RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7673
(541 letters)
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 264 bits (676), Expect = 4e-86
Identities = 97/220 (44%), Positives = 131/220 (59%), Gaps = 10/220 (4%)
Query: 3 PVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGES 59
+K P F G P GVLL GPPG GKT LA+AVA EA + FI+ G + + M++G
Sbjct: 27 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 86
Query: 60 ERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGRG 117
VR F+ A+ PC++F DEIDA+ KR S G N+ + +NQLL EMDGFE
Sbjct: 87 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 146
Query: 118 GVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDF 177
+ +MAATNRPDI+DPA++RPGRFDR + ++ P+ + R++IL + + EDVD
Sbjct: 147 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP---LAEDVDL 203
Query: 178 DKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD 217
+A +R GF GADLE L+ EA A E + D
Sbjct: 204 ALLA--KRTPGFVGADLENLLNEAALLAAREGRRKITMKD 241
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 262 bits (671), Expect = 3e-85
Identities = 94/244 (38%), Positives = 138/244 (56%), Gaps = 26/244 (10%)
Query: 3 PVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGES 59
++ P F G P GVL+ GPPG GKTLLAKA+A EA + F ++ G + + M++G
Sbjct: 30 YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVG 89
Query: 60 ERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGRG 117
VR F++A+ + PC+IF DEIDA+ +R + G ++ + +NQ+L EMDGFEG
Sbjct: 90 ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149
Query: 118 GVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDF 177
G+ ++AATNRPD++DPA++RPGRFDR + V LP+ + R++IL ++ + D+D
Sbjct: 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---LAPDIDA 206
Query: 178 DKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIA 237
IA GFSGADL LV EA A + + F+ A
Sbjct: 207 AIIA--RGTPGFSGADLANLVNEAALFAARG----------------NKRVVSMVEFEKA 248
Query: 238 LKRI 241
+I
Sbjct: 249 KDKI 252
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 198 bits (504), Expect = 2e-60
Identities = 101/244 (41%), Positives = 147/244 (60%), Gaps = 10/244 (4%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
+PV++P F G + GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GE
Sbjct: 25 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 84
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSL--GDNNSSMRIVNQLLTEMDGFEGR 116
SE VR+ F +AR + PCV+FFDE+D++ R ++ R++NQ+LTEMDG +
Sbjct: 85 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 144
Query: 117 GGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
VF++ ATNRPDIIDPA++RPGR D+++++ LP+E+ R IL A ++
Sbjct: 145 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD----- 199
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236
D + GFSGADL ++ + A + AI E + S ++ + + +
Sbjct: 200 VDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVP 259
Query: 237 ALKR 240
++R
Sbjct: 260 EIRR 263
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 188 bits (478), Expect = 7e-56
Identities = 37/219 (16%), Positives = 71/219 (32%), Gaps = 12/219 (5%)
Query: 1 MFPVKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGPELLNMYLGE 58
PV + V++ G GKT L A+ G + +V+ E L+ Y +
Sbjct: 109 CSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTD 168
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGG 118
V + Q VI D + + + R LL+++ G
Sbjct: 169 FNVFVDDIARAML--QHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRG 226
Query: 119 VFLMAATNR---PDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDV 175
++A+ N D I V R + V + ++L + + +
Sbjct: 227 CVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGE--GLQRLTHTL 284
Query: 176 DFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVE 214
+ + E + K+A +AI ++ + E
Sbjct: 285 ---QTSYGEHSVLTIHTSKQSGGKQASGKAIQTVIKNDE 320
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 161 bits (407), Expect = 2e-46
Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 10/243 (4%)
Query: 2 FPVKYPKLF---GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGE 58
P+++P LF G P G+LL GPPG GKTL+A+AVANE G F + GPE+++ GE
Sbjct: 22 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 81
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGG 118
SE +R+ F+ A + P +IF DE+DA+ PKR RIV+QLLT MDG + R
Sbjct: 82 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THGEVERRIVSQLLTLMDGLKQRAH 140
Query: 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFD 178
V +MAATNRP+ IDPA+ R GRFDR + + +P+ R EIL Q M D D
Sbjct: 141 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-----QIHTKNMKLADDVD 195
Query: 179 KIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQA-GIDDTEQVTIGFRHFDIA 237
G GADL L EA QAI + ++ ++ +D+ + + + F A
Sbjct: 196 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 255
Query: 238 LKR 240
L +
Sbjct: 256 LSQ 258
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 128 bits (321), Expect = 3e-34
Identities = 26/261 (9%), Positives = 63/261 (24%), Gaps = 39/261 (14%)
Query: 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL---LNMYLGESERAVRQCF 67
+P+ LL G PG GKT L A+ E N I + + + +
Sbjct: 28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVV 87
Query: 68 QRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLL----------TEMDGFEGRG 117
+ + + + + V T+M
Sbjct: 88 KHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPK 147
Query: 118 GVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDF 177
+ R + + R ++ + + +
Sbjct: 148 INSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDI------- 200
Query: 178 DKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIA 237
++ E + +S + + + + + +N + +
Sbjct: 201 -RLYNREGVKLYSSLETPSISPKE---TLEKELNRK---------------VSGKEIQPT 241
Query: 238 LKRIKPSVSKADCKNYESLKQ 258
L+RI+ + + K
Sbjct: 242 LERIEQKMVLNKHQETPEFKA 262
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 120 bits (301), Expect = 1e-31
Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 18/216 (8%)
Query: 4 VKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESE-RA 62
V+ K ++ VLL GPP GKT LA +A E+ FI + P+ + + ++ +A
Sbjct: 29 VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQA 88
Query: 63 VRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFL- 121
+++ F A SQ + D+I+ L S ++ LL + +G L
Sbjct: 89 MKKIFDDAYKSQLSCVVVDDIERLLDYVPI--GPRFSNLVLQALLVLLKKAPPQGRKLLI 146
Query: 122 MAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIA 181
+ T+R D++ M F + V PN +++L AL +D + IA
Sbjct: 147 IGTTSRKDVLQEMEML-NAFSTTIHV--PNIATGEQLLEALEL----LGNFKDKERTTIA 199
Query: 182 ADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD 217
+ G + +K+ ++E+ ++ +
Sbjct: 200 -----QQVKGKKVWIGIKKL--LMLIEMSLQMDPEY 228
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 122 bits (306), Expect = 3e-31
Identities = 28/232 (12%), Positives = 54/232 (23%), Gaps = 40/232 (17%)
Query: 2 FPVKYPKLFGKSTP--SGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMY-LGE 58
+ K + P L GP GKT LA A+ G ++V P + LG
Sbjct: 139 VVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGV 198
Query: 59 SERAVRQCFQRA------RNSQPCVIFFDEIDALCPKRSSLGDNNSSMRI------VNQL 106
+ F+ P + +D L D + + +
Sbjct: 199 AIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNL----RDYLDGSVKVNLEKKHLNKRTQ 254
Query: 107 LTEMDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRK-EILLALTKQ 165
+ + N RF + + + E L ++
Sbjct: 255 IFPP----------GIVTMNE---YSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEK 301
Query: 166 GKDPMMGEDVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD 217
+ A+ Q ++ + +
Sbjct: 302 RII-----QSGIALLL--MLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSV 346
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 92.2 bits (228), Expect = 3e-21
Identities = 53/262 (20%), Positives = 96/262 (36%), Gaps = 26/262 (9%)
Query: 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM--YLGESERAVRQCFQRA-- 70
P +L+ GP G GKT +A+ +A A FI V+ + + E + +R A
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 108
Query: 71 ---RNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGV-------F 120
Q ++F DEID +C K G + S + LL ++G
Sbjct: 109 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 168
Query: 121 LMAATNRPDIIDPAVMRP---GRFDRILFVNLPNEQDRKEIL----LALTKQGKDPMMGE 173
L A+ + P+ + P GR + + + D + IL +LT+Q K M E
Sbjct: 169 LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE 228
Query: 174 DVDFDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDT--EQVTIGF 231
V+ + + + + + + + ++ + + D + V I
Sbjct: 229 GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDA 288
Query: 232 RHFDIALKRIKPSVSKADCKNY 253
+ AL + V D +
Sbjct: 289 AYVADALGEV---VENEDLSRF 307
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 89.1 bits (219), Expect = 2e-20
Identities = 28/229 (12%), Positives = 56/229 (24%), Gaps = 24/229 (10%)
Query: 11 GKSTPSGVLLCGPPGCGKTLLAKAVANE----AGINFISVKGPELLNMYLGESERAVRQC 66
L G PG GKT+ + + F+ + G N E A
Sbjct: 39 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLN 98
Query: 67 FQRARNSQPCVIFFDEIDALCPKRSSLG--------DNNSSMRIVNQLLTEMDGFEGRGG 118
R F + +R + + L + G
Sbjct: 99 IPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR 158
Query: 119 VFLMAATNRPDIIDPAVMRPGRFDRILFVNLPN--EQDRKEILLALTKQGKDPMMGEDVD 176
+ L+ + +++ + + +ILL K G +
Sbjct: 159 IALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDI 218
Query: 177 FDKIAADERCEGFSGADLEQ--------LVKEAREQAILEIVNSVENDD 217
IA + + D + ++ + A + +D
Sbjct: 219 LQMIA--DITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPED 265
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus
xanthus [TaxId: 34]}
Length = 108
Score = 84.1 bits (208), Expect = 2e-20
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 379 HVNVAVINLAY--ENIPMKQNAFGFLVPPREKLPILGVVFDSCCFEQ---ADWTILTVMM 433
+ +AV++L + +P + FGFLVP E+ +LG + S F + + M+
Sbjct: 2 YAPIAVVHLGFDAGTLPAP-DGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMV 60
Query: 434 GGAWYDTYFKGQSKEYILDIACRYVHEILDMPRTPHAQHVEILKACIPQ 482
GGA + Q ++ + +A + + + P V IPQ
Sbjct: 61 GGARQPGLVE-QDEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQ 108
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 86.9 bits (214), Expect = 6e-20
Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 18/211 (8%)
Query: 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRA 70
K +LL GPPG GKT LA +A+E G+N GP + +
Sbjct: 31 RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI-------EKPGDLAAILAN 83
Query: 71 RNSQPCVIFFDEIDALCPKRS----SLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATN 126
+ ++F DEI L + ++ ++ Q L+ AT
Sbjct: 84 SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 143
Query: 127 RPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERC 186
RP +I ++ L P E + + ++G + + R
Sbjct: 144 RPGLITAPLLSRFGIVEHLEYYTPEELAQGVMR-------DARLLGVRITEEAALEIGRR 196
Query: 187 EGFSGADLEQLVKEAREQAILEIVNSVENDD 217
+ ++L + R+ A + + +
Sbjct: 197 SRGTMRVAKRLFRRVRDFAQVAGEEVITRER 227
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 112
Score = 77.3 bits (190), Expect = 6e-18
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 378 EHVNVAVINLAY--ENIPMKQNAFGFLVPPREK---LPILGVVFDSCCFEQ---ADWTIL 429
++V ++V+ + EN+ FG LVP +E+ L LG +F S F + +
Sbjct: 1 DYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLY 60
Query: 430 TVMMGGAWYDTYFKGQSKEYILDIACRYVHEILDMPRTPHAQHVEILKACIP 481
T +GG+ K S+ + +I + ++L P + P
Sbjct: 61 TTFVGGSRNRELAK-ASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFP 111
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 65.0 bits (157), Expect = 2e-12
Identities = 48/230 (20%), Positives = 82/230 (35%), Gaps = 26/230 (11%)
Query: 4 VKYPKLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAV 63
++ K+ G+ VLL GPPG GKT LA +A+E N GP L +
Sbjct: 25 LEAAKMRGEVLDH-VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL--------VKQG 75
Query: 64 RQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTE----MDGFEGRGGV 119
+ V+F DEI L L + ++ ++ +
Sbjct: 76 DMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 135
Query: 120 FLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDK 179
L+ AT R ++ + RF IL ++ ++ KEI+ + D +
Sbjct: 136 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIE--DAAAEM 191
Query: 180 IAADERCEGFSGADLEQLVKEAREQAILEIVNSVEND------DQAGIDD 223
IA + + +L K R+ + + + D + IDD
Sbjct: 192 IA---KRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 238
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 57.1 bits (136), Expect = 2e-09
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 291 EKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNND---QHIEA 347
++ + +GGLQ +++ L L + L + G ++ + +
Sbjct: 210 LSGALSTFDGGLQVLIDALAASL--GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSV 267
Query: 348 NHVVSALPAPKLGMLLHKQHPTLGNLLSSIEHV----NVAVINLAYENIP 393
VV A PA LL L L++ I ++ VA I+ A + +P
Sbjct: 268 AQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVAAIDAALQRLP 317
Score = 44.0 bits (102), Expect = 3e-05
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 432 MMGGAWYDTYFKGQSKEYILDIACRYV------HEILDMPRTPHAQHVEILKACIPQYTL 485
G W + + +++ V H + R ++ Y L
Sbjct: 247 REDGGWRLIIEEHGRRA---ELSVAQVVLAAPAHATAKLLRPLDDALAALVAG---IYNL 300
Query: 486 GHAARVKDIQGYIDTHQLPLYLTGSSYDGVGVNDVIALSKKAVESI 531
GH RV I + L+L G++Y GVG+ND I + + +++
Sbjct: 301 GHLERVAAIDAALQRLP-GLHLIGNAYKGVGLNDCIRNAAQLADAL 345
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 56.7 bits (136), Expect = 4e-09
Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 8/172 (4%)
Query: 14 TPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNS 73
TP +L+ GP G GKT +A+ +A A FI V+ + +G + V + +S
Sbjct: 48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF--TEVGYVGKEVDSIIRDLTDS 105
Query: 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDP 133
++ EI + + + RI++ LL G ++ R
Sbjct: 106 AMKLVRQQEIAKNRARAEDVAEE----RILDALLPPAKNQWGEVENHDSHSSTRQA--FR 159
Query: 134 AVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADER 185
+R G+ D + + + ++ F + +D+
Sbjct: 160 KKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKT 211
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 54.8 bits (130), Expect = 7e-09
Identities = 23/235 (9%), Positives = 58/235 (24%), Gaps = 37/235 (15%)
Query: 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQ-------- 68
G G GKT LAK + +
Sbjct: 48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGY 107
Query: 69 -------------------RARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTE 109
+ ++ DE ++ + + + ++ E
Sbjct: 108 PIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAE---DLYTLLRVHEE 164
Query: 110 MDGFEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDP 169
+ +G + + + + + + + + L + L + +Q +
Sbjct: 165 IPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAEL 224
Query: 170 MMGEDVDFD-------KIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDD 217
+ + V + +++ S +K A E A +S+ D
Sbjct: 225 GLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDL 279
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 48.1 bits (114), Expect = 1e-06
Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 27/174 (15%)
Query: 9 LFGKSTPSGVLLCGPPGCGKTLLAKAVA----------NEAGINFISVKGPELL--NMYL 56
+ + + LL G G GKT +A+ +A A S+ LL Y
Sbjct: 33 VLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 92
Query: 57 GESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGR 116
G+ E+ + ++ ++F DEI + ++ G + ++ LL+
Sbjct: 93 GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-------S 145
Query: 117 GGVFLMAATNRPDII-----DPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQ 165
G + ++ +T + D A+ R RF +I + P+ ++ +I+ L +
Sbjct: 146 GKIRVIGSTTYQEFSNIFEKDRALAR--RFQKI-DITEPSIEETVQIINGLKPK 196
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 46.7 bits (110), Expect = 4e-06
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYL------GESERAVRQCFQ 68
S +LL GP G GKTL+A+ +A I L R ++
Sbjct: 68 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 127
Query: 69 RARNSQPCVIFFDEIDALCPKRSSLGDNNSSMR--IVNQLLTEMDGFEGR 116
+ +Q ++F DEID + + + LL ++G
Sbjct: 128 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 177
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 45.7 bits (108), Expect = 5e-06
Identities = 43/212 (20%), Positives = 76/212 (35%), Gaps = 51/212 (24%)
Query: 14 TPSGVLLCGPPGCGKTLLAKAVANEAG--INFISVKGPELLNMYLGESER--AVRQCFQR 69
VL+ G G GK ++A+ + + + + E+E + F
Sbjct: 22 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTG 81
Query: 70 ARNSQPC--------VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLT--EMDGFEGRGG- 118
A +S+ +F DEI L S+ +LL E F GG
Sbjct: 82 AVSSKEGFFELADGGTLFLDEIGEL------------SLEAQAKLLRVIESGKFYRLGGR 129
Query: 119 ------VFLMAATNRPDIIDPAVMRPGRFDRILF-------VNLPNEQDRKEILLALTKQ 165
V ++AATNR +++ G+F L+ + +P ++RKE ++
Sbjct: 130 KEIEVNVRILAATNRN---IKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDII----- 181
Query: 166 GKDPMMGEDVDFDKIAADERCEGFSGADLEQL 197
P+ + + EGF+ + E L
Sbjct: 182 ---PLANHFLKKFSRKYAKEVEGFTKSAQELL 210
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 41.1 bits (95), Expect = 8e-05
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51
+LL G PG GK+ +A+A+AN G+ + +L
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 40.0 bits (92), Expect = 2e-04
Identities = 27/206 (13%), Positives = 46/206 (22%), Gaps = 25/206 (12%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKG-----PELLNMYLGESERAVRQCFQRARN 72
V L GPPG GKT L + + + V G +G +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 73 SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIID 132
+ L V + R +ID
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSS-----------GPGQRVCVID 112
Query: 133 PAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGA 192
+ I+L K + + +
Sbjct: 113 EIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFN----- 167
Query: 193 DLEQLVKEAREQAILEIVNSVENDDQ 218
+ KE R + +IV V++ +
Sbjct: 168 ----VTKENRNHLLPDIVTCVQSSRK 189
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 40.5 bits (93), Expect = 3e-04
Identities = 33/216 (15%), Positives = 59/216 (27%), Gaps = 21/216 (9%)
Query: 11 GKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRA 70
G +L GPPG GKT A VA E G + + ++ + L A +
Sbjct: 48 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL---LNAGVKNALDN 104
Query: 71 RNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI 130
+ +E L K + + + +
Sbjct: 105 MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNER 164
Query: 131 IDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFS 190
P + R + P+ K + + E D D + +
Sbjct: 165 NLPKMRPFDRVCLDIQFRRPDANSIK-------SRLMTIAIREKFKLDPNVIDRLIQ-TT 216
Query: 191 GADLEQLV----------KEAREQAILEIVNSVEND 216
D+ Q++ K + I EI + E +
Sbjct: 217 RGDIRQVINLLSTISTTTKTINHENINEISKAWEKN 252
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 39.3 bits (90), Expect = 5e-04
Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 11/194 (5%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
V + G GK++L +A G E + LG E+A++
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQR 69
Query: 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMR 137
+ D ++ Q + F + +
Sbjct: 70 YIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD 129
Query: 138 PGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQL 197
G + Q +++L L + K P ++ + + +R A +E++
Sbjct: 130 DGLRSLG---SQKQRQQFQQLLKKLLDKYKVPY----IEIESPSYLDRYN-QVKAVIEKV 181
Query: 198 VKEAREQAILEIVN 211
+ E I E+ N
Sbjct: 182 LNEEE---ISELQN 192
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 39.2 bits (90), Expect = 5e-04
Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 6/157 (3%)
Query: 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISV----KGPELLNMYLGESERAVRQCF 67
KS P+ V + G PG GK + + G +S + + GE + +
Sbjct: 3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNG 62
Query: 68 QRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127
+ + + + IDA K + + N E + + F++
Sbjct: 63 EIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSW--EENMKDFVDTKFVLFFDCP 120
Query: 128 PDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTK 164
+++ +++ G N+ + + R TK
Sbjct: 121 EEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTK 157
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 38.0 bits (87), Expect = 9e-04
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
+LL G PG GKT L K +A+++G+ +I+V
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 38.6 bits (88), Expect = 9e-04
Identities = 16/153 (10%), Positives = 34/153 (22%), Gaps = 8/153 (5%)
Query: 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQ 74
+L+ PG G L A++ + + +
Sbjct: 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK 83
Query: 75 PCVIF-FDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDP 133
D + + K + + + + + +
Sbjct: 84 GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143
Query: 134 AVMRPGRFD-------RILFVNLPNEQDRKEIL 159
A P R R+ ++ P EQ L
Sbjct: 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWL 176
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 37.9 bits (87), Expect = 0.001
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQ 65
P V+ G PG GK+ + AG ++ + + A+RQ
Sbjct: 14 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQ 64
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 38.0 bits (87), Expect = 0.001
Identities = 17/142 (11%), Positives = 38/142 (26%), Gaps = 10/142 (7%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
+ + G GCG T + + +A G F+ ++++ + A
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFVD------TDIFMQHTSGMTVADVVAAEGWPGFR 58
Query: 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVMR 137
E + + LL + F G + ++
Sbjct: 59 RRESEALQAVATP----NRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQAS 114
Query: 138 PGRFDRILFVNLPNEQDRKEIL 159
R P ++ + +L
Sbjct: 115 LQAHQRPTLTGRPIAEEMEAVL 136
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 38.9 bits (90), Expect = 0.001
Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 30/175 (17%)
Query: 12 KSTPSGVLLCGPPGCGKTLLAKAVANE--AGINFISVKGPELLNMYLGE----------- 58
+ T + +L G PG GKT + + +A G +KG ++++ +G
Sbjct: 40 RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF 99
Query: 59 SERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGG 118
ER + ++ ++F DE+ + G ++ N L + RG
Sbjct: 100 EERLKAVIQEVVQSQGEVILFIDELHTVV----GAGKAEGAVDAGNMLKPAL----ARGE 151
Query: 119 VFLMAATNRPD-----IIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKD 168
+ L+ AT D DPA+ R RF + ++V+ P ++ IL L ++ +
Sbjct: 152 LRLIGATT-LDEYREIEKDPALER--RF-QPVYVDEPTVEETISILRGLKEKYEV 202
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 37.6 bits (86), Expect = 0.001
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 13 STPSGVLLCGPPGCGKTLLAKAVANEAGINFISV 46
+ P V++ G P GK + + + + IS
Sbjct: 1 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISA 34
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 37.7 bits (87), Expect = 0.002
Identities = 24/205 (11%), Positives = 61/205 (29%), Gaps = 29/205 (14%)
Query: 8 KLFGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINF-----ISVKGPELLNMYLGESERA 62
++ KS +L+ G ++ + + PE N+ + +
Sbjct: 8 RIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTI 67
Query: 63 VRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLM 122
+ + + R + N+ ++ + + ++
Sbjct: 68 KDFLNYSPELYTRKYVIVHDCE-----RMTQQAANAFLKALEE---------PPEYAVIV 113
Query: 123 AATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAA 182
T R + P + R R++ +D + + + + P++ D A
Sbjct: 114 LNTRRWHYLLPTIK--SRVFRVVVNVPKEFRDLVKEKIGDLWE-ELPLLERDFKTALEAY 170
Query: 183 DERCEGFSGA-------DLEQLVKE 200
E SG + E+L+K+
Sbjct: 171 KLGAEKLSGLMESLKVLETEKLLKK 195
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 38.4 bits (88), Expect = 0.002
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 17 GVLLCGPPGCGKTLLAKAVA 36
GVL+ G G GK+ +A+A
Sbjct: 30 GVLVFGDRGTGKSTAVRALA 49
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 37.3 bits (85), Expect = 0.002
Identities = 5/38 (13%), Positives = 16/38 (42%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMY 55
++L G GK+ + + + + +++ L+
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM 43
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 37.9 bits (87), Expect = 0.002
Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 19/234 (8%)
Query: 18 VLLCGPPGCGKTLLAKAVANEA---------GINFISVKGPELLNMYLGESERAVRQCFQ 68
+ L G G GK+++A +++ I ++ G + + ++ + +
Sbjct: 47 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSE 106
Query: 69 RARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRP 128
+ P V + ++L D +++ + + ++ E + T R
Sbjct: 107 DDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRD 166
Query: 129 DIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEG 188
I A + + V + + L A EDV +K E G
Sbjct: 167 VEISNAASQT---CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDV-LNKTI--ELSSG 220
Query: 189 FSGA--DLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIALKR 240
+ + + + ++ N +E+ G++ ++ +AL+R
Sbjct: 221 NPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECI--TPYSYKSLAMALQR 272
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 36.8 bits (84), Expect = 0.003
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 4/103 (3%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV----KGPELLNMYLGESERAVRQCFQRARNS 73
VLL GPPG GK A +A + GI IS + LG + +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 62
Query: 74 QPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGR 116
+ D ++ + D + L EM G
Sbjct: 63 LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGT 105
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 37.5 bits (85), Expect = 0.003
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 7/110 (6%)
Query: 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQ 74
+LL GP G GK A+ I G L + + + A + + S
Sbjct: 33 LPHLLLYGPNGTGKKTRCMALL-----ESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 87
Query: 75 PCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTE--MDGFEGRGGVFLM 122
P + D R + + + + Q+ + DG R ++
Sbjct: 88 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVII 137
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 37.4 bits (85), Expect = 0.003
Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 6/105 (5%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVR----QCFQRARNS 73
L+ G GK+ + K NE + +I + + + + + + +
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRL 91
Query: 74 QPCVIFFDEIDAL--CPKRSSLGDNNSSMRIVNQLLTEMDGFEGR 116
+ I + N LL +
Sbjct: 92 PSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKD 136
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 36.2 bits (82), Expect = 0.003
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFI 44
+L G G GK+ +A VA++ F+
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFL 35
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 36.1 bits (82), Expect = 0.004
Identities = 34/199 (17%), Positives = 59/199 (29%), Gaps = 26/199 (13%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
+++ G PG GKT L K + + + + + E R F+
Sbjct: 3 IIITGEPGVGKTTLVKKIV-----ERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKK 57
Query: 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPD--IIDPAV 135
IF + S G N E + A +R IID
Sbjct: 58 IFSSKFFTSKKLVGSYGVNVQYF--------EELAIPILERAYREAKKDRRKVIIIDEIG 109
Query: 136 MRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLE 195
+ + D ++A P+ +I GA L
Sbjct: 110 KMELFSKKFRDLVRQIMHDPNVNVVATI-----PIRDVHPLVKEIRR------LPGAVLI 158
Query: 196 QLVKEAREQAILEIVNSVE 214
+L E R+ + +I++ +E
Sbjct: 159 ELTPENRDVILEDILSLLE 177
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 36.6 bits (84), Expect = 0.004
Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 48/225 (21%)
Query: 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELL---------------------- 52
L G G GKT +A+ +A P +
Sbjct: 34 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS 93
Query: 53 NMYLGESERAVRQCFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDG 112
+ ++ + + V DE+ L S N LL ++
Sbjct: 94 RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML------------SRHSFNALLKTLE- 140
Query: 113 FEGRGGVFLMAATNRPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMG 172
E V + AT P + ++ + +++ + + E + ++ +
Sbjct: 141 -EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI-----LNEEHIAH 194
Query: 173 EDVDFDKIAADERCEGFSGAD----LEQLVKEAREQAILEIVNSV 213
E +A EG S D +Q + Q + V+++
Sbjct: 195 EPRALQLLA--RAAEG-SLRDALSLTDQAIASGDGQVSTQAVSAM 236
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 35.6 bits (81), Expect = 0.006
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
+ G PG GK ++ + + +S
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHLSS 37
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 35.1 bits (79), Expect = 0.008
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
+ L GP G GK+ + + +A + + F
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 35.3 bits (80), Expect = 0.008
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
++L GPPG GK A + ++
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLAT 33
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 35.0 bits (79), Expect = 0.008
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVK 47
+L G PG GK+ + + +A G+ +
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTD 33
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 35.3 bits (80), Expect = 0.010
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 10 FGKSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISV 46
F S + + G PG GK + + + +S
Sbjct: 3 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 39
>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 212
Score = 35.5 bits (81), Expect = 0.010
Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 10/122 (8%)
Query: 173 EDVDFDKIAA--DERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIG 230
E ++ DKI D EG + Q+ + Q + + + + + + ++
Sbjct: 6 ERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQ-FYDGIKTSDIHETIIKAAADLISRD 64
Query: 231 FRHFDIALKRIKPSVSKADCKNYESLKQRYTTPGAIKEMMSKRPDLSGYEESELYRRSRI 290
+ R+ + Y + + K ++ Y+ L +
Sbjct: 65 APDYQYLAARLAIFHLRKKAYGQFEPPALY-------DHVVKMVEMGKYDNHLLEDYTEE 117
Query: 291 EK 292
E
Sbjct: 118 EF 119
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 34.9 bits (79), Expect = 0.011
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
++L G PG GK A+ + GI IS
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHIST 31
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 34.9 bits (79), Expect = 0.011
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
++L G P GK A+ + + GI IS
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 35.4 bits (80), Expect = 0.012
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 22 GPPGCGKTLLAKAVANEAGINFIS 45
GP G GK L KA+A + +
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLD 33
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 34.9 bits (79), Expect = 0.012
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
+L GPPG GK A +A + ++
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 34.5 bits (78), Expect = 0.012
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFI 44
++ G G GK+ LA+A+A + + F+
Sbjct: 3 IVFIGFMGSGKSTLARALAKDLDLVFL 29
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 34.2 bits (77), Expect = 0.017
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFIS 45
++ GP G GK+ K +A + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYI 32
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 35.2 bits (80), Expect = 0.018
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 18/107 (16%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNM------------YLGESERAVRQ 65
L GP G GKT + ++ GI + E + Y+G +
Sbjct: 55 FLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GL 112
Query: 66 CFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDG 112
V+ DEI+ P N + N LT+ +G
Sbjct: 113 LTDAVIKHPHAVLLLDEIEKAHPD----VFNILLQVMDNGTLTDNNG 155
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 34.5 bits (78), Expect = 0.018
Identities = 9/61 (14%), Positives = 18/61 (29%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
+ + G PG GK + + + G +S + G + + P
Sbjct: 11 IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLE 70
Query: 78 I 78
Sbjct: 71 T 71
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 34.3 bits (77), Expect = 0.020
Identities = 10/66 (15%), Positives = 20/66 (30%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
+ + G GKT LA ++ ISV + + + ++R +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84
Query: 78 IFFDEI 83
Sbjct: 85 DVEWLT 90
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 34.6 bits (78), Expect = 0.021
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 22 GPPGCGKTLLAKAVANEAGINFIS 45
GP GK+ +AK +A + G ++
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYLD 33
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 34.1 bits (77), Expect = 0.021
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
++L G PG GK A + + G IS
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHIST 31
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 35.1 bits (79), Expect = 0.022
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 285 YRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQH 344
S GG + + + L VK++ ++ + V V N +
Sbjct: 192 RIISTTNGGQERKFVGGSGQVSERIMDLL--GDRVKLERPVIYIDQTRENVLVETLNHEM 249
Query: 345 IEANHVVSALPAPKL 359
EA +V+SA+P
Sbjct: 250 YEAKYVISAIPPTLG 264
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 33.8 bits (76), Expect = 0.027
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
V + G PG GK + + G +S
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKYGYTHLSA 32
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 33.8 bits (76), Expect = 0.029
Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 7/132 (5%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVK-------GPELLNMYLGESERAVRQCFQRA 70
V++ G PG G T ++ + ++ K E+ S+R +
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPE 63
Query: 71 RNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDI 130
+ + +I + + D +S++ L + + +
Sbjct: 64 TQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTG 123
Query: 131 IDPAVMRPGRFD 142
+ + R
Sbjct: 124 DEILMRRMSDET 135
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 32.8 bits (74), Expect = 0.033
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 312 HLSNKVEVKMDTTCTNLEFLEKGVKVTLNNDQHIEANHVVSA 353
V+V + ++ + + L + + +E +H+V+A
Sbjct: 93 VRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAA 134
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 33.4 bits (75), Expect = 0.039
Identities = 18/200 (9%), Positives = 52/200 (26%), Gaps = 15/200 (7%)
Query: 15 PSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQ 74
P+ +++ G P GKT ++K + + + + V+
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR----RDMVKTYKSFEFFLP 57
Query: 75 PCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPA 134
+ S + + + T +
Sbjct: 58 DNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATN-----------TTRERRAMIFN 106
Query: 135 VMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADL 194
+ ++ + + + K G + D D R E + +
Sbjct: 107 FGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYE 166
Query: 195 EQLVKEAREQAILEIVNSVE 214
++ R+ + ++I++ +
Sbjct: 167 SLDEEQDRDLSYIKIMDVGQ 186
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 32.7 bits (73), Expect = 0.059
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFI 44
+L+ G PG GKT +A+ +A E
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQH 34
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 32.8 bits (73), Expect = 0.064
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFI 44
+ L G GK +A+A+
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQQGG 35
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 33.3 bits (74), Expect = 0.072
Identities = 5/71 (7%), Positives = 15/71 (21%), Gaps = 1/71 (1%)
Query: 284 LYRRSRIEKWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVTLNND 342
+R K GL + ++ ++ V +
Sbjct: 215 SESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEG 274
Query: 343 QHIEANHVVSA 353
+ ++
Sbjct: 275 EVARCKQLICD 285
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 32.6 bits (74), Expect = 0.090
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 6/110 (5%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINF--ISVKGPELLNMYLGESERAVRQCFQR----AR 71
L GP G GK+ +A + N + + G L R V Q R
Sbjct: 43 TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR 102
Query: 72 NSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFL 121
+ Q + + + ++ + + ++ L D G L
Sbjct: 103 SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQL 152
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 31.6 bits (70), Expect = 0.12
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 18 VLLCGPPGCGKTLLAKAVANE 38
+L G PG GK+ A+ +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAK 25
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 32.1 bits (71), Expect = 0.16
Identities = 9/72 (12%), Positives = 18/72 (25%), Gaps = 3/72 (4%)
Query: 284 LYRRSRIEKWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEKGVKVT--LN 340
+R K GL + +DT + + + K
Sbjct: 217 CQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT 276
Query: 341 NDQHIEANHVVS 352
+A V++
Sbjct: 277 KLGTFKAPLVIA 288
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 31.2 bits (69), Expect = 0.23
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINF 43
V L G G GKT ++ A+ +
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHG 47
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 30.7 bits (68), Expect = 0.29
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGP 49
+ + G GK+ + + G N + +
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQK 36
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 30.8 bits (68), Expect = 0.30
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
++ G PG GK+ + V I+
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINN 32
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 30.8 bits (68), Expect = 0.30
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 16/86 (18%)
Query: 19 LLCGPPGCGKTLLAKAVANE----------------AGINFISVKGPELLNMYLGESERA 62
L GPPG GKT A+ E + IS+ ++ N +
Sbjct: 37 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKP 96
Query: 63 VRQCFQRARNSQPCVIFFDEIDALCP 88
+ + +I DE D++
Sbjct: 97 SKHDLENYPCPPYKIIILDEADSMTA 122
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 30.9 bits (68), Expect = 0.31
Identities = 24/196 (12%), Positives = 43/196 (21%), Gaps = 2/196 (1%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGIN-FISVKGPELLNMYLGESERAVRQCFQRARNSQPC 76
+ G GKT + +A + + + + + R R R
Sbjct: 26 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSG 85
Query: 77 VIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAVM 136
D + + + + L A
Sbjct: 86 SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQ 145
Query: 137 RPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQ 196
+ + L +E ++ D D K S L
Sbjct: 146 MHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL-Y 204
Query: 197 LVKEAREQAILEIVNS 212
L K E I +I +S
Sbjct: 205 LRKGRGETRICKIYDS 220
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 30.8 bits (68), Expect = 0.38
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 8 KLFGKSTPSG--VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAV 63
+ G S G G GKT + E ++ +AV
Sbjct: 25 SVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAV 82
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma
cruzi [TaxId: 5693]}
Length = 117
Score = 29.4 bits (65), Expect = 0.40
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 12/89 (13%)
Query: 277 SGYEESELYRRSRIEKWSVWSVE----------GGLQTIVNTLGEHLSNK-VEVKMDTTC 325
G+ E K V G T+ L + L+ +++
Sbjct: 28 GGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENP 87
Query: 326 TNLEFLEKGVK-VTLNNDQHIEANHVVSA 353
+E G K VT + + ++ + V+ A
Sbjct: 88 AKVELNADGSKSVTFESGKKMDFDLVMMA 116
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 30.8 bits (69), Expect = 0.41
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 17/86 (19%)
Query: 19 LLCGPPGCGKTLLAKAVANE---AGINFISVKGPELLNM------------YLGESERAV 63
L GP G GKT LAK +A I + E + Y+G E
Sbjct: 57 LFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGG- 115
Query: 64 RQCFQRARNSQPCVIFFDEIDALCPK 89
Q + R VI FDEI+ P
Sbjct: 116 -QLTEAVRRRPYSVILFDEIEKAHPD 140
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 30.3 bits (68), Expect = 0.45
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINF--ISVKGPELLNMYLGESERAVRQCFQ 68
+ + G G GK+ L K + + + G +L R V Q
Sbjct: 32 IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQ 84
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 29.9 bits (66), Expect = 0.48
Identities = 17/147 (11%), Positives = 37/147 (25%), Gaps = 2/147 (1%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
+ G GKT L K + I + + + + R + +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64
Query: 78 IFFDEIDALCPKRSSLG--DNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIIDPAV 135
+ + AL + D ++ ++ EG + D
Sbjct: 65 VASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRP 124
Query: 136 MRPGRFDRILFVNLPNEQDRKEILLAL 162
++ V + LL +
Sbjct: 125 EELVIDRHVIAVASDVPLNLDVALLDI 151
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.3 bits (67), Expect = 0.52
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 18 VLLCGPPGCGKTLLAKAVANEA 39
+L G G GKTLL A
Sbjct: 29 ILATGATGTGKTLLVSRFVENA 50
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 30.1 bits (66), Expect = 0.54
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 8 KLFGKSTPSG--VLLCGPPGCGKTLLAKAVANEAGI-NFISVKGPELLNMYLGESERAVR 64
L G +G L G GK+ L +A I I + L + + R VR
Sbjct: 25 TLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR 84
Query: 65 QCFQRAR 71
R
Sbjct: 85 LVSIAQR 91
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.1 bits (66), Expect = 0.56
Identities = 13/105 (12%), Positives = 27/105 (25%), Gaps = 6/105 (5%)
Query: 8 KLFGKSTPSG--VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQ 65
KL G S G GKT L+ + A + + +
Sbjct: 28 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLP----GAGGYPGGKIIFIDTENTF 83
Query: 66 CFQRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEM 110
R R+ + + + M +++ + +
Sbjct: 84 RPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKF 128
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 29.8 bits (67), Expect = 0.61
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 18 VLLCGPPGCGKTLLAKAVA--NEAGINFISVKGPELLNMYLGESERAVRQCFQ 68
V L G G GK+ +A + + I + G +L L V Q
Sbjct: 44 VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ 96
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 29.1 bits (64), Expect = 0.63
Identities = 10/55 (18%), Positives = 13/55 (23%), Gaps = 10/55 (18%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARN 72
L P G GK+ A G + V P + A
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQG-YKVLVLNPSVA---------ATLGFGAYMSK 55
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.0 bits (66), Expect = 0.66
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 8 KLFGKSTPSG--VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQ 65
+ P G L+ G G GKTL + I F + E+ + + +
Sbjct: 17 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV----FVTFEETPQDIIK 72
Query: 66 CFQR 69
+
Sbjct: 73 NARS 76
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor,
MarR {Escherichia coli [TaxId: 562]}
Length = 138
Score = 29.2 bits (65), Expect = 0.68
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 150 PNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVK 199
PN D++ +L+ LT G + E + + ++ L
Sbjct: 82 PNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLHQELTKNLTADEVATLEY 131
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 29.7 bits (66), Expect = 0.73
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 7 PKLFGKSTPSGVLLCGPPGCGKT 29
PK+ P ++L G G GK
Sbjct: 4 PKVIPDKIPYVIMLVGVQGTGKA 26
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 29.9 bits (67), Expect = 0.73
Identities = 3/29 (10%), Positives = 8/29 (27%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
+ + G G G + + +
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQIFRREGVKA 35
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 29.7 bits (65), Expect = 0.75
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARN 72
+ G G GKT LA +A + + E+ + + A+N
Sbjct: 39 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN 93
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 29.5 bits (66), Expect = 0.80
Identities = 13/99 (13%), Positives = 22/99 (22%), Gaps = 1/99 (1%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
V L G G GKT A+A + +
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR-IF 93
Query: 78 IFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGR 116
+ L + D R + + + + R
Sbjct: 94 PELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER 132
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 29.1 bits (64), Expect = 0.96
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINF 43
+++ GP G GK+ L K + E +F
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 29.1 bits (65), Expect = 0.99
Identities = 12/62 (19%), Positives = 23/62 (37%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
++L GP GCGKT + +A + + + L + + A Q
Sbjct: 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91
Query: 78 IF 79
++
Sbjct: 92 LY 93
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance
transcriptional regulator OhrR {Bacillus subtilis
[TaxId: 1423]}
Length = 137
Score = 28.4 bits (63), Expect = 1.0
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 142 DRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVK 199
+ L +E+D + +L++LT+ G + E D SG DL+QL
Sbjct: 73 QQGLITRKRSEEDERSVLISLTEDGAL--LKEKAV-DIPGTILGLSKQSGEDLKQLKS 127
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.1 bits (64), Expect = 1.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINF 43
V+L GP G GK+ L K + E F
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIF 28
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 28.8 bits (64), Expect = 1.1
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 17 GVLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51
GVLL G G GK+ A + F+ E+
Sbjct: 17 GVLLTGRSGIGKSECALDLI-NKNHLFVGDDAIEI 50
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 28.8 bits (63), Expect = 1.1
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 8 KLFGKSTPSGVLLCGPPGCGKTLLAKAVANE--------AGINFISV--KGPELLNMYLG 57
KL+G + +L+ G G GKT + + G N ++ K +L LG
Sbjct: 10 KLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLG 69
Query: 58 ESERAVRQCFQRARNSQPCVIFFDEIDALCP 88
++ + D D
Sbjct: 70 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRM 100
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 29.0 bits (65), Expect = 1.2
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 8 KLFGKSTP--SGVLLCGPPGCGKTLLAKAVANEAGINFISV 46
K F K TP + ++ CGP GK+ + + IS
Sbjct: 44 KSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF 84
>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 28.3 bits (62), Expect = 1.2
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 17/94 (18%)
Query: 277 SGYEESELYRRSRIEKWSVWSVE-------GGLQTIVNTLGEHLSNK-VEVKMDTTCTNL 328
+GY E+ + I E L N VEV + +
Sbjct: 30 AGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV 89
Query: 329 EFLEKGVKVTL---------NNDQHIEANHVVSA 353
+ G++V++ + + ++ A
Sbjct: 90 KKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWA 123
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 29.1 bits (64), Expect = 1.3
Identities = 16/170 (9%), Positives = 42/170 (24%), Gaps = 22/170 (12%)
Query: 18 VLLCGPPGCGKT-----LLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARN 72
+L+ G G GK+ L + + + G ++L+ + + + + QR +
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG-DMLSKFGRDKDIILNPYDQRTKG 111
Query: 73 SQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNRPDIID 132
++ D R ++ E +
Sbjct: 112 WSFFNEIRNDYDW--------------QRYALSVVPRGKTDEAEE--WASYGRLLLRETA 155
Query: 133 PAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAA 182
+ G + ++ L + + + K
Sbjct: 156 KKLALIGTPSMRELFHWTTIATFDDLRGFLEGTLAESLFAGSNEASKALT 205
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 29.2 bits (64), Expect = 1.3
Identities = 31/263 (11%), Positives = 65/263 (24%), Gaps = 23/263 (8%)
Query: 10 FGKSTPSGVLLCGPPGCGKTLLAKAVA---NEAGIN--FISVKGPELLNMYLGESERAVR 64
F ++ P + G G GKT ++ A A E G +S + ++
Sbjct: 3 FLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTI 62
Query: 65 QCFQRARNSQPCVIFF-DEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMA 123
Q I + +V+ + ++ G
Sbjct: 63 QAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDE 122
Query: 124 ATN-------RPDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVD 176
T I + LP PM G +
Sbjct: 123 FTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQ 182
Query: 177 FDKIAADERCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDI 236
++ A LV ++ + E+ + G+ ++ +
Sbjct: 183 REQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGL----------KNQYL 232
Query: 237 ALKRIKPSVSKADCKNYESLKQR 259
+ + P A+ ++ +R
Sbjct: 233 VINGVLPKTEAANDTLAAAIWER 255
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.1 bits (61), Expect = 1.4
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 18 VLLCGPPGCGKTLLA 32
+L PG GKT
Sbjct: 10 TVLDFHPGAGKTRRF 24
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 28.3 bits (62), Expect = 1.5
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINF 43
++L G G G+ + + + F
Sbjct: 6 LVLLGAHGVGRRHIKNTLITKHPDRF 31
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 28.3 bits (63), Expect = 1.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 17 GVLLCGPPGCGKTLLA 32
GVL+ G G GK+ A
Sbjct: 16 GVLITGDSGVGKSETA 31
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.8 bits (63), Expect = 1.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 18 VLLCGPPGCGKTLLAKAVA 36
L P G GK++LA +A
Sbjct: 32 GALVSPGGAGKSMLALQLA 50
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 28.6 bits (63), Expect = 1.6
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 11 GKSTPSGVLLCGPPGCGKTLLAKAVA---NEAGINFISVKGPELLNMYLGESER 61
G P + GP G GK+ + + E S+ + + YL ++
Sbjct: 23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQ 76
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 29.0 bits (63), Expect = 1.6
Identities = 15/114 (13%), Positives = 39/114 (34%), Gaps = 14/114 (12%)
Query: 291 EKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKVTL----------- 339
+ +S GG+QT+ + + + L + E+++++ L
Sbjct: 219 RQRGSFSFLGGMQTLTDAICKDL-REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHK 277
Query: 340 NNDQHIEANHVVSALPAPKLGML--LHKQHPTLGNLLSSIEHVNVAVINLAYEN 391
+ + V+ P + + + +P L N + + N + A +
Sbjct: 278 RQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNYDSVLDAIDK 331
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.4 bits (63), Expect = 1.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 17 GVLLCGPPGCGKTLLA 32
GVL+ G G GK+ A
Sbjct: 17 GVLITGDSGIGKSETA 32
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 28.4 bits (62), Expect = 1.6
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 18 VLLCGPPGCGKTLLAKAVANE 38
V+L GP GK+ + + +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRER 25
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.0 bits (64), Expect = 1.6
Identities = 31/254 (12%), Positives = 67/254 (26%), Gaps = 30/254 (11%)
Query: 170 MMGEDVDFDKIAADERCEGFSGADLE----------QLVKEAREQAILEIVNSVENDDQA 219
++G D+DF E S LV E L I N+++ND
Sbjct: 59 LLGHDIDF---GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-INNAIKND--- 111
Query: 220 GIDDTEQVTIG--------FRHFDIALKRIKPSVSKADCKNYESLKQRYTTPGAIKEMMS 271
+ +G ++A + K + + + +
Sbjct: 112 -LASRNPTFMGLALHCIANVGSREMAEAFA-GEIPKILVAGDTMDSVKQSAALCLLRLYR 169
Query: 272 KRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNL-EF 330
PDL + + V +++ TL + + + + + L
Sbjct: 170 TSPDLVPMGDWTSRVVHLLN-DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRI 228
Query: 331 LEKGVKVTLNNDQHIEANHVVSALPAPKLGMLLHKQHPTLGNLLS-SIEHVNVAVINLAY 389
+ + + +S L + P + L+ +E +
Sbjct: 229 VTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPK 288
Query: 390 ENIPMKQNAFGFLV 403
NA ++
Sbjct: 289 SKKVQHSNAKNAVL 302
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 137
Score = 27.7 bits (61), Expect = 1.7
Identities = 14/112 (12%), Positives = 37/112 (33%), Gaps = 14/112 (12%)
Query: 101 RIVNQLLTEMDGFEGRGGVFLMAATNRP-----DIIDPAVMRPGRFDRIL--------FV 147
+++ L+ + + R V L A +R ++ + R+L
Sbjct: 15 AELDRRLSHLGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVR 74
Query: 148 NLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVK 199
L +DR+ + LT + ++ + ++ G ++ +
Sbjct: 75 RLAVAEDRRAKHIVLTPKADV-LIADIEAIAASVRNDVLTGIDESEQALCQQ 125
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 27.6 bits (61), Expect = 2.0
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 142 DRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVK 199
+ L N +DR+ I L+LT +G E + K + ++ Q
Sbjct: 75 QKNLIARTHNTKDRRVIDLSLTDEGDI-KFEEVLAGRKAIMARYLSFLTEEEMLQAAH 131
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.3 bits (62), Expect = 2.1
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 18 VLLCGPPGCGKTL 30
++ PG GKT
Sbjct: 12 TIMDLHPGAGKTK 24
>d2fx0a2 a.121.1.1 (A:77-198) Hemolysin II regulatory protein,
HlyIIR {Bacillus cereus [TaxId: 1396]}
Length = 122
Score = 27.1 bits (60), Expect = 2.3
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 119 VFLMAATNRPDIIDPA----VMRPGRFDRILFVNLPNEQDRKEILLALTKQG 166
VF P+I A + R ++I + + + KEIL KQG
Sbjct: 13 VFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLKEILQEGEKQG 64
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 28.0 bits (62), Expect = 2.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 18 VLLCGPPGCGKTLLAKAVA 36
+ + G G GKT L +
Sbjct: 65 LAITGSTGSGKTSLLMLIL 83
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 27.7 bits (61), Expect = 3.0
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 18 VLLCGPPGCGKTLLAKAVA 36
+L GP G GK++ + +A
Sbjct: 27 CVLLGPTGAGKSVFLELIA 45
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 27.8 bits (62), Expect = 3.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 18 VLLCGPPGCGKTLLAKAVA 36
++L GP GCGKT + +A
Sbjct: 35 LVLLGPSGCGKTTTLRMIA 53
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.5 bits (60), Expect = 3.2
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISV 46
++ P G GK+ L +A+ + V
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQV 33
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A
homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Length = 125
Score = 27.0 bits (59), Expect = 3.3
Identities = 7/55 (12%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 142 DRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQ 196
+ ++ D + ++++++ ++ + FD+I + F+ AD +
Sbjct: 76 KHSYISKVRSKIDERNTYISISEEQREKIAERVTLFDQII-----KQFNLADQSE 125
>d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 282
Score = 27.9 bits (62), Expect = 3.4
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 474 EILKACIPQYTLGHAARVKDIQGYIDTH 501
E LK + +G +K G D
Sbjct: 241 EALKHPGEKIIVGFPGLLKIWAGSRDRI 268
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 27.4 bits (60), Expect = 3.6
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 10 FGKSTPSGVLLCGPPGCGK-TLLAK 33
P +++ G G GK T K
Sbjct: 6 VPPEPPFVIMVVGVNGTGKTTSCGK 30
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 3.6
Identities = 30/203 (14%), Positives = 55/203 (27%), Gaps = 35/203 (17%)
Query: 12 KSTPSGVLLCGPPGCGKT----LLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCF 67
+ VL+ G G GKT L + N K + +
Sbjct: 3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLG-------KKVMFCAGDTFRAAGGTQLSE 55
Query: 68 QRARNSQPCVIFFDEIDALCPKRSSLGDNNSSMRIVNQLLTEMDGFEGRGGVFLMAATNR 127
R S P + + D + + RG L T
Sbjct: 56 WGKRLSIPVIQGPEGTD-----------------PAALAYDAVQAMKARGYDLLFVDTAG 98
Query: 128 PDIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCE 187
+M + + + ++ KE+ L L + + F +
Sbjct: 99 RLHTKHNLMEELKK-VKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------ 151
Query: 188 GFSGADLEQLVKEAREQAILEIV 210
G +G + +L A+ ++ IV
Sbjct: 152 GLTGVIVTKLDGTAKGGVLIPIV 174
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 27.8 bits (61), Expect = 3.7
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 460 EILDMPRTPHAQHVEILKACIPQYTLGHAARVKDIQGY 497
LD + ++V+ C P + + HA + Y
Sbjct: 197 SPLDSSYLFNGKNVQAQAVCGPLFVIDHAGSLTSQFSY 234
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 27.3 bits (60), Expect = 3.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 18 VLLCGPPGCGKTLLAKAVA 36
++ GP G GKTL + +A
Sbjct: 29 FVILGPTGAGKTLFLELIA 47
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 27.5 bits (60), Expect = 3.9
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 12 KSTPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRAR 71
S + + + G G GKT L +A NEA V + E + R
Sbjct: 33 GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFR 92
Query: 72 NS--QPCVIFFDEIDALCPKRSS 92
N ++ D++ L K +
Sbjct: 93 NMYKSVDLLLLDDVQFLSGKERT 115
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 27.2 bits (59), Expect = 4.0
Identities = 14/68 (20%), Positives = 27/68 (39%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYLGESERAVRQCFQRARNSQPCV 77
+LL G GKT L K +A+E + +G + ++ + V + +
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWR 78
Query: 78 IFFDEIDA 85
+F+ D
Sbjct: 79 SYFENTDI 86
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia
fasciculata [TaxId: 5656]}
Length = 117
Score = 26.3 bits (57), Expect = 4.2
Identities = 6/70 (8%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Query: 285 YRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVK-VTLNNDQ 343
+ + + + + +N + V+ + G + V +
Sbjct: 45 GQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGA 104
Query: 344 HIEANHVVSA 353
+ + V+ A
Sbjct: 105 EADYDVVMLA 114
>d2zfga1 f.4.3.1 (A:1-340) Porin {Escherichia coli, different
sequences [TaxId: 562]}
Length = 340
Score = 27.5 bits (60), Expect = 4.2
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 211 NSVENDDQAGIDDTEQVTIGFRH 233
N +++D++ G+ + V +G +
Sbjct: 316 NQIDSDNKLGVGSDDTVAVGIVY 338
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.2 bits (60), Expect = 4.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 18 VLLCGPPGCGKTLLAKAVA 36
V+ GP GCGK+ L + +A
Sbjct: 29 VVFVGPSGCGKSTLLRMIA 47
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 27.3 bits (60), Expect = 4.5
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 9/86 (10%)
Query: 10 FGKSTPSGVLLCGPPGCGKT----LLAKAVANE----AGINFISVKGPELLNMYLGESER 61
P +L+ G G GKT LA+ + + + + + +
Sbjct: 4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 63
Query: 62 AVRQCFQRARNSQPCVIFFDEIDALC 87
+ Q + + FD I A
Sbjct: 64 NIPVIAQH-TGADSASVIFDAIQAAK 88
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 27.4 bits (60), Expect = 4.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 18 VLLCGPPGCGKTLLAKAVA 36
+ GP G GKT + +A
Sbjct: 34 FGILGPSGAGKTTFMRIIA 52
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710
{Thermotoga maritima [TaxId: 2336]}
Length = 139
Score = 26.5 bits (58), Expect = 4.8
Identities = 6/54 (11%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 146 FVNLPNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVK 199
P+ DR+ L +T++G++ ++ + ++ + ++ +++
Sbjct: 74 LTRTPDPADRRAYFLVITRKGEE-VIEKVIERRENFIEKITSDLGKEKSSKILD 126
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 27.2 bits (59), Expect = 5.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 18 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 51
+L GPPG GKT A A+A E EL
Sbjct: 48 LLFAGPPGVGKTTAALALARELFGENWRHNFLEL 81
>d1phoa_ f.4.3.1 (A:) Porin {Escherichia coli, different sequences
[TaxId: 562]}
Length = 330
Score = 27.2 bits (59), Expect = 5.4
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 210 VNSVENDDQAGIDDTEQVTIGFRH 233
+N +++D++ I++ + V +G +
Sbjct: 305 INQLDSDNKLNINNDDIVAVGMTY 328
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA
{Salmonella typhimurium [TaxId: 90371]}
Length = 140
Score = 26.5 bits (58), Expect = 5.5
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 150 PNEQDRKEILLALTKQGKDPMMGEDVDFDKIAADERCEGFSGADLEQLVK 199
DR+ + LT++ + ++ E + E G S ++E L+K
Sbjct: 80 TCASDRRAKRIKLTEKAEP-LIAEMEEVIHKTRGEILAGISSEEIELLIK 128
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 26.8 bits (59), Expect = 5.7
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 18 VLLCGPPGCGKTLLAKAVA 36
+ GP G GK+ + +
Sbjct: 31 IAFAGPSGGGKSTIFSLLE 49
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 26.7 bits (58), Expect = 5.7
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 18 VLLCGPPGCGKTLLAKAVAN 37
+ L G GK+ LA + +
Sbjct: 27 IWLTGLSASGKSTLAVELEH 46
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 26.4 bits (58), Expect = 6.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 18 VLLCGPPGCGKTLLAKAVA 36
V GP G GKT L K ++
Sbjct: 30 VNFHGPNGIGKTTLLKTIS 48
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 88
Score = 25.2 bits (55), Expect = 6.7
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 129 DIIDPAVMRPGRFDRILFVNLPNEQDRKEILLALT 163
I + ++ IL V + Q R+ I++ +
Sbjct: 54 IIGNRKKLQEDERFFILIVPITENQFRERIVIGYS 88
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 26.5 bits (57), Expect = 7.3
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 18 VLLCGPPGCGKTLLAKAVA 36
+++ G GK+ + A
Sbjct: 38 IMVTSGSGMGKSTFVRQQA 56
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.5 bits (57), Expect = 7.5
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 18 VLLCGPPGCGKT-LLAKAVANEAGINFISV 46
VL G GKT L + + + S+
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSI 32
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 26.5 bits (58), Expect = 8.6
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 22 GPPGCGKTLLAKAVANEAGINFISV 46
G G GKT A+ + I +
Sbjct: 12 GAYGIGKTTAAEEFLHHFAITPNRI 36
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 26.3 bits (58), Expect = 9.0
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 18 VLLCGPPGCGKTLLAKAVANE 38
V G G GK+ L +
Sbjct: 47 VAFVGMSGGGKSTLINLIPRF 67
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans
[TaxId: 6239]}
Length = 395
Score = 26.3 bits (57), Expect = 9.6
Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 19/142 (13%)
Query: 185 RCEGFSGADLEQLVKEAREQAILEIVNSVENDDQAGIDDTEQVTIGFRHFDIA------- 237
+ SG + + + + D + + D E + +R FD A
Sbjct: 232 LPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVLIDFEYASYNYRAFDFANHFIEWT 291
Query: 238 --LKRIKPSVSKADCKNYESLKQRYTTPGA-IKEMMSKRPDLSGYEESELYRRSRIEK-- 292
+ K +N+ Q ++E + R + + +L + +
Sbjct: 292 IDYDIDEAPFYKIQTENFPENDQMLEFFLNYLREQGNTRENELYKKSEDLVQETLPFVPV 351
Query: 293 ----WSVWSVEGGLQTIVNTLG 310
W VW + LQ ++ +G
Sbjct: 352 SHFFWGVWGL---LQVELSPVG 370
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,043,119
Number of extensions: 96744
Number of successful extensions: 481
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 165
Length of query: 541
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 451
Effective length of database: 1,171,896
Effective search space: 528525096
Effective search space used: 528525096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.9 bits)