+.++...... . +........+..+..+....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 3556799999999999999999998773 3345555322110 0 1100122344555666677899999999
Q ss_pred Ccc
Q psy7673 83 IDA 85 (541)
Q Consensus 83 ~d~ 85 (541)
.-.
T Consensus 249 ~~~ 251 (330)
T 2pt7_A 249 LRS 251 (330)
T ss_dssp CCS
T ss_pred CCh
Confidence 754
No 274
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.55 E-value=0.026 Score=58.69 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=68.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH----HhCC---cEEEEeCcccc--c----------ccc-----------Cc-hHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVAN----EAGI---NFISVKGPELL--N----------MYL-----------GE-SERA 62 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~----~~~~---~~~~i~~~~l~--~----------~~~-----------~~-~~~~ 62 (541)
..+.+.|+|+.|+|||++|+.+++ .... ..+.++.+... + ... .. ....
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 456788999999999999999997 2321 12334433311 0 000 00 0111
Q ss_pred HHHHHHHHHhcC-CceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCC
Q psy7673 63 VRQCFQRARNSQ-PCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRF 141 (541)
Q Consensus 63 ~~~~~~~~~~~~-~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~l~~~l~~~~r~ 141 (541)
+...+...-..+ +.+|+|||++... .. .+.. . .+..||.||+..... ... . ..
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~~~-------------~~--~~~~-~------~gs~ilvTTR~~~v~-~~~-~--~~ 284 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQEE-------------TI--RWAQ-E------LRLRCLVTTRDVEIS-NAA-S--QT 284 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECCHH-------------HH--HHHH-H------TTCEEEEEESBGGGG-GGC-C--SC
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCch-------------hh--cccc-c------CCCEEEEEcCCHHHH-HHc-C--CC
Confidence 222233332333 6899999997641 11 1111 1 234677777753211 111 0 12
Q ss_pred CeEEEecCCCHHHHHHHHHHHH
Q psy7673 142 DRILFVNLPNEQDRKEILLALT 163 (541)
Q Consensus 142 ~~~i~~~~p~~~~r~~il~~~~ 163 (541)
...+.++..+.++-.+++....
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTS
T ss_pred CeEEECCCCCHHHHHHHHHHHh
Confidence 3568899999999999988774
No 275
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=96.54 E-value=0.023 Score=55.99 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=45.7
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEE-EEecCceeEeeCEEEEcCChhH
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVK-VTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~-v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
..+..+|.+.+ ..|++|+++++|++|..++++|. |++.+| ++.||.||+|+-.+.
T Consensus 149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence 56667777766 56789999999999999888887 888777 799999999997763
No 276
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.54 E-value=0.0019 Score=59.62 Aligned_cols=31 Identities=26% Similarity=0.588 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFI 44 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~ 44 (541)
.+..+.|.||+|+||||+++.+++.++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4678999999999999999999999987543
No 277
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.54 E-value=0.0019 Score=57.58 Aligned_cols=28 Identities=18% Similarity=0.502 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFI 44 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~ 44 (541)
.|.|.|++|+||||+++.+++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999998655
No 278
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.54 E-value=0.012 Score=60.82 Aligned_cols=110 Identities=21% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccc----------------------cc----c--Cch
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLN----------------------MY----L--GES 59 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~----------------------~~----~--~~~ 59 (541)
+..++..++|.|++|+|||++++.++... +.+++++...+-.. .+ . -..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45677789999999999999999998765 44556665432100 00 0 012
Q ss_pred HHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q psy7673 60 ERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP 128 (541)
Q Consensus 60 ~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~ 128 (541)
....+.++..+...+|.+|+||=+..|..... .......+..++..+. . .++.+|.+++..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~----~~~~~~~i~~ll~~l~---~-~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGVS----NNAFRQFVIGVTGYAK---Q-EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSC----HHHHHHHHHHHHHHHH---H-TTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhCC----hHHHHHHHHHHHHHHH---h-CCCEEEEEECcc
Confidence 34455566666678899999996666543211 0113344444555443 2 245566666554
No 279
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.53 E-value=0.0018 Score=58.75 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
.|+|.|++|+||||+++.+++.++..+ ++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE--EchHHH
Confidence 478999999999999999999998654 444343
No 280
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=96.53 E-value=0.1 Score=51.42 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=42.0
Q ss_pred HHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEE-EEe---cCceeEeeCEEEEcCChhH
Q psy7673 304 TIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVK-VTL---NNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 304 ~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~-v~~---~~g~~~~ad~VI~t~P~~~ 358 (541)
.+.+.|.+.+ ..|++|+++++|++|..++++|. |++ +++.++.||.||.|.-...
T Consensus 103 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~a~~vV~A~G~~s 162 (397)
T 3cgv_A 103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHhCCCEEEECCEEEEEEEeCCEEEEEEEEECCeEEEEEcCEEEECCCcch
Confidence 4556666655 45789999999999999888776 665 3556899999999986543
No 281
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.53 E-value=0.01 Score=61.31 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=65.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHH--HHHh--CCcEEEEeCccccc------ccc------------------------
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAV--ANEA--GINFISVKGPELLN------MYL------------------------ 56 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~--a~~~--~~~~~~i~~~~l~~------~~~------------------------ 56 (541)
+..++..++|.||+|+||||+++.+ +... +...++++..+... ...
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Confidence 4667888999999999999999994 3333 44456665432100 000
Q ss_pred ----C--chHHHHHHHHHHHHhcCCceEEEcCCccccCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q psy7673 57 ----G--ESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI 130 (541)
Q Consensus 57 ----~--~~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t~~~~~~ 130 (541)
. ................+|.+|+|||.-.+.+.. .......+.+..++..+. . .++.+|.++++.+.
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~---~lD~~~~~~l~~ll~~l~---~-~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY---DASSVVRRELFRLVARLK---Q-IGATTVMTTERIEE 187 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT---CCHHHHHHHHHHHHHHHH---H-HTCEEEEEEECSSS
T ss_pred hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc---CCHHHHHHHHHHHHHHHH---H-CCCEEEEEecCCCC
Confidence 0 012234445555566778999999997765431 111223334444444443 2 24567777777655
Q ss_pred C
Q psy7673 131 I 131 (541)
Q Consensus 131 l 131 (541)
+
T Consensus 188 ~ 188 (525)
T 1tf7_A 188 Y 188 (525)
T ss_dssp S
T ss_pred c
Confidence 4
No 282
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.53 E-value=0.0014 Score=57.89 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
.+...|.|+|++||||||+++.+++.+|++++ ++.++
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~ 46 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRI 46 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHH
Confidence 44556889999999999999999998887665 55444
No 283
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.52 E-value=0.0013 Score=62.83 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGP 49 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~ 49 (541)
+..|+|.||+|+|||+++..+|+.++..++..|..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 35789999999999999999999998877665544
No 284
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.49 E-value=0.0014 Score=58.57 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
.+.|.|++|+||||+++.++. ++++++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 588999999999999999999 87665543
No 285
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.47 E-value=0.002 Score=56.30 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
.+.-+.|.||+|+||||+++.++..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 445788999999999999999998764
No 286
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.46 E-value=0.0024 Score=59.12 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
++..+.|.||+|+||||+++.+++.+++.++ +...+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i 61 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL--DSGAI 61 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCce
Confidence 3457889999999999999999999988654 44443
No 287
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.43 E-value=0.0032 Score=56.41 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGIN 42 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~ 42 (541)
+.-|+|.|++|+||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4578999999999999999999998763
No 288
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.42 E-value=0.003 Score=59.52 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKG 48 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~ 48 (541)
+.-++|.||+|+|||+++..+|+.++..++..|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 3457899999999999999999998766554443
No 289
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.42 E-value=0.0026 Score=55.61 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGIN 42 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~ 42 (541)
+-|+|+||+|+||||+++.+.++..-.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 448999999999999999999887543
No 290
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.39 E-value=0.0019 Score=57.68 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
..+..++|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3556789999999999999999999874
No 291
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.37 E-value=0.0031 Score=56.35 Aligned_cols=29 Identities=34% Similarity=0.588 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
.+.|.|++|+||||+++.++..++++++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 68899999999999999999999976664
No 292
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.36 E-value=0.0087 Score=65.55 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
....+.-++|.||+|+||||++|.++.
T Consensus 658 ~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 658 EKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp ETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344566799999999999999999953
No 293
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.35 E-value=0.011 Score=62.01 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++++|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4579999999999999988876554
No 294
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.31 E-value=0.0013 Score=59.12 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGI 41 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~ 41 (541)
.+.-|+|.|++|+||||+++.+++.++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4567999999999999999999998743
No 295
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.30 E-value=0.0053 Score=60.05 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKG 48 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~ 48 (541)
+.-++|.||+|+|||+++..++..++..++..|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4467899999999999999999999876654443
No 296
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.29 E-value=0.0028 Score=56.34 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
.+..|.|.|++|+||||+++.+++. +.+++ +..++
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~ 41 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDAL 41 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHH
Confidence 3557899999999999999999997 66554 55444
No 297
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.27 E-value=0.0027 Score=56.74 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
..+.|.|++|+||||+++.++. +|.+++ +..++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 3578999999999999999987 777655 54443
No 298
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.25 E-value=0.0025 Score=57.15 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
.++.-+.|.||+|+||||+++.++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3566788999999999999999998874
No 299
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.20 E-value=0.0043 Score=56.77 Aligned_cols=37 Identities=22% Similarity=0.473 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
..+..+.|.|++|+||||+++.++..++++++ +..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~--d~d~~ 50 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAM 50 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCcee--cCCCe
Confidence 45567899999999999999999999997654 44443
No 300
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.20 E-value=0.02 Score=54.82 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
...++..++|.|++|+||||++..+|..+ +..+..+++.
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34567789999999999999999998766 6777777764
No 301
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.18 E-value=0.0039 Score=52.97 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=25.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||.|+||||+++.++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45667779999999999999999999987
No 302
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.18 E-value=0.0041 Score=56.09 Aligned_cols=34 Identities=38% Similarity=0.465 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
+..|.|.|++|+||||+++.++. ++.+++ +...+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~i--d~D~~ 37 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVI--DADII 37 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEE--EccHH
Confidence 45789999999999999999998 776544 44443
No 303
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.17 E-value=0.017 Score=55.49 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKG 48 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~ 48 (541)
..++..+.|.||+|+||||+++.++..+ +..+....+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 3567789999999999999999999876 445554443
No 304
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.15 E-value=0.0043 Score=55.66 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=31.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCcc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGPE 50 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~~ 50 (541)
...++..++|.|++|+||||+++.++..+ |.+++.++...
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34566789999999999999999999876 45677777543
No 305
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.14 E-value=0.021 Score=57.48 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKG 48 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~ 48 (541)
....+..+.|.|++|+||||+++.++..+ +..+...++
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~ 329 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG 329 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecC
Confidence 45567789999999999999999999876 445544433
No 306
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.12 E-value=0.0032 Score=62.97 Aligned_cols=33 Identities=27% Similarity=0.441 Sum_probs=27.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFI 44 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~ 44 (541)
.+.+.-|+|+|+||+||||+++.+++.+++.++
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 345567899999999999999999998876443
No 307
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.10 E-value=0.0038 Score=56.04 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
.+..|+|.|++|+||||+++.+++.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999873
No 308
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.09 E-value=0.0032 Score=60.39 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVK 47 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~ 47 (541)
..|+|.||+|+|||++++.++..++..++..|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46889999999999999999999986554444
No 309
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.08 E-value=0.0023 Score=57.27 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
..++..+.|.|++|+||||+++.++..+. .+..++..++
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-~~~~i~~D~~ 56 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLP-NCSVISQDDF 56 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTST-TEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcC-CcEEEeCCcc
Confidence 34556788999999999999999998762 2344555444
No 310
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=96.07 E-value=0.42 Score=49.84 Aligned_cols=57 Identities=26% Similarity=0.316 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc-EE-EEec------Cc---------eeEeeCEEEEcCChhH
Q psy7673 302 LQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG-VK-VTLN------ND---------QHIEANHVVSALPAPK 358 (541)
Q Consensus 302 ~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~-~~-v~~~------~g---------~~~~ad~VI~t~P~~~ 358 (541)
...+.+.|.+.+ +.|++|+++++|.+|.+++++ +. |.+. +| .++.||.||.|.-...
T Consensus 143 r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S 217 (584)
T 2gmh_A 143 LGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG 217 (584)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence 356777777777 458899999999999987643 43 6654 23 5789999999986643
No 311
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.07 E-value=0.0033 Score=55.80 Aligned_cols=27 Identities=41% Similarity=0.676 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
++..+.|.||+|+||||+++.++..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999998764
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.07 E-value=0.0046 Score=54.30 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcc
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPE 50 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~ 50 (541)
..++|.||+|+||||+++.++...+.. +.++..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~d~ 36 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNS-AYIEGDI 36 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSE-EEEEHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCe-EEEcccc
Confidence 357899999999999999999866442 4455433
No 313
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.06 E-value=0.0035 Score=55.02 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
+-+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998763
No 314
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.05 E-value=0.0044 Score=55.19 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
++.-+.|.||+|+||||+++.++..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456688999999999999999998864
No 315
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.04 E-value=0.0034 Score=59.13 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
+..|.|.|++|+||||+++.++ .+++++ +++..+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~ 108 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHL 108 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHH
Confidence 4568999999999999999999 677655 455444
No 316
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.04 E-value=0.0043 Score=55.34 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.++..+.|.||+|+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456678999999999999999999876
No 317
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.04 E-value=0.0057 Score=54.75 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPE 50 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~ 50 (541)
.++..+.|.||+|+||||+++.++..++-.+..++...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~ 41 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDH 41 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCc
Confidence 34556889999999999999999998763344555443
No 318
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.03 E-value=0.0047 Score=55.71 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
+..+.|.|++|+|||++++.++..++++++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 4568999999999999999999999876553
No 319
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.03 E-value=0.039 Score=50.24 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVA 36 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a 36 (541)
.+..+++.||+|+|||+++..+.
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 35689999999999998777664
No 320
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.03 E-value=0.0044 Score=54.59 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
.+.-+.|.||+|+||||+++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455688999999999999999998865
No 321
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.01 E-value=0.0014 Score=62.99 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
..+++|+|++|+||||+++.++..++.+++.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 3569999999999999999999999877654
No 322
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.01 E-value=0.014 Score=58.10 Aligned_cols=72 Identities=22% Similarity=0.318 Sum_probs=42.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeCc-ccc-c-----cccCchHHHHHHHHHHHHhcCCceEEEcC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG---INFISVKGP-ELL-N-----MYLGESERAVRQCFQRARNSQPCVIFFDE 82 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~~~-~l~-~-----~~~~~~~~~~~~~~~~~~~~~~~il~iDe 82 (541)
.+...++|.||+|+||||++++++..+. .+++.+.-. ++. . .........+...+..+....|.++++.|
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 3444688999999999999999998873 344444321 110 0 00011111223344444556789999988
Q ss_pred Cc
Q psy7673 83 ID 84 (541)
Q Consensus 83 ~d 84 (541)
+-
T Consensus 245 iR 246 (418)
T 1p9r_A 245 IR 246 (418)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 323
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.97 E-value=0.0084 Score=53.24 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPE 50 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~ 50 (541)
..+.-+.|.|++|+||||+++.++..+ +.+++.++...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 445568899999999999999999876 66676665443
No 324
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.96 E-value=0.018 Score=54.45 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=47.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc--------------------ccCchHHHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM--------------------YLGESERAVRQCFQRAR 71 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~--------------------~~~~~~~~~~~~~~~~~ 71 (541)
+..+++.|++|+||||++..+|..+ +..+..+++.-.... ........+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889999999999999999776 677888876522110 00112223345556665
Q ss_pred hcCCceEEEcCCccc
Q psy7673 72 NSQPCVIFFDEIDAL 86 (541)
Q Consensus 72 ~~~~~il~iDe~d~l 86 (541)
.....+++||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 456789999975443
No 325
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.94 E-value=0.023 Score=56.79 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
.+..++|.|++|+||||++..++..+ +..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45689999999999999999999876 5778888775
No 326
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.94 E-value=0.0044 Score=55.89 Aligned_cols=29 Identities=34% Similarity=0.604 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++.-+.|.||+|+||||+++.++..+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45566778999999999999999999877
No 327
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.93 E-value=0.024 Score=62.07 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH------hCCcEEEEeCc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANE------AGINFISVKGP 49 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~------~~~~~~~i~~~ 49 (541)
..+-+.|+|+.|+|||++|+.+++. .+..++.++.+
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs 190 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECC
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeC
Confidence 4567899999999999999999853 24445555544
No 328
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.92 E-value=0.019 Score=61.94 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
..+..++|+||+|+||||++|.++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45667999999999999999999864
No 329
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.92 E-value=0.032 Score=49.76 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
..++++.+|+|+|||.++-.++...
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 3679999999999999988776643
No 330
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=95.92 E-value=0.34 Score=47.41 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=37.0
Q ss_pred HHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEe--cCc--eeEeeCEEEEcCChh
Q psy7673 304 TIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTL--NND--QHIEANHVVSALPAP 357 (541)
Q Consensus 304 ~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~--~~g--~~~~ad~VI~t~P~~ 357 (541)
.+-..|++.. ..|++++++++|..+..+++.+.... .++ .+++||.||-|--..
T Consensus 103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~ 161 (397)
T 3oz2_A 103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFE 161 (397)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTT
T ss_pred HHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCccc
Confidence 3444555544 45789999999999998877654322 233 367899999997544
No 331
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.91 E-value=0.0034 Score=54.85 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
.+..++|.||+|+|||+++..++++.+ +++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIs 63 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIA 63 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEe
Confidence 456799999999999999999998765 4443
No 332
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.88 E-value=0.0057 Score=62.56 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=45.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeCcc-cccc-----------ccCchHHHHHHHHHHHHhcCCceE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGPE-LLNM-----------YLGESERAVRQCFQRARNSQPCVI 78 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~--~~~~~i~~~~-l~~~-----------~~~~~~~~~~~~~~~~~~~~~~il 78 (541)
..+.+++|.||+|+||||++++++..+. ...+.+.... +... ..+.....+...+..+....|.++
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~i 337 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYI 337 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeE
Confidence 4566799999999999999999998773 4455554322 2100 000111123334445556789999
Q ss_pred EEcCCc
Q psy7673 79 FFDEID 84 (541)
Q Consensus 79 ~iDe~d 84 (541)
+++|+-
T Consensus 338 ivgEir 343 (511)
T 2oap_1 338 IVGEVR 343 (511)
T ss_dssp EESCCC
T ss_pred EeCCcC
Confidence 999973
No 333
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.88 E-value=0.0052 Score=54.96 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
.++..+.|.||+|+||||+++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556788999999999999999998874
No 334
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.88 E-value=0.023 Score=57.80 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=46.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc--------------------ccCchHHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM--------------------YLGESERAVRQCFQR 69 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~--------------------~~~~~~~~~~~~~~~ 69 (541)
..+..|+|.|++|+||||++..++..+ +.++..+++...... ............+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 446689999999999999999999766 677887776321100 001112222344555
Q ss_pred HHhcCCceEEEcCCccc
Q psy7673 70 ARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 70 ~~~~~~~il~iDe~d~l 86 (541)
+......+++||-.-.+
T Consensus 179 ~~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHHTTCCEEEEEECCCC
T ss_pred HHHCCCcEEEEeCCCCc
Confidence 54456689999976554
No 335
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.87 E-value=0.0053 Score=58.43 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-CCc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA-GIN 42 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~-~~~ 42 (541)
+..|+|.|+||+||||+++.+++.+ +..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~ 30 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY 30 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcE
Confidence 3568999999999999999999874 443
No 336
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=95.86 E-value=0.061 Score=54.20 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=46.4
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEE---------------eCCc-EEEEecCceeE--eeCEEEEcCChhHHHhhh
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEF---------------LEKG-VKVTLNNDQHI--EANHVVSALPAPKLGMLL 363 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~---------------~~~~-~~v~~~~g~~~--~ad~VI~t~P~~~~~~ll 363 (541)
..+..+|.+.+ ..|++|+++++|++|.. ++++ +.|.+.+| ++ .||.||+|+-++. .+++
T Consensus 181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s-~~l~ 258 (448)
T 3axb_A 181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS-NRLL 258 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH-HHHH
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH-HHHH
Confidence 46777777777 56889999999999987 5555 46777777 68 9999999998763 3454
Q ss_pred c
Q psy7673 364 H 364 (541)
Q Consensus 364 ~ 364 (541)
+
T Consensus 259 ~ 259 (448)
T 3axb_A 259 N 259 (448)
T ss_dssp G
T ss_pred H
Confidence 4
No 337
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.82 E-value=0.031 Score=52.88 Aligned_cols=73 Identities=23% Similarity=0.165 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc----------------cc----CchHHHHHHHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM----------------YL----GESERAVRQCFQRA 70 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~----------------~~----~~~~~~~~~~~~~~ 70 (541)
++..+.+.|++|+||||++..+|..+ +..+..+++.-.... .. .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 56678888999999999999998766 667777775321100 00 01122234455555
Q ss_pred HhcCCceEEEcCCccc
Q psy7673 71 RNSQPCVIFFDEIDAL 86 (541)
Q Consensus 71 ~~~~~~il~iDe~d~l 86 (541)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5467789999997443
No 338
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.82 E-value=0.0061 Score=54.94 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
.++.-+.|.||+|+||||+++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3455688999999999999999998764
No 339
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.80 E-value=0.0066 Score=57.45 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=29.5
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINF 43 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~ 43 (541)
+..+++..+.|+||+|+||||+++.++..+...+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 4778888999999999999999999999874444
No 340
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.79 E-value=0.0078 Score=53.45 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEAGINFI 44 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~~~~~~ 44 (541)
..|.|.|++|||||++++.+|+.++++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 46889999999999999999999999987
No 341
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.76 E-value=0.0066 Score=54.22 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
..++..+.|.||+|+||||+++.++..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45566788999999999999999998874
No 342
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.75 E-value=0.0088 Score=62.32 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGP 49 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~ 49 (541)
.+..|+|+|.+|+||||+++.+++.+ +.+++.++..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 56679999999999999999999998 8998888743
No 343
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.75 E-value=0.03 Score=55.91 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=49.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeCccccccc----------------c----CchHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA----GINFISVKGPELLNMY----------------L----GESERAVRQCFQ 68 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~----~~~~~~i~~~~l~~~~----------------~----~~~~~~~~~~~~ 68 (541)
.+++.+++.|++|+||||++-.+|..+ +..+..+++.-..... . ......+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 456789999999999999999998765 7788888886432110 0 011222345566
Q ss_pred HHHhcCCceEEEcCCccc
Q psy7673 69 RARNSQPCVIFFDEIDAL 86 (541)
Q Consensus 69 ~~~~~~~~il~iDe~d~l 86 (541)
.+......+++||-.-.+
T Consensus 178 ~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHTTCSEEEEECCCCC
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 655456689999975443
No 344
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=95.60 E-value=0.038 Score=57.77 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=42.7
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEe-CCcEEEEec-Cc--eeEeeCEEEEcCChhH
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFL-EKGVKVTLN-ND--QHIEANHVVSALPAPK 358 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~-~~~~~v~~~-~g--~~~~ad~VI~t~P~~~ 358 (541)
..+...|.+.+ ..|++|+.+++|++|..+ ++.+.|++. +| .++.||.||.|.-...
T Consensus 128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 128 EEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence 35566666665 468899999999999875 556778775 66 5789999999986543
No 345
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.58 E-value=0.017 Score=49.46 Aligned_cols=34 Identities=26% Similarity=0.164 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKG 48 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~ 48 (541)
...+.|.|++|+||||++..++..+ +.++..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 4568899999999999999998876 566655554
No 346
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.54 E-value=0.0078 Score=52.00 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcc
Q psy7673 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPE 50 (541)
Q Consensus 18 ~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~ 50 (541)
+|++|++|+|||++++.++.. +.+++++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999987 88888888654
No 347
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.54 E-value=0.025 Score=58.05 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPEL 51 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l 51 (541)
.+.-|+++|.||+||||+++.+++.+ +.+...++..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 34568899999999999999999988 556666665543
No 348
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.53 E-value=0.0092 Score=54.87 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=25.5
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGI 41 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~ 41 (541)
|...++.-+-|.||+|+||||+++.++..++.
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 34556667889999999999999999998764
No 349
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=95.53 E-value=0.095 Score=53.87 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=41.8
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc---EEEEecCce--eEeeCEEEEcCChh
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG---VKVTLNNDQ--HIEANHVVSALPAP 357 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~---~~v~~~~g~--~~~ad~VI~t~P~~ 357 (541)
..+.+.|.+.+ ..|++|+++++|++|..++++ |.+.+.+|+ ++.||.||.|.-..
T Consensus 111 ~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~ 171 (512)
T 3e1t_A 111 ARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNR 171 (512)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTT
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcc
Confidence 35566666665 467899999999999998775 455556674 78999999998664
No 350
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.52 E-value=0.017 Score=49.79 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=26.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVK 47 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~ 47 (541)
....-+.|.|++|+||||+++.+...+ +..+-.+.
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 345678899999999999999998765 44444443
No 351
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.51 E-value=0.0066 Score=57.33 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeCcccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAG---INFISVKGPELL 52 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~~~~l~ 52 (541)
+.-|.|.|++|+||||+++.+++.++ ..+..+++.++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 44688999999999999999998775 556677766654
No 352
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.51 E-value=0.048 Score=60.53 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVA 36 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a 36 (541)
+..++|+||+|+||||++|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 5789999999999999999994
No 353
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=95.47 E-value=0.22 Score=51.09 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=42.4
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc--EEEEecCceeEeeCEEEEcCChhH
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG--VKVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
..+.+.|.+.+ ..|++++.+ +|++|..++++ +.|++.+|+++.||.||.|.-...
T Consensus 173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 230 (511)
T 2weu_A 173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG 230 (511)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence 34555666655 457899999 99999986555 678888887899999999986653
No 354
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=95.46 E-value=0.0095 Score=58.35 Aligned_cols=61 Identities=20% Similarity=0.339 Sum_probs=40.3
Q ss_pred ccccccccccHHHHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcC
Q psy7673 292 KWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSAL 354 (541)
Q Consensus 292 ~~~~~~~~~G~~~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~ 354 (541)
+...+++.||+++|+++|++.++. +|++|++|++|.+.++++.|...+......-+|.+.+
T Consensus 309 ~~~~~~i~GG~~~l~~~l~~~l~~--~i~l~~~V~~I~~~~~gv~v~~~~~~~~~g~~~~~~~ 369 (376)
T 2e1m_A 309 RATYWEIEGGSRMLPETLAKDLRD--QIVMGQRMVRLEYYDPGRDGHHGELTGPGGPAVAIQT 369 (376)
T ss_dssp TCCEEEETTCTTHHHHHHHHHGGG--TEECSEEEEEEEECCCC-------------CCEEEEE
T ss_pred CCceEEECCcHHHHHHHHHHhcCC--cEEecCeEEEEEECCCceEEEeCCCcCCCCCeeEEEe
Confidence 345799999999999999999943 6999999999999888887765443333445565554
No 355
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.44 E-value=0.046 Score=62.85 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
..+++..+.|+||+|+||||+++.+...+
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 56778889999999999999999999877
No 356
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=95.43 E-value=0.34 Score=47.96 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=41.9
Q ss_pred HHHHHHHHhccC--C-cEEeccceeeEEEEeCCcEEEEecC---c--eeEeeCEEEEcCChhH-HHhhh
Q psy7673 304 TIVNTLGEHLSN--K-VEVKMDTTCTNLEFLEKGVKVTLNN---D--QHIEANHVVSALPAPK-LGMLL 363 (541)
Q Consensus 304 ~l~~~l~~~l~~--~-~~i~~~~~V~~I~~~~~~~~v~~~~---g--~~~~ad~VI~t~P~~~-~~~ll 363 (541)
.|.+.|.+.+.. | ++|+++++|++|.. +++|.|++.+ | .++.||.||.|.-... +.+.+
T Consensus 108 ~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l 175 (410)
T 3c96_A 108 ELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHL 175 (410)
T ss_dssp HHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHH
T ss_pred HHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEECCCccchhHHHh
Confidence 455555555521 3 47999999999998 7788887654 6 5789999999986644 33444
No 357
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.37 E-value=0.014 Score=52.64 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCcccc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL 52 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~ 52 (541)
+..-+-|.|+||+||||+++.+++.++++++ +..+++
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdll 43 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQI--STGDML 43 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCee--echHHH
Confidence 3445779999999999999999999987765 444443
No 358
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=95.36 E-value=0.031 Score=56.22 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhc-cCCcEEeccc---eeeEEEEeCCcEE-EEecCceeEeeCEEEEcCChhHHHhhh
Q psy7673 302 LQTIVNTLGEHL-SNKVEVKMDT---TCTNLEFLEKGVK-VTLNNDQHIEANHVVSALPAPKLGMLL 363 (541)
Q Consensus 302 ~~~l~~~l~~~l-~~~~~i~~~~---~V~~I~~~~~~~~-v~~~~g~~~~ad~VI~t~P~~~~~~ll 363 (541)
...+..+|++.+ ..|++|++++ +|++|..++++|. |++.+|+++.||.||+|+-++. ..++
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s-~~l~ 225 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA-GQFL 225 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG-GGTS
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCCh-hhhc
Confidence 356777777777 5689999999 9999999888888 9998998899999999998773 3444
No 359
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.34 E-value=0.019 Score=54.52 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVK 47 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~ 47 (541)
...++..+.|.||+|+||||+++.++..+ +..+....
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45567789999999999999999999876 44444433
No 360
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.31 E-value=0.0017 Score=64.70 Aligned_cols=139 Identities=21% Similarity=0.300 Sum_probs=59.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccccc-cccCc-hHHHHHHHHHHHHhcCCceEEEcCCccccCCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLN-MYLGE-SERAVRQCFQRARNSQPCVIFFDEIDALCPKR 90 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~il~iDe~d~l~~~~ 90 (541)
.++.++||+||||||||++++++|+.++.+++.++++.+.. .+.+. .+..++.+|..+.. ++++||++.+....
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~----~~~~De~d~~~~~~ 123 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK----LVRQQEIAKNRARA 123 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHH----HHHHHHHHSCC---
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHh----cchhhhhhhhhccc
Confidence 36789999999999999999999999999999999999887 47774 78889999988765 44588888775432
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCCCCCeEEEEe-cCCCCCCCccccCCCCCCeEEEecCCCHH-HHHHHHHH
Q psy7673 91 SSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAA-TNRPDIIDPAVMRPGRFDRILFVNLPNEQ-DRKEILLA 161 (541)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vi~t-~~~~~~l~~~l~~~~r~~~~i~~~~p~~~-~r~~il~~ 161 (541)
......++++.|+..++++.....+ +++ ||.++.++++|++++||++.|+++.|+.. .|.+|+..
T Consensus 124 ----~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 124 ----EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ----hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 3345578899999999987665543 455 99999999999999999999999999987 67777654
No 361
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.29 E-value=0.021 Score=54.19 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
++..+.|.||+|+||||+++.++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56788999999999999999999876
No 362
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.26 E-value=0.036 Score=57.10 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.++..+-|.||+|+||||+++.++..+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455668899999999999999999755
No 363
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.23 E-value=0.015 Score=52.73 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG--INFIS 45 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~--~~~~~ 45 (541)
..+.-+.|.|++|+||||+++.+++.++ ..++.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 3556688999999999999999999986 45543
No 364
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.20 E-value=0.0064 Score=55.35 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=19.2
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHH-HHhC
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVA-NEAG 40 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a-~~~~ 40 (541)
|...++.-+.|.||+|+||||+++.++ ..+.
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 344566778999999999999999999 7653
No 365
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.20 E-value=0.054 Score=52.74 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKG 48 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~ 48 (541)
.....+.|.|+||+||||++..++..+ +.++..+++
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 345578999999999999999998876 566655554
No 366
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.19 E-value=0.017 Score=52.05 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFIS 45 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~ 45 (541)
...|.|.|++|||||++++.+|+.++++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3468899999999999999999999998753
No 367
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.18 E-value=0.023 Score=55.47 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=45.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeCc-ccc-----cc--ccC-c-------hHHHHHHHHHHHHhc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGP-ELL-----NM--YLG-E-------SERAVRQCFQRARNS 73 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~--~~~~~i~~~-~l~-----~~--~~~-~-------~~~~~~~~~~~~~~~ 73 (541)
..++..++|.||+|+||||++++++..+. ...+.++.. ++. .. +.. . ....+...+..+...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 44667899999999999999999998773 344555421 111 00 111 0 111234445555566
Q ss_pred CCceEEEcCCc
Q psy7673 74 QPCVIFFDEID 84 (541)
Q Consensus 74 ~~~il~iDe~d 84 (541)
.|..++++|+.
T Consensus 252 ~pd~~l~~e~r 262 (361)
T 2gza_A 252 KPTRILLAELR 262 (361)
T ss_dssp CCSEEEESCCC
T ss_pred CCCEEEEcCch
Confidence 78999999974
No 368
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.18 E-value=0.066 Score=53.15 Aligned_cols=73 Identities=23% Similarity=0.165 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcccccc----------------cc----CchHHHHHHHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNM----------------YL----GESERAVRQCFQRA 70 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~----------------~~----~~~~~~~~~~~~~~ 70 (541)
++..+++.|++|+||||++..+|..+ +..+..+++.-.... +. ..........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999999877 667777776422110 00 01122234455555
Q ss_pred HhcCCceEEEcCCccc
Q psy7673 71 RNSQPCVIFFDEIDAL 86 (541)
Q Consensus 71 ~~~~~~il~iDe~d~l 86 (541)
+.....+++||=.-.+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 4455689999865443
No 369
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.16 E-value=0.0089 Score=52.95 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHH-HHHHHHHHh---CCcEEEEe
Q psy7673 14 TPSGVLLCGPPGCGKTL-LAKAVANEA---GINFISVK 47 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~-l~~~~a~~~---~~~~~~i~ 47 (541)
.+.-.+++|+.|+|||+ +++.+ .++ +..++.+.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~-~r~~~~g~kvli~k 63 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL-RRGIYAKQKVVVFK 63 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH-HHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHH-HHHHHcCCceEEEE
Confidence 34557789999999999 55554 433 56665554
No 370
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.15 E-value=0.0086 Score=54.65 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++...
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 46677789999999999999999998755
No 371
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.15 E-value=0.028 Score=53.58 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=29.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEeCccc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG-----INFISVKGPEL 51 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~-----~~~~~i~~~~l 51 (541)
..+.-+.|.||+|+||||+++.++..++ ..+..+....+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 3455688999999999999999998874 24555555443
No 372
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.11 E-value=0.023 Score=55.13 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVK 47 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~ 47 (541)
...++..+.|.||+|+||||+++.++..+ +..+....
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 45567789999999999999999999876 44544443
No 373
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.11 E-value=0.055 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=17.9
Q ss_pred CcEEEEEcCCCCcHHHHHH-HHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAK-AVANE 38 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~-~~a~~ 38 (541)
.+++++.+|+|+|||..+- .+...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 3579999999999998743 33343
No 374
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.08 E-value=0.014 Score=51.24 Aligned_cols=23 Identities=43% Similarity=0.715 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999876
No 375
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.08 E-value=0.061 Score=58.12 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
+..+++.||+|+|||+++..+...
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999988777544
No 376
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.04 E-value=0.0084 Score=54.77 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46677789999999999999999998765
No 377
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.00 E-value=0.015 Score=49.49 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
...++||.|+||+|||+++..+.++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4578999999999999999999874
No 378
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.99 E-value=0.019 Score=59.61 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeCcc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG----INFISVKGPE 50 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~----~~~~~i~~~~ 50 (541)
+.+..|+|.|.+|+||||+++.+++.++ .+++.++...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 3456789999999999999999999885 7788887543
No 379
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.99 E-value=0.0072 Score=54.16 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
-|.|.|++|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.94 E-value=0.019 Score=54.17 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=29.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEE-eCccc
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGI-----NFISV-KGPEL 51 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~-----~~~~i-~~~~l 51 (541)
...+.-+.|.|++|+||||+++.++..++. +.+.+ ...++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 345567889999999999999999988742 23444 65554
No 381
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.93 E-value=0.0084 Score=54.25 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++...
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35566778899999999999999998755
No 382
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.89 E-value=0.019 Score=54.73 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...+.-+.|.||+|+||||+++.++..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3556678899999999999999999877
No 383
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.88 E-value=0.031 Score=53.23 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEeCcc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG-----INFISVKGPE 50 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~-----~~~~~i~~~~ 50 (541)
..+.-+-|.||+|+||||+++.++..++ ..+..+++..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 4555688999999999999999998765 2355555444
No 384
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.83 E-value=0.049 Score=56.94 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
..+++..+.|.||+|+||||+++.++..+
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45677789999999999999999998766
No 385
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.82 E-value=0.0099 Score=54.55 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=25.5
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
|...++..+.|.||+|+||||+++.++..+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346677789999999999999999998754
No 386
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.78 E-value=0.012 Score=54.60 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45667778999999999999999998765
No 387
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.73 E-value=0.065 Score=56.82 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=33.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCccccccccCchHHHHHHHHHHHHhcCCceEEEc
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCVIFFD 81 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 81 (541)
-.||.||||||||+++-.+...+ +.++..+..+ ...+..+.+.+......++-+-
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T----------N~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS----------NIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS----------HHHHHHHHHHHHHTTCCEEECS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc----------hHHHHHHHHHHHhcCCceEEec
Confidence 56899999999998766555444 5555544433 2344455555554444555543
No 388
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.72 E-value=0.066 Score=54.34 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEe
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAG---INFISVK 47 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~---~~~~~i~ 47 (541)
.+..|++.|.||+||||+++.+++.++ .+...++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 455799999999999999999999873 4455555
No 389
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.71 E-value=0.015 Score=53.19 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=23.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...+ ..+.|.||+|+||||+++.++...
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456 778899999999999999999765
No 390
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.68 E-value=0.084 Score=50.90 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
....+..+.|.|+||+||||+++.++..+
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 35566678899999999999999998765
No 391
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.68 E-value=0.012 Score=54.91 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45677789999999999999999998765
No 392
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.68 E-value=0.016 Score=53.97 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
...++..+.|.||+|+||||+++.++..
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4566778899999999999999999975
No 393
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.66 E-value=0.01 Score=53.90 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45567788999999999999999998765
No 394
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=94.66 E-value=0.05 Score=54.26 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=48.1
Q ss_pred ccHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhH
Q psy7673 300 GGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 300 ~G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
.....+.+.|.+.+ ..|++|+++++|++|..++++|.|.+.+| ++.||+||+|+-...
T Consensus 129 ~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S 187 (417)
T 3v76_A 129 HSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKS 187 (417)
T ss_dssp SCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence 34566777777777 45789999999999999888899999888 799999999986653
No 395
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.65 E-value=0.014 Score=54.19 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45567778999999999999999998765
No 396
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.64 E-value=0.011 Score=53.09 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566678899999999999999998765
No 397
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=94.63 E-value=0.25 Score=51.10 Aligned_cols=55 Identities=11% Similarity=0.203 Sum_probs=41.6
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc--EEEEecCceeEeeCEEEEcCChhH
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG--VKVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
..+.+.|.+.+ ..|++++.+ .|++|..++++ +.|++.+|+++.||.||.|.-...
T Consensus 165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s 222 (538)
T 2aqj_A 165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRG 222 (538)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCch
Confidence 44555565555 457899999 89999886554 577788887899999999986653
No 398
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.63 E-value=0.1 Score=56.00 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
+..++|.||+|+||||++|.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 567899999999999999999864
No 399
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=94.62 E-value=0.06 Score=52.63 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=47.6
Q ss_pred HHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChhHHHhhhc
Q psy7673 303 QTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLH 364 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~ 364 (541)
..+.++|.+.+ ..|++|+++++|++|..++++|.|.+.+| .+.||.||+|+.++. ..+++
T Consensus 149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s-~~l~~ 209 (372)
T 2uzz_A 149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWV-KDLLP 209 (372)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGG-GGTST
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccH-Hhhcc
Confidence 45666676666 56789999999999999888899988888 499999999998763 34443
No 400
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.60 E-value=0.013 Score=54.39 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 46677789999999999999999998754
No 401
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.58 E-value=0.041 Score=49.17 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVK 47 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~ 47 (541)
.+.-|.|.|++|+||||+++.+++.+ +.+++...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 34567889999999999999999888 45555443
No 402
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.57 E-value=0.015 Score=53.61 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
...++..+.|.||+|+||||+++.++..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556777899999999999999999974
No 403
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.57 E-value=0.012 Score=54.37 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566678899999999999999998765
No 404
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.56 E-value=0.015 Score=53.73 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45677788999999999999999998765
No 405
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.56 E-value=0.083 Score=60.72 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
..+++..+-|+|++|+||||+++.+.+.+
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 57788889999999999999999998765
No 406
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.55 E-value=0.013 Score=54.83 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++.-+.|.||+|+||||+++.++..+
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34566778999999999999999998755
No 407
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.54 E-value=0.013 Score=53.90 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45567778999999999999999998765
No 408
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.51 E-value=0.013 Score=53.59 Aligned_cols=29 Identities=31% Similarity=0.275 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566778899999999999999998765
No 409
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.49 E-value=0.016 Score=53.97 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 46677789999999999999999998755
No 410
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.47 E-value=0.012 Score=54.14 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
...++..+.|.||+|+||||+++.++..+.
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 455677789999999999999999987653
No 411
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.46 E-value=0.017 Score=57.65 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.+..++|+|++|+|||+|++.++...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45578999999999999999887654
No 412
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.42 E-value=0.017 Score=59.52 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeCccc
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG----INFISVKGPEL 51 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~----~~~~~i~~~~l 51 (541)
..+..+.|.|++|+||||++++++..++ ..+..++...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 3556789999999999999999999884 34556776554
No 413
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.41 E-value=0.019 Score=55.73 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
....+.-+.|.||+|+||||+++.++...
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45566778899999999999999999765
No 414
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.41 E-value=0.019 Score=55.64 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
....+.-+.|.||+|+||||+++.++...
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 25 EVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45566778899999999999999999765
No 415
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.40 E-value=0.027 Score=57.28 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGI 41 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~ 41 (541)
.+..|+|.|.+|+||||+++++++.++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4467999999999999999999999974
No 416
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.39 E-value=0.032 Score=51.05 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
+.-|.|.|++|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999999984
No 417
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=94.36 E-value=2 Score=44.50 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=42.2
Q ss_pred HHHHHHHHhc-cCCcEEeccceeeEEEEeCCc-EEEEec---Cc--eeEeeCEEEEcCChhHHHhhh
Q psy7673 304 TIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG-VKVTLN---ND--QHIEANHVVSALPAPKLGMLL 363 (541)
Q Consensus 304 ~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~-~~v~~~---~g--~~~~ad~VI~t~P~~~~~~ll 363 (541)
.+..++++.+ ..|++|+.+++|++|..++++ |.|+.. +| ..+.||.||+|+-++ ...++
T Consensus 189 ~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~w-s~~l~ 254 (571)
T 2rgh_A 189 RLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPW-VDKVR 254 (571)
T ss_dssp HHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGG-HHHHH
T ss_pred HHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChh-HHHHH
Confidence 4566666655 568899999999999987765 345431 23 368999999999877 33444
No 418
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.35 E-value=0.02 Score=55.82 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
....+.-+.|.||+|+||||+++.++...
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45566778899999999999999999765
No 419
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.34 E-value=0.017 Score=55.84 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++.-+.|.||+|+||||+++.++...
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34566678899999999999999999765
No 420
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.31 E-value=0.015 Score=54.43 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34566778999999999999999998765
No 421
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.31 E-value=0.017 Score=55.84 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++.-+.|.||+|+||||+++.++...
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 45566778899999999999999999765
No 422
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.29 E-value=0.025 Score=52.68 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.++.|.||+|+||||+++.++...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999876
No 423
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.29 E-value=0.02 Score=51.01 Aligned_cols=27 Identities=44% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
..++..+.|.||+|+||||+++.++..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 445667889999999999999999865
No 424
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=94.26 E-value=1.5 Score=46.29 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=42.3
Q ss_pred HHHHHHHHHhc-cCCc--EEeccceeeEEEEeCC----cEEEEec------Cc--eeEeeCEEEEcCChhH-HHhhh
Q psy7673 303 QTIVNTLGEHL-SNKV--EVKMDTTCTNLEFLEK----GVKVTLN------ND--QHIEANHVVSALPAPK-LGMLL 363 (541)
Q Consensus 303 ~~l~~~l~~~l-~~~~--~i~~~~~V~~I~~~~~----~~~v~~~------~g--~~~~ad~VI~t~P~~~-~~~ll 363 (541)
..+.+.|.+.+ +.|+ +|+++++|++|.++++ +|+|+.. +| .+++||.||.|.-... +.+.+
T Consensus 141 ~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~l 217 (639)
T 2dkh_A 141 ARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAI 217 (639)
T ss_dssp HHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHh
Confidence 34555666655 3444 8999999999998753 5777643 45 5789999999986654 33444
No 425
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.25 E-value=0.018 Score=49.47 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
..+.|.|++|+||||+++.++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999877
No 426
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.24 E-value=0.016 Score=53.48 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45566778999999999999999998765
No 427
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.22 E-value=0.033 Score=48.28 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
-.+|+||+|+|||+++++|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998764
No 428
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.16 E-value=0.15 Score=49.26 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=27.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVK 47 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~ 47 (541)
......+.|.|++|+||||+++.++..+ +..+..++
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4556678899999999999999998765 44444443
No 429
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.13 E-value=0.28 Score=43.75 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.++++.+|+|+|||..+-..+...
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 569999999999998766555443
No 430
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.09 E-value=0.021 Score=55.78 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
....+..+.|.||+|+||||+++.++...
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34566678899999999999999999765
No 431
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.05 E-value=0.068 Score=49.78 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
...+.|.|++|+||||+++++...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999754
No 432
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.97 E-value=0.033 Score=49.43 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeCccc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i~~~~l 51 (541)
.-.|-|+|..||||||+++.+++ +|++++ ++..+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vi--daD~i 42 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLI 42 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHH
Confidence 34688999999999999999987 888766 54443
No 433
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=93.96 E-value=0.66 Score=47.95 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=42.5
Q ss_pred HHHHHHHHhccCCcEEeccceeeEEEEeCCcEEEEecC---c--eeEeeCEEEEcCChhH-HHhhh
Q psy7673 304 TIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNN---D--QHIEANHVVSALPAPK-LGMLL 363 (541)
Q Consensus 304 ~l~~~l~~~l~~~~~i~~~~~V~~I~~~~~~~~v~~~~---g--~~~~ad~VI~t~P~~~-~~~ll 363 (541)
.+-+.|.+.+.+. |+++++|++|.+++++|+|++.+ | .+++||.||.|.-... +.+.+
T Consensus 139 ~l~~~L~~~a~~~--v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~l 202 (549)
T 2r0c_A 139 WLAPLLAEAVGER--LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSPTRKAL 202 (549)
T ss_dssp HHHHHHHHHHGGG--EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCHHHHHH
T ss_pred HHHHHHHHHHHHh--cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcHHHHHc
Confidence 4555666666332 99999999999988888887654 5 4789999999986654 33444
No 434
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=93.94 E-value=0.11 Score=52.43 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCc-EEEEecCceeEeeCEEEEcCChhH
Q psy7673 301 GLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKG-VKVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 301 G~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
.-..+.+.|.+.+ ..|++|+++++|++|..++++ +.|.+.+|+.+.||.||+|+-...
T Consensus 132 ~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 132 KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence 3467778887777 568999999999999987776 788888887799999999985443
No 435
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.94 E-value=0.068 Score=47.76 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
.+.-|.|.|++|+||||+++.+++.++.+...+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 456788999999999999999999997644333
No 436
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.93 E-value=0.087 Score=47.29 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=17.4
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHHH
Q psy7673 16 SGVLLCGPPGCGKTLLA-KAVANE 38 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~-~~~a~~ 38 (541)
+++++.+|+|+|||... -.+...
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHHHH
Confidence 57999999999999873 333443
No 437
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.91 E-value=0.11 Score=46.92 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCcHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAK 33 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~ 33 (541)
++++++.+|+|+|||...-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4679999999999998644
No 438
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.91 E-value=0.026 Score=55.38 Aligned_cols=29 Identities=31% Similarity=0.263 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++.-+.|.||+|+||||+++.++...
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45567779999999999999999999643
No 439
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.88 E-value=0.031 Score=55.46 Aligned_cols=25 Identities=44% Similarity=0.598 Sum_probs=20.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
...+-.++.|+||||||+++..++.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3444578999999999999988764
No 440
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.87 E-value=0.019 Score=55.74 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
....+.-+.|.||+|+||||+++.++...
T Consensus 27 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 27 NIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45566778899999999999999999755
No 441
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=93.85 E-value=0.1 Score=44.91 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=42.1
Q ss_pred HHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChh
Q psy7673 304 TIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAP 357 (541)
Q Consensus 304 ~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 357 (541)
.+.+.+.+.+ ..|++++++ +|++|..+++++.|++.+| ++.+|.||+|+-..
T Consensus 57 ~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~ 109 (180)
T 2ywl_A 57 ELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKD 109 (180)
T ss_dssp HHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCC
Confidence 4555565555 457899999 9999998878899988888 79999999998654
No 442
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.85 E-value=0.094 Score=46.33 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCcHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAK 33 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~ 33 (541)
.+++++.+|+|+|||...-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3679999999999997554
No 443
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.85 E-value=0.059 Score=48.59 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=19.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.+.-|.|.|++|+||||+++.+++.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568888999999999999999887
No 444
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.82 E-value=0.064 Score=53.05 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA---GINFISVK 47 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~ 47 (541)
.+.++++.|++|+|||++++.++..+ +..++.+|
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 66789999999999999999998754 44444444
No 445
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.82 E-value=0.032 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
..+.|.|++|+||||+++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999998754
No 446
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.79 E-value=0.022 Score=53.62 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45567778999999999999999998765
No 447
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.78 E-value=0.036 Score=46.99 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
....+++.|++|+|||++++.+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999999864
No 448
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.77 E-value=0.018 Score=53.61 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAG 40 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~ 40 (541)
.++.-|+|.|++|+||||+++.+++.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4556788999999999999999999883
No 449
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.76 E-value=0.026 Score=52.35 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
... +..+.|.||+|+||||+++.++..+
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 456 6778999999999999999998754
No 450
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.74 E-value=0.13 Score=50.00 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.++++.+|+|+|||..+-..+.+.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 689999999999999876555443
No 451
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.72 E-value=0.037 Score=48.80 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
..+.|.|++|+|||++++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 452
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.65 E-value=0.023 Score=53.86 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...++..+.|.||+|+||||+++.++..+
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45677789999999999999999998765
No 453
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.60 E-value=0.05 Score=48.63 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.....++|.|++|+|||+++.++....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999998754
No 454
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.58 E-value=0.044 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
..+++.|++|+|||++++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 455
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.46 E-value=0.058 Score=48.45 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGI 41 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~ 41 (541)
..+.-|.|.|++|+||||+++.+++.++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45666888999999999999999987643
No 456
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.46 E-value=0.28 Score=49.02 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHH-HHHHHH---hCCcEEEEe
Q psy7673 15 PSGVLLCGPPGCGKTLLA-KAVANE---AGINFISVK 47 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~-~~~a~~---~~~~~~~i~ 47 (541)
++.+|+.||+|+|||..+ ..+.+. -+...+.+-
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 468999999999999985 444422 244445443
No 457
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.45 E-value=0.056 Score=47.16 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.....+++.|++|+|||+++.++....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999998643
No 458
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.45 E-value=0.044 Score=47.01 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
++...+.|.|++|+|||+++++++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999864
No 459
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.37 E-value=0.053 Score=45.36 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
-.+|+||.|+|||+++.+++-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998655
No 460
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.34 E-value=0.057 Score=49.00 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.+.-|.|.|++|+||||+++.+++.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999877
No 461
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.33 E-value=0.15 Score=46.12 Aligned_cols=19 Identities=37% Similarity=0.343 Sum_probs=15.9
Q ss_pred CcEEEEEcCCCCcHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAK 33 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~ 33 (541)
.+++++.+|+|+|||...-
T Consensus 62 ~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHH
Confidence 3679999999999998643
No 462
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.32 E-value=0.21 Score=45.38 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCcHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAK 33 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~ 33 (541)
++++++.+|+|+|||...-
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 3579999999999998744
No 463
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.27 E-value=0.063 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
..++|.|++|+|||++++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 464
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.25 E-value=0.048 Score=53.37 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEAGIN 42 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~~~~ 42 (541)
...+.|.||+|+||||+++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5678999999999999999999987543
No 465
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.25 E-value=0.048 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
..+.|.|++|+|||+++++++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999975
No 466
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=93.24 E-value=1.6 Score=44.34 Aligned_cols=57 Identities=16% Similarity=-0.021 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEe---cCce--eEeeCEEEEcCChhH
Q psy7673 302 LQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTL---NNDQ--HIEANHVVSALPAPK 358 (541)
Q Consensus 302 ~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~---~~g~--~~~ad~VI~t~P~~~ 358 (541)
-..+..+|++.+ ..|++|+++++|++|..+++.|.|++ .+|+ .+.||.||.|+-++.
T Consensus 148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s 210 (501)
T 2qcu_A 148 DARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV 210 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence 356777777776 56889999999999998877677776 3564 689999999987773
No 467
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=93.16 E-value=0.21 Score=49.13 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=42.3
Q ss_pred HHHHHHhc-cCCcEEeccceeeEEEEeCCcEEEEecCceeEeeCEEEEcCChh
Q psy7673 306 VNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSALPAP 357 (541)
Q Consensus 306 ~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 357 (541)
.+.+.+.+ ..|++|+++++|.+|..+++++.|++.+|+++.+|.||+++...
T Consensus 190 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~ 242 (384)
T 2v3a_A 190 AKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLR 242 (384)
T ss_dssp HHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCC
Confidence 44444555 45789999999999998877888888888889999999998643
No 468
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.15 E-value=0.11 Score=47.90 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
...++|.|++|+|||+++.++..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 34689999999999999999975
No 469
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.13 E-value=0.053 Score=45.80 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
...+++.|++|+|||++++.+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999864
No 470
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.12 E-value=0.046 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
..++|.|++|+|||+|++.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999975
No 471
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=93.11 E-value=0.14 Score=50.62 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhc-cCCcEEeccceeeEEEEe----CCcEEEEecCceeEeeCEEEEcCChh
Q psy7673 302 LQTIVNTLGEHL-SNKVEVKMDTTCTNLEFL----EKGVKVTLNNDQHIEANHVVSALPAP 357 (541)
Q Consensus 302 ~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~----~~~~~v~~~~g~~~~ad~VI~t~P~~ 357 (541)
...+.+.|.+.+ ..|++|+++++|++|..+ +++|.|++.+| ++.||+||+|+-..
T Consensus 108 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~ 167 (401)
T 2gqf_A 108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGL 167 (401)
T ss_dssp THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCS
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCc
Confidence 455666666666 457899999999999977 66799988777 79999999998443
No 472
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.11 E-value=0.075 Score=46.37 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
......++|.|++|+|||+++..+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34567899999999999999999975
No 473
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.09 E-value=0.054 Score=45.72 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
..+++.|++|+|||+++.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 474
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.09 E-value=0.45 Score=42.71 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
...|+|.|++|+|||+++.++...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999753
No 475
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.08 E-value=0.069 Score=45.73 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
.....|++.|++|+|||++++++..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3556799999999999999999975
No 476
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.08 E-value=0.066 Score=45.46 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
....+++.|++|+|||+++..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999763
No 477
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.04 E-value=0.093 Score=52.48 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=27.6
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN 42 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~ 42 (541)
|-...+.-+.|.||+|+||||+++.++......
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 455667779999999999999999999988543
No 478
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.04 E-value=0.081 Score=54.57 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeCcc
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANEA---GINFISVKGPE 50 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~~---~~~~~~i~~~~ 50 (541)
+..|+|+|++|+||||+++.+++.+ +.++..++...
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 5678999999999999999999877 45667776543
No 479
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.02 E-value=0.14 Score=47.20 Aligned_cols=23 Identities=48% Similarity=0.788 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
+.+.|.|.+|+|||+++.++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999754
No 480
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.02 E-value=0.14 Score=54.96 Aligned_cols=34 Identities=38% Similarity=0.467 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH-HHh--CCcEEEEe
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVA-NEA--GINFISVK 47 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a-~~~--~~~~~~i~ 47 (541)
.+.++++.+|+|+|||+.+.... +.+ +..++++.
T Consensus 39 ~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~ 75 (702)
T 2p6r_A 39 SGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV 75 (702)
T ss_dssp TCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 36789999999999999885443 222 45555554
No 481
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.95 E-value=0.064 Score=45.43 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
..+++.|++|+|||++++++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998643
No 482
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=92.95 E-value=0.16 Score=50.11 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=49.4
Q ss_pred HHHHHHHHHhccC--CcEEeccceeeEEEEeCCcE--EEEecCceeEeeCEEEEcCChhH-HHhhh
Q psy7673 303 QTIVNTLGEHLSN--KVEVKMDTTCTNLEFLEKGV--KVTLNNDQHIEANHVVSALPAPK-LGMLL 363 (541)
Q Consensus 303 ~~l~~~l~~~l~~--~~~i~~~~~V~~I~~~~~~~--~v~~~~g~~~~ad~VI~t~P~~~-~~~ll 363 (541)
..+.+.|.+.+.+ |++|+++++|++|..++++| .|++.+|+++.||.||.|.-... +.+.+
T Consensus 107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~l 172 (399)
T 2x3n_A 107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRL 172 (399)
T ss_dssp HHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHT
T ss_pred HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChHHHHHh
Confidence 5677788887743 78999999999999988888 89888888899999999986644 34444
No 483
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.93 E-value=0.061 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
..+++.|++|+|||++++.+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998643
No 484
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.91 E-value=0.056 Score=48.98 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q psy7673 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISV 46 (541)
Q Consensus 13 ~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~~~~i 46 (541)
.++.-+.|.|+.|+||||+++.++.. +..+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 34556889999999999999999876 5444443
No 485
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.89 E-value=0.13 Score=47.34 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh--CCcEEEEeCc
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANEA--GINFISVKGP 49 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~~--~~~~~~i~~~ 49 (541)
....+++.|.+|+||||++..++..+ +.++..+++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34568889999999999999999776 6677777753
No 486
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.88 E-value=0.047 Score=55.00 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 12 KSTPSGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 12 ~~~~~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
...+.-+.|.||+|+||||++|.++...
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4566779999999999999999999764
No 487
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.87 E-value=0.059 Score=46.30 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
....+++.|++|+|||++++.+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999999999764
No 488
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.86 E-value=0.06 Score=45.97 Aligned_cols=23 Identities=48% Similarity=0.595 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
...++|.|++|+|||++++.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45799999999999999999964
No 489
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.84 E-value=0.084 Score=51.01 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGIN 42 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~~~~ 42 (541)
....+.-+.|.||+|+||||+++.++......
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 44566778999999999999999999988543
No 490
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.84 E-value=0.067 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
..+++.|++|+|||++++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 479999999999999999998653
No 491
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.81 E-value=0.068 Score=45.75 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
...+++.|++|+|||++++.+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999754
No 492
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=92.77 E-value=0.19 Score=51.76 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhc-cCCcEEeccceeeEEEEeCCcE-EEEecCceeEeeCEEEEcCChhH
Q psy7673 302 LQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGV-KVTLNNDQHIEANHVVSALPAPK 358 (541)
Q Consensus 302 ~~~l~~~l~~~l-~~~~~i~~~~~V~~I~~~~~~~-~v~~~~g~~~~ad~VI~t~P~~~ 358 (541)
...+.+.|.+.+ ..|++|+++++|++|..+++++ .|++.+|+++.||.||+|+-...
T Consensus 219 ~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 219 LVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSA 277 (549)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence 356777787777 5688999999999999887665 48888888899999999986543
No 493
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.77 E-value=0.062 Score=46.74 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 14 TPSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 14 ~~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
....|+|.|++|+|||++++.+...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3446999999999999999999764
No 494
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.76 E-value=0.07 Score=45.26 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
...+++.|++|+|||++++.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 347999999999999999999864
No 495
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.71 E-value=0.13 Score=49.80 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeC
Q psy7673 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEA-----GINFISVKG 48 (541)
Q Consensus 11 ~~~~~~~~ll~G~~G~GKT~l~~~~a~~~-----~~~~~~i~~ 48 (541)
-..++..++|.||+|+|||++++.+++.. +..++++-+
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lI 212 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 212 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEe
Confidence 45667789999999999999999998865 445555543
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.71 E-value=0.078 Score=44.69 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy7673 17 GVLLCGPPGCGKTLLAKAVANEA 39 (541)
Q Consensus 17 ~~ll~G~~G~GKT~l~~~~a~~~ 39 (541)
.+++.|++|+|||++++.+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999997643
No 497
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.69 E-value=0.073 Score=44.93 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
..+++.|++|+|||++++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 498
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.68 E-value=0.041 Score=48.84 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.5
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q psy7673 10 FGKSTPSGVLLCGPPGCGKTLLAKAVAN 37 (541)
Q Consensus 10 ~~~~~~~~~ll~G~~G~GKT~l~~~~a~ 37 (541)
|....+..+.|.|++|+||||+++.++.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4456667799999999999999998864
No 499
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=92.66 E-value=0.25 Score=45.00 Aligned_cols=18 Identities=39% Similarity=0.552 Sum_probs=15.4
Q ss_pred CcEEEEEcCCCCcHHHHH
Q psy7673 15 PSGVLLCGPPGCGKTLLA 32 (541)
Q Consensus 15 ~~~~ll~G~~G~GKT~l~ 32 (541)
.+++++.+|+|+|||...
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 356999999999999864
No 500
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.66 E-value=0.07 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q psy7673 16 SGVLLCGPPGCGKTLLAKAVANE 38 (541)
Q Consensus 16 ~~~ll~G~~G~GKT~l~~~~a~~ 38 (541)
..+++.|++|+|||++++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999753
Done!