BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7674
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
Query: 83 IDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFS 139
++Y N FVD H + K ERT++AQ F+IAVGGRP YPDIPGA GITSDDLFS
Sbjct: 123 VEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFS 182
Query: 140 LNKDPGKVLLVGASYIALECAG 161
L+++PGK L+VGA YI LECAG
Sbjct: 183 LDREPGKTLVVGAGYIGLECAG 204
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
Query: 83 IDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFS 139
++Y N FVD H + K ERT++AQ F+IAVGGRP YPDIPGA GITSDDLFS
Sbjct: 123 VEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFS 182
Query: 140 LNKDPGKVLLVGASYIALECAG 161
L+++PGK L+VGA YI LECAG
Sbjct: 183 LDREPGKTLVVGAGYIGLECAG 204
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
Query: 83 IDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFS 139
++Y N FVD H + K ERT++AQ F+IAVGGRP YPDIPGA GITSDDLFS
Sbjct: 119 VEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFS 178
Query: 140 LNKDPGKVLLVGASYIALECAG 161
L+++PGK L+VGA YI LECAG
Sbjct: 179 LDREPGKTLVVGAGYIGLECAG 200
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
Query: 83 IDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP-DIPGA-HLGITSDDL 137
+ YFN KA FVD+H V+ G+ +SA++ +IA GGRP YP + GA GITSDD+
Sbjct: 145 VKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDI 204
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
F L + PGK L+VGASY+ALECAG
Sbjct: 205 FWLKESPGKTLVVGASYVALECAG 228
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
Query: 83 IDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP-DIPGA-HLGITSDDL 137
+ YFN KA FVD+H V+ G+ +SA++ +IA GGRP YP + GA GITSDD+
Sbjct: 119 VKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDI 178
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
F L + PGK L+VGASY+ALECAG
Sbjct: 179 FWLKESPGKTLVVGASYVALECAG 202
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 83 IDYFNAKAVFVDKHRVKFAGEER---TVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLF 138
+ Y NAK + H V+ + + T++ I+A G RP YP+IPGA GITSDDLF
Sbjct: 221 VTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLF 280
Query: 139 SLNKDPGKVLLVGASYIALECAG 161
SL PGK L++GASY+ALECAG
Sbjct: 281 SLPYFPGKTLVIGASYVALECAG 303
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 16 VELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVI 57
+ELD+L NG+ IQ L + +TVP +F+ GK I ++ V+
Sbjct: 48 IELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVL 89
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 48 KHIDNNSVVIFSKSWCPFCTK 68
K +D+ +V++FSK+ CP+C K
Sbjct: 13 KTVDSAAVILFSKTTCPYCKK 33
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 83 IDYFNAKAVFVDKHRVKFAGEER---TVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLF 138
+ Y NAK + H V+ + + T++ I+A G RP YP+IPGA GITSDDLF
Sbjct: 221 VTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLF 280
Query: 139 SLNKDPGKVLLVGASYIALECAG 161
SL PGK L++GASY+ALECAG
Sbjct: 281 SLPYFPGKTLVIGASYVALECAG 303
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 16 VELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVI 57
+ELD+L NG+ IQ L + +TVP +F+ GK I ++ V+
Sbjct: 48 IELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVL 89
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 48 KHIDNNSVVIFSKSWCPFCTK 68
K +D+ +V++FSK+ CP+C K
Sbjct: 13 KTVDSAAVILFSKTTCPYCKK 33
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 83 IDYFNAKAVFVDKHRVKFAGEER---TVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLF 138
+ Y NAK + H V+ + + T++ I+A G RP YP+IPGA GITSDDLF
Sbjct: 221 VTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLF 280
Query: 139 SLNKDPGKVLLVGASYIALECAG 161
SL PGK L++GASY+ALECAG
Sbjct: 281 SLPYFPGKTLVIGASYVALECAG 303
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 16 VELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVI 57
+ELD+L NG+ IQ L + +TVP +F+ GK I ++ V+
Sbjct: 48 IELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVL 89
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 48 KHIDNNSVVIFSKSWCPFCTK 68
K +D+ +V++FSK+ CP+C K
Sbjct: 13 KTVDSAAVILFSKTTCPYCKK 33
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 85 YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLFSL 140
Y NA F+ HR+K G+E+ SA+ F+IA G RP Y IPG I+SDDLFSL
Sbjct: 141 YENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 200
Query: 141 NKDPGKVLLVGASYIALECAG 161
PGK L+VGASY+ALECAG
Sbjct: 201 PYCPGKTLVVGASYVALECAG 221
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 85 YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLFSL 140
Y NA F+ HR+K G+E+ SA+ F+IA G RP Y IPG I+SDDLFSL
Sbjct: 147 YENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 206
Query: 141 NKDPGKVLLVGASYIALECAG 161
PGK L+VGASY+ALECAG
Sbjct: 207 PYCPGKTLVVGASYVALECAG 227
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 85 YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLFSL 140
Y NA F+ HR+K G+E+ SA+ F+IA G RP Y IPG I+SDDLFSL
Sbjct: 147 YENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 206
Query: 141 NKDPGKVLLVGASYIALECAG 161
PGK L+VGASY+ALECAG
Sbjct: 207 PYCPGKTLVVGASYVALECAG 227
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 85 YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLFSL 140
Y NA F+ HR+K G+E+ SA+ F+IA G RP Y IPG I+SDDLFSL
Sbjct: 149 YENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 208
Query: 141 NKDPGKVLLVGASYIALECAG 161
PGK L+VGASY+ALECAG
Sbjct: 209 PYCPGKTLVVGASYVALECAG 229
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 55/86 (63%), Gaps = 7/86 (8%)
Query: 83 IDYFNAKAVFVDKHRVKF-----AGEERTVSAQNFIIAVGGRPTYPD-IPGA-HLGITSD 135
+ Y N A DK+ V + +E TV+ + +IA G RP PD + GA L ITSD
Sbjct: 155 VKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPDDVEGAKELSITSD 214
Query: 136 DLFSLNKDPGKVLLVGASYIALECAG 161
D+FSL KDPGK L+VGASY+ALEC+G
Sbjct: 215 DIFSLKKDPGKTLVVGASYVALECSG 240
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 85 YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLFSL 140
Y NA F+ H++ G+E+ SA+ F+IA G RP Y IPG I+SDDLFSL
Sbjct: 127 YENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 186
Query: 141 NKDPGKVLLVGASYIALECAG 161
PGK L+VGASY+ALECAG
Sbjct: 187 PYCPGKTLVVGASYVALECAG 207
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 85 YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLFSL 140
Y NA F+ H++ G+E+ SA+ F+IA G RP Y IPG I+SDDLFSL
Sbjct: 127 YENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 186
Query: 141 NKDPGKVLLVGASYIALECAG 161
PGK L+VGASY+ALECAG
Sbjct: 187 PYCPGKTLVVGASYVALECAG 207
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 83 IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNK 142
I + A FVD H ++ G+ +SA + +IA GGRP P +PGA LGITSD F+L +
Sbjct: 107 ITRVDGHARFVDAHTIEVEGQR--LSADHIVIATGGRPIVPRLPGAELGITSDGFFALQQ 164
Query: 143 DPGKVLLVGASYIALECAGC 162
P +V ++GA YI +E AG
Sbjct: 165 QPKRVAIIGAGYIGIELAGL 184
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 83 IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNK 142
+D A FVD ++ GE T++A + +IA GGRP++PDIPG GI SD F+L
Sbjct: 108 VDVIKGFARFVDAKTLEVNGE--TITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPA 165
Query: 143 DPGKVLLVGASYIALECAG 161
P +V +VGA YIA+E AG
Sbjct: 166 LPERVAVVGAGYIAVELAG 184
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 83 IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNK 142
+D A FVD ++ GE T++A + +IA GGRP++PDIPG GI SD F+L
Sbjct: 108 VDVIKGFARFVDAKTLEVNGE--TITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPA 165
Query: 143 DPGKVLLVGASYIALECAG 161
P +V +VGA YI +E G
Sbjct: 166 LPERVAVVGAGYIGVELGG 184
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83 IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
I+ A F K ++ +G++ T A + +IA GG P+ P IPGA LGITSD
Sbjct: 123 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
F L + PG+ ++VGA YIA+E AG
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAG 204
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83 IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
I+ A F K ++ +G++ T A + +IA GG P+ P IPGA LGITSD
Sbjct: 123 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
F L + PG+ ++VGA YIA+E AG
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAG 204
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83 IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
I+ A F K ++ +G++ T A + +IA GG P+ P IPGA LGITSD
Sbjct: 123 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
F L + PG+ ++VGA YIA+E AG
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAG 204
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83 IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
I+ A F K ++ +G++ T A + +IA GG P+ P IPGA LGITSD
Sbjct: 124 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 181
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
F L + PG+ ++VGA YIA+E AG
Sbjct: 182 FQLEELPGRSVIVGAGYIAVEMAG 205
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83 IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
I+ A F K ++ +G++ T A + +IA GG P+ P IPGA LGITSD
Sbjct: 108 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 165
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
F L + PG+ ++VGA YIA+E AG
Sbjct: 166 FQLEELPGRSVIVGAGYIAVEMAG 189
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83 IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
I+ A F K ++ +G++ T A + +IA GG P+ P IPGA LGITSD
Sbjct: 106 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 163
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
F L + PG+ ++VGA YIA+E AG
Sbjct: 164 FQLEELPGRSVIVGAGYIAVEMAG 187
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83 IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
I+ A F K ++ +G++ T A + +IA GG P+ P IPGA LGITSD
Sbjct: 106 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 163
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
F L + PG+ ++VGA YIA+E AG
Sbjct: 164 FQLEELPGRSVIVGAGYIAVEMAG 187
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83 IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
I+ A F K ++ +G++ T A + +IA GG P+ P IPGA LGITSD
Sbjct: 122 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 179
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
F L + PG+ ++VGA YIA+E AG
Sbjct: 180 FQLEELPGRSVIVGAGYIAVEMAG 203
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83 IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
I+ A F K ++ +G++ T A + +IA GG P+ P IPGA LGITSD
Sbjct: 123 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
F L + PG+ ++VGA YIA+E AG
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAG 204
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83 IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
I+ A F K ++ +G++ T A + +IA GG P+ P IPGA LGITSD
Sbjct: 123 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
F L + PG+ ++VGA YIA+E AG
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAG 204
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 9 PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS 54
P V+ELD++ NG++IQ AL E +GQKTVPN++I+GKHI NS
Sbjct: 64 PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNS 109
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 9 PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS 54
P V+ELD++ NG++IQ AL E +GQKTVPN++I+GKHI NS
Sbjct: 47 PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNS 92
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 9 PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS 54
P V+ELD++ NG++IQ AL E +GQKTVPN++I+GKHI NS
Sbjct: 44 PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNS 89
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 108 SAQNFIIAVGGRPTYPD-IPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGC 162
SA + ++A GG+ +P+ IPG LG SD F L + P KV++VGA YI +E AG
Sbjct: 148 SANHILVATGGKAIFPENIPGFELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGV 203
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 83 IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAHLGITSDDLFSLN 141
+ + ++AVFVD+H ++ + +SA+ +IA G + + I G+ L +TS+++F L
Sbjct: 129 VHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNEIFDLE 188
Query: 142 KDPGKVLLVGASYIALECA 160
K P +++VG YI +E A
Sbjct: 189 KLPKSIVIVGGGYIGVEFA 207
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 84 DYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGAHLGITSDDLFSLNK 142
+ + +A + VK +TV+A+ +IAVGG P+ D +PG L ITS++ F L
Sbjct: 109 EILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPA 168
Query: 143 DPGKVLLVGASYIALECA 160
P +L+ G YIA+E A
Sbjct: 169 LPESILIAGGGYIAVEFA 186
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1
From Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1
From Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1
From Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1
From Populus Tremula X Tremuloides
Length = 116
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVI 57
+++VVELD+L +G+Q+Q+AL TG+ TVPN+FI GK I V+
Sbjct: 46 SYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVV 91
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 117
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVI 57
+++VVELD+L +G+Q+Q+AL TG+ TVPN+FI GK I V+
Sbjct: 47 SYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVV 92
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 9 PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN 53
P V++L+ + GA IQ AL+E GQ+TVPNI+I+GKHI N
Sbjct: 52 PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGN 96
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 9 PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN 53
P V++L+ + GA IQ AL+E GQ+TVPNI+I+GKHI N
Sbjct: 44 PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGN 88
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 9 PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN 53
P V++L+ + GA IQ AL+E GQ+TVPNI+I+GKHI N
Sbjct: 288 PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGN 332
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 50.4 bits (119), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 83 IDYFNAKAVFVDKHRVKFAG------------EERTVSAQNFIIAVGGRPTYPDIPGAHL 130
+D + A F+ ++R+ G E + +N +IAVG +P +P + G
Sbjct: 104 VDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGIEN 163
Query: 131 GITSDDLFSLNKDPGKVLLVGASYIALE 158
I+SD+ F++ K+ K+ +VG+ YIA+E
Sbjct: 164 TISSDEFFNI-KESKKIGIVGSGYIAVE 190
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
N++VVELD L G Q Q AL++ TG++TVP IF++G I
Sbjct: 75 NYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFI 113
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 50 IDNNSVVIFSKSWCPFCTKA 69
I +N VVIFSK+ C +CT A
Sbjct: 46 ISDNCVVIFSKTSCSYCTMA 65
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
N++VVELD L G Q Q AL++ TG++TVP IF++G I
Sbjct: 61 NYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFI 99
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 50 IDNNSVVIFSKSWCPFCTKA 69
I +N VVIFSK+ C +CT A
Sbjct: 32 ISDNCVVIFSKTSCSYCTMA 51
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
N++VVELD L G Q Q AL++ TG++TVP IF++G I
Sbjct: 53 NYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFI 91
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 50 IDNNSVVIFSKSWCPFCTKA 69
I +N VVIFSK+ C +CT A
Sbjct: 24 ISDNCVVIFSKTSCSYCTMA 43
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5
From Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5
From Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5
From Arabidopsis Thaliana
Length = 113
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 15 VVELDKL-PNGAQIQTALFERTGQKTVPNIFIHGKHI 50
VVELD+L P G Q+Q L TGQ TVPN+F+ GKHI
Sbjct: 48 VVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHI 84
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 48 KHIDNNSVVIFSKSWCPFCTK 68
K + N+VVI+SK+WC +CT+
Sbjct: 14 KTVTENTVVIYSKTWCSYCTE 34
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 87 NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGK 146
+A V V K + T+ + +IA G PT +PG ITS++ F L P +
Sbjct: 151 DAHTVVVRKSEDPHSDVLETLDTEYILIATGSWPTRLGVPGDEFCITSNEAFYLEDAPKR 210
Query: 147 VLLVGASYIALECAG 161
+L VG YIA+E AG
Sbjct: 211 MLCVGGGYIAVEFAG 225
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 87 NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGK 146
+A V V K + T+ + +IA G PT +PG ITS++ F L P +
Sbjct: 151 DAHTVVVRKSEDPHSDVLETLDTEYILIATGSWPTRLGVPGDEFCITSNEAFYLEDAPKR 210
Query: 147 VLLVGASYIALECAG 161
+L VG YIA+E AG
Sbjct: 211 MLCVGGGYIAVEFAG 225
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECA 160
A +ER + +N ++A G P P+IPG I+S++ F L + P +VL VG +I++E A
Sbjct: 146 AVKER-LETENILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFA 204
Query: 161 G 161
G
Sbjct: 205 G 205
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 15 VVELDKL-PNGAQIQTALFERTGQKTVPNIFIHGKHI 50
VVELD+L G QIQ L TGQ TVPN+FI GKHI
Sbjct: 47 VVELDELGAQGPQIQKVLERLTGQHTVPNVFIGGKHI 83
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 48 KHIDNNSVVIFSKSWCPFCTK 68
K + N VV++SK+WC + ++
Sbjct: 13 KTVAENPVVVYSKTWCSYSSE 33
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 15 VVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
V+ELD++ +GA++Q L E T QKTVPNIF++ H+
Sbjct: 46 VLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHV 81
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 50 IDNNSVVIFSKSWCPFCTK 68
I+ + VVIFSKS+CP T+
Sbjct: 14 IERSRVVIFSKSYCPHSTR 32
>pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h.
pdb|3IC9|B Chain B, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h.
pdb|3IC9|C Chain C, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h.
pdb|3IC9|D Chain D, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h
Length = 492
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 84 DYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI---PGAHLGITSDDLFSL 140
D A F+D+H ++ + V A+ +IA G RP YP+ G+ L +T+D+LF L
Sbjct: 113 DKIRGFAKFLDEHTLQ-VDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRL-LTNDNLFEL 170
Query: 141 NKDPGKVLLVGASYIALEC 159
N P V + G I LE
Sbjct: 171 NDLPKSVAVFGPGVIGLEL 189
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECA 160
A +ER + ++ ++A G P P+IPG I+S++ F L + P +VL VG +I++E A
Sbjct: 146 AVKER-LETEHILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFA 204
Query: 161 G 161
G
Sbjct: 205 G 205
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECA 160
A +ER + ++ ++A G P P+IPG I+S++ F L + P +VL VG +I++E A
Sbjct: 145 AVKER-LETEHILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFA 203
Query: 161 G 161
G
Sbjct: 204 G 204
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECA 160
A +ER + ++ ++A G P P+IPG I+S++ F L + P +VL VG +I++E A
Sbjct: 147 AVKER-LETEHILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFA 205
Query: 161 G 161
G
Sbjct: 206 G 206
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 105 RTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
T+ + ++A G P + I G L ITS++ F L++ P + L VG YI++E AG
Sbjct: 149 ETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAG 205
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 105 RTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
T+ + ++A G P + I G L ITS++ F L++ P + L VG YI++E AG
Sbjct: 148 ETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAG 204
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 105 RTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
T+ + ++A G P + I G L ITS++ F L++ P + L VG YI++E AG
Sbjct: 148 ETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAG 204
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 105 RTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
T+ + ++A G P + I G L ITS++ F L++ P + L VG YI++E AG
Sbjct: 149 ETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAG 205
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 102 GEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLF----SLNKDPGKVLLVGASYIAL 157
G+E + IIA G +PG +TSDD+F S K P ++++GA YI L
Sbjct: 126 GKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGL 185
Query: 158 ECA 160
E A
Sbjct: 186 EIA 188
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 86 FNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDD---LFSLNK 142
N A +D H V+ AG + A+N I+AVG P D+PG + D + L+
Sbjct: 154 LNCPAKVIDNHTVEAAG--KVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDY 211
Query: 143 DPGK-VLLVGASYIALECAGC 162
+PG V++VG S A+E GC
Sbjct: 212 EPGSTVVVVGGSKTAVEY-GC 231
>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera
pdb|1ZX9|A Chain A, Crystal Structure Of Tn501 Mera
Length = 467
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 102 GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--ITSDDLFSLNKDPGKVLLVGASYIALEC 159
G ER V ++A G P P IPG TS + + + P ++ ++G+S +ALE
Sbjct: 132 GGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASDTIPERLAVIGSSVVALEL 191
Query: 160 A 160
A
Sbjct: 192 A 192
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHG 47
N+ ++ELDK +G ++Q + TG+ TVPN+ ++G
Sbjct: 43 NYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNG 78
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 52 NNSVVIFSK--SWCPFCTKAXXXXXXXXXXXXXIDYFNAKAVFVDKHRVKFAGEE--RTV 107
N + F+K W K ++ +A FVD + V+ + +T
Sbjct: 73 ENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTY 132
Query: 108 SAQNFIIAVGGRP-TYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALE 158
+ +N IIA G RP P+ ++ + S +L + P ++++G YI +E
Sbjct: 133 TFKNAIIATGSRPIELPNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIE 184
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 102 GEERTVSAQNFIIAVGGRPTYPDIPGAHLG----ITSDDLFSLNKDPGKVLLVGASYIAL 157
GE V ++ IIA G +PG + ++S +L++ P K++++GA YI L
Sbjct: 133 GENTVVKGKHIIIATG--SDVKSLPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGL 190
Query: 158 E 158
E
Sbjct: 191 E 191
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 103 EERTVSAQNFIIAVGGRPTYPDIPG-----AHLGITSDD---LFSLNKDPGKVLLVGASY 154
EE+T + I+ G +PT P IPG +L +D LF + ++G+ Y
Sbjct: 100 EEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGY 159
Query: 155 IALECA 160
I E A
Sbjct: 160 IGAELA 165
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 18/74 (24%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLF--------------SLNKDPGK 146
+GEER + II+ G P DIPG L D+++ +++ +
Sbjct: 96 SGEERVENYDKLIISPGAVPFELDIPGKDL----DNIYLMRGRQWAIKLKQKTVDPEVNN 151
Query: 147 VLLVGASYIALECA 160
V+++G+ YI +E A
Sbjct: 152 VVVIGSGYIGIEAA 165
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 18/74 (24%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLF--------------SLNKDPGK 146
+GEER + II+ G P DIPG L D+++ +++ +
Sbjct: 96 SGEERVENYDKLIISPGAVPFELDIPGKDL----DNIYLMRGRQWAIKLKQKTVDPEVNN 151
Query: 147 VLLVGASYIALECA 160
V+++G+ YI +E A
Sbjct: 152 VVVIGSGYIGIEAA 165
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 18/74 (24%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLF--------------SLNKDPGK 146
+GEER + II+ G P DIPG L D+++ +++ +
Sbjct: 96 SGEERVENYDKLIISPGAVPFELDIPGKDL----DNIYLMRGRQWAIKLKQKTVDPEVNN 151
Query: 147 VLLVGASYIALECA 160
V+++G+ YI +E A
Sbjct: 152 VVVIGSGYIGIEAA 165
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 18/74 (24%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLF--------------SLNKDPGK 146
+GEER + II+ G P DIPG L D+++ +++ +
Sbjct: 96 SGEERVENYDKLIISPGAVPFELDIPGKDL----DNIYLMRGRQWAIKLKQKTVDPEVNN 151
Query: 147 VLLVGASYIALECA 160
V+++G+ YI +E A
Sbjct: 152 VVVIGSGYIGIEAA 165
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 22/96 (22%)
Query: 44 FIHGKHIDNNSVVIFSKSWCPFCTKAXXXXXXXXXXXXXIDYFNAKAVFVDKHRVKFAGE 103
++ +H S+ IF+K CPFC KA I G
Sbjct: 161 YLAPQHQVQESISIFTKPGCPFCAKAKQLLHDKGLSFEEI----------------ILGH 204
Query: 104 ERTVSAQNFIIAVGGRPTYPD--IPGAHLGITSDDL 137
+ T+ + + AV GR T P I G H+G SDDL
Sbjct: 205 DATIVS---VRAVSGRTTVPQVFIGGKHIG-GSDDL 236
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 35 TGQKTVPNIFIHGKHI 50
+G+ TVP +FI GKHI
Sbjct: 215 SGRTTVPQVFIGGKHI 230
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 102 GEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDL-------FSLNKDPGKVLLVGASY 154
G+ + + A+N IIA G RP +IP A L SDD+ P K+ ++GA
Sbjct: 136 GKTQVLEAENVIIASGSRPV--EIPPAPL---SDDIIVDSTGALEFQAVPKKLGVIGAGV 190
Query: 155 IALEC 159
I LE
Sbjct: 191 IGLEL 195
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 18/74 (24%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLF--------------SLNKDPGK 146
+GEER + II+ G P DIPG L D+++ +++ +
Sbjct: 96 SGEERVENYDKLIISPGAVPFELDIPGKDL----DNIYLMRGRQWAIKLKQKTVDPEVNN 151
Query: 147 VLLVGASYIALECA 160
V+++G+ YI +E A
Sbjct: 152 VVVIGSGYIGIEAA 165
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 18/74 (24%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLF--------------SLNKDPGK 146
+GEER + II+ G P DIPG L D+++ +++ +
Sbjct: 96 SGEERVENYDKLIISPGAVPFELDIPGKDL----DNIYLMRGRQWAIKLKQKTVDPEVNN 151
Query: 147 VLLVGASYIALECA 160
V+++G+ YI +E A
Sbjct: 152 VVVIGSGYIGIEAA 165
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
+FQ + +D A + + +R+G+ TVP IFI +HI
Sbjct: 27 SFQELPID---GNAAKREEMIKRSGRTTVPQIFIDAQHI 62
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully
Oxidized Form
Length = 82
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
+FQ + +D A + + +R+G+ TVP IFI +HI
Sbjct: 27 SFQELPID---GNAAKREEMIKRSGRTTVPQIFIDAQHI 62
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 25/97 (25%)
Query: 54 SVVIFSKSWCPFCTKAXXXXXXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVS-AQNF 112
++++++ CP+C +A +DK VK+ + + S Q
Sbjct: 7 EIILYTRPNCPYCKRARD--------------------LLDKKGVKYTDIDASTSLRQEM 46
Query: 113 IIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGKV 147
+ GR T+P I H+G DDL++L ++ GK+
Sbjct: 47 VQRANGRNTFPQIFIGDYHVG-GCDDLYAL-ENKGKL 81
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 94 DKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG--AHLG------ITSDDLFSLNKDPG 145
D H V A + +T A++ IIA GG P I G + G T D F NK+
Sbjct: 88 DSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKE-- 145
Query: 146 KVLLVGASYIALECA 160
V ++G A+E A
Sbjct: 146 -VAVLGGGDTAVEEA 159
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 48 KHIDNNSVVIFSKSWCPFCTKA 69
+ + NN V IF K CPFC A
Sbjct: 14 QRLANNKVTIFVKYTCPFCRNA 35
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 83 IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG----ITSDDLF 138
I A F+ + +V + A+ +IA G P P P A + +TS +
Sbjct: 104 IARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIP--PWAQVDYERVVTSTEAL 161
Query: 139 SLNKDPGKVLLVGASYIALEC 159
S + P ++++VG I LE
Sbjct: 162 SFPEVPKRLIVVGGGVIGLEL 182
>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 83 IDYFNAKAVFVDKHRVKFA-------------GEERTVSAQNFIIAVGGRPT-YPDIPGA 128
+D F+D H ++ + GE++ V+ +N IIA G R T P IP
Sbjct: 110 VDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPED 169
Query: 129 HLGITSDDLFSLNKDPGKVLL 149
I S +L + PGK+L+
Sbjct: 170 PRIIDSSGALALKEVPGKLLI 190
>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From
Masc Data
Length = 482
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 83 IDYFNAKAVFVDKHRVKFA-------------GEERTVSAQNFIIAVGGRPT-YPDIPGA 128
+D F+D H ++ + GE++ V+ +N IIA G R T P IP
Sbjct: 110 VDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPED 169
Query: 129 HLGITSDDLFSLNKDPGKVLL 149
I S +L + PGK+L+
Sbjct: 170 PRIIDSSGALALKEVPGKLLI 190
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 108 SAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPG 145
S +NF + G+ PD+ GIT D + +L K+ G
Sbjct: 218 SGENFFLVNRGKLYTPDLASCLDGITRDTVITLAKEAG 255
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 98 VKF--AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDD 136
VKF A E++ + I+AVG RP D+ A G+T D+
Sbjct: 256 VKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDE 296
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 102 GEERTVSAQNFIIAVGGRPTYPDIPGAHLG----ITSDDLFSLNKDPGKVLLVGASYIAL 157
G + + +N I+A G +P +IP A + + S PGK+ ++GA I L
Sbjct: 136 GSSQVLDTENVILASGSKPV--EIPPAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGL 193
Query: 158 EC 159
E
Sbjct: 194 EL 195
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 102 GEERTVSAQNFIIAVGGRPTYPDIPGAHLG----ITSDDLFSLNK------DPGKVLLVG 151
GE RT+ ++A+G + P + G L +T+ D + + K ++VG
Sbjct: 107 GERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVG 166
Query: 152 ASYIALECA 160
+I LE A
Sbjct: 167 GGFIGLEMA 175
>pdb|4ECD|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of
Bifidobacterium Longum Chorismate Synthase
pdb|4ECD|B Chain B, 2.5 Angstrom Resolution Crystal Structure Of
Bifidobacterium Longum Chorismate Synthase
Length = 398
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 105 RTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVL 148
RTV+ ++A+GG T PD+P T DDL +L+ P + L
Sbjct: 164 RTVA---HVVALGGVQTNPDLPLP----TPDDLEALDASPVRTL 200
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 44 FIHGKHIDNNSVVIFSKSWCPFCTKA 69
F++ K I VV+F K CPFC K
Sbjct: 4 FVNSK-IQPGKVVVFIKPTCPFCRKT 28
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 21/80 (26%)
Query: 102 GEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSL--------------------- 140
G+ + I A G +P P I GA + S + +
Sbjct: 131 GKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLE 190
Query: 141 NKDPGKVLLVGASYIALECA 160
NKD +V +VGA YI +E A
Sbjct: 191 NKDIKRVAVVGAGYIGVELA 210
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Query: 102 GEERTVSAQNFIIAVGGRPTYPDIPGAHLGITS--------------------DDLFSL- 140
G+ + I A G +P P I GA + S D + L
Sbjct: 131 GKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLE 190
Query: 141 NKDPGKVLLVGASYIALECA 160
NKD +V +VGA YI +E A
Sbjct: 191 NKDIKRVAVVGAGYIGVELA 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,642,753
Number of Sequences: 62578
Number of extensions: 166296
Number of successful extensions: 476
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 113
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)